Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
Unknown	0	broad.mit.edu	37	1	13418	13418	+	RNA	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:13418G>A	uc001aaa.3	+	3		c.661G>A			uc010nxq.1_Missense_Mutation_p.E61K|uc010nxr.1_RNA					Homo sapiens mRNA for DEAD/H box polypeptide 11 like 1 (DDX11L1 gene).																		CCACCACCCCGAGATCACATT	0.562													3	27					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3328230	3328230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:3328230C>T	uc001akf.2	+	9	1549	c.1469C>T	c.(1468-1470)CCC>CTC	p.P490L	PRDM16_uc001akc.2_Missense_Mutation_p.P490L|PRDM16_uc001akd.2_Missense_Mutation_p.P490L|PRDM16_uc001ake.2_Missense_Mutation_p.P490L|PRDM16_uc009vlh.2_Missense_Mutation_p.P191L	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	490	Pro-rich.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		GAGTACTTTCCCTCCAGGCCG	0.667			T	EVI1	MDS|AML								79	7					0	0	1	0	0
UBE4B	10277	broad.mit.edu	37	1	10211599	10211599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:10211599C>T	uc001aqs.3	+	21	3619	c.2906C>T	c.(2905-2907)TCC>TTC	p.S969F	UBE4B_uc001aqr.3_Missense_Mutation_p.S840F|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Missense_Mutation_p.S424F|UBE4B_uc001aqt.1_Missense_Mutation_p.S309F	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	969					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		TTGGTACCTTCCCTGATGAAG	0.458													40	3					0	0	1	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12835995	12835995	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:12835995G>A	uc001aui.2	+	2	624	c.597G>A	c.(595-597)ACG>ACA	p.T199T		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	199										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCCTGAACACGGTGGAGCTAG	0.527													72	17					0	0	1	0	0
MST1P9	11223	broad.mit.edu	37	1	17084510	17084510	+	Silent	SNP	G	A	A	rs61769731	by1000genomes	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:17084510G>A	uc010ock.1	-	12	1588	c.1588C>T	c.(1588-1590)CTA>TTA	p.L530L	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Silent_p.L130L	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						ACCCGCTGTAGGCCTGGCTCT	0.577													15	37					0	0	1	0	0
TMCO4	255104	broad.mit.edu	37	1	20009888	20009888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:20009888G>A	uc001bcn.2	-	16	1792	c.1550C>T	c.(1549-1551)GCC>GTC	p.A517V	TMCO4_uc001bcm.2_Missense_Mutation_p.A348V|TMCO4_uc001bco.1_Missense_Mutation_p.A517V|TMCO4_uc001bcp.1_Missense_Mutation_p.A477V	NM_181719	NP_859070	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	517						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		GATGCCCACGGCCTTCAGGAT	0.677													19	2					0	0	1	0	0
SRRM1	10250	broad.mit.edu	37	1	24996708	24996708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:24996708C>T	uc001bjm.2	+	15	2526	c.2302C>T	c.(2302-2304)CCA>TCA	p.P768S	SRRM1_uc010oel.1_Missense_Mutation_p.P780S|SRRM1_uc009vri.1_Missense_Mutation_p.P697S	NM_005839	NP_005830	Q8IYB3	SRRM1_HUMAN	serine/arginine repetitive matrix 1	768	Pro-rich.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nuclear matrix|nuclear speck	DNA binding|protein binding|RNA binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;1.01e-24)|Colorectal(126;5.95e-08)|COAD - Colon adenocarcinoma(152;3.24e-06)|GBM - Glioblastoma multiforme(114;0.000148)|BRCA - Breast invasive adenocarcinoma(304;0.00177)|KIRC - Kidney renal clear cell carcinoma(1967;0.00348)|STAD - Stomach adenocarcinoma(196;0.00483)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138)		CCCAGCACCTCCATCCCCCGT	0.582													79	9					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34100926	34100926	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:34100926G>A	uc001bxn.1	-	31	4883	c.4854C>T	c.(4852-4854)CCC>CCT	p.P1618P	CSMD2_uc001bxm.1_Silent_p.P1658P|CSMD2_uc001bxo.1_Silent_p.P531P	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1618	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GTCCCCCACAGGGGGCTGAAA	0.552											OREG0013349	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	3					0	0	1	0	0
COL9A2	1298	broad.mit.edu	37	1	40767562	40767562	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:40767562C>T	uc001cfh.1	-	31	1863	c.1793_splice	c.e31-1	p.G598_splice	COL9A2_uc001cfi.1_Splice_Site_p.G417_splice	NM_001852	NP_001843	Q14055	CO9A2_HUMAN	alpha 2 type IX collagen precursor						axon guidance|skeletal system development	collagen type IX				ovary(2)	2	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.08e-17)			CCACGTTTTCCTGTAGACAAA	0.483													14	1					0	0	1	0	0
CYP4X1	260293	broad.mit.edu	37	1	47504342	47504342	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:47504342C>T	uc001cqt.2	+	7	1036	c.786C>T	c.(784-786)ATC>ATT	p.I262I	CYP4X1_uc001cqr.2_Silent_p.I261I|CYP4X1_uc001cqs.2_Silent_p.I197I	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	262						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						ATACAATAATCCAGGAAAGAA	0.388													14	4					0	0	1	0	0
ELAVL4	1996	broad.mit.edu	37	1	50610836	50610836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:50610836G>A	uc001csb.2	+	2	485	c.217G>A	c.(217-219)GAA>AAA	p.E73K	ELAVL4_uc001cry.3_Missense_Mutation_p.E76K|ELAVL4_uc001crz.3_Missense_Mutation_p.E73K|ELAVL4_uc001csa.3_Missense_Mutation_p.E90K|ELAVL4_uc001csc.3_Missense_Mutation_p.E73K|ELAVL4_uc009vyu.2_Missense_Mutation_p.E78K|ELAVL4_uc010omz.1_Missense_Mutation_p.E78K	NM_021952	NP_068771	P26378	ELAV4_HUMAN	ELAV-like 4 isoform 1	73	RRM 1.				mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding			ovary(1)|pancreas(1)	2						TGGTGAAATAGAATCCTGCAA	0.413													55	4					0	0	1	0	0
CDCP2	200008	broad.mit.edu	37	1	54605456	54605456	+	Missense_Mutation	SNP	G	A	A	rs140548583		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:54605456G>A	uc001cwv.1	-	4	1935	c.1087C>T	c.(1087-1089)CGC>TGC	p.R363C		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	363	CUB 3.					extracellular region				ovary(1)	1						AAGCCCCTGCGGGTGGTGCTG	0.627													44	3					0	0	1	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74506974	74506974	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:74506974C>T	uc001dfy.3	-	7	1833	c.1641G>A	c.(1639-1641)GAG>GAA	p.E547E	LRRIQ3_uc001dfz.3_Intron	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	547										ovary(2)	2						TCAGGCTTTTCTCTTTTAGGA	0.308													42	8					0	0	1	0	0
BCAR3	8412	broad.mit.edu	37	1	94140254	94140254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:94140254G>A	uc001dpz.2	-	2	508	c.233C>T	c.(232-234)TCC>TTC	p.S78F	BCAR3_uc001dqa.2_Missense_Mutation_p.S78F|BCAR3_uc001dqb.2_Missense_Mutation_p.S78F	NM_003567	NP_003558	O75815	BCAR3_HUMAN	breast cancer antiestrogen resistance 3	78					response to drug|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3		all_lung(203;0.00145)|Lung NSC(277;0.00662)		all cancers(265;0.0126)|GBM - Glioblastoma multiforme(16;0.0467)|Epithelial(280;0.166)		CTGCCGTGGGGATTTGGAGTG	0.552													23	3					0	0	1	0	0
SCARNA2	677766	broad.mit.edu	37	1	109643093	109643094	+	RNA	DNP	CC	TT	TT			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:109643093_109643094CC>TT	uc001dwo.1	+	1		c.279_280CC>TT				NR_003023				Homo sapiens cDNA clone IMAGE:6602628, partial cds.												0						GCAGCGAGGCCCCTTAGGCGGC	0.673													13	0					0	0	1	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			100	13					0	0	1	0	0
HSD3B1	3283	broad.mit.edu	37	1	120056762	120056762	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:120056762C>T	uc001ehv.1	+	4	761	c.616C>T	c.(616-618)CTG>TTG	p.L206L	HSD3B1_uc001ehw.2_Silent_p.L208L	NM_000862	NP_000853	P14060	3BHS1_HUMAN	3 beta-hydroxysteroid dehydrogenase 1	206					androgen biosynthetic process|estrogen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.219)	all_lung(203;3.16e-06)|Lung NSC(69;2.19e-05)|all_epithelial(167;0.000624)		Lung(183;0.0106)|LUSC - Lung squamous cell carcinoma(189;0.0554)	NADH(DB00157)|Trilostane(DB01108)	AAACGAGGCCCTGAACAACAA	0.502													51	7					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145359169	145359169	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:145359169T>A	uc001end.3	+	74	9369	c.9334T>A	c.(9334-9336)TTG>ATG	p.L3112M	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oyq.1_Intron|NBPF10_uc010oyr.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3037											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GCGTGTTGGCTTGGCTGTTGA	0.458													6	386					0	0	1	0	0
FMO5	2330	broad.mit.edu	37	1	146658739	146658739	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:146658739T>A	uc001epi.2	-	9	1731	c.1342A>T	c.(1342-1344)AAT>TAT	p.N448Y	FMO5_uc001eph.3_Intron|FMO5_uc001epj.2_3'UTR	NM_001461	NP_001452	P49326	FMO5_HUMAN	flavin containing monooxygenase 5 isoform 1	448						integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			ovary(3)	3	all_hematologic(923;0.0487)					GACAGCAGATTGGGCCTGACC	0.507													25	62					0	0	1	0	0
LOC200030	200030	broad.mit.edu	37	1	148341974	148341974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:148341974G>A	uc001eqf.2	-	5	634	c.599C>T	c.(598-600)CCT>CTT	p.P200L	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|NBPF14_uc009wkf.1_RNA|uc001erd.3_Missense_Mutation_p.P200L|uc001erc.3_RNA|uc010paj.1_Intron|uc010pau.1_5'UTR|uc010pav.1_Missense_Mutation_p.P200L|uc010paw.1_Missense_Mutation_p.P125L	NM_017940	NP_060410	Q86T75	NBPFB_HUMAN	hypothetical protein LOC55672	200	NBPF 1.					cytoplasm					0						TGAGTCCTCAGGGACTTTGCT	0.502													159	434					0	0	1	0	0
FCGR1A	2209	broad.mit.edu	37	1	149759964	149759964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:149759964G>A	uc001esp.3	+	4	400	c.350G>A	c.(349-351)GGA>GAA	p.G117E	HIST2H2BF_uc010pbj.1_Intron|FCGR1A_uc009wlg.2_RNA|FCGR1A_uc009wlh.1_RNA	NM_000566	NP_000557	P12314	FCGR1_HUMAN	Fc fragment of IgG, high affinity Ia, receptor	117	Ig-like C2-type 2.|Extracellular (Potential).				interferon-gamma-mediated signaling pathway|phagocytosis, engulfment	integral to membrane|plasma membrane	IgG binding|receptor activity|receptor signaling protein activity			ovary(1)	1	Breast(34;0.0124)|all_hematologic(923;0.127)				Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Methyl aminolevulinate(DB00992)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Porfimer(DB00707)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TTCACGGAAGGAGAACCTCTG	0.463													68	82					0	0	1	0	0
PRUNE	58497	broad.mit.edu	37	1	150998085	150998085	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:150998085C>T	uc001ewh.1	+	5	751	c.615C>T	c.(613-615)TTC>TTT	p.F205F	PRUNE_uc001ewi.1_Silent_p.F23F|PRUNE_uc010pco.1_Intron|PRUNE_uc001ewj.1_Intron|PRUNE_uc001ewk.1_Silent_p.F23F	NM_021222	NP_067045	Q86TP1	PRUNE_HUMAN	prune	205						cytoplasm|focal adhesion|nucleus	inorganic diphosphatase activity|manganese ion binding|protein binding			ovary(1)	1	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			AGGCCCTTTTCCCAGACCTAC	0.428													37	104					0	0	1	0	0
BNIPL	149428	broad.mit.edu	37	1	151018346	151018346	+	Missense_Mutation	SNP	C	T	T	rs150851524		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:151018346C>T	uc001ewl.2	+	8	1098	c.925C>T	c.(925-927)CGG>TGG	p.R309W	BNIPL_uc009wmi.2_Missense_Mutation_p.R227W|BNIPL_uc009wmj.2_RNA|C1orf56_uc001ewn.2_5'Flank	NM_138278	NP_612122	Q7Z465	BNIPL_HUMAN	BCL2/adenovirus E1B 19kD interacting protein	309	CRAL-TRIO.				apoptosis|induction of apoptosis|negative regulation of cell proliferation|regulation of growth rate	cytosol|nucleus	identical protein binding				0	Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GGCACTGCTTCGGCCCTTCAT	0.443													62	114					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152191500	152191500	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:152191500G>A	uc001ezt.1	-	3	2681	c.2605C>T	c.(2605-2607)CAG>TAG	p.Q869*		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	869	9.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GACTCATGCTGACCATAGCTG	0.607													69	59					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152323387	152323387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:152323387C>T	uc001ezw.3	-	3	6948	c.6875G>A	c.(6874-6876)GGG>GAG	p.G2292E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2292							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCCAGTCTCCCATGAACTGT	0.493													132	158					0	0	1	0	0
LCE1A	353131	broad.mit.edu	37	1	152800131	152800131	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:152800131C>T	uc010pdw.1	+	1	183	c.183C>T	c.(181-183)AGC>AGT	p.S61S		NM_178348	NP_848125	Q5T7P2	LCE1A_HUMAN	late cornified envelope 1A	61	Cys-rich.				keratinization					ovary(1)|skin(1)	2	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCGGCTGCAGCTCTGGGGGAG	0.577													47	56					0	0	1	0	0
NPR1	4881	broad.mit.edu	37	1	153665653	153665653	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:153665653C>T	uc001fcs.3	+	21	3524	c.3103C>T	c.(3103-3105)CGA>TGA	p.R1035*	NPR1_uc010pdz.1_Nonsense_Mutation_p.R781*|NPR1_uc010pea.1_Nonsense_Mutation_p.R513*	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	1035	Cytoplasmic (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	GCTGGAGCTTCGAGGGGATGT	0.562													38	68					0	0	1	0	0
FAM189B	10712	broad.mit.edu	37	1	155217666	155217666	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:155217666G>A	uc001fjm.2	-	12	2520	c.1914C>T	c.(1912-1914)TCC>TCT	p.S638S	RAG1AP1_uc010pey.1_Intron|FAM189B_uc009wql.2_Silent_p.S440S|FAM189B_uc001fjn.2_Silent_p.S542S|FAM189B_uc001fjo.2_Silent_p.S620S|FAM189B_uc001fjp.2_RNA	NM_006589	NP_006580	P81408	F189B_HUMAN	hypothetical protein LOC10712 isoform a	638	Poly-Ser.					integral to membrane	WW domain binding			ovary(1)|breast(1)	2						GACGCCGCAGGGAAGAGCTAG	0.687													9	7					0	0	1	0	0
SEMA4A	64218	broad.mit.edu	37	1	156144622	156144622	+	Missense_Mutation	SNP	C	T	T	rs111977724		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:156144622C>T	uc001fnl.2	+	12	1429	c.1325C>T	c.(1324-1326)TCG>TTG	p.S442L	SEMA4A_uc009wrq.2_Missense_Mutation_p.S442L|SEMA4A_uc001fnm.2_Missense_Mutation_p.S442L|SEMA4A_uc001fnn.2_Missense_Mutation_p.S310L|SEMA4A_uc001fno.2_Missense_Mutation_p.S442L	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	442	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					GCCACAGGGTCGCTCCACAAG	0.572													18	36					0	0	1	0	0
C1orf61	10485	broad.mit.edu	37	1	156376944	156376944	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:156376944G>A	uc001fou.1	-	6	468	c.351C>T	c.(349-351)TCC>TCT	p.S117S	C1orf61_uc001fot.1_3'UTR|C1orf61_uc001fov.1_Intron|C1orf61_uc001fow.1_Intron|C1orf61_uc001fox.1_Intron	NM_006365	NP_006356	Q13536	CROC4_HUMAN	transcriptional activator of the c-fos promoter	117						nucleus				skin(1)	1	Hepatocellular(266;0.158)					ggttagacatggagaaggact	0.154													10	27					0	0	1	0	0
IQGAP3	128239	broad.mit.edu	37	1	156509647	156509647	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:156509647G>A	uc001fpf.2	-	24	2950	c.2875C>T	c.(2875-2877)CTC>TTC	p.L959F		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	959					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGGTAGAAGAGGTGTTGGTAT	0.488													38	69					0	0	1	0	0
IQGAP3	128239	broad.mit.edu	37	1	156526411	156526411	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:156526411A>G	uc001fpf.2	-	12	1279	c.1204T>C	c.(1204-1206)TGC>CGC	p.C402R	IQGAP3_uc009wsb.1_Missense_Mutation_p.C359R	NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	402					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GCCTCAGGGCACATCAGCTCC	0.602													17	41					0	0	1	0	0
OR10K2	391107	broad.mit.edu	37	1	158390018	158390018	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:158390018C>T	uc010pii.1	-	1	639	c.639G>A	c.(637-639)TTG>TTA	p.L213L		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	213	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					ACACCAAGATCAACAATAAGG	0.448													27	46					0	0	1	0	0
OR6K3	391114	broad.mit.edu	37	1	158686990	158686990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:158686990G>A	uc010pip.1	-	1	964	c.964C>T	c.(964-966)CTT>TTT	p.L322F		NM_001005327	NP_001005327	Q8NGY3	OR6K3_HUMAN	olfactory receptor, family 6, subfamily K,	322	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					ACTTTTTGAAGACAGAACAGT	0.328													69	91					0	0	1	0	0
OR10J1	26476	broad.mit.edu	37	1	159409674	159409674	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:159409674C>T	uc010piv.1	+	1	126	c.126C>T	c.(124-126)TTC>TTT	p.F42F	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	42	Helical; Name=1; (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					TTGGCGTGTTCCTTGCACTAT	0.423													93	103					0	0	1	0	0
SLAMF7	57823	broad.mit.edu	37	1	160718131	160718131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:160718131G>A	uc001fwq.2	+	2	218	c.203G>A	c.(202-204)GGC>GAC	p.G68D	SLAMF7_uc010pjn.1_Intron|SLAMF7_uc001fws.2_Intron|SLAMF7_uc001fwr.2_Missense_Mutation_p.G68D|SLAMF7_uc010pjo.1_Missense_Mutation_p.G68D|SLAMF7_uc010pjp.1_Intron|SLAMF7_uc010pjq.1_Missense_Mutation_p.G68D|SLAMF7_uc010pjr.1_Intron	NM_021181	NP_067004	Q9NQ25	SLAF7_HUMAN	SLAM family member 7	68	Extracellular (Potential).				cell adhesion|natural killer cell activation|natural killer cell mediated cytotoxicity	integral to membrane	receptor activity			skin(2)|ovary(1)	3	all_cancers(52;2.63e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			CCAGAAGGGGGCACTATCATA	0.498													24	41					0	0	1	0	0
F11R	50848	broad.mit.edu	37	1	160970542	160970542	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:160970542G>A	uc009wtt.2	-	4	537	c.267C>T	c.(265-267)TTC>TTT	p.F89F	F11R_uc010pjv.1_Intron|F11R_uc001fxe.3_Silent_p.F89F|F11R_uc009wtu.2_Silent_p.F89F|F11R_uc010pjw.1_Silent_p.F93F|F11R_uc001fxf.3_Silent_p.F89F	NM_016946	NP_058642	Q9Y624	JAM1_HUMAN	F11 receptor precursor	89	Extracellular (Potential).|Ig-like V-type 1.				blood coagulation|inflammatory response|interspecies interaction between organisms|leukocyte migration|tight junction assembly	integral to membrane|tight junction				ovary(2)	2	all_cancers(52;6.73e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00207)			CAGTTGGCAAGAAGGTCACCC	0.542													54	44					0	0	1	0	0
DPT	1805	broad.mit.edu	37	1	168683549	168683549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:168683549C>T	uc001gfp.2	-	2	357	c.341G>A	c.(340-342)GGA>GAA	p.G114E		NM_001937	NP_001928	Q07507	DERM_HUMAN	dermatopontin precursor	114	2 X 53-55 AA tandem repeats.|1-2.|3 X 6 AA repeats of D-R-[EQ]-W-[NQK]- [FY].				cell adhesion	extracellular space|proteinaceous extracellular matrix				ovary(1)	1	all_hematologic(923;0.208)					GCTCTGGAATCCTGCCACCAG	0.542													15	79					0	0	1	0	0
C1orf114	57821	broad.mit.edu	37	1	169390657	169390657	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:169390657G>A	uc001gga.1	-	3	1180	c.1012C>T	c.(1012-1014)CGA>TGA	p.R338*	C1orf114_uc001gfz.1_Nonsense_Mutation_p.R338*|C1orf114_uc009wvq.1_Nonsense_Mutation_p.R338*|C1orf114_uc001ggb.2_Nonsense_Mutation_p.R338*|C1orf114_uc001ggc.1_Nonsense_Mutation_p.R338*	NM_021179	NP_067002	Q5TID7	CA114_HUMAN	hypothetical protein LOC57821	338	Potential.										0	all_hematologic(923;0.208)					TCTTTCTGTCGAGGGGAAAGA	0.383													40	69					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169511204	169511204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:169511204G>A	uc001ggg.1	-	13	3269	c.3124C>T	c.(3124-3126)CCT>TCT	p.P1042S		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1042	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	GGAGATAAAGGAGCATGGTGT	0.398													58	192					0	0	1	0	0
SELP	6403	broad.mit.edu	37	1	169566244	169566244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:169566244G>A	uc001ggi.3	-	11	1941	c.1876C>T	c.(1876-1878)CCA>TCA	p.P626S	SELP_uc001ggh.2_Missense_Mutation_p.P461S|SELP_uc009wvr.2_Missense_Mutation_p.P626S	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	626	Extracellular (Potential).|Sushi 7.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CAGGTTGGTGGAGTAGCTGAC	0.398													27	69					0	0	1	0	0
C1orf9	51430	broad.mit.edu	37	1	172579019	172579020	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:172579019_172579020CC>TT	uc001giq.3	+	24	3701_3702	c.3385_3386CC>TT	c.(3385-3387)CCC>TTC	p.P1129F	C1orf9_uc009wwd.2_Missense_Mutation_p.P1085F|C1orf9_uc010pmn.1_Missense_Mutation_p.P758F|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	1129					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		ACCATTGCACCCCATAGCCAAT	0.371													22	67					0	0	1	0	0
RABGAP1L	9910	broad.mit.edu	37	1	174606552	174606552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:174606552C>T	uc001gjx.2	+	14	1945	c.1750C>T	c.(1750-1752)CGT>TGT	p.R584C		NM_014857	NP_055672	Q5R372	RBG1L_HUMAN	RAB GTPase activating protein 1-like isoform A	584	Rab-GAP TBC.				regulation of protein localization	early endosome|Golgi apparatus|nucleus	Rab GTPase activator activity			ovary(2)|lung(1)|kidney(1)	4						AGATATTCATCGTACATTTCC	0.358													14	46					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175116109	175116109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:175116109C>T	uc001gkl.1	+	19	3915	c.3802C>T	c.(3802-3804)CCT>TCT	p.P1268S		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1268	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		ATTCTCCATTCCTTACGTGGA	0.517											OREG0013992	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	46					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525795	176525795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:176525795G>A	uc001gkz.2	+	2	1501	c.337G>A	c.(337-339)GAA>AAA	p.E113K	PAPPA2_uc001gky.1_Missense_Mutation_p.E113K|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	113					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						AGACCTGACTGAAAATCCAGC	0.562													114	179					0	0	1	0	0
SEC16B	89866	broad.mit.edu	37	1	177901873	177901873	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:177901873G>A	uc001gli.1	-	23	2982	c.2892C>T	c.(2890-2892)TCC>TCT	p.S964S	SEC16B_uc001glk.1_Silent_p.S641S|SEC16B_uc009wwy.1_Intron|SEC16B_uc001glh.1_Silent_p.S624S|SEC16B_uc009wwz.1_Silent_p.S623S|SEC16B_uc001glj.1_Silent_p.S965S	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	964					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						GCAGAGGTGGGGACTCAGGGG	0.622													9	18					0	0	1	0	0
SEC16B	89866	broad.mit.edu	37	1	177930760	177930760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:177930760G>A	uc001gli.1	-	6	842	c.752C>T	c.(751-753)CCC>CTC	p.P251L	SEC16B_uc001glk.1_5'UTR|SEC16B_uc001glh.1_5'Flank|SEC16B_uc009wwz.1_5'UTR|SEC16B_uc001glj.1_Missense_Mutation_p.P251L|SEC16B_uc001gll.3_Missense_Mutation_p.P251L	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	251					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						TGAAGCTGGGGGATCATCCCG	0.542													30	36					0	0	1	0	0
QSOX1	5768	broad.mit.edu	37	1	180151404	180151404	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:180151404C>T	uc001gnz.2	+	6	777	c.702C>T	c.(700-702)TTC>TTT	p.F234F	QSOX1_uc001gny.2_Silent_p.F234F|QSOX1_uc001goa.2_Silent_p.F234F|QSOX1_uc001gob.1_RNA	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	234					cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						TCACCGACTTCCCCTCTTGCT	0.607													64	131					0	0	1	0	0
ZNF648	127665	broad.mit.edu	37	1	182026812	182026812	+	Missense_Mutation	SNP	C	T	T	rs141227760	byFrequency	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:182026812C>T	uc001goz.2	-	2	542	c.334G>A	c.(334-336)GAG>AAG	p.E112K		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	112					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CCCTGGGTCTCGTTGATCTTT	0.547													28	100					0	0	1	0	0
SMG7	9887	broad.mit.edu	37	1	183510133	183510133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:183510133C>T	uc001gqg.2	+	13	1432	c.1310C>T	c.(1309-1311)TCC>TTC	p.S437F	SMG7_uc010pob.1_Missense_Mutation_p.S466F|SMG7_uc001gqf.2_Missense_Mutation_p.S437F|SMG7_uc001gqh.2_Missense_Mutation_p.S437F|SMG7_uc001gqi.2_Missense_Mutation_p.S395F|SMG7_uc010poc.1_Missense_Mutation_p.S395F	NM_173156	NP_775179	Q92540	SMG7_HUMAN	SMG-7 homolog isoform 1	437					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|intermediate filament cytoskeleton|nucleus	protein phosphatase 2A binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TTGGATTTTTCCAAAGGTCAC	0.393													44	41					0	0	1	0	0
NCF2	4688	broad.mit.edu	37	1	183532329	183532329	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:183532329C>T	uc001gqj.3	-	13	1565	c.1290_splice	c.e13+1	p.V430_splice	NCF2_uc010pod.1_Splice_Site_p.V385_splice|NCF2_uc010poe.1_Splice_Site_p.V349_splice|NCF2_uc001gqk.3_Splice_Site_p.V430_splice	NM_000433	NP_000424	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2						cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			ovary(3)	3						ATTGCACTCACCACTGTGTTC	0.388													46	48					0	0	1	0	0
PRG4	10216	broad.mit.edu	37	1	186277348	186277348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:186277348G>A	uc001gru.3	+	7	2548	c.2497G>A	c.(2497-2499)GAG>AAG	p.E833K	PRG4_uc001grt.3_Missense_Mutation_p.E792K|PRG4_uc009wyl.2_Missense_Mutation_p.E740K|PRG4_uc009wym.2_Missense_Mutation_p.E699K|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	833	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|57.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						TACCCCCAAGGAGCCTGCACC	0.582													161	166					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190067595	190067595	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:190067595C>T	uc001gse.1	-	8	2086	c.1854G>A	c.(1852-1854)TGG>TGA	p.W618*	FAM5C_uc010pot.1_Nonsense_Mutation_p.W516*	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	618						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AAAATGTCTTCCATTTGTTCC	0.433													149	251					0	0	1	0	0
KCNT2	343450	broad.mit.edu	37	1	196438156	196438156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:196438156C>T	uc001gtd.1	-	6	487	c.427G>A	c.(427-429)GAA>AAA	p.E143K	KCNT2_uc009wyt.1_5'Flank|KCNT2_uc001gte.1_Missense_Mutation_p.E143K|KCNT2_uc001gtf.1_Missense_Mutation_p.E143K|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.E143K|KCNT2_uc009wyv.1_Intron	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	143	Helical; Name=Segment S3; (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TTAATTATTTCCAAGATGAAG	0.313													9	14					0	0	1	0	0
CFHR5	81494	broad.mit.edu	37	1	196953100	196953100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:196953100C>T	uc001gts.3	+	3	391	c.263C>T	c.(262-264)TCC>TTC	p.S88F		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	88	Sushi 2.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						GGAATGTGTTCCTTTCCTTTT	0.308													25	22					0	0	1	0	0
F13B	2165	broad.mit.edu	37	1	197021831	197021831	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:197021831G>A	uc001gtt.1	-	9	1532	c.1488C>T	c.(1486-1488)ACC>ACT	p.T496T		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	496	Sushi 8.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CAGACAATGGGGTTAATGGAG	0.318													40	52					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201013573	201013573	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:201013573C>T	uc001gvv.2	-	39	4907	c.4680G>A	c.(4678-4680)CGG>CGA	p.R1560R		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1560	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CCTCAATGGTCCGCAGCCCTG	0.532													36	71					0	0	1	0	0
KDM5B	10765	broad.mit.edu	37	1	202715368	202715368	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:202715368G>A	uc001gyf.2	-	15	2216	c.2100C>T	c.(2098-2100)TTC>TTT	p.F700F	KDM5B_uc009xag.2_Silent_p.F736F|KDM5B_uc001gyg.1_Silent_p.F542F	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	700					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						TGGCAGACATGAAGCATGTAG	0.393													43	55					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207640050	207640050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:207640050C>T	uc001hfw.2	+	2	332	c.238C>T	c.(238-240)CCT>TCT	p.P80S	CR2_uc001hfv.2_Missense_Mutation_p.P80S|CR2_uc009xch.2_Missense_Mutation_p.P80S	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	80	Sushi 1.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						TAAACCTGCTCCTAAATGTGA	0.403													35	50					0	0	1	0	0
HSD11B1	3290	broad.mit.edu	37	1	209880108	209880108	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:209880108A>C	uc001hhj.2	+	4	381	c.274A>C	c.(274-276)ACC>CCC	p.T92P	HSD11B1_uc001hhk.2_Missense_Mutation_p.T92P	NM_181755	NP_861420	P28845	DHI1_HUMAN	11-beta-hydroxysteroid dehydrogenase 1	92	Lumenal (Potential).|NADP.				glucocorticoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	11-beta-hydroxysteroid dehydrogenase (NADP+) activity|11-beta-hydroxysteroid dehydrogenase|binding			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;1.04e-55)|Epithelial(68;1.57e-52)|all cancers(67;1.83e-46)|Colorectal(1306;0.115)	NADH(DB00157)	CATTGCTGGCACCATGGAAGA	0.512													108	158					0	0	1	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209950783	209950783	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:209950783C>T	uc001hho.2	+	12	1430	c.1140C>T	c.(1138-1140)TGC>TGT	p.C380C	TRAF3IP3_uc001hhl.2_Silent_p.C360C|TRAF3IP3_uc001hhm.1_Intron|TRAF3IP3_uc001hhn.2_Silent_p.C360C|TRAF3IP3_uc009xcr.2_Silent_p.C380C	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	380	Cytoplasmic (Potential).|Potential.					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		AGATTGAATGCCTGCAAGGGG	0.542													30	39					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	210857019	210857019	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:210857019C>T	uc001hib.2	-	11	2744	c.2574G>A	c.(2572-2574)TCG>TCA	p.S858S	KCNH1_uc001hic.2_Silent_p.S831S	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	858	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		GTGTCTCCATCGACTCAGCCT	0.592													84	84					0	0	1	0	0
IARS2	55699	broad.mit.edu	37	1	220315224	220315224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:220315224C>T	uc001hmc.2	+	20	2598	c.2494C>T	c.(2494-2496)CGT>TGT	p.R832C	IARS2_uc001hmd.2_Missense_Mutation_p.R168C	NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	832					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	TGTAATAGTTCGTTCTTTTGC	0.378													37	105					0	0	1	0	0
ENAH	55740	broad.mit.edu	37	1	225718286	225718286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:225718286G>A	uc001hpc.1	-	4	857	c.404C>T	c.(403-405)CCA>CTA	p.P135L	ENAH_uc001hpd.1_Missense_Mutation_p.P135L	NM_001008493	NP_001008493	Q8N8S7	ENAH_HUMAN	enabled homolog isoform a	135	Potential.				axon guidance|intracellular transport|T cell receptor signaling pathway	cytosol|filopodium|focal adhesion|lamellipodium|synapse	actin binding|SH3 domain binding|WW domain binding			ovary(1)|skin(1)	2	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.19)		TTCTTGGGATGGGCCATTTTG	0.348													96	92					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228554256	228554256	+	Silent	SNP	G	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:228554256G>T	uc009xez.1	+	84	19376	c.19332G>T	c.(19330-19332)CTG>CTT	p.L6444L	OBSCN_uc001hsr.1_Silent_p.L1073L	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	6444	Ig-like 54.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGGCAGAGCTGCTGGTGCTTG	0.637													32	44					4.65686e-17	4.75348e-17	1	1	0
TAF5L	27097	broad.mit.edu	37	1	229738377	229738377	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:229738377G>A	uc001htq.2	-	4	703	c.537C>T	c.(535-537)CTC>CTT	p.L179L	TAF5L_uc001htr.2_Silent_p.L179L	NM_014409	NP_055224	O75529	TAF5L_HUMAN	PCAF associated factor 65 beta isoform a	179					histone H3 acetylation|transcription from RNA polymerase II promoter	STAGA complex|transcription factor TFTC complex	sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)	1	Breast(184;0.193)|Ovarian(103;0.249)	Prostate(94;0.167)				TGTCACTTTGGAGGTAGCGGA	0.468													107	90					0	0	1	0	0
URB2	9816	broad.mit.edu	37	1	229772119	229772119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:229772119C>T	uc001hts.1	+	4	1895	c.1759C>T	c.(1759-1761)CTC>TTC	p.L587F	URB2_uc009xfd.1_Missense_Mutation_p.L587F	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	587						nucleolus				central_nervous_system(2)|ovary(1)	3						GCTGGCCCTTCTCCCGGACAC	0.617													139	125					0	0	1	0	0
DISC1	27185	broad.mit.edu	37	1	231830229	231830229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:231830229C>T	uc001huz.2	+	2	778	c.725C>T	c.(724-726)CCC>CTC	p.P242L	TSNAX-DISC1_uc010pwe.1_Missense_Mutation_p.P197L|TSNAX-DISC1_uc010pwf.1_Missense_Mutation_p.P197L|TSNAX-DISC1_uc010pwg.1_Missense_Mutation_p.P231L|TSNAX-DISC1_uc010pwh.1_Missense_Mutation_p.P197L|TSNAX-DISC1_uc010pwi.1_Missense_Mutation_p.P197L|TSNAX-DISC1_uc010pwj.1_Missense_Mutation_p.P231L|TSNAX-DISC1_uc010pwk.1_Missense_Mutation_p.P231L|TSNAX-DISC1_uc010pwl.1_RNA|DISC1_uc010pwo.1_Missense_Mutation_p.P242L|DISC1_uc010pwp.1_Missense_Mutation_p.P242L|DISC1_uc010pwq.1_Missense_Mutation_p.P242L|DISC1_uc010pwr.1_Missense_Mutation_p.P242L|DISC1_uc010pws.1_Missense_Mutation_p.P242L|DISC1_uc010pwt.1_Missense_Mutation_p.P242L|DISC1_uc010pwu.1_Intron|DISC1_uc010pwv.1_RNA|DISC1_uc010pww.1_Missense_Mutation_p.P242L|DISC1_uc010pwx.1_RNA|DISC1_uc010pwy.1_RNA|DISC1_uc010pwz.1_RNA|DISC1_uc010pxa.1_RNA|DISC1_uc001huy.2_Missense_Mutation_p.P242L|DISC1_uc010pxb.1_Missense_Mutation_p.P242L|DISC1_uc010pxc.1_Missense_Mutation_p.P242L|DISC1_uc010pxd.1_5'UTR|DISC1_uc010pxe.1_Missense_Mutation_p.P242L|DISC1_uc009xfr.2_Missense_Mutation_p.P197L|DISC1_uc010pxf.1_Missense_Mutation_p.P242L|DISC1_uc010pxg.1_Missense_Mutation_p.P242L|DISC1_uc010pxh.1_Missense_Mutation_p.P242L|DISC1_uc010pxi.1_RNA|DISC1_uc010pxj.1_5'UTR|DISC1_uc010pxk.1_RNA|DISC1_uc010pxl.1_RNA|DISC1_uc010pxm.1_Missense_Mutation_p.P242L|DISC1_uc010pxn.1_5'UTR|DISC1_uc001hva.2_Missense_Mutation_p.P242L|DISC1_uc010pwm.1_Missense_Mutation_p.P242L|DISC1_uc001hux.1_Missense_Mutation_p.P242L|DISC1_uc001hvc.3_Missense_Mutation_p.P242L|DISC1_uc010pwn.1_Missense_Mutation_p.P242L	NM_018662	NP_061132	Q9NRI5	DISC1_HUMAN	disrupted in schizophrenia 1 isoform L	242	Interaction with MAP1A.				microtubule cytoskeleton organization|neuron migration|positive regulation of neuroblast proliferation|positive regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	centrosome|microtubule	protein binding			skin(1)	1		all_cancers(173;0.0208)|Prostate(94;0.0975)				TGCCAGAGCCCCCAGGAGATG	0.612													14	46					0	0	1	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232600814	232600814	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:232600814G>A	uc001hvg.2	-	7	2750	c.2592C>T	c.(2590-2592)TTC>TTT	p.F864F	SIPA1L2_uc001hvf.2_5'Flank	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	864					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				CAGACTGGCCGAAGTCCCGGG	0.473													49	108					0	0	1	0	0
KCNK1	3775	broad.mit.edu	37	1	233750217	233750217	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:233750217G>A	uc010pxo.1	+	1	468	c.300G>A	c.(298-300)TGG>TGA	p.W100*		NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	100						voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	CGGGCAACTGGAACTGGGACT	0.682													14	19					0	0	1	0	0
NID1	4811	broad.mit.edu	37	1	236212240	236212240	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:236212240G>A	uc001hxo.2	-	2	377	c.275C>T	c.(274-276)TCC>TTC	p.S92F	NID1_uc009xgd.2_Missense_Mutation_p.S92F	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	92					cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	CCCGGGATGGGATTCTTTGGC	0.532													38	124					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237755070	237755070	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:237755070A>C	uc001hyl.1	+	32	4312	c.4192A>C	c.(4192-4194)AGC>CGC	p.S1398R		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1398	Cytoplasmic (By similarity).|B30.2/SPRY 3.|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GCCAGATTACAGCACAAGCCA	0.388													9	12					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237794791	237794791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:237794791G>A	uc001hyl.1	+	42	6625	c.6505G>A	c.(6505-6507)GAG>AAG	p.E2169K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2169	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GGGGATGCACGAGACTGTGAT	0.458													8	37					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237801729	237801729	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:237801729G>T	uc001hyl.1	+	45	6985	c.6865G>T	c.(6865-6867)GGG>TGG	p.G2289W		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2289	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCCAGACATTGGGTGGAACCC	0.413													74	216					3.19467e-53	3.28137e-53	1	1	0
FMN2	56776	broad.mit.edu	37	1	240493991	240493991	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:240493991G>A	uc010pyd.1	+	11	4751	c.4526G>A	c.(4525-4527)GGA>GAA	p.G1509E	FMN2_uc010pye.1_Missense_Mutation_p.G1513E|FMN2_uc010pyf.1_Missense_Mutation_p.G155E|FMN2_uc010pyg.1_Missense_Mutation_p.G105E	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1509	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AAGACTCGAGGACAGGCAGAT	0.423													32	30					0	0	1	0	0
SCCPDH	51097	broad.mit.edu	37	1	246921631	246921631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:246921631C>T	uc001ibr.2	+	6	1015	c.668C>T	c.(667-669)CCG>CTG	p.P223L		NM_016002	NP_057086	Q8NBX0	SCPDH_HUMAN	saccharopine dehydrogenase (putative)	223						midbody	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity			ovary(1)	1	all_cancers(71;6.8e-05)|all_epithelial(71;7.93e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0545)|Lung NSC(105;0.0618)	all_cancers(173;0.0343)	OV - Ovarian serous cystadenocarcinoma(106;0.00323)	GBM - Glioblastoma multiforme(49;0.0896)		AAACCTGTCCCGCTCATTGGT	0.323													21	30					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247599273	247599273	+	Silent	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:247599273T>C	uc001icr.2	+	8	2638	c.2500T>C	c.(2500-2502)TTG>CTG	p.L834L	NLRP3_uc001ics.2_Intron|NLRP3_uc001icu.2_Silent_p.L834L|NLRP3_uc001icw.2_Silent_p.L777L|NLRP3_uc001icv.2_Intron|NLRP3_uc010pyw.1_Silent_p.L812L	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	834	LRR 4.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CTATGGAAGGTTGGTCAGCTG	0.527													36	62					0	0	1	0	0
C1orf150	148823	broad.mit.edu	37	1	247737516	247737516	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:247737516C>T	uc001idf.2	+	5	285	c.240C>T	c.(238-240)TCC>TCT	p.S80S	C1orf150_uc009xgw.2_RNA|C1orf150_uc001ida.3_RNA|C1orf150_uc001idb.3_RNA|C1orf150_uc009xgx.2_RNA	NM_145278	NP_660321	Q5JQS6	CA150_HUMAN	hypothetical protein LOC148823	80											0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0241)			ATCAGAGATCCTCCCTGAGCT	0.438													46	42					0	0	1	0	0
OR11L1	391189	broad.mit.edu	37	1	248004731	248004731	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:248004731G>A	uc001idn.1	-	1	468	c.468C>T	c.(466-468)GGC>GGT	p.G156G		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AAGGCAGAAAGCCTGTGCTGA	0.577													65	79					0	0	1	0	0
OR2M2	391194	broad.mit.edu	37	1	248343804	248343804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:248343804G>A	uc010pzf.1	+	1	517	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TGGGTCTCGGGAAATAGCCCA	0.418													81	258					0	0	1	0	0
TUBAL3	79861	broad.mit.edu	37	10	5435781	5435781	+	Missense_Mutation	SNP	G	A	A	rs148029829		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:5435781G>A	uc001ihy.2	-	4	1080	c.1040C>T	c.(1039-1041)TCT>TTT	p.S347F	TUBAL3_uc001ihz.2_Missense_Mutation_p.S307F	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	347					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						AAACTGAACAGAGTGCCTCGA	0.577													17	23					0	0	1	0	0
UPF2	26019	broad.mit.edu	37	10	12001227	12001227	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:12001227G>A	uc001ila.2	-	11	2787	c.2313C>T	c.(2311-2313)CTC>CTT	p.L771L	UPF2_uc001ilb.2_Silent_p.L771L|UPF2_uc001ilc.2_Silent_p.L771L|UPF2_uc009xiz.1_Silent_p.L771L	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	771	Sufficient for interaction with UPF3A and UPF3B.|Sufficient for interaction with EIF4A1 and EIF1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				CATATTCCTGGAGAGGAGGAC	0.408													251	342					0	0	1	0	0
OLAH	55301	broad.mit.edu	37	10	15106407	15106407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:15106407G>A	uc001inu.2	+	5	562	c.308G>A	c.(307-309)GGA>GAA	p.G103E	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Missense_Mutation_p.G156E	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	103					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						TTTAGTATGGGATCCTACATT	0.358													13	30					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15559193	15559193	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:15559193C>T	uc001ioc.1	-	30	3156	c.3156G>A	c.(3154-3156)AGG>AGA	p.R1052R	ITGA8_uc010qcb.1_Silent_p.R1037R	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	1052	Cytoplasmic (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TCAGCTGTTCCCTGTCGGTCA	0.443													26	28					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15600105	15600105	+	Missense_Mutation	SNP	C	T	T	rs138187704		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:15600105C>T	uc001ioc.1	-	26	2734	c.2734G>A	c.(2734-2736)GAA>AAA	p.E912K	ITGA8_uc010qcb.1_Missense_Mutation_p.E897K	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	912	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CTGTGGAATTCGACCACATGT	0.498													36	31					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15639211	15639211	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:15639211T>A	uc001ioc.1	-	21	2206	c.2206A>T	c.(2206-2208)ACA>TCA	p.T736S	ITGA8_uc010qcb.1_Missense_Mutation_p.T721S	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	736	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CTTACATTTGTTCCAGACACC	0.448													35	32					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15648358	15648358	+	Missense_Mutation	SNP	C	T	T	rs144983869	byFrequency	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:15648358C>T	uc001ioc.1	-	18	1828	c.1828G>A	c.(1828-1830)GAA>AAA	p.E610K	ITGA8_uc010qcb.1_Missense_Mutation_p.E595K	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	610	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						AAGGTGGATTCGTCCAAACTG	0.373													11	27					0	0	1	0	0
PLXDC2	84898	broad.mit.edu	37	10	20568699	20568699	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:20568699T>C	uc001iqg.1	+	14	2178	c.1541T>C	c.(1540-1542)GTT>GCT	p.V514A	PLXDC2_uc001iqh.1_Missense_Mutation_p.V465A|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	514	Cytoplasmic (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						TATGCTGAAGTTGAACCAGTT	0.418													19	29					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24669854	24669854	+	Silent	SNP	C	T	T	rs41277414	byFrequency	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:24669854C>T	uc001iru.3	+	3	814	c.411C>T	c.(409-411)GTC>GTT	p.V137V	KIAA1217_uc001irs.2_Silent_p.V57V|KIAA1217_uc001irt.3_Silent_p.V137V|KIAA1217_uc010qcy.1_Silent_p.V137V|KIAA1217_uc010qcz.1_Silent_p.V137V|KIAA1217_uc001irv.1_5'UTR|KIAA1217_uc010qda.1_RNA	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	137					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GTGACCCGGTCGAGCATTTAT	0.512													29	35					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24813565	24813565	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:24813565A>G	uc001iru.3	+	13	3173	c.2770A>G	c.(2770-2772)ACC>GCC	p.T924A	KIAA1217_uc001irs.2_Missense_Mutation_p.T844A|KIAA1217_uc001irt.3_Missense_Mutation_p.T889A|KIAA1217_uc010qcy.1_Missense_Mutation_p.T889A|KIAA1217_uc010qcz.1_Missense_Mutation_p.T889A|KIAA1217_uc001irv.1_Missense_Mutation_p.T739A|KIAA1217_uc010qda.1_Intron|KIAA1217_uc001irw.2_Missense_Mutation_p.T607A|KIAA1217_uc001irz.2_Missense_Mutation_p.T607A|KIAA1217_uc001irx.2_Missense_Mutation_p.T607A|KIAA1217_uc001iry.2_Missense_Mutation_p.T607A	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	924					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CCAGGAAGCAACCTCCACTCT	0.602													19	21					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28272861	28272861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:28272861G>A	uc009xky.2	-	6	828	c.730C>T	c.(730-732)CGT>TGT	p.R244C	ARMC4_uc010qds.1_5'Flank|ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Missense_Mutation_p.R244C|ARMC4_uc010qdu.1_5'Flank	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	244							binding			ovary(4)|skin(2)	6						ATTTCCCCACGAATTTGTCTC	0.403													16	19					0	0	1	0	0
EPC1	80314	broad.mit.edu	37	10	32576120	32576120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:32576120G>A	uc001iwg.1	-	7	1328	c.1058C>T	c.(1057-1059)CCC>CTC	p.P353L	EPC1_uc001iwi.3_Missense_Mutation_p.P303L|EPC1_uc009xlt.2_Missense_Mutation_p.P303L|EPC1_uc001iwh.1_Missense_Mutation_p.P353L	NM_025209	NP_079485	Q9H2F5	EPC1_HUMAN	enhancer of polycomb 1	353					histone H2A acetylation|histone H4 acetylation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of growth|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear membrane|Piccolo NuA4 histone acetyltransferase complex				ovary(3)|central_nervous_system(1)	4		Prostate(175;0.0199)				CGTCTGTTGGGGAGTAGCAGC	0.473													31	37					0	0	1	0	0
RET	5979	broad.mit.edu	37	10	43612116	43612116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:43612116G>A	uc001jal.2	+	12	2411	c.2221G>A	c.(2221-2223)GCA>ACA	p.A741T	RET_uc001jak.1_Missense_Mutation_p.A741T|RET_uc010qez.1_Missense_Mutation_p.A487T	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	741	Protein kinase.|Cytoplasmic (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	AGTGGTCAAGGCAACGGCCTT	0.532		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				68	93					0	0	1	0	0
GDF10	2662	broad.mit.edu	37	10	48426627	48426627	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:48426627C>T	uc001jfb.2	-	3	1836	c.1380G>A	c.(1378-1380)CGG>CGA	p.R460R	GDF10_uc009xnp.2_Silent_p.R459R	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	460					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						GAACCACATTCCGATTCTCAT	0.587											OREG0020165	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	65	75					0	0	1	0	0
AGAP6	414189	broad.mit.edu	37	10	51769459	51769459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:51769459C>T	uc001jix.3	+	8	1972	c.1574C>T	c.(1573-1575)CCA>CTA	p.P525L		NM_001077665	NP_001071133	Q5VW22	AGAP6_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	525					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			skin(1)	1						GATGACTGGCCAGTTGAGCTC	0.527													91	82					0	0	1	0	0
ASAH2	56624	broad.mit.edu	37	10	52005181	52005181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:52005181C>T	uc001jjd.2	-	2	161	c.161G>A	c.(160-162)AGC>AAC	p.S54N	ASAH2_uc009xos.2_Missense_Mutation_p.S54N	NM_019893	NP_063946	Q9NR71	ASAH2_HUMAN	N-acylsphingosine amidohydrolase 2 isoform a	54	Lumenal (Potential).				apoptosis|ceramide metabolic process|signal transduction	integral to membrane|mitochondrion|plasma membrane	ceramidase activity				0						GGCTGGAGGGCTTTGGGTGGT	0.488													17	19					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55582906	55582906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:55582906G>A	uc001jju.1	-	33	4975	c.4580C>T	c.(4579-4581)CCC>CTC	p.P1527L	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.P1524L|PCDH15_uc010qhw.1_Missense_Mutation_p.P1487L|PCDH15_uc010qhx.1_Missense_Mutation_p.P1458L|PCDH15_uc010qhy.1_Missense_Mutation_p.P1534L|PCDH15_uc010qhz.1_Missense_Mutation_p.P1529L|PCDH15_uc010qia.1_Missense_Mutation_p.P1507L|PCDH15_uc010qib.1_Missense_Mutation_p.P1504L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1527	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CTTATAAAGGGGATTATGGGC	0.368										HNSCC(58;0.16)			32	41					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55591182	55591182	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:55591182C>T	uc001jju.1	-	30	4490	c.4095G>A	c.(4093-4095)AAG>AAA	p.K1365K	PCDH15_uc010qhq.1_Silent_p.K1370K|PCDH15_uc010qhr.1_Silent_p.K1365K|PCDH15_uc010qhs.1_Silent_p.K1377K|PCDH15_uc010qht.1_Silent_p.K1372K|PCDH15_uc010qhu.1_Silent_p.K1365K|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.K1365K|PCDH15_uc010qhw.1_Silent_p.K1328K|PCDH15_uc010qhx.1_Silent_p.K1294K|PCDH15_uc010qhy.1_Silent_p.K1370K|PCDH15_uc010qhz.1_Silent_p.K1365K|PCDH15_uc010qia.1_Silent_p.K1343K|PCDH15_uc010qib.1_Silent_p.K1343K	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1365	Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTTCTCCTCTCTTTTTAATGC	0.483										HNSCC(58;0.16)			29	20					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55755466	55755466	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:55755466C>T	uc001jju.1	-	21	3206	c.2811G>A	c.(2809-2811)CCG>CCA	p.P937P	PCDH15_uc010qhq.1_Silent_p.P942P|PCDH15_uc010qhr.1_Silent_p.P937P|PCDH15_uc010qhs.1_Silent_p.P949P|PCDH15_uc010qht.1_Silent_p.P944P|PCDH15_uc010qhu.1_Silent_p.P937P|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.P937P|PCDH15_uc010qhw.1_Silent_p.P900P|PCDH15_uc010qhx.1_Silent_p.P866P|PCDH15_uc010qhy.1_Silent_p.P942P|PCDH15_uc010qhz.1_Silent_p.P937P|PCDH15_uc010qia.1_Silent_p.P915P|PCDH15_uc010qib.1_Silent_p.P915P|PCDH15_uc001jjw.2_Silent_p.P937P	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	937	Extracellular (Potential).|Cadherin 9.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGACTGCATCCGGAGCCACCA	0.393										HNSCC(58;0.16)			16	29					0	0	1	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62671279	62671279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:62671279C>T	uc001jli.2	-	4	460	c.22G>A	c.(22-24)GAA>AAA	p.E8K	RHOBTB1_uc001jlh.2_Missense_Mutation_p.E8K|RHOBTB1_uc001jlj.2_Missense_Mutation_p.E8K|RHOBTB1_uc001jlk.2_Missense_Mutation_p.E8K|RHOBTB1_uc009xpe.1_Missense_Mutation_p.E8K|RHOBTB1_uc001jlm.2_Missense_Mutation_p.E8K	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	8	Rho-like.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					TTGGGTCTTTCGTAGTCCATG	0.498													92	125					0	0	1	0	0
MYPN	84665	broad.mit.edu	37	10	69881835	69881835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:69881835C>T	uc001jnm.3	+	3	825	c.640C>T	c.(640-642)CCT>TCT	p.P214S	MYPN_uc001jnl.1_Missense_Mutation_p.P214S|MYPN_uc001jnn.3_Intron|MYPN_uc001jno.3_Missense_Mutation_p.P214S|MYPN_uc001jnp.1_Missense_Mutation_p.P214S|MYPN_uc009xps.2_Missense_Mutation_p.P214S|MYPN_uc009xpt.2_Missense_Mutation_p.P214S|MYPN_uc010qit.1_5'UTR|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	214	Interaction with CARP.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						TGTTCCCATCCCTATCCCTGC	0.507													19	17					0	0	1	0	0
DNA2	1763	broad.mit.edu	37	10	70178911	70178911	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:70178911G>A	uc001jof.2	-	19	3105	c.3105C>T	c.(3103-3105)ATC>ATT	p.I1035I	DNA2_uc001jog.1_Silent_p.I711I|DNA2_uc001joh.1_RNA	NM_001080449	NP_001073918	P51530	DNA2L_HUMAN	DNA replication helicase 2 homolog	949					base-excision repair|DNA replication, removal of RNA primer|mitochondrial DNA repair|mitochondrial DNA replication|positive regulation of DNA replication|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	mitochondrial nucleoid|nucleoplasm	5'-flap endonuclease activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|site-specific endodeoxyribonuclease activity, specific for altered base				0						AATCATTGATGATCTTTAATT	0.358													12	21					0	0	1	0	0
CCAR1	55749	broad.mit.edu	37	10	70520836	70520836	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:70520836C>T	uc001joo.2	+	16	2112	c.1993C>T	c.(1993-1995)CGA>TGA	p.R665*	CCAR1_uc001jol.1_RNA|CCAR1_uc001jom.1_Nonsense_Mutation_p.R470*|CCAR1_uc009xpx.1_Nonsense_Mutation_p.R639*|CCAR1_uc001jon.1_Nonsense_Mutation_p.R611*|CCAR1_uc010qiz.1_Nonsense_Mutation_p.R650*|CCAR1_uc010qja.1_Nonsense_Mutation_p.R650*|CCAR1_uc010qjb.1_RNA	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1	665	SAP.				apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			ovary(6)|large_intestine(1)	7						GTTAATAGCCCGATTGACAAA	0.368													15	22					0	0	1	0	0
HK1	3098	broad.mit.edu	37	10	71129366	71129366	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:71129366C>T	uc001jpl.3	+	7	962	c.861C>T	c.(859-861)AAC>AAT	p.N287N	HK1_uc001jpg.3_Silent_p.N275N|HK1_uc001jph.3_Silent_p.N291N|HK1_uc001jpi.3_Silent_p.N291N|HK1_uc001jpj.3_Silent_p.N322N|HK1_uc001jpk.3_Silent_p.N286N|HK1_uc009xqd.2_Silent_p.N165N	NM_000188	NP_000179	P19367	HXK1_HUMAN	hexokinase 1 isoform HKI	287	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane|nucleus	ATP binding|glucokinase activity			ovary(1)	1						GATCCCTCAACCCTGGAAAAC	0.463													9	15					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73447448	73447448	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:73447448C>T	uc001jrx.3	+	18	2408	c.2031C>T	c.(2029-2031)TTC>TTT	p.F677F	CDH23_uc001jry.2_Silent_p.F293F|CDH23_uc001jrz.2_Silent_p.F293F	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	677	Cadherin 7.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CCGCCTACTTCGTCTCCGTGG	0.627													9	27					0	0	1	0	0
ZMYND17	118490	broad.mit.edu	37	10	75187946	75187946	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:75187946G>A	uc001jud.2	-	2	163	c.97C>T	c.(97-99)CTG>TTG	p.L33L	ZMYND17_uc001juc.2_Silent_p.L33L|ZMYND17_uc009xrh.2_Silent_p.L56L|ZMYND17_uc009xrg.2_5'UTR	NM_001024593	NP_001019764	Q4VC12	ZMY17_HUMAN	zinc finger, MYND domain containing 17	33							zinc ion binding			ovary(1)	1	Prostate(51;0.0119)					GAGGGGGTCAGAGGCACAGGG	0.552													30	24					0	0	1	0	0
MBL1P	8512	broad.mit.edu	37	10	81680742	81680742	+	RNA	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:81680742G>A	uc001kbf.2	+	4		c.585G>A			MBL1P_uc001kbg.1_RNA					Homo sapiens mannose-binding protein-A pseudogene (MBL1P1) mRNA sequence.												0						GCCCTCCTGGGAAGATGGGGC	0.537													8	5					0	0	1	0	0
NRG3	10718	broad.mit.edu	37	10	84718754	84718754	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:84718754A>T	uc001kco.2	+	6	1234	c.1207A>T	c.(1207-1209)AAA>TAA	p.K403*	NRG3_uc010qlz.1_Nonsense_Mutation_p.K402*|NRG3_uc001kcp.2_Nonsense_Mutation_p.K182*|NRG3_uc001kcq.2_Nonsense_Mutation_p.K53*|NRG3_uc001kcr.2_Nonsense_Mutation_p.K53*	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	403	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		ACAAAATGGTAAAAGCTACAG	0.408													13	16					0	0	1	0	0
WAPAL	23063	broad.mit.edu	37	10	88260223	88260223	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:88260223G>A	uc001kdo.2	-	3	1219	c.777C>T	c.(775-777)CCC>CCT	p.P259P	WAPAL_uc001kdn.2_Silent_p.P302P|WAPAL_uc009xsw.2_Silent_p.P259P	NM_015045	NP_055860	Q7Z5K2	WAPL_HUMAN	wings apart-like homolog	259	Mediates interaction with the cohesin complex.				cell division|interspecies interaction between organisms|mitosis|negative regulation of chromatin binding|negative regulation of DNA replication|negative regulation of sister chromatid cohesion|protein localization to chromatin|regulation of cohesin localization to chromatin	chromatin|cohesin complex|cytoplasm	protein binding			ovary(1)	1						TCTCCAAAAGGGGATCACTAT	0.358													26	38					0	0	1	0	0
PDLIM1	9124	broad.mit.edu	37	10	97007106	97007106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:97007106G>A	uc001kkh.2	-	5	660	c.551C>T	c.(550-552)CCT>CTT	p.P184L	PDLIM1_uc001kki.2_Missense_Mutation_p.P184L|PDLIM1_uc009xuv.2_Missense_Mutation_p.P184L|PDLIM1_uc001kkj.1_Missense_Mutation_p.P184L	NM_020992	NP_066272	O00151	PDLI1_HUMAN	PDZ and LIM domain 1	184					response to oxidative stress	cytoplasm|cytoskeleton	zinc ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		GCTGCTTGGAGGCTGAGCATG	0.433													22	42					0	0	1	0	0
RRP12	23223	broad.mit.edu	37	10	99126278	99126278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:99126278G>A	uc001knf.2	-	28	3455	c.3316C>T	c.(3316-3318)CGG>TGG	p.R1106W	RRP12_uc001kne.2_Missense_Mutation_p.R121W|RRP12_uc009xvl.2_Missense_Mutation_p.R223W|RRP12_uc009xvm.2_Missense_Mutation_p.R824W|RRP12_uc010qou.1_Missense_Mutation_p.R1045W|RRP12_uc009xvn.2_Missense_Mutation_p.R1006W	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	1106						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		AGCCATGCCCGGCTCCTCTGT	0.607													46	56					0	0	1	0	0
DHDPSL	112817	broad.mit.edu	37	10	99359856	99359856	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:99359856C>T	uc001kny.2	+	5	995	c.636C>T	c.(634-636)ACC>ACT	p.T212T	DHDPSL_uc001knx.2_3'UTR|DHDPSL_uc001knz.2_Intron|PI4K2A_uc010qoy.1_Intron	NM_138413	NP_612422	Q86XE5	HOGA1_HUMAN	DHDPS-like protein isoform 1	212					glyoxylate catabolic process	mitochondrion	4-hydroxy-2-oxoglutarate aldolase activity				0						TTCACAAGACCAGGAAGCAGG	0.552													53	92					0	0	1	0	0
SEC31B	25956	broad.mit.edu	37	10	102257436	102257436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:102257436G>A	uc001krc.1	-	16	2080	c.1978C>T	c.(1978-1980)CCC>TCC	p.P660S	SEC31B_uc010qpo.1_Missense_Mutation_p.P659S|SEC31B_uc001krd.1_Missense_Mutation_p.P197S|SEC31B_uc001krf.1_Missense_Mutation_p.P197S|SEC31B_uc001kre.1_Missense_Mutation_p.P197S|SEC31B_uc001krg.1_Missense_Mutation_p.P229S	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	660					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		CAGAGCTCGGGAAATTTCTCT	0.512													19	21					0	0	1	0	0
FBXW4	6468	broad.mit.edu	37	10	103433355	103433355	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:103433355G>A	uc001kto.2	-	3	778	c.432C>T	c.(430-432)TTC>TTT	p.F144F		NM_022039	NP_071322	P57775	FBXW4_HUMAN	F-box and WD repeat domain containing 4	144					ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	ubiquitin ligase complex				skin(1)	1		Colorectal(252;0.123)		Epithelial(162;4.35e-08)|all cancers(201;1.92e-06)		CATCTGGACGGAACTGGTAGG	0.483													36	44					0	0	1	0	0
PSD	5662	broad.mit.edu	37	10	104175794	104175794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:104175794G>A	uc001kvg.1	-	3	1264	c.737C>T	c.(736-738)TCC>TTC	p.S246F	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Missense_Mutation_p.S246F	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	246					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		GGGGTCCAAGGAGCCATAGAA	0.617													6	12					0	0	1	0	0
GPAM	57678	broad.mit.edu	37	10	113928238	113928238	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:113928238G>A	uc009xxy.1	-	11	1137	c.939C>T	c.(937-939)TTC>TTT	p.F313F	GPAM_uc001kzp.2_Silent_p.F313F|GPAM_uc001kzq.1_Silent_p.F313F	NM_020918	NP_065969	Q9HCL2	GPAT1_HUMAN	mitochondrial glycerol 3-phosphate	313					phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity			ovary(1)|skin(1)	2				Epithelial(162;0.0306)|all cancers(201;0.123)		TGCCTTCCAGGAAGATCTCCA	0.423													29	34					0	0	1	0	0
ACSL5	51703	broad.mit.edu	37	10	114170249	114170249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:114170249C>T	uc001kzs.2	+	8	881	c.740C>T	c.(739-741)CCT>CTT	p.P247L	ACSL5_uc001kzt.2_Missense_Mutation_p.P247L|ACSL5_uc001kzu.2_Missense_Mutation_p.P303L|ACSL5_uc009xxz.2_Missense_Mutation_p.P247L|ACSL5_uc010qrj.1_Missense_Mutation_p.P29L	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	247	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		TTCAGAAAACCTGTGGTAAGT	0.443													13	12					0	0	1	0	0
VWA2	340706	broad.mit.edu	37	10	116045715	116045715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:116045715G>A	uc001lbl.1	+	11	1336	c.1015G>A	c.(1015-1017)GAA>AAA	p.E339K	VWA2_uc001lbk.1_Missense_Mutation_p.E339K|VWA2_uc009xyf.1_Missense_Mutation_p.E35K	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	339						extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		GCTGAGCCTGGAATGCAGGGT	0.627													28	33					0	0	1	0	0
FAM160B1	57700	broad.mit.edu	37	10	116620569	116620569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:116620569C>T	uc001lcb.2	+	15	2344	c.2009C>T	c.(2008-2010)CCA>CTA	p.P670L	FAM160B1_uc001lcc.2_Missense_Mutation_p.P670L	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	670										lung(1)	1						TTCCCTCATCCACACATCCAC	0.388													48	62					0	0	1	0	0
C10orf119	79892	broad.mit.edu	37	10	121612602	121612602	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:121612602G>A	uc001ler.2	-	6	832	c.534C>T	c.(532-534)CCC>CCT	p.P178P	C10orf119_uc001leq.1_Silent_p.P5P|C10orf119_uc001les.1_Silent_p.P5P|C10orf119_uc001let.1_Silent_p.P5P	NM_024834	NP_079110	Q9BTE3	MCMBP_HUMAN	chromosome 10 open reading frame 119	178					cell division|DNA-dependent DNA replication|mitosis|S phase of mitotic cell cycle|sister chromatid cohesion	nucleus	chromatin binding				0		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.0044)		TCTGCTTATTGGGCTGTAGGT	0.458													75	119					0	0	1	0	0
GPR123	84435	broad.mit.edu	37	10	134942990	134942990	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:134942990C>T	uc001llx.3	+	7	2094	c.1658C>T	c.(1657-1659)CCC>CTC	p.P553L	GPR123_uc001llw.2_Missense_Mutation_p.P1272L	NM_001083909	NP_001077378	Q86SQ6	GP123_HUMAN	G protein-coupled receptor 123	553	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		CGAACGGGACCCTGGAAAAAC	0.607													7	17					0	0	1	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643198	1643198	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:1643198A>C	uc009ycy.1	-	1	171	c.84T>G	c.(82-84)TGT>TGG	p.C28W		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	42						keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		cacagcccccacagccggagc	0.274													40	4					0	0	1	0	0
OR2D3	120775	broad.mit.edu	37	11	6942268	6942268	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:6942268G>A	uc010rav.1	+	1	36	c.36G>A	c.(34-36)CAG>CAA	p.Q12Q		NM_001004684	NP_001004684	Q8NGH3	OR2D3_HUMAN	olfactory receptor, family 2, subfamily D,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CAGGTAAACAGGCAAAAATAT	0.403													25	0					0	0	1	0	0
OVCH2	341277	broad.mit.edu	37	11	7727904	7727904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:7727904C>T	uc010rbf.1	-	1	38	c.38G>A	c.(37-39)GGA>GAA	p.G13E		NM_198185	NP_937828			ovochymase 2 precursor												0				Epithelial(150;7.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.197)		AAAGACTATTCCTAGTAGTAA	0.363													3	1					0	0	1	0	0
STK33	65975	broad.mit.edu	37	11	8474411	8474411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:8474411C>T	uc001mgi.1	-	7	1748	c.829G>A	c.(829-831)GAA>AAA	p.E277K	STK33_uc001mgj.1_Missense_Mutation_p.E277K|STK33_uc001mgk.1_Missense_Mutation_p.E277K|STK33_uc010rbn.1_Missense_Mutation_p.E236K|STK33_uc001mgl.3_Missense_Mutation_p.E90K|STK33_uc009yfp.2_5'UTR	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	277	Protein kinase.					Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		AGCATGGCTTCACTCCTACTT	0.368													98	8					0	0	1	0	0
MICALCL	84953	broad.mit.edu	37	11	12315760	12315760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:12315760G>A	uc001mkg.1	+	3	1073	c.782G>A	c.(781-783)CGA>CAA	p.R261Q		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	261					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		CAAGGGGAGCGAAACGTGCCT	0.642													25	1					0	0	1	0	0
PDE3B	5140	broad.mit.edu	37	11	14666552	14666552	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:14666552T>C	uc001mln.2	+	1	1284	c.931T>C	c.(931-933)TGC>CGC	p.C311R	PDE3B_uc001mlm.2_Missense_Mutation_p.C311R|PDE3B_uc010rcr.1_Missense_Mutation_p.C311R|PSMA1_uc001mll.2_5'Flank	NM_000922	NP_000913	Q13370	PDE3B_HUMAN	phosphodiesterase 3B	311					cAMP catabolic process|insulin receptor signaling pathway|negative regulation of lipid catabolic process|platelet activation	cytosol|endoplasmic reticulum|Golgi apparatus|guanyl-nucleotide exchange factor complex|integral to membrane|microsome	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding|protein kinase B binding				0						CTATGGCAGTTGCAAAATATT	0.552													76	7					0	0	1	0	0
FIBIN	387758	broad.mit.edu	37	11	27016610	27016610	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:27016610C>T	uc001mrd.2	+	1	983	c.537C>T	c.(535-537)ATC>ATT	p.I179I		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	179						extracellular region|Golgi apparatus					0						CACTGGACATCTCTGTGGGGC	0.557													35	7					0	0	1	0	0
BBOX1	8424	broad.mit.edu	37	11	27078786	27078786	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:27078786C>T	uc001mre.1	+	4	626	c.258C>T	c.(256-258)TTC>TTT	p.F86F	BBOX1_uc009yih.1_Silent_p.F86F|BBOX1_uc001mrg.1_Silent_p.F86F	NM_003986	NP_003977	O75936	BODG_HUMAN	gamma-butyrobetaine dioxygenase	86					carnitine biosynthetic process	actin cytoskeleton|cytosol|intracellular membrane-bounded organelle	gamma-butyrobetaine dioxygenase activity|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1					Succinic acid(DB00139)|Vitamin C(DB00126)	ACAGTGAATTCCAGGCTGATT	0.408													70	9					0	0	1	0	0
DNAJC24	120526	broad.mit.edu	37	11	31436427	31436427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:31436427G>A	uc001msx.2	+	3	297	c.181G>A	c.(181-183)GAA>AAA	p.E61K	DNAJC24_uc001msw.1_Missense_Mutation_p.E60K|DNAJC24_uc009yjm.2_Missense_Mutation_p.E60K	NM_181706	NP_859057	Q6P3W2	DJC24_HUMAN	zinc finger, CSL domain containing 3	60	J.				protein folding		heat shock protein binding|metal ion binding|unfolded protein binding			breast(2)	2						GAAGTTCATCGAAATTGATCA	0.448													26	3					0	0	1	0	0
F2	2147	broad.mit.edu	37	11	46747431	46747431	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:46747431G>A	uc001ndf.3	+	7	625	c.582G>A	c.(580-582)GCG>GCA	p.A194A	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	194				AM -> MV (in Ref. 9; AA sequence).	activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	TCACTGTAGCGATGACTCCAC	0.428													63	8					0	0	1	0	0
OR4X1	390113	broad.mit.edu	37	11	48285573	48285573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:48285573C>T	uc010rht.1	+	1	161	c.161C>T	c.(160-162)ACC>ATC	p.T54I		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						AAAGTGCTCACCTCCCCCATG	0.488													26	7					0	0	1	0	0
OR5T1	390155	broad.mit.edu	37	11	56043405	56043405	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:56043405C>T	uc001nio.1	+	1	291	c.291C>T	c.(289-291)TTC>TTT	p.F97F		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	97	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					TGGTCAATTTCCTGGCAAAAA	0.373													40	5					0	0	1	0	0
OR9I1	219954	broad.mit.edu	37	11	57886109	57886109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:57886109C>T	uc001nml.1	-	1	808	c.808G>A	c.(808-810)GAA>AAA	p.E270K	OR9Q1_uc001nmj.2_Intron	NM_001005211	NP_001005211	Q8NGQ6	OR9I1_HUMAN	olfactory receptor, family 9, subfamily I,	270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Breast(21;0.0589)				ACTTTGTCTTCCTCCAGAGAT	0.458													42	7					0	0	1	0	0
GANAB	23193	broad.mit.edu	37	11	62396711	62396711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:62396711G>A	uc001nub.2	-	16	1924	c.1891C>T	c.(1891-1893)CCT>TCT	p.P631S	GANAB_uc001ntz.2_5'Flank|GANAB_uc001nua.2_Missense_Mutation_p.P653S|GANAB_uc001nuc.2_Missense_Mutation_p.P534S|GANAB_uc010rma.1_Missense_Mutation_p.P539S|GANAB_uc010rmb.1_Missense_Mutation_p.P517S	NM_198334	NP_938148	Q14697	GANAB_HUMAN	neutral alpha-glucosidase AB isoform 2	631					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|Golgi apparatus|melanosome	carbohydrate binding|glucan 1,3-alpha-glucosidase activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5						AGACACATAGGAATAGAGATC	0.532													42	5					0	0	1	0	0
SLC22A8	9376	broad.mit.edu	37	11	62762219	62762219	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:62762219G>A	uc001nwo.2	-	8	1147	c.1011C>T	c.(1009-1011)ACC>ACT	p.T337T	SLC22A8_uc001nwn.1_3'UTR|SLC22A8_uc001nwp.2_Silent_p.T337T|SLC22A8_uc009yom.2_Silent_p.T214T|SLC22A8_uc010rmm.1_Silent_p.T246T|SLC22A8_uc009yon.2_Silent_p.T337T	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	337	Helical; (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						AGGCAAAACCGGTAGCAAACC	0.488													19	4					0	0	1	0	0
PACS1	55690	broad.mit.edu	37	11	65983617	65983617	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:65983617C>T	uc001oha.1	+	5	822	c.688C>T	c.(688-690)CTG>TTG	p.L230L	PACS1_uc001ogz.1_Silent_p.L230L	NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	230					interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						TGAAGGCGCACTGGTGCTTGG	0.532													32	6					0	0	1	0	0
TRIM49	57093	broad.mit.edu	37	11	89531573	89531573	+	Missense_Mutation	SNP	G	A	A	rs9667365	by1000genomes	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:89531573G>A	uc001pdb.2	-	8	1413	c.1084C>T	c.(1084-1086)CGG>TGG	p.R362W		NM_020358	NP_065091	P0CI25	TRI49_HUMAN	ring finger protein 18	362	B30.2/SPRY.					intracellular	zinc ion binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				TTCTCTTTCCGATACATATTA	0.448													32	49					0	0	1	0	0
HEPHL1	341208	broad.mit.edu	37	11	93822128	93822128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:93822128G>A	uc001pep.2	+	12	2445	c.2288G>A	c.(2287-2289)GGG>GAG	p.G763E	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	763	Plastocyanin-like 5.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				GACGCAAGAGGGGAAAGGTAC	0.532													34	7					0	0	1	0	0
TRPC6	7225	broad.mit.edu	37	11	101362337	101362337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:101362337G>A	uc001pgk.3	-	3	1503	c.1078C>T	c.(1078-1080)CGC>TGC	p.R360C	TRPC6_uc009ywy.2_Intron|TRPC6_uc009ywz.1_Missense_Mutation_p.R360C	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	360	Cytoplasmic (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		AGATTTGGGCGACCGTGATCA	0.438													59	10					0	0	1	0	0
ELMOD1	55531	broad.mit.edu	37	11	107501287	107501287	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:107501287C>T	uc010rvs.1	+	3	566	c.162C>T	c.(160-162)ATC>ATT	p.I54I	ELMOD1_uc001pjm.2_Silent_p.I54I|ELMOD1_uc010rvt.1_Silent_p.I48I	NM_018712	NP_061182	Q8N336	ELMD1_HUMAN	ELMO/CED-12 domain containing 1 isoform 1	54					phagocytosis	cytoskeleton	GTPase activator activity				0		Melanoma(852;0.000288)|Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00301)|all_epithelial(67;0.00304)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)|Epithelial(105;0.00027)|all cancers(92;0.00481)		CCATGAAAATCGGTAAGCCTG	0.408													7	0					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108380560	108380560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:108380560C>T	uc001pkk.2	-	6	5785	c.5674G>A	c.(5674-5676)GAA>AAA	p.E1892K	EXPH5_uc010rvy.1_Missense_Mutation_p.E1704K|EXPH5_uc010rvz.1_Missense_Mutation_p.E1736K|EXPH5_uc010rwa.1_Missense_Mutation_p.E1816K	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1892					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		AACTGTTGTTCTTTCCCAAAG	0.398													39	4					0	0	1	0	0
LAYN	143903	broad.mit.edu	37	11	111420398	111420398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:111420398C>T	uc001plr.1	+	4	799	c.463C>T	c.(463-465)CAT>TAT	p.H155Y	LAYN_uc001plp.1_Missense_Mutation_p.H147Y|LAYN_uc001plq.1_Missense_Mutation_p.H155Y|LAYN_uc001pls.1_Missense_Mutation_p.H147Y|LAYN_uc010rwg.1_Intron|LAYN_uc010rwh.1_Missense_Mutation_p.H3Y	NM_178834	NP_849156	Q6UX15	LAYN_HUMAN	layilin	155	C-type lectin.|Extracellular (Potential).					cell surface|integral to membrane|ruffle	hyaluronic acid binding|sugar binding				0		all_cancers(61;9.06e-10)|all_epithelial(67;1.34e-05)|Melanoma(852;1.74e-05)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.086)		Epithelial(105;1.5e-06)|BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|all cancers(92;2.45e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0476)		GGTCATGTACCATCAGCCATC	0.532													37	8					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117342593	117342593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr11:117342593C>T	uc001prh.1	-	15	3126	c.3124G>A	c.(3124-3126)GAG>AAG	p.E1042K		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	982	Extracellular (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CCGGCCTCCTCAGTGCTGATG	0.582													105	14					0	0	1	0	0
WNK1	65125	broad.mit.edu	37	12	989020	989020	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:989020C>T	uc001qio.3	+	11	3162	c.2655C>T	c.(2653-2655)ATC>ATT	p.I885I	WNK1_uc001qip.3_Intron|WNK1_uc001qir.3_Intron	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	885					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CAGCTGCGATCCCGGGGGTAT	0.552													55	57					0	0	1	0	0
CD27	939	broad.mit.edu	37	12	6554278	6554278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:6554278C>T	uc001qod.2	+	1	228	c.17C>T	c.(16-18)CCC>CTC	p.P6L	LOC678655_uc001qob.2_Intron|LOC678655_uc001qoc.2_Intron|LOC678655_uc009zel.1_Intron|CD27_uc001qoe.2_5'Flank	NM_001242	NP_001233	P26842	CD27_HUMAN	tumor necrosis factor receptor superfamily,	6					anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway|immunoglobulin mediated immune response|induction of apoptosis|positive regulation of B cell differentiation|positive regulation of JNK cascade|release of cytoplasmic sequestered NF-kappaB	extracellular region|integral to plasma membrane	caspase inhibitor activity|protein binding|transmembrane receptor activity				0						CGGCCACATCCCTGGTGGCTG	0.647													8	8					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7653843	7653843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:7653843G>A	uc001qsz.3	-	3	477	c.349C>T	c.(349-351)CAT>TAT	p.H117Y	CD163_uc001qta.3_Missense_Mutation_p.H117Y|CD163_uc009zfw.2_Missense_Mutation_p.H117Y	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	117	SRCR 1.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CAAGAAACATGATCCATCCAA	0.483													58	56					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7653912	7653912	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:7653912A>C	uc001qsz.3	-	3	408	c.280T>G	c.(280-282)TGT>GGT	p.C94G	CD163_uc001qta.3_Missense_Mutation_p.C94G|CD163_uc009zfw.2_Missense_Mutation_p.C94G	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	94	SRCR 1.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GCAGTTGGACATCCCAGCTGG	0.512													46	37					0	0	1	0	0
NANOG	79923	broad.mit.edu	37	12	7947082	7947082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:7947082G>A	uc009zfy.1	+	3	660	c.444G>A	c.(442-444)ATG>ATA	p.M148I		NM_024865	NP_079141	Q9H9S0	NANOG_HUMAN	Nanog homeobox	148	Homeobox.				cell proliferation|embryo development|somatic stem cell maintenance	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				Kidney(36;0.0872)		ACCAGAGAATGAAATCTAAGA	0.373													5	8					0	0	1	0	0
FAM90A1	55138	broad.mit.edu	37	12	8376706	8376706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:8376706C>T	uc001qui.2	-	5	788	c.229G>A	c.(229-231)GAA>AAA	p.E77K	FAM90A1_uc001quh.2_Missense_Mutation_p.E77K	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	77							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		TCCTTCCCTTCCTTTTCCCCA	0.552													50	57					0	0	1	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21172237	21172237	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:21172237G>A	uc010sin.1	+	2	141	c.141G>A	c.(139-141)CCG>CCA	p.P47P	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Intron	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	47						membrane	transporter activity				0						TACACAGACCGAAGTTAATTG	0.328													7	17					0	0	1	0	0
KIAA0528	9847	broad.mit.edu	37	12	22609910	22609910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:22609910G>A	uc001rfq.2	-	23	2947	c.2719C>T	c.(2719-2721)CGG>TGG	p.R907W	KIAA0528_uc010sir.1_Missense_Mutation_p.R763W|KIAA0528_uc010sis.1_Missense_Mutation_p.R958W|KIAA0528_uc010sit.1_Missense_Mutation_p.R960W|KIAA0528_uc010siu.1_Missense_Mutation_p.R958W|KIAA0528_uc001rfr.2_Missense_Mutation_p.R949W	NM_014802	NP_055617	Q86YS7	K0528_HUMAN	hypothetical protein LOC9847	907							protein binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						ATTACCTCCCGAAGAGAAGTA	0.274													13	11					0	0	1	0	0
TMTC1	83857	broad.mit.edu	37	12	29904716	29904717	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:29904716_29904717CC>TT	uc001rjb.2	-	5	970_971	c.496_497GG>AA	c.(496-498)GGG>AAG	p.G166K	TMTC1_uc001rjc.1_Missense_Mutation_p.G166K	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	274						integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)					CTGCTGCTTCCCATTCTCCCGG	0.604													11	9					0	0	1	0	0
ATF1	466	broad.mit.edu	37	12	51173993	51173993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:51173993G>A	uc001rww.3	+	2	343	c.65G>A	c.(64-66)GGA>GAA	p.G22E	ATF1_uc010smu.1_5'UTR	NM_005171	NP_005162	P18846	ATF1_HUMAN	activating transcription factor 1	22					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway				EWSR1/ATF1(323)|FUS/ATF1(4)	soft_tissue(321)|ovary(2)|NS(2)|bone(2)|skin(2)	329						GCAGTTCAGGGAGCTCACATT	0.418			T	EWSR1|FUS	malignant melanoma of soft parts |angiomatoid fibrous histiocytoma 								51	58					0	0	1	0	0
GALNT6	11226	broad.mit.edu	37	12	51751179	51751179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:51751179C>T	uc001ryk.2	-	9	1781	c.1556G>A	c.(1555-1557)GGG>GAG	p.G519E	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Missense_Mutation_p.G519E|GALNT6_uc001ryj.1_Missense_Mutation_p.G84E	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	519	Ricin B-type lectin.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						GAGGGGCTTCCCCCCGCGGTT	0.602													21	29					0	0	1	0	0
KRT74	121391	broad.mit.edu	37	12	52964456	52964456	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:52964456G>A	uc001sap.1	-	5	1053	c.1005C>T	c.(1003-1005)ACC>ACT	p.T335T		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	335	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		TGACCACCTTGGTCTGGTACA	0.592													13	16					0	0	1	0	0
KRT76	51350	broad.mit.edu	37	12	53162536	53162536	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:53162536G>A	uc001sax.2	-	9	1932	c.1878C>T	c.(1876-1878)TCC>TCT	p.S626S		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	626	Tail.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						TCGTGGTCTGGGAGAAGCGGA	0.542													42	69					0	0	1	0	0
ITGB7	3695	broad.mit.edu	37	12	53585397	53585398	+	Missense_Mutation	DNP	AC	CT	CT			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:53585397_53585398AC>CT	uc009zmv.2	-	15	2410_2411	c.2339_2340GT>AG	c.(2338-2340)AGT>AAG	p.S780K	ITGB7_uc001scc.2_Missense_Mutation_p.S780K|ITGB7_uc010snz.1_RNA	NM_000889	NP_000880	P26010	ITB7_HUMAN	integrin, beta 7 precursor	780	Cytoplasmic (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|regulation of immune response	integrin complex	identical protein binding|metal ion binding|receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|breast(1)	8						TCGTGATGGCACTTTTGTAGAG	0.5													30	40					0	0	1	0	0
METTL7B	196410	broad.mit.edu	37	12	56077640	56077640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:56077640G>A	uc010spr.1	+	2	751	c.542G>A	c.(541-543)GGA>GAA	p.G181E		NM_152637	NP_689850	Q6UX53	MET7B_HUMAN	methyltransferase like 7B precursor	181							methyltransferase activity				0						GAACCATATGGAAGCTGGGCC	0.542													32	50					0	0	1	0	0
DTX3	196403	broad.mit.edu	37	12	58000683	58000683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:58000683G>A	uc001sow.1	+	5	374	c.37G>A	c.(37-39)GGC>AGC	p.G13S	DTX3_uc001sov.1_Missense_Mutation_p.G6S|DTX3_uc001sox.1_Missense_Mutation_p.G6S|DTX3_uc001soy.1_Missense_Mutation_p.G6S	NM_178502	NP_848597	Q8N9I9	DTX3_HUMAN	deltex homolog 3	13					Notch signaling pathway	cytoplasm	zinc ion binding			breast(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					AGCCTGTGGAGGCACCTGCAA	0.612													72	110					0	0	1	0	0
DYRK2	8445	broad.mit.edu	37	12	68052204	68052204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:68052204C>T	uc001str.3	+	3	1919	c.1517C>T	c.(1516-1518)CCC>CTC	p.P506L	DYRK2_uc001sts.3_Missense_Mutation_p.P433L	NM_006482	NP_006473	Q92630	DYRK2_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	506	Protein kinase.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|positive regulation of glycogen biosynthetic process|smoothened signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|manganese ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(2)|breast(1)|central_nervous_system(1)	4			Lung(24;6.81e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(7;0.000573)		TGTGATGATCCCCTTTTCCTT	0.612													33	45					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70980945	70980945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:70980945G>A	uc001swb.3	-	7	1529	c.1499C>T	c.(1498-1500)TCC>TTC	p.S500F	PTPRB_uc010sto.1_Missense_Mutation_p.S500F|PTPRB_uc010stp.1_Missense_Mutation_p.S410F|PTPRB_uc001swc.3_Missense_Mutation_p.S718F|PTPRB_uc001swa.3_Missense_Mutation_p.S718F|PTPRB_uc001swd.3_Missense_Mutation_p.S717F|PTPRB_uc009zrr.1_Missense_Mutation_p.S597F	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	500	Fibronectin type-III 6.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GTCAGCTAGGGAAATGATGTA	0.478													24	26					0	0	1	0	0
CEP290	80184	broad.mit.edu	37	12	88508884	88508884	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:88508884G>A	uc001tar.2	-	19	2244	c.1900C>T	c.(1900-1902)CAG>TAG	p.Q634*	CEP290_uc001tat.2_Nonsense_Mutation_p.Q427*|CEP290_uc009zsl.1_RNA	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	634	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						CATTTATTCTGAAATTTGGCT	0.289													3	5					0	0	1	0	0
ATP2B1	490	broad.mit.edu	37	12	90036050	90036050	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:90036050G>A	uc001tbh.2	-	2	472	c.291C>T	c.(289-291)ACC>ACT	p.T97T	ATP2B1_uc001tbg.2_Silent_p.T97T	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	97	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						ATTGAAGAAAGGTTTTTGGCT	0.333													88	129					0	0	1	0	0
FAM71C	196472	broad.mit.edu	37	12	100042400	100042400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:100042400C>T	uc001tgn.2	+	1	870	c.448C>T	c.(448-450)CTT>TTT	p.L150F	ANKS1B_uc001tge.1_Intron|ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Intron	NM_153364	NP_699195	Q8NEG0	FA71C_HUMAN	hypothetical protein LOC196472	150											0				OV - Ovarian serous cystadenocarcinoma(2;0.00733)|Epithelial(2;0.0385)|all cancers(2;0.19)		CTCTTTTTATCTTCAGCTGTG	0.468													13	25					0	0	1	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100482740	100482740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:100482740G>A	uc001tgq.2	-	8	1203	c.974C>T	c.(973-975)TCT>TTT	p.S325F	UHRF1BP1L_uc001tgr.2_Missense_Mutation_p.S325F|UHRF1BP1L_uc001tgp.2_5'UTR	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	325										ovary(2)	2						ATCTAGATGAGAAATCACTAA	0.308													14	16					0	0	1	0	0
MYBPC1	4604	broad.mit.edu	37	12	102067206	102067206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:102067206G>A	uc001tii.2	+	24	2696	c.2594G>A	c.(2593-2595)GGA>GAA	p.G865E	MYBPC1_uc001tig.2_Missense_Mutation_p.G872E|MYBPC1_uc010svq.1_Missense_Mutation_p.G834E|MYBPC1_uc001tih.2_Missense_Mutation_p.G872E|MYBPC1_uc001tij.2_Missense_Mutation_p.G847E|MYBPC1_uc010svr.1_Missense_Mutation_p.G847E|MYBPC1_uc010svs.1_Missense_Mutation_p.G865E|MYBPC1_uc010svt.1_Missense_Mutation_p.G835E|MYBPC1_uc010svu.1_Missense_Mutation_p.G828E|MYBPC1_uc001tik.2_Missense_Mutation_p.G821E|MYBPC1_uc001til.2_5'UTR|MYBPC1_uc001tim.2_5'UTR	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	865	Ig-like C2-type 6.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						TCTTTTTAGGGAAAACCAAGA	0.358													31	47					0	0	1	0	0
NT5DC3	51559	broad.mit.edu	37	12	104171814	104171814	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:104171814G>A	uc010swe.1	-	14	1481	c.1440C>T	c.(1438-1440)TTC>TTT	p.F480F	NT5DC3_uc010swd.1_5'Flank	NM_001031701	NP_001026871	Q86UY8	NT5D3_HUMAN	5'-nucleotidase domain containing 3	480							hydrolase activity|metal ion binding			ovary(2)|skin(1)	3						GGTCTGTGCGGAACAGGCTTC	0.478													19	30					0	0	1	0	0
NUAK1	9891	broad.mit.edu	37	12	106461486	106461486	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:106461486G>A	uc001tlj.1	-	7	2460	c.1080C>T	c.(1078-1080)GTC>GTT	p.V360V		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	360							ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						GCTCTAGCATGACCTCAGAGG	0.552													25	31					0	0	1	0	0
WSCD2	9671	broad.mit.edu	37	12	108642007	108642007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:108642007G>A	uc001tms.2	+	9	2329	c.1585G>A	c.(1585-1587)GAC>AAC	p.D529N	WSCD2_uc001tmt.2_Missense_Mutation_p.D529N|WSCD2_uc001tmu.2_Missense_Mutation_p.D297N	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	529						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						GCTCGAGTATGACCCCTATAC	0.592													31	27					0	0	1	0	0
SVOP	55530	broad.mit.edu	37	12	109332694	109332694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:109332694C>T	uc010sxh.1	-	8	978	c.806G>A	c.(805-807)GGG>GAG	p.G269E		NM_018711	NP_061181	Q8N4V2	SVOP_HUMAN	SV2 related protein	269	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	ion transmembrane transporter activity				0						TTCCTGGTTCCCTGACAGCAC	0.557													50	103					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117964918	117964918	+	Silent	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:117964918T>C	uc001two.2	-	13	1777	c.1722A>G	c.(1720-1722)GAA>GAG	p.E574E		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	603					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ATGGATTTCCTTCCAAGCTGT	0.438													61	74					0	0	1	0	0
RNF10	9921	broad.mit.edu	37	12	120995135	120995135	+	Silent	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:120995135T>C	uc001typ.3	+	5	1179	c.696T>C	c.(694-696)CCT>CCC	p.P232P	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Silent_p.P138P	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	232	RING-type.				negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TCTATCCACCTACTGCAGCCA	0.478													64	73					0	0	1	0	0
MLXIP	22877	broad.mit.edu	37	12	122620069	122620069	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:122620069C>T	uc001ubq.2	+	11	1888	c.1888C>T	c.(1888-1890)CTG>TTG	p.L630L	MLXIP_uc001ubt.2_Silent_p.L237L	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	630					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		CAGCAGCATCCTGGTGACAGA	0.657													6	5					0	0	1	0	0
DIABLO	56616	broad.mit.edu	37	12	122710559	122710559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:122710559C>T	uc010tab.1	-	2	808	c.3G>A	c.(1-3)ATG>ATA	p.M1I	DIABLO_uc010taa.1_5'UTR|DIABLO_uc010tac.1_RNA|DIABLO_uc010tad.1_Missense_Mutation_p.M1I|VPS33A_uc001ucc.2_Intron	NM_019887	NP_063940	Q9NR28	DBLOH_HUMAN	diablo isoform 1 precursor	1					activation of caspase activity by cytochrome c|induction of apoptosis via death domain receptors	CD40 receptor complex|cytosol|internal side of plasma membrane|mitochondrial intermembrane space	protein binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000302)|Epithelial(86;0.00051)|BRCA - Breast invasive adenocarcinoma(302;0.223)		TCAGAGCCGCCATTGTGCAGC	0.682													7	6					0	0	1	0	0
PITPNM2	57605	broad.mit.edu	37	12	123485331	123485331	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:123485331G>A	uc001uej.1	-	9	1357	c.1218C>T	c.(1216-1218)ATC>ATT	p.I406I	PITPNM2_uc001uek.1_Silent_p.I406I|PITPNM2_uc009zxu.1_Silent_p.I406I	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	406					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		CCACCTCTATGATGTTCAGCT	0.617													15	29					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126135452	126135452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:126135452G>A	uc001uhe.1	+	7	1860	c.1852G>A	c.(1852-1854)GAC>AAC	p.D618N	TMEM132B_uc001uhf.1_Missense_Mutation_p.D130N	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	618	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TCAGTTACAGGACGGCAGGAC	0.597													18	25					0	0	1	0	0
TMEM132C	92293	broad.mit.edu	37	12	128899650	128899650	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:128899650C>T	uc001uhs.3	+	1	360	c.123C>T	c.(121-123)ATC>ATT	p.I41I		NM_001136103	NP_001129575	Q8N3T6	T132C_HUMAN	transmembrane protein 132C	153	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						TTTTCCACATCATGGGCAGAG	0.557													6	10					0	0	1	0	0
ANKLE2	23141	broad.mit.edu	37	12	133312044	133312044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:133312044G>A	uc001ukx.2	-	9	1715	c.1648C>T	c.(1648-1650)CTT>TTT	p.L550F	ANKLE2_uc009zyw.1_5'Flank|ANKLE2_uc001uky.3_Missense_Mutation_p.L488F	NM_015114	NP_055929	Q86XL3	ANKL2_HUMAN	ankyrin repeat and LEM domain containing 2	550						cytoplasm|integral to membrane|nuclear envelope					0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.3e-08)|Epithelial(86;1.56e-07)|all cancers(50;4.94e-06)		ACGTGGTGAAGGAAGCCTGCT	0.527													32	47					0	0	1	0	0
GOLGA3	2802	broad.mit.edu	37	12	133393301	133393301	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr12:133393301G>A	uc001ukz.1	-	3	790	c.231C>T	c.(229-231)GAC>GAT	p.D77D	GOLGA3_uc001ula.1_Silent_p.D77D|GOLGA3_uc001ulb.2_Silent_p.D77D	NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3	77	Pro-rich.				intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		ACGACGGAGGGTCTGGGAAGG	0.612													23	34					0	0	1	0	0
TPTE2	93492	broad.mit.edu	37	13	20039417	20039417	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:20039417G>A	uc001umd.2	-	10	865	c.654C>T	c.(652-654)GAC>GAT	p.D218D	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Silent_p.D107D|TPTE2_uc001ume.2_Silent_p.D141D|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	218	Phosphatase tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		TGAGGTCTAGGTCAAATCCAT	0.313													60	7					0	0	1	0	0
FLT3	2322	broad.mit.edu	37	13	28623772	28623772	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:28623772C>T	uc001urw.2	-	7	964	c.882G>A	c.(880-882)GAG>GAA	p.E294E	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Silent_p.E294E	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	294	Extracellular (Potential).|Ig-like C2-type.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	GTCCTATTACCTCCTCGAGTG	0.383			Mis|O		AML|ALL								14	114					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32776606	32776606	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:32776606C>T	uc001utx.2	+	31	4456	c.3960C>T	c.(3958-3960)GCC>GCT	p.A1320A	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1320					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TGTCACTTGCCCTCTTGTCAT	0.493													22	126					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	35926330	35926330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:35926330G>A	uc001uvb.2	+	38	6255	c.6049G>A	c.(6049-6051)GAA>AAA	p.E2017K	NBEA_uc010abi.2_Missense_Mutation_p.E673K	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2017						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TAGAAGAGAGGAAGAAAAGAT	0.333													11	32					0	0	1	0	0
KBTBD6	89890	broad.mit.edu	37	13	41705266	41705266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:41705266C>T	uc001uxu.1	-	1	1671	c.1382G>A	c.(1381-1383)AGA>AAA	p.R461K	KBTBD6_uc010ace.1_Intron|KBTBD6_uc010tfe.1_Missense_Mutation_p.R395K|uc001uxv.1_5'Flank	NM_152903	NP_690867	Q86V97	KBTB6_HUMAN	kelch repeat and BTB (POZ) domain-containing 6	461	Kelch 2.						protein binding			ovary(1)|skin(1)	2		Lung NSC(96;4.52e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		all cancers(112;4.08e-09)|Epithelial(112;4.74e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000131)|GBM - Glioblastoma multiforme(144;0.000876)|BRCA - Breast invasive adenocarcinoma(63;0.0673)		CCACTGGTTTCTCTTAACATT	0.438													25	155					0	0	1	0	0
DLEU7	220107	broad.mit.edu	37	13	51417402	51417402	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:51417402C>T	uc001vez.2	-	1	484	c.381G>A	c.(379-381)TCG>TCA	p.S127S	DLEU7_uc001vex.2_Silent_p.S127S|uc001vey.2_Intron	NM_198989	NP_945340	Q6UYE1	LEU7_HUMAN	deleted in lymphocytic leukemia, 7	127											0		Acute lymphoblastic leukemia(7;1.03e-07)|Lung NSC(96;0.000818)|Breast(56;0.00122)|Prostate(109;0.0047)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.25e-08)		GCTCCGAAGTCGAGTCCACCA	0.716													14	22					0	0	1	0	0
ATP7B	540	broad.mit.edu	37	13	52548411	52548411	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:52548411G>A	uc001vfw.2	-	2	1102	c.945C>T	c.(943-945)ATC>ATT	p.I315I	ATP7B_uc010adv.2_Silent_p.I315I|ATP7B_uc001vfx.2_Silent_p.I315I|ATP7B_uc001vfy.2_Intron|ATP7B_uc010tgt.1_Silent_p.I315I|ATP7B_uc010tgu.1_Silent_p.I315I|ATP7B_uc010tgv.1_Silent_p.I315I|ATP7B_uc010tgw.1_Silent_p.I283I	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	315	HMA 3.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		GAAGTGCCTCGATAGCCCTCT	0.507									Wilson_disease				65	173					0	0	1	0	0
UTP14C	9724	broad.mit.edu	37	13	52603381	52603381	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:52603381C>T	uc001vgb.2	+	2	976	c.441C>T	c.(439-441)ATC>ATT	p.I147I	UTP14C_uc001vga.2_3'UTR|UTP14C_uc001vgc.2_RNA	NM_021645	NP_067677	Q5TAP6	UT14C_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	147					cell differentiation|meiosis|multicellular organismal development|rRNA processing|spermatogenesis	nucleolus|small-subunit processome				ovary(3)|large_intestine(1)|breast(1)	5		Breast(56;0.00173)|Lung NSC(96;0.0108)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.3e-08)		ACCCTATCATCCTGAAGAACC	0.493													31	78					0	0	1	0	0
UTP14C	9724	broad.mit.edu	37	13	52605076	52605077	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:52605076_52605077CC>TT	uc001vgb.2	+	2	2671_2672	c.2136_2137CC>TT	c.(2134-2139)TTCCAA>TTTTAA	p.Q713*	UTP14C_uc001vgc.2_RNA	NM_021645	NP_067677	Q5TAP6	UT14C_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	713					cell differentiation|meiosis|multicellular organismal development|rRNA processing|spermatogenesis	nucleolus|small-subunit processome				ovary(3)|large_intestine(1)|breast(1)	5		Breast(56;0.00173)|Lung NSC(96;0.0108)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.3e-08)		AGAGGGCTTTCCAAAAGCTGAC	0.495													67	182					0	0	1	0	0
DIS3	22894	broad.mit.edu	37	13	73336202	73336202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:73336202G>A	uc001vix.3	-	17	2575	c.2201C>T	c.(2200-2202)CCA>CTA	p.P734L	DIS3_uc001viy.3_Missense_Mutation_p.P704L|DIS3_uc001viz.2_RNA	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a	734					CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding			central_nervous_system(1)	1		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)		GTTTAGATATGGAAAAGTAGG	0.398										Multiple Myeloma(4;0.011)			30	64					0	0	1	0	0
TPP2	7174	broad.mit.edu	37	13	103257169	103257169	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:103257169C>T	uc001vpi.3	+	2	295	c.192C>T	c.(190-192)ATC>ATT	p.I64I		NM_003291	NP_003282	P29144	TPP2_HUMAN	tripeptidyl peptidase II	64					proteolysis	cytoplasm|nucleus	aminopeptidase activity|serine-type endopeptidase activity|tripeptidyl-peptidase activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AACCAAAAATCGTTGATATCA	0.343													21	85					0	0	1	0	0
C13orf39	196541	broad.mit.edu	37	13	103338734	103338734	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:103338734T>G	uc001vpj.2	-	4	448	c.442A>C	c.(442-444)AAC>CAC	p.N148H	C13orf39_uc001vpk.2_Missense_Mutation_p.N148H	NM_001010977	NP_001010977	Q5VZV1	MT21C_HUMAN	hypothetical protein LOC196541	148							methyltransferase activity				0						TATTGAAGGTTTCCCAGGACA	0.418													28	55					0	0	1	0	0
MYO16	23026	broad.mit.edu	37	13	109438085	109438085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:109438085G>A	uc001vqt.1	+	5	670	c.544G>A	c.(544-546)GAA>AAA	p.E182K	MYO16_uc010agk.1_Missense_Mutation_p.E204K	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	182	ANK 4.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CTATCTGGATGAAAATGGTAG	0.373													29	61					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111164294	111164294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:111164294G>A	uc001vqx.2	+	48	5184	c.4895G>A	c.(4894-4896)GGA>GAA	p.G1632E		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1632	Collagen IV NC1.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			ACGGCGGCGGGAGACGAAGGC	0.632													75	33					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111164451	111164451	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:111164451C>A	uc001vqx.2	+	48	5341	c.5052C>A	c.(5050-5052)TTC>TTA	p.F1684L		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1684	Collagen IV NC1.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			AGCAGAGCTTCCAGGGCTCGC	0.637													42	98					9.88483e-10	1.00069e-09	1	1	0
MCF2L	23263	broad.mit.edu	37	13	113730372	113730372	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:113730372G>A	uc001vsu.2	+	12	1594	c.1572G>A	c.(1570-1572)CAG>CAA	p.Q524Q	MCF2L_uc001vsq.2_Silent_p.Q524Q|MCF2L_uc010tjr.1_Silent_p.Q467Q|MCF2L_uc001vsr.2_Silent_p.Q471Q|MCF2L_uc001vss.3_Silent_p.Q465Q|MCF2L_uc010tjs.1_Silent_p.Q465Q|MCF2L_uc001vst.1_Silent_p.Q429Q	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming	497					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				CTGCCCTCCAGGAAATCGAGA	0.522													16	70					0	0	1	0	0
F10	2159	broad.mit.edu	37	13	113798181	113798181	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:113798181G>A	uc001vsx.2	+	6	576	c.519G>A	c.(517-519)GGG>GGA	p.G173G	F10_uc010agq.1_RNA|F10_uc001vsy.2_Silent_p.G173G|F10_uc001vsz.2_Silent_p.G173G	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	173					blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACCCCTGTGGGAAACAGACCC	0.627													25	131					0	0	1	0	0
CUL4A	8451	broad.mit.edu	37	13	113898732	113898732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr13:113898732G>A	uc010tjy.1	+	13	1248	c.1237G>A	c.(1237-1239)GTG>ATG	p.V413M	CUL4A_uc010tjx.1_Missense_Mutation_p.V313M|CUL4A_uc010agu.2_Missense_Mutation_p.V274M|CUL4A_uc010tjz.1_Missense_Mutation_p.V92M	NM_001008895	NP_001008895	Q13619	CUL4A_HUMAN	cullin 4A isoform 1	413					cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	ubiquitin protein ligase binding			central_nervous_system(2)|skin(1)	3	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.112)			AGCAAAGCATGTGGATTCAAA	0.408													6	29					0	0	1	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21796673	21796673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:21796673G>A	uc001wag.2	+	18	2986	c.2986G>A	c.(2986-2988)GAG>AAG	p.E996K	RPGRIP1_uc001wah.2_Missense_Mutation_p.E638K|RPGRIP1_uc001wai.2_Missense_Mutation_p.E322K|RPGRIP1_uc001wak.2_Missense_Mutation_p.E471K|RPGRIP1_uc010aim.2_Missense_Mutation_p.E379K|RPGRIP1_uc001wal.2_Missense_Mutation_p.E355K|RPGRIP1_uc001wam.2_Missense_Mutation_p.E313K	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	996	Interaction with RPGR.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		AAAGGAGAAGGAGCACCAGGT	0.428													26	26					0	0	1	0	0
OR10G2	26534	broad.mit.edu	37	14	22102906	22102906	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:22102906G>A	uc010tmc.1	-	1	93	c.93C>T	c.(91-93)CTC>CTT	p.L31L		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		AGACCAGGAAGAGGAGGCTTC	0.502													47	47					0	0	1	0	0
OR4E2	26686	broad.mit.edu	37	14	22133337	22133337	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:22133337T>C	uc010tmd.1	+	1	41	c.41T>C	c.(40-42)TTC>TCC	p.F14S		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		GAATTTGTCTTCTTGGGACTC	0.373													37	44					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	22192062	22192062	+	RNA	SNP	G	T	T	rs140705243		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:22192062G>T	uc001wbn.2	+	1		c.55G>T								Homo sapiens mRNA for T cell receptor alpha variable 3, partial cds, clone: SEB 36.																		TCTCTGGGGTGGGGCCATATC	0.617													3	43					1	1	1	1	0
DCAF11	80344	broad.mit.edu	37	14	24590118	24590118	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:24590118C>T	uc001wlv.2	+	12	1444	c.1164C>T	c.(1162-1164)TCC>TCT	p.S388S	DCAF11_uc001wlw.2_Silent_p.S388S|DCAF11_uc001wlz.2_Silent_p.S288S|DCAF11_uc001wly.2_Silent_p.S344S|DCAF11_uc001wme.2_Silent_p.S348S|DCAF11_uc010tny.1_Silent_p.S255S|DCAF11_uc001wmd.2_Silent_p.S388S|DCAF11_uc001wmc.2_Silent_p.S288S|DCAF11_uc001wmb.3_Silent_p.S362S|DCAF11_uc001wma.3_Silent_p.S388S	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	388	WD 5.					CUL4 RING ubiquitin ligase complex	protein binding				0						GACGCTTTTCCAGCCGGGAAG	0.517													53	60					0	0	1	0	0
IPO4	79711	broad.mit.edu	37	14	24655610	24655610	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:24655610G>A	uc001wmv.1	-	10	1019	c.888C>T	c.(886-888)TTC>TTT	p.F296F	IPO4_uc001wmt.1_5'Flank|IPO4_uc001wmu.2_5'UTR|IPO4_uc001wmx.1_Silent_p.F160F|IPO4_uc001wmy.1_Silent_p.F160F|IPO4_uc010tnz.1_RNA|IPO4_uc001wmw.1_RNA|IPO4_uc001wmz.1_Silent_p.F296F	NM_024658	NP_078934	Q8TEX9	IPO4_HUMAN	importin 4	296					intracellular protein transport	cytoplasm|nucleus	protein binding|protein transporter activity			kidney(1)	1				GBM - Glioblastoma multiforme(265;0.0087)		CCACAATGGGGAAAAGGGTGT	0.562													66	78					0	0	1	0	0
MIA2	117153	broad.mit.edu	37	14	39716704	39716704	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:39716704G>A	uc001wux.2	+	4	1120	c.926G>A	c.(925-927)TGG>TAG	p.W309*	MIA2_uc010amy.1_Nonsense_Mutation_p.W240*	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	309						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		TCCACTGGTTGGTTTGGTGGA	0.413													21	32					0	0	1	0	0
FANCM	57697	broad.mit.edu	37	14	45633577	45633577	+	Missense_Mutation	SNP	C	T	T	rs146151355		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:45633577C>T	uc001wwd.3	+	10	1696	c.1597C>T	c.(1597-1599)CGT>TGT	p.R533C	FANCM_uc001wwc.2_Missense_Mutation_p.R533C|FANCM_uc010anf.2_Missense_Mutation_p.R507C|FANCM_uc001wwe.3_Intron	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	533	Helicase C-terminal.				DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						GAAACAGTTTCGTGACGGTGG	0.363								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				17	17					0	0	1	0	0
PTGER2	5732	broad.mit.edu	37	14	52781454	52781454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:52781454C>T	uc001wzr.2	+	1	439	c.188C>T	c.(187-189)TCC>TTC	p.S63F		NM_000956	NP_000947	P43116	PE2R2_HUMAN	prostaglandin E receptor 2 (subtype EP2), 53kDa	63	Cytoplasmic (Potential).					integral to plasma membrane	prostaglandin E receptor activity			lung(1)|breast(1)	2	Breast(41;0.0639)|all_epithelial(31;0.0729)				Alprostadil(DB00770)|Iloprost(DB01088)	CGCAGGAGCTCCCTCTCCTTG	0.687													17	29					0	0	1	0	0
PELI2	57161	broad.mit.edu	37	14	56755153	56755153	+	Splice_Site	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:56755153A>G	uc001xch.2	+	4	596	c.310_splice	c.e4-2	p.V104_splice		NM_021255	NP_067078	Q9HAT8	PELI2_HUMAN	pellino 2						innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of protein phosphorylation|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	protein binding			ovary(1)	1						TGATTTACTTAGGTGGGCAGA	0.438													8	9					0	0	1	0	0
PELI2	57161	broad.mit.edu	37	14	56755209	56755209	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:56755209G>C	uc001xch.2	+	4	650	c.364G>C	c.(364-366)GGC>CGC	p.G122R		NM_021255	NP_067078	Q9HAT8	PELI2_HUMAN	pellino 2	122					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of protein phosphorylation|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	protein binding			ovary(1)	1						CACGATTTCTGGCAGCCAGAA	0.498													5	16					0	0	1	0	0
NAA30	122830	broad.mit.edu	37	14	57863570	57863570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:57863570C>T	uc001xcx.3	+	3	1026	c.872C>T	c.(871-873)TCC>TTC	p.S291F	NAA30_uc010trk.1_Missense_Mutation_p.S33F|NAA30_uc010aow.2_RNA	NM_001011713	NP_001011713	Q147X3	NAA30_HUMAN	N-acetyltransferase 12	291	N-acetyltransferase.					cytoplasm	peptide alpha-N-acetyltransferase activity			skin(1)	1						GCCGTGGATTCCAAATACAGG	0.373													22	21					0	0	1	0	0
ACTR10	55860	broad.mit.edu	37	14	58675766	58675766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:58675766G>A	uc001xdf.2	+	4	386	c.283G>A	c.(283-285)GTA>ATA	p.V95I	C14orf37_uc010tro.1_Intron|ACTR10_uc001xdg.2_5'UTR|ACTR10_uc001xdh.2_5'UTR	NM_018477	NP_060947	Q9NZ32	ARP10_HUMAN	uncharacterized hypothalamus protein HARP11	95						cytoplasm				central_nervous_system(1)	1						TATCGAATCGGTATTATGTCC	0.333													34	44					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65270363	65270363	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:65270363C>T	uc001xht.2	-	3	490	c.436G>A	c.(436-438)GTC>ATC	p.V146I	SPTB_uc001xhr.2_Missense_Mutation_p.V146I|SPTB_uc001xhs.2_Missense_Mutation_p.V146I|SPTB_uc001xhu.2_Missense_Mutation_p.V146I	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	146	CH 1.|Actin-binding.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		AGGCCCAGGACCAGGCGGTGG	0.597													26	36					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70633874	70633874	+	Silent	SNP	C	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:70633874C>A	uc001xly.2	-	2	2020	c.1266G>T	c.(1264-1266)GGG>GGT	p.G422G	SLC8A3_uc001xlw.2_Silent_p.G422G|SLC8A3_uc001xlx.2_Silent_p.G422G|SLC8A3_uc001xlz.2_Silent_p.G422G|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	422	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		ACATGTCTCCCCCTTTCCTCA	0.502													4	103					0.184627	0.185003	1	1	0
ENTPD5	957	broad.mit.edu	37	14	74439639	74439639	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:74439639G>A	uc010tuo.1	-	13	1286	c.975C>T	c.(973-975)TCC>TCT	p.S325S	ENTPD5_uc001xpi.2_Silent_p.S325S	NM_001249	NP_001240	O75356	ENTP5_HUMAN	ectonucleoside triphosphate diphosphohydrolase 5	325					'de novo' posttranslational protein folding|ATP metabolic process|cell growth|cell proliferation|glycolysis|protein N-linked glycosylation|regulation of phosphatidylinositol 3-kinase cascade	endoplasmic reticulum lumen	guanosine-diphosphatase activity|uridine-diphosphatase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00394)		AAGCATAGAAGGAACCTCTCT	0.537													70	108					0	0	1	0	0
ALDH6A1	4329	broad.mit.edu	37	14	74531550	74531550	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:74531550C>G	uc001xpo.2	-	11	1577	c.1478G>C	c.(1477-1479)GGA>GCA	p.G493A	C14orf45_uc010tup.1_3'UTR|C14orf45_uc001xpm.1_Intron|ALDH6A1_uc010asa.2_Missense_Mutation_p.G338A|ALDH6A1_uc010tuq.1_Missense_Mutation_p.G480A	NM_005589	NP_005580	Q02252	MMSA_HUMAN	aldehyde dehydrogenase 6A1 precursor	493						mitochondrial matrix|nucleus	fatty-acyl-CoA binding|malonate-semialdehyde dehydrogenase (acetylating) activity|methylmalonate-semialdehyde dehydrogenase (acylating) activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00354)	NADH(DB00157)	ATTGGTGTCTCCCCTGAAGGA	0.403													15	17					0	0	1	0	0
FCF1	51077	broad.mit.edu	37	14	75200790	75200790	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:75200790C>T	uc001xqh.2	+	7	516	c.465C>T	c.(463-465)TAC>TAT	p.Y155Y	FCF1_uc001xqf.1_Silent_p.Y140Y|FCF1_uc001xqg.2_RNA|FCF1_uc001xqi.2_RNA	NM_015962	NP_057046	Q9Y324	FCF1_HUMAN	FCF1 small subunit	155	PINc.				rRNA processing	nucleolus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0037)		ATAAGTGTTACATTGTGGCCA	0.443													12	15					0	0	1	0	0
STON2	85439	broad.mit.edu	37	14	81736965	81736965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:81736965G>A	uc010tvu.1	-	5	2863	c.2662C>T	c.(2662-2664)CCC>TCC	p.P888S	STON2_uc001xvk.1_Intron|STON2_uc010tvt.1_Missense_Mutation_p.P685S	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	888					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		AGGGTAGTGGGGTGAACAAAT	0.483													47	64					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86088558	86088558	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:86088558G>C	uc001xvr.2	+	2	1467	c.700G>C	c.(700-702)GAA>CAA	p.E234Q	FLRT2_uc010atd.2_Missense_Mutation_p.E234Q	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	234	Extracellular (Potential).|LRR 8.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CAAGCTCAAGGAATTTTCAAT	0.517													43	46					0	0	1	0	0
GPR68	8111	broad.mit.edu	37	14	91700825	91700825	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:91700825G>A	uc001xzg.2	-	2	911	c.570C>T	c.(568-570)TTC>TTT	p.F190F	GPR68_uc001xzh.2_Silent_p.F200F	NM_003485	NP_003476	Q15743	OGR1_HUMAN	G protein-coupled receptor 68	190	Helical; Name=5; (Potential).				inflammatory response	integral to plasma membrane	G-protein coupled receptor activity			kidney(1)	1		all_cancers(154;0.0555)		COAD - Colon adenocarcinoma(157;0.21)		AGCCCACCAGGAAGCGGTAGT	0.647													13	14					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91779982	91779982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:91779982C>T	uc010aty.2	-	15	2277	c.2178G>A	c.(2176-2178)ATG>ATA	p.M726I		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	726	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TCTCCCTCTCCATCTGTGCCA	0.612													24	43					0	0	1	0	0
C14orf109	26175	broad.mit.edu	37	14	93652850	93652850	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:93652850T>A	uc010auo.2	+	2	702	c.344T>A	c.(343-345)GTA>GAA	p.V115E	MOAP1_uc001ybj.2_5'Flank|C14orf109_uc001ybk.3_Missense_Mutation_p.V77E	NM_001098621	NP_001092091	Q8N6I4	CN109_HUMAN	hypothetical protein LOC26175 isoform 1	109	Helical; (Potential).					integral to membrane					0		all_cancers(154;0.11)|Acute lymphoblastic leukemia(33;0.0488)		Epithelial(152;0.176)|all cancers(159;0.197)|COAD - Colon adenocarcinoma(157;0.202)		ATTTTTCTGGTACCTTACTTA	0.443													25	29					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94744970	94744970	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:94744970C>T	uc001ycs.1	+	25	2766	c.2612C>T	c.(2611-2613)TCC>TTC	p.S871F		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	871						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						TCCAGAAAATCCAATCCTTAA	0.249													10	7					0	0	1	0	0
BDKRB1	623	broad.mit.edu	37	14	96730346	96730346	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:96730346C>T	uc001yfh.2	+	3	535	c.327C>T	c.(325-327)CTC>CTT	p.L109L	BDKRB1_uc010avn.2_Silent_p.L109L	NM_000710	NP_000701	P46663	BKRB1_HUMAN	bradykinin receptor B1	109	Extracellular (Potential).				elevation of cytosolic calcium ion concentration	endoplasmic reticulum|integral to plasma membrane	bradykinin receptor activity			ovary(3)	3		all_cancers(154;0.0677)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.208)|Epithelial(152;0.226)		GAGCCCTCCTCTGCCGTGTCA	0.567													31	42					0	0	1	0	0
SETD3	84193	broad.mit.edu	37	14	99879297	99879297	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:99879297G>A	uc001ygc.2	-	8	1010	c.840C>T	c.(838-840)ACC>ACT	p.T280T	SETD3_uc001ygd.2_Silent_p.T280T|SETD3_uc001ygf.2_Silent_p.T280T	NM_032233	NP_115609	Q86TU7	SETD3_HUMAN	SET domain containing 3 isoform a	280	SET.				peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|peptidyl-lysine trimethylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone methyltransferase activity (H3-K36 specific)|transcription coactivator activity				0		all_cancers(154;0.224)|all_epithelial(191;0.0644)|Melanoma(154;0.0866)				CCAGGCCGTTGGTGTGGTTAC	0.512													16	27					0	0	1	0	0
TECPR2	9895	broad.mit.edu	37	14	102894633	102894633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:102894633C>T	uc001ylw.1	+	7	1146	c.998C>T	c.(997-999)TCG>TTG	p.S333L	TECPR2_uc010awl.2_Missense_Mutation_p.S333L|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	333							protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						GTGTCTGTTTCGTGCACAGAA	0.318													12	14					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	103707844	103707844	+	RNA	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:103707844G>A	uc001ymo.1	+	1		c.48G>A								full-length cDNA clone CS0DE012YF10 of Placenta of Homo sapiens (human).																		GAATGCAAAGGGAAAGAGGAG	0.413													2	1					0	0	1	0	0
PPP1R13B	23368	broad.mit.edu	37	14	104206730	104206730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:104206730G>A	uc001yof.1	-	12	2306	c.2023C>T	c.(2023-2025)CTC>TTC	p.L675F	PPP1R13B_uc010awv.1_RNA|PPP1R13B_uc001yog.1_Missense_Mutation_p.L542F	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1	675	Pro-rich.				apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				ATGGGCGTGAGCTTGGTGGGG	0.657													51	83					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106091552	106091552	+	RNA	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:106091552G>A	uc010tyt.1	-	3647		c.61956C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						GTCCCCCCAGGAACTCAGGTG	0.627													14	80					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106518850	106518850	+	RNA	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr14:106518850C>T	uc010tyt.1	-	1629		c.32688G>A								Parts of antibodies, mostly variable regions.												0						AGCCCCAATTCCATGGTGAGT	0.498													41	71					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20496705	20496705	+	RNA	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:20496705G>A	uc001ytf.1	+	6		c.758G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		GTTTGAACATGAAAGAAATGT	0.423													8	38					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20496721	20496721	+	RNA	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:20496721C>T	uc001ytf.1	+	6		c.774C>T								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		AATGTACCTTCTTTCACTCTG	0.403													4	32					0	0	1	0	0
BCL8	606	broad.mit.edu	37	15	20874853	20874853	+	Silent	SNP	T	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:20874853T>A	uc010tze.1	-	3	492	c.285A>T	c.(283-285)ATA>ATT	p.I95I	BCL8_uc010tzd.1_RNA	NR_027992				RecName: Full=Putative protein BCL8;												0						CCAGTAGTAATATTTTAAGGT	0.333													13	104					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	22440411	22440411	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:22440411G>A	uc001yug.2	-	1	455	c.436C>T	c.(436-438)CAG>TAG	p.Q146*						full-length cDNA clone CS0DI014YE21 of Placenta Cot 25-normalized of Homo sapiens (human).																		TATTTCTTCTGAATTTTTTTA	0.483													4	7					0	0	1	0	0
NIPA1	123606	broad.mit.edu	37	15	23048909	23048909	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:23048909C>A	uc001yvc.2	-	5	935	c.910G>T	c.(910-912)GGG>TGG	p.G304W	NIPA1_uc001yvd.2_Missense_Mutation_p.G134W|NIPA1_uc001yve.2_Missense_Mutation_p.G229W	NM_144599	NP_653200	Q7RTP0	NIPA1_HUMAN	non-imprinted in Prader-Willi/Angelman syndrome	304	Helical; (Potential).				cell death	early endosome|integral to membrane|plasma membrane					0		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;4.18e-06)|Epithelial(43;3.97e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00165)		AGGACAATCCCCACGGAGACG	0.507													16	12					3.45872e-05	3.4835e-05	1	1	0
MKRN3	7681	broad.mit.edu	37	15	23811623	23811623	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:23811623A>T	uc001ywh.3	+	1	1170	c.694A>T	c.(694-696)AGG>TGG	p.R232W	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Missense_Mutation_p.R232W	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	232						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		AGAGACTGAGAGGAAGCAGAT	0.577													19	22					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921413	24921413	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:24921413G>A	uc001ywo.2	+	1	873	c.399G>A	c.(397-399)CCG>CCA	p.P133P		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	133					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CACGTGAGCCGGCGGTCAAGG	0.632													17	28					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922053	24922053	+	Missense_Mutation	SNP	G	A	A	rs34629208	byFrequency	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:24922053G>A	uc001ywo.2	+	1	1513	c.1039G>A	c.(1039-1041)GAT>AAT	p.D347N		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	347	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		ATTGCTGTGGGATCGAGGTGA	0.577													21	39					0	0	1	0	0
GABRB3	2562	broad.mit.edu	37	15	26825533	26825533	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:26825533C>T	uc001zaz.2	-	6	757	c.615G>A	c.(613-615)AGG>AGA	p.R205R	GABRB3_uc010uae.1_Silent_p.R120R|GABRB3_uc001zba.2_Silent_p.R205R|GABRB3_uc001zbb.2_Silent_p.R261R	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	205	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GGAGCTCAATCCTTTCCACTC	0.547													29	44					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34110818	34110818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:34110818G>A	uc001zhi.2	+	76	10709	c.10639G>A	c.(10639-10641)GAA>AAA	p.E3547K	RYR3_uc010bar.2_Missense_Mutation_p.E3542K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3547					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GGAAGAGACAGAAAAACAACC	0.488													14	18					0	0	1	0	0
C15orf55	256646	broad.mit.edu	37	15	34647265	34647265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:34647265C>T	uc001zif.2	+	6	1477	c.1322C>T	c.(1321-1323)TCC>TTC	p.S441F	C15orf55_uc010ucc.1_Missense_Mutation_p.S469F|C15orf55_uc010ucd.1_Missense_Mutation_p.S459F	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	441						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		GATCTGCTGTCCCCAGAAAAA	0.463			T	BRD3|BRD4	lethal midline carcinoma								44	63					0	0	1	0	0
FAM98B	283742	broad.mit.edu	37	15	38757556	38757556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:38757556G>A	uc001zkb.1	+	3	339	c.304G>A	c.(304-306)GAT>AAT	p.D102N	FAM98B_uc001zkc.2_Missense_Mutation_p.D102N	NM_001042429	NP_001035894	Q52LJ0	FA98B_HUMAN	family with sequence similarity 98, member B	102						tRNA-splicing ligase complex	protein binding			ovary(1)	1		all_cancers(109;3.11e-17)|all_epithelial(112;2.64e-15)|Lung NSC(122;2.11e-11)|all_lung(180;5.61e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;9e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0209)		CATATCAGGAGATATTAAAGA	0.308													10	13					0	0	1	0	0
RASGRP1	10125	broad.mit.edu	37	15	38811572	38811572	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:38811572G>A	uc001zke.3	-	4	505	c.327C>T	c.(325-327)CTC>CTT	p.L109L	RASGRP1_uc010bbe.2_RNA|RASGRP1_uc010bbf.2_5'UTR|RASGRP1_uc010bbg.2_5'UTR|RASGRP1_uc001zkd.3_Silent_p.L109L	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	109	Ras exchanger motif region; required for transforming activity (By similarity).|N-terminal Ras-GEF.				cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		CATCCTTATAGGTAGGGCTGT	0.373													27	41					0	0	1	0	0
MGA	23269	broad.mit.edu	37	15	42028727	42028727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:42028727C>T	uc010ucy.1	+	13	4446	c.4265C>T	c.(4264-4266)TCC>TTC	p.S1422F	MGA_uc010ucz.1_Missense_Mutation_p.S1422F|MGA_uc010uda.1_Intron	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	1422						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		GGTCCATTGTCCCCTGGGAAA	0.468													22	25					0	0	1	0	0
SPTBN5	51332	broad.mit.edu	37	15	42172360	42172360	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:42172360C>T	uc001zos.2	-	14	3037	c.2704G>A	c.(2704-2706)GAG>AAG	p.E902K		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	937	Spectrin 7.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GGCTGTACCTCATATTTGAGC	0.587													6	7					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48756172	48756172	+	Silent	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:48756172A>G	uc001zwx.1	-	41	5317	c.4989T>C	c.(4987-4989)TGT>TGC	p.C1663C	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1663	EGF-like 28; calcium-binding.		C -> R (in MFS).|C -> Y (in MFS).		heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		CGGTGTTGTAACATGTCCCTG	0.289													15	27					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54307882	54307882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:54307882G>A	uc002ack.2	+	1	2782	c.2782G>A	c.(2782-2784)GAT>AAT	p.D928N		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	928					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TCCAGCAGATGATATGGTTAG	0.388													24	30					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54793064	54793064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:54793064C>T	uc002ack.2	+	20	5189	c.5189C>T	c.(5188-5190)TCT>TTT	p.S1730F		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1730	MHD1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GCTCTCTTTTCTTGCTCCGTG	0.428													17	33					0	0	1	0	0
VPS13C	54832	broad.mit.edu	37	15	62212314	62212314	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:62212314G>A	uc002agz.2	-	57	7503	c.7429C>T	c.(7429-7431)CTA>TTA	p.L2477L	VPS13C_uc002aha.2_Silent_p.L2434L|VPS13C_uc002ahb.1_Silent_p.L2477L|VPS13C_uc002ahc.1_Silent_p.L2434L|VPS13C_uc002ahd.1_5'Flank	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	2477					protein localization					ovary(2)	2						AATATAGATAGGTTCCCTTGA	0.433													23	34					0	0	1	0	0
TRIP4	9325	broad.mit.edu	37	15	64686287	64686287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:64686287C>T	uc002anm.2	+	2	287	c.244C>T	c.(244-246)CCT>TCT	p.P82S		NM_016213	NP_057297	Q15650	TRIP4_HUMAN	thyroid hormone receptor interactor 4	82					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	ligand-dependent nuclear receptor binding|transcription coactivator activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3						GATTTCGGATCCTTTGCAGCA	0.333													8	15					0	0	1	0	0
IGDCC4	57722	broad.mit.edu	37	15	65682665	65682665	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:65682665G>A	uc002aou.1	-	13	2446	c.2236C>T	c.(2236-2238)CAG>TAG	p.Q746*	IGDCC4_uc002aot.1_Nonsense_Mutation_p.Q334*	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	746	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						GGTCCCCTCTGGATAGGCATG	0.418													12	18					0	0	1	0	0
MAP2K1	5604	broad.mit.edu	37	15	66729162	66729162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:66729162C>T	uc010bhq.2	+	3	845	c.370C>T	c.(370-372)CCG>TCG	p.P124S	MAP2K1_uc010ujp.1_Missense_Mutation_p.P102S	NM_002755	NP_002746	Q02750	MP2K1_HUMAN	mitogen-activated protein kinase kinase 1	124	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|plasma membrane	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						GTGCAACTCTCCGTACATCGT	0.507									Cardiofaciocutaneous_syndrome				26	29					0	0	1	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79058501	79058501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:79058501G>A	uc002bej.3	-	19	3963	c.3752C>T	c.(3751-3753)TCC>TTC	p.S1251F	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1251					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						ACTAGGAGAGGAGTGGGTGCT	0.657													11	10					0	0	1	0	0
RASGRF1	5923	broad.mit.edu	37	15	79382679	79382679	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:79382679G>A	uc002beq.2	-	1	537	c.162C>T	c.(160-162)TTC>TTT	p.F54F	RASGRF1_uc002bep.2_Silent_p.F54F|RASGRF1_uc002ber.3_Silent_p.F54F	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	54	PH 1.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						AGTCGCTCTCGAAGTAGAAGA	0.647													30	43					0	0	1	0	0
EFTUD1	79631	broad.mit.edu	37	15	82444036	82444036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:82444036G>A	uc002bgt.1	-	18	2928	c.2759C>T	c.(2758-2760)ACC>ATC	p.T920I	EFTUD1_uc002bgs.1_Missense_Mutation_p.T291I|EFTUD1_uc002bgu.1_Missense_Mutation_p.T869I	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	920					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						ACCAGAACAGGTTTCATTTTC	0.453													5	111					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94928743	94928743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:94928743C>T	uc002btj.2	+	13	1842	c.1777C>T	c.(1777-1779)CCC>TCC	p.P593S	MCTP2_uc002bti.2_Missense_Mutation_p.P593S|MCTP2_uc010boj.2_Missense_Mutation_p.P322S|MCTP2_uc010bok.2_Missense_Mutation_p.P593S|MCTP2_uc002btk.3_Missense_Mutation_p.P181S|MCTP2_uc002btl.2_Missense_Mutation_p.P181S	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	593					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			AGTTGCCATTCCCTTGCTGTC	0.353													35	42					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	95001390	95001390	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:95001390G>A	uc002btj.2	+	19	2340	c.2275G>A	c.(2275-2277)GAA>AAA	p.E759K	MCTP2_uc010boj.2_Missense_Mutation_p.E488K|MCTP2_uc010bok.2_Missense_Mutation_p.E704K|MCTP2_uc002btl.2_Missense_Mutation_p.E347K	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	759					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			GGGGTTGATTGAAAGAATCTA	0.299													17	14					0	0	1	0	0
SYNM	23336	broad.mit.edu	37	15	99670140	99670140	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:99670140C>T	uc002bup.2	+	6	1695	c.1575C>T	c.(1573-1575)TTC>TTT	p.F525F	SYNM_uc002buo.2_Silent_p.F525F|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	525	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						AGAAAATGTTCGATTCTAAAG	0.448													10	6					0	0	1	0	0
MAPK8IP3	23162	broad.mit.edu	37	16	1817665	1817665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:1817665G>A	uc002cmk.2	+	27	3455	c.3335G>A	c.(3334-3336)AGG>AAG	p.R1112K	MAPK8IP3_uc002cml.2_Missense_Mutation_p.R1106K|MAPK8IP3_uc010uvl.1_Missense_Mutation_p.R1113K	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	1112					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						TCCACCCTGAGGCTCTACCAT	0.637													23	27					0	0	1	0	0
TSC2	7249	broad.mit.edu	37	16	2122932	2122932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:2122932C>T	uc002con.2	+	21	2409	c.2303C>T	c.(2302-2304)CCA>CTA	p.P768L	TSC2_uc010bsd.2_Missense_Mutation_p.P768L|TSC2_uc002coo.2_Missense_Mutation_p.P768L|TSC2_uc010uvv.1_Missense_Mutation_p.P731L|TSC2_uc010uvw.1_Missense_Mutation_p.P719L|TSC2_uc002cop.2_Missense_Mutation_p.P568L	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	768					cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				GCCGTGGTTCCAGTGCTGACA	0.557			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				35	61					0	0	1	0	0
TSC2	7249	broad.mit.edu	37	16	2133790	2133790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:2133790G>A	uc002con.2	+	33	4084	c.3978G>A	c.(3976-3978)ATG>ATA	p.M1326I	TSC2_uc010bsd.2_Missense_Mutation_p.M1303I|TSC2_uc002coo.2_Missense_Mutation_p.M1259I|TSC2_uc010uvv.1_Missense_Mutation_p.M1223I|TSC2_uc010uvw.1_Missense_Mutation_p.M1211I|TSC2_uc002cop.2_Missense_Mutation_p.M1082I|TSC2_uc002coq.2_Missense_Mutation_p.M101I|TSC2_uc002cor.2_Missense_Mutation_p.M27I	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	1326					cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				CGCTAGGCATGGACAGGCGCA	0.672			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				9	23					0	0	1	0	0
AMDHD2	51005	broad.mit.edu	37	16	2578260	2578260	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:2578260C>T	uc002cqq.2	+	7	838	c.741C>T	c.(739-741)ATC>ATT	p.I247I	AMDHD2_uc002cqp.2_Silent_p.I247I|AMDHD2_uc010uwc.1_Silent_p.I247I|AMDHD2_uc010uwd.1_Silent_p.I11I	NM_015944	NP_057028	Q9Y303	NAGA_HUMAN	amidohydrolase domain containing 2 isoform 1	247					N-acetylglucosamine metabolic process		N-acetylglucosamine-6-phosphate deacetylase activity			skin(2)|large_intestine(1)|breast(1)	4						ACCCAGGCATCGTGGGGCTCC	0.711													25	66					0	0	1	0	0
GLYR1	84656	broad.mit.edu	37	16	4867659	4867659	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:4867659G>A	uc002cxx.3	-	10	883	c.846C>T	c.(844-846)ATC>ATT	p.I282I	GLYR1_uc002cxy.2_RNA|GLYR1_uc002cxz.1_Silent_p.I196I|GLYR1_uc002cya.2_Silent_p.I282I|GLYR1_uc010uxv.1_Silent_p.I201I	NM_032569	NP_115958	Q49A26	GLYR1_HUMAN	cytokine-like nuclear factor n-pac	282	NAD (By similarity).				pentose-phosphate shunt	nucleus	coenzyme binding|DNA binding|methylated histone residue binding|phosphogluconate dehydrogenase (decarboxylating) activity				0						AGTTGGAGACGATTCCACTTC	0.502													56	61					0	0	1	0	0
SEC14L5	9717	broad.mit.edu	37	16	5058443	5058443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:5058443G>A	uc002cye.2	+	14	1774	c.1594G>A	c.(1594-1596)GGA>AGA	p.G532R		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	532	GOLD.					integral to membrane|intracellular	transporter activity				0						GATCCTGGAAGGAGAGTCGGT	0.647													9	18					0	0	1	0	0
TEKT5	146279	broad.mit.edu	37	16	10721443	10721443	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:10721443G>A	uc002czz.1	-	7	1527	c.1455C>T	c.(1453-1455)ACC>ACT	p.T485T		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	485					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						GCGGTGCTCAGGTGTGGCCCA	0.552													57	45					0	0	1	0	0
ERCC4	2072	broad.mit.edu	37	16	14014025	14014026	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:14014025_14014026GG>AA	uc002dce.2	+	1	12_13	c.3_4GG>AA	c.(1-6)ATGGAG>ATAAAG	p.1_2ME>IK	ERCC4_uc010bva.2_Missense_Mutation_p.1_2ME>IK	NM_005236	NP_005227	Q92889	XPF_HUMAN	excision repair cross-complementing rodent	1_2					double-strand break repair via homologous recombination|meiotic mismatch repair|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|resolution of meiotic recombination intermediates|telomere maintenance via telomere shortening|transcription-coupled nucleotide-excision repair	nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair factor 1 complex	damaged DNA binding|protein C-terminus binding|protein N-terminus binding|single-stranded DNA binding|single-stranded DNA specific endodeoxyribonuclease activity			lung(4)|ovary(3)|skin(2)|pancreas(1)	10						GAGCTTCCATGGAGTCAGGGCA	0.629			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				25	49					0	0	1	0	0
NDE1	54820	broad.mit.edu	37	16	15761167	15761167	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:15761167C>T	uc002ddt.1	+	2	151	c.108C>T	c.(106-108)CTC>CTT	p.L36L	NDE1_uc010uzy.1_Silent_p.L36L|NDE1_uc002dds.2_Silent_p.L36L	NM_017668	NP_060138	Q9NXR1	NDE1_HUMAN	nuclear distribution gene E homolog 1	36	Self-association (By similarity).|Potential.				cell differentiation|cell division|centrosome duplication|establishment of chromosome localization|establishment of mitotic spindle orientation|G2/M transition of mitotic cell cycle|mitotic prometaphase|nervous system development	cleavage furrow|condensed chromosome kinetochore|cytosol|microtubule|spindle pole centrosome	microtubule binding			ovary(1)	1						AAGAGGAACTCCGAGAATTCC	0.348													29	42					0	0	1	0	0
PDILT	204474	broad.mit.edu	37	16	20384232	20384232	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:20384232G>A	uc002dhc.1	-	7	1033	c.810C>T	c.(808-810)TCC>TCT	p.S270S		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	270					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						TGTGCAACTCGGAAATCAGAT	0.458													22	47					0	0	1	0	0
SLC7A5P2	387254	broad.mit.edu	37	16	21531289	21531289	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:21531289A>G	uc002djd.2	-	1	477	c.398T>C	c.(397-399)CTC>CCC	p.L133P	uc002diq.3_Intron|LOC100271836_uc002dja.2_RNA|LOC100271836_uc002djb.2_RNA	NR_002594				RecName: Full=Putative L-type amino acid transporter 1-like protein MLAS; AltName: Full=hLAT1 3-transmembrane protein MLAS;          Short=hLAT1 3TM MLAS;												0						CTCGATCCAGAGCTTGAGGAA	0.642													4	31					0	0	1	0	0
VWA3A	146177	broad.mit.edu	37	16	22167174	22167174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:22167174C>T	uc010vbq.1	+	33	3602	c.3506C>T	c.(3505-3507)TCC>TTC	p.S1169F	VWA3A_uc010bxd.2_RNA|VWA3A_uc002dkg.3_Missense_Mutation_p.S247F|VWA3A_uc010bxe.1_Missense_Mutation_p.S271F	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	1169						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		CCCACCAGATCCCAACTCCAG	0.532													38	27					0	0	1	0	0
LOC100132247	100132247	broad.mit.edu	37	16	22545867	22545868	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:22545867_22545868CC>TT	uc010bxg.2	+	9	1745_1746	c.1563_1564CC>TT	c.(1561-1566)GCCCTT>GCTTTT	p.L522F	LOC100132247_uc010vbv.1_Missense_Mutation_p.L522F|LOC100132247_uc010vbw.1_Intron|LOC100132247_uc010bxi.2_Missense_Mutation_p.L503F|LOC100132247_uc010bxk.2_Missense_Mutation_p.L339F|uc010vbx.1_5'Flank	NM_001135865	NP_001129337	A8MRT5	K220L_HUMAN	hypothetical protein LOC100132247	522	Pro-rich.					integral to membrane					0						AGCTCACTGCCCTTCCACCCTC	0.574													22	271					0	0	1	0	0
SLC5A11	115584	broad.mit.edu	37	16	24888627	24888627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:24888627G>A	uc002dmu.2	+	7	758	c.526G>A	c.(526-528)GAT>AAT	p.D176N	SLC5A11_uc002dms.2_Missense_Mutation_p.D112N|SLC5A11_uc010vcd.1_Missense_Mutation_p.D141N|SLC5A11_uc002dmt.2_Missense_Mutation_p.D112N|SLC5A11_uc010vce.1_Missense_Mutation_p.D106N|SLC5A11_uc010bxt.2_Missense_Mutation_p.D112N	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	176	Extracellular (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		TTTGCACCTGGATCTGTACCT	0.428													99	191					0	0	1	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25258413	25258413	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:25258413G>A	uc002dod.3	-	5	1511	c.1104C>T	c.(1102-1104)CCC>CCT	p.P368P	ZKSCAN2_uc010vcl.1_Silent_p.P164P|ZKSCAN2_uc002doe.2_Silent_p.P368P	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	368					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		GGCTATTTCGGGGACAGGCCT	0.458													49	54					0	0	1	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147110	26147110	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:26147110G>A	uc002dof.2	+	2	1304	c.912G>A	c.(910-912)AAG>AAA	p.K304K		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	304	Lumenal (Potential).|PAPS and substrate (By similarity).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		CACTGTCAAAGAAACCCGAGA	0.547													48	113					0	0	1	0	0
ATXN2L	11273	broad.mit.edu	37	16	28842289	28842289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:28842289C>T	uc002drc.2	+	10	1385	c.1217C>T	c.(1216-1218)TCC>TTC	p.S406F	uc010vct.1_Intron|ATXN2L_uc010byl.1_Missense_Mutation_p.S406F|ATXN2L_uc002drb.2_Missense_Mutation_p.S406F|ATXN2L_uc002dqy.2_Missense_Mutation_p.S406F|ATXN2L_uc002dra.2_Missense_Mutation_p.S406F|ATXN2L_uc002dqz.2_Missense_Mutation_p.S406F|ATXN2L_uc010vdb.1_Missense_Mutation_p.S406F|ATXN2L_uc002dre.2_Missense_Mutation_p.S406F|ATXN2L_uc002drf.2_Intron	NM_007245	NP_009176	Q8WWM7	ATX2L_HUMAN	ataxin 2 related protein isoform A	406						membrane				upper_aerodigestive_tract(1)|ovary(1)	2						ACAGGCCCTTCCCGCATGTCC	0.498													10	9					0	0	1	0	0
DNAJA2	10294	broad.mit.edu	37	16	47001495	47001495	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:47001495G>A	uc002eeo.2	-	5	649	c.507C>T	c.(505-507)ATC>ATT	p.I169I	DNAJA2_uc002eep.2_Silent_p.I86I	NM_005880	NP_005871	O60884	DNJA2_HUMAN	DnaJ subfamily A member 2	169	CR-type.				positive regulation of cell proliferation|protein folding|response to heat	membrane	ATP binding|heat shock protein binding|metal ion binding|unfolded protein binding			lung(1)	1		all_cancers(37;0.00125)|all_lung(18;0.00338)|all_epithelial(9;0.00358)|Lung NSC(13;0.0309)|Breast(268;0.116)				GTCTGATCATGATGCGCACAC	0.478													60	45					0	0	1	0	0
N4BP1	9683	broad.mit.edu	37	16	48595627	48595627	+	Silent	SNP	A	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:48595627A>T	uc002efp.2	-	2	1164	c.927T>A	c.(925-927)ATT>ATA	p.I309I		NM_153029	NP_694574	O75113	N4BP1_HUMAN	Nedd4 binding protein 1	309					negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination	nucleolus|PML body					0		all_cancers(37;0.179)|all_lung(18;0.11)				CATCGTGTAAAATCTCCCCCT	0.363													40	72					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51173123	51173123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:51173123C>T	uc010vgs.1	-	2	3041	c.3010G>A	c.(3010-3012)GAC>AAC	p.D1004N	SALL1_uc010vgr.1_Missense_Mutation_p.D907N|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1004	C2H2-type 6.				adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CCACAAATGTCACAAGCAGTG	0.403													35	31					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51175859	51175859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:51175859C>T	uc010vgs.1	-	2	305	c.274G>A	c.(274-276)GAT>AAT	p.D92N	SALL1_uc010vgr.1_5'UTR|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	92					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TCAGGATTATCAGGAGGGGGG	0.443													66	77					0	0	1	0	0
GPR97	222487	broad.mit.edu	37	16	57707357	57707357	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:57707357C>T	uc002emh.2	+	2	286	c.183C>T	c.(181-183)TCC>TCT	p.S61S	GPR97_uc010cdc.2_Silent_p.S61S|GPR97_uc010vhv.1_5'UTR|GPR97_uc010cdd.2_RNA	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor	61	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						GCAGCGACTCCTGCAATGTGG	0.557													27	62					0	0	1	0	0
CDH11	1009	broad.mit.edu	37	16	65032504	65032504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:65032504C>T	uc002eoi.2	-	4	918	c.484G>A	c.(484-486)GAG>AAG	p.E162K	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Missense_Mutation_p.E162K|CDH11_uc010vin.1_Missense_Mutation_p.E36K|CDH11_uc010vio.1_Missense_Mutation_p.E162K	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	162	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		TGATAGGTCTCGTGCAGGAAC	0.597			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			40	68					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70977779	70977779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:70977779G>A	uc002ezr.2	-	42	6730	c.6602C>T	c.(6601-6603)ACC>ATC	p.T2201I		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2202										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CATCAGCCCGGTCTCGCCTCC	0.532													18	15					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71065805	71065805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:71065805G>A	uc002ezr.2	-	19	2673	c.2545C>T	c.(2545-2547)CTT>TTT	p.L849F	HYDIN_uc010cfz.1_Missense_Mutation_p.L594F|HYDIN_uc002ezv.2_Missense_Mutation_p.L849F|HYDIN_uc010vmc.1_Missense_Mutation_p.L866F|HYDIN_uc010vmd.1_Missense_Mutation_p.L876F	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	849										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				ATCGTCCAAAGGGATTTTTTG	0.438													19	29					0	0	1	0	0
CHST4	10164	broad.mit.edu	37	16	71571443	71571443	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:71571443C>T	uc002fan.2	+	2	1044	c.863C>T	c.(862-864)TCC>TTC	p.S288F	CHST4_uc002fao.2_Missense_Mutation_p.S288F	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	288	Lumenal (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						GCCCAGACTTCCCGAATGTAT	0.567											OREG0023923	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	28					0	0	1	0	0
PHLPP2	23035	broad.mit.edu	37	16	71690521	71690521	+	Silent	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:71690521T>C	uc002fax.2	-	15	2349	c.2343A>G	c.(2341-2343)TCA>TCG	p.S781S	PHLPP2_uc002fav.2_RNA|PHLPP2_uc010cgf.2_Silent_p.S714S	NM_015020	NP_055835	Q6ZVD8	PHLP2_HUMAN	PH domain and leucine rich repeat protein	781	PP2C-like.					cytoplasm|membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)|central_nervous_system(1)	2						TCCAGAAGGTTGACGTAACTG	0.378													79	49					0	0	1	0	0
HPR	3250	broad.mit.edu	37	16	72110765	72110765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:72110765G>A	uc002fby.2	+	5	862	c.832G>A	c.(832-834)GAA>AAA	p.E278K	TXNL4B_uc010cgl.2_Intron	NM_020995	NP_066275	P00739	HPTR_HUMAN	haptoglobin-related protein precursor	278	Peptidase S1.				proteolysis	spherical high-density lipoprotein particle	hemoglobin binding|serine-type endopeptidase activity			central_nervous_system(1)	1		Ovarian(137;0.125)				CATACTGAACGAACACACCTT	0.552													45	51					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77397781	77397781	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:77397781A>T	uc002ffc.3	-	6	1393	c.974T>A	c.(973-975)GTT>GAT	p.V325D	ADAMTS18_uc010chc.1_5'UTR|ADAMTS18_uc002ffe.1_Missense_Mutation_p.V21D|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	325	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TAGGCCAGAAACCTGTTGGAA	0.373													7	28					0	0	1	0	0
VAT1L	57687	broad.mit.edu	37	16	77896788	77896788	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:77896788G>A	uc002ffg.1	+	4	819	c.722_splice	c.e4+1	p.R241_splice		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.								oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						AAGTTAAAAGGTAAGATGTTT	0.393													33	28					0	0	1	0	0
VAT1L	57687	broad.mit.edu	37	16	77910297	77910297	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:77910297G>A	uc002ffg.1	+	5	850	c.753G>A	c.(751-753)TTG>TTA	p.L251L		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	251							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						ACATCGTTTTGGATTGCCTCT	0.473													49	78					0	0	1	0	0
CLEC3A	10143	broad.mit.edu	37	16	78064447	78064447	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:78064447C>T	uc002ffh.3	+	3	384	c.303C>T	c.(301-303)ATC>ATT	p.I101I		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	101	C-type lectin.				skeletal system development	extracellular region	sugar binding				0						AAGGAGGAATCCTGGTTATCC	0.478													45	32					0	0	1	0	0
MAF	4094	broad.mit.edu	37	16	79632785	79632785	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:79632785G>A	uc002ffn.2	-	1	1838	c.1015C>T	c.(1015-1017)CGC>TGC	p.R339C	MAF_uc002ffm.2_Missense_Mutation_p.R339C	NM_001031804	NP_001026974	O75444	MAF_HUMAN	v-maf musculoaponeurotic fibrosarcoma oncogene	339	Represses ARE-mediated transcription.				transcription from RNA polymerase II promoter	chromatin|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)	1		all_epithelial(2;0.139)|Lung NSC(2;0.186)|Melanoma(2;0.211)		UCEC - Uterine corpus endometrioid carcinoma (2;0.0178)		TCCCTCTCGCGCACCAGCCTG	0.587			T	IGH@	MM								25	12					0	0	1	0	0
CDH13	1012	broad.mit.edu	37	16	83251022	83251022	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:83251022G>A	uc002fgx.2	+	5	676	c.556G>A	c.(556-558)GGA>AGA	p.G186R	CDH13_uc010vns.1_Missense_Mutation_p.G233R|CDH13_uc010vnt.1_5'UTR|CDH13_uc010vnu.1_Missense_Mutation_p.G147R	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	186	Cadherin 1.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		AGAGCCTAAAGGAATTTTCAG	0.473													44	37					0	0	1	0	0
CDH13	1012	broad.mit.edu	37	16	83816953	83816953	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:83816953G>A	uc002fgx.2	+	13	2130	c.2010G>A	c.(2008-2010)ACG>ACA	p.T670T	CDH13_uc010vns.1_Silent_p.T717T|CDH13_uc010vnt.1_Silent_p.T416T|CDH13_uc010vnu.1_Silent_p.T631T	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	670	Cadherin 5.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		CACCCATGACGAATATCACAG	0.522													24	53					0	0	1	0	0
JPH3	57338	broad.mit.edu	37	16	87678351	87678351	+	Silent	SNP	C	A	A	rs144950183	byFrequency	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:87678351C>A	uc002fkd.2	+	2	1124	c.870C>A	c.(868-870)GGC>GGA	p.G290G	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	290	Cytoplasmic (Potential).|MORN 7.				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		CCTACGTGGGCGAGTGGAAGA	0.672													3	81					0.115264	0.115616	1	1	0
CBFA2T3	863	broad.mit.edu	37	16	88958655	88958655	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr16:88958655C>T	uc002fmm.1	-	4	804	c.618G>A	c.(616-618)CTG>CTA	p.L206L	CBFA2T3_uc002fml.1_Silent_p.L120L|CBFA2T3_uc010cif.1_Silent_p.L145L|CBFA2T3_uc002fmn.1_Silent_p.L181L	NM_005187	NP_005178	O75081	MTG16_HUMAN	myeloid translocation gene on chromosome 16	206	TAFH.|Mediates localization to the nucleus (By similarity).|Mediates interaction with PDE7A (in isoform 2).				cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(3)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0275)		AACTCACCACCAGGCCCAGCA	0.612			T	RUNX1	AML								27	23					0	0	1	0	0
OR1A2	26189	broad.mit.edu	37	17	3100899	3100899	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:3100899G>A	uc002fvd.1	+	1	87	c.87G>A	c.(85-87)GTG>GTA	p.V29V		NM_012352	NP_036484	Q9Y585	OR1A2_HUMAN	olfactory receptor, family 1, subfamily A,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TCTTCTTTGTGATTTTTTTGT	0.403													51	88					0	0	1	0	0
TRPV1	7442	broad.mit.edu	37	17	3477212	3477212	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:3477212G>A	uc010vrr.1	-	12	2345	c.1818C>T	c.(1816-1818)TCC>TCT	p.S606S	TRPV1_uc010vro.1_Silent_p.S617S|TRPV1_uc010vrp.1_Silent_p.S546S|TRPV1_uc010vrq.1_Silent_p.S604S|TRPV1_uc010vrs.1_Silent_p.S606S|TRPV1_uc010vrt.1_Silent_p.S606S|TRPV1_uc010vru.1_Silent_p.S606S	NM_080706	NP_542437	Q8NER1	TRPV1_HUMAN	transient receptor potential cation channel,	606					cell surface receptor linked signaling pathway|chemosensory behavior|thermoception	cell junction|dendritic spine membrane|integral to plasma membrane|postsynaptic membrane	ATP binding|calcium channel activity|calmodulin binding			ovary(1)	1				Lung(1;0.055)|COAD - Colon adenocarcinoma(5;0.0896)|LUAD - Lung adenocarcinoma(1115;0.131)	Alpha-Linolenic Acid(DB00132)|Aspartame(DB00168)|Icosapent(DB00159)	CAGACGGCAGGGAGTCATTCT	0.622													7	13					0	0	1	0	0
ARRB2	409	broad.mit.edu	37	17	4622657	4622657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:4622657G>A	uc002fyj.2	+	11	1087	c.859G>A	c.(859-861)GGT>AGT	p.G287S	ARRB2_uc002fyk.2_Missense_Mutation_p.G272S|ARRB2_uc002fyl.2_Missense_Mutation_p.G287S|ARRB2_uc010vsg.1_Missense_Mutation_p.G308S|ARRB2_uc002fym.2_Missense_Mutation_p.G272S|ARRB2_uc002fyn.2_Missense_Mutation_p.G95S|ARRB2_uc010ckq.2_Missense_Mutation_p.G95S|ARRB2_uc002fyo.2_Missense_Mutation_p.G95S	NM_004313	NP_004304	P32121	ARRB2_HUMAN	arrestin, beta 2 isoform 1	287	Interaction with TRAF6.				cell chemotaxis|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|G-protein coupled receptor internalization|negative regulation of natural killer cell mediated cytotoxicity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|platelet activation|positive regulation of ERK1 and ERK2 cascade|proteasomal ubiquitin-dependent protein catabolic process|protein transport|protein ubiquitination|transcription from RNA polymerase II promoter|transforming growth factor beta receptor signaling pathway	coated pit|cytoplasmic membrane-bounded vesicle|cytosol|nucleus|plasma membrane	angiotensin receptor binding|ubiquitin protein ligase binding				0						GGAGAAGCGGGGTCTCGCCCT	0.627													31	34					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5462682	5462682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:5462682C>T	uc002gci.2	-	4	1889	c.1334G>A	c.(1333-1335)GGG>GAG	p.G445E	NLRP1_uc002gcg.1_Missense_Mutation_p.G445E|NLRP1_uc002gck.2_Missense_Mutation_p.G445E|NLRP1_uc002gcj.2_Missense_Mutation_p.G445E|NLRP1_uc002gcl.2_Missense_Mutation_p.G445E|NLRP1_uc002gch.3_Missense_Mutation_p.G445E|NLRP1_uc010clh.2_Missense_Mutation_p.G445E	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	445	NACHT.				defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				TATAGTTTTCCCCAGCAAACT	0.582													9	14					0	0	1	0	0
SLC13A5	284111	broad.mit.edu	37	17	6596446	6596446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:6596446C>T	uc002gdj.2	-	9	1280	c.1192G>A	c.(1192-1194)GAT>AAT	p.D398N	SLC13A5_uc010vtf.1_Missense_Mutation_p.D398N|SLC13A5_uc010clq.2_Missense_Mutation_p.D355N|SLC13A5_uc002gdk.2_Missense_Mutation_p.D381N	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	398						integral to membrane	citrate transmembrane transporter activity				0						ACCTTCCAATCCAGCAGGGGA	0.398													19	30					0	0	1	0	0
ALOX15B	247	broad.mit.edu	37	17	7948633	7948633	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:7948633C>T	uc002gju.2	+	7	1043	c.927C>T	c.(925-927)TTC>TTT	p.F309F	ALOX15B_uc002gjv.2_Silent_p.F309F|ALOX15B_uc002gjw.2_Silent_p.F309F|ALOX15B_uc010vun.1_Silent_p.F309F|ALOX15B_uc010cnp.2_Silent_p.F115F	NM_001141	NP_001132	O15296	LX15B_HUMAN	arachidonate 15-lipoxygenase, second type	309	Lipoxygenase.				induction of apoptosis|leukotriene biosynthetic process|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of growth|prostate gland development|regulation of epithelial cell differentiation	cytoplasm	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)	1						AGCCTCAGTTCTCTGCGGCCC	0.602													34	31					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10310296	10310296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:10310296C>T	uc002gmm.2	-	18	2061	c.1966G>A	c.(1966-1968)GAA>AAA	p.E656K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	656	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TTTAAATTTTCCTAGAAAACC	0.373									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				7	18					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10444004	10444004	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:10444004C>T	uc010coi.2	-	11	1043	c.915G>A	c.(913-915)CTG>CTA	p.L305L	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.L305L|MYH2_uc010coj.2_Silent_p.L305L	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	305	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TCGTGGTAATCAGAAGCATTT	0.373													16	25					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11572549	11572549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:11572549C>T	uc002gne.2	+	16	2968	c.2900C>T	c.(2899-2901)TCC>TTC	p.S967F	DNAH9_uc010coo.2_Missense_Mutation_p.S261F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	967	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCACGGCTTTCCCCACAAAAT	0.537													42	52					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11687808	11687808	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:11687808C>T	uc002gne.2	+	41	8081	c.8013C>T	c.(8011-8013)ATC>ATT	p.I2671I	DNAH9_uc010coo.2_Silent_p.I1965I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2671	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCACAGGAATCAAATTCCACT	0.512													79	81					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11784548	11784548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:11784548G>A	uc002gne.2	+	55	10692	c.10624G>A	c.(10624-10626)GAA>AAA	p.E3542K	DNAH9_uc010coo.2_Missense_Mutation_p.E2836K|DNAH9_uc002gnf.2_5'Flank	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3542	AAA 5 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TGGAGACAAAGAATGTGAATA	0.453													28	37					0	0	1	0	0
TEKT3	64518	broad.mit.edu	37	17	15215752	15215752	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:15215752G>T	uc002gon.2	-	7	1112	c.925C>A	c.(925-927)CTC>ATC	p.L309I		NM_031898	NP_114104	Q9BXF9	TEKT3_HUMAN	tektin 3	309					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		TGGGAGCGGAGAATATTGTCA	0.463													21	34					2.39556e-15	2.4402e-15	1	1	0
TRIM16	10626	broad.mit.edu	37	17	15532290	15532290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:15532290G>A	uc002gox.2	-	9	1891	c.1334C>T	c.(1333-1335)ACC>ATC	p.T445I	TRIM16_uc002gor.1_Intron|TRIM16_uc002gow.2_Missense_Mutation_p.T229I|TRIM16_uc002goy.2_Missense_Mutation_p.T315I	NM_006470	NP_006461	O95361	TRI16_HUMAN	tripartite motif-containing 16	445	B30.2/SPRY.				histone H3 acetylation|histone H4 acetylation|positive regulation of interleukin-1 beta secretion|positive regulation of keratinocyte differentiation|positive regulation of retinoic acid receptor signaling pathway|positive regulation of transcription, DNA-dependent|response to growth hormone stimulus|response to organophosphorus|response to retinoic acid	cytoplasm|plasma membrane|PML body	DNA binding|interleukin-1 binding|NACHT domain binding|zinc ion binding			ovary(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0839)|Epithelial(1;8.4e-29)|all cancers(1;3.06e-28)|Colorectal(1;1.57e-19)|OV - Ovarian serous cystadenocarcinoma(1;6.1e-17)|COAD - Colon adenocarcinoma(1;3.38e-12)|READ - Rectum adenocarcinoma(2;1.46e-05)|BRCA - Breast invasive adenocarcinoma(8;0.0559)		GCCTTTGCAGGTCAGGCCAAC	0.572													25	36					0	0	1	0	0
ZNF287	57336	broad.mit.edu	37	17	16456057	16456057	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:16456057G>A	uc002gqi.2	-	6	1852	c.1399C>T	c.(1399-1401)CTT>TTT	p.L467F		NM_020653	NP_065704	Q9HBT7	ZN287_HUMAN	zinc finger protein 287	460	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.083)		TGGATGGTAAGGTGTGCACGC	0.423													33	40					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18022396	18022396	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:18022396G>A	uc010vxh.1	+	2	620	c.282G>A	c.(280-282)AAG>AAA	p.K94K		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	94	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GCATGGGCAAGAAGAAGCGGG	0.667													13	12					0	0	1	0	0
ALDH3A2	224	broad.mit.edu	37	17	19559734	19559734	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:19559734A>G	uc002gwb.1	+	4	748	c.527A>G	c.(526-528)CAG>CGG	p.Q176R	ALDH3A2_uc002gwa.1_Missense_Mutation_p.Q176R|ALDH3A2_uc010cqr.1_5'UTR|ALDH3A2_uc002gwc.1_Missense_Mutation_p.Q176R|ALDH3A2_uc002gwd.1_5'UTR	NM_000382	NP_000373	P51648	AL3A2_HUMAN	aldehyde dehydrogenase 3A2 isoform 2	176	Cytoplasmic.				cellular aldehyde metabolic process|central nervous system development|epidermis development|lipid metabolic process|peripheral nervous system development	endoplasmic reticulum membrane|integral to membrane	3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase			ovary(2)	2	all_cancers(12;1.39e-05)|all_epithelial(12;0.00158)|Breast(13;0.245)				NADH(DB00157)	CTCCTGAAGCAGCGATTTGAC	0.448													13	31					0	0	1	0	0
SLC13A2	9058	broad.mit.edu	37	17	26818473	26818473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:26818473C>T	uc002hbh.2	+	5	660	c.593C>T	c.(592-594)CCT>CTT	p.P198L	SLC13A2_uc010wal.1_Missense_Mutation_p.P155L|SLC13A2_uc010wam.1_Missense_Mutation_p.P154L|SLC13A2_uc010wan.1_Missense_Mutation_p.P247L|SLC13A2_uc010wao.1_Missense_Mutation_p.P155L|SLC13A2_uc002hbi.2_Missense_Mutation_p.P127L	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	198						integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	CAGGCCCTCCCTGTCACGTCT	0.652													17	35					0	0	1	0	0
SLC13A2	9058	broad.mit.edu	37	17	26821463	26821463	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:26821463A>G	uc002hbh.2	+	9	1308	c.1241A>G	c.(1240-1242)AAC>AGC	p.N414S	SLC13A2_uc010wam.1_Missense_Mutation_p.N370S|SLC13A2_uc010wan.1_Missense_Mutation_p.N463S|SLC13A2_uc010wao.1_Missense_Mutation_p.N371S|SLC13A2_uc002hbi.2_Missense_Mutation_p.N343S	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	414						integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	AAGACGGTGAACCAGAAGATG	0.582											OREG0024276	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	36	49					0	0	1	0	0
GAS2L2	246176	broad.mit.edu	37	17	34073275	34073276	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:34073275_34073276CC>TT	uc002hjv.1	-	6	1268_1269	c.1240_1241GG>AA	c.(1240-1242)GGA>AAA	p.G414K		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	414					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GGGAATCCTTCCCCTGGGGAGT	0.599													83	122					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	34235668	34235668	+	RNA	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:34235668G>A	uc010ctx.1	-	1		c.1286C>T								Homo sapiens cDNA FLJ43944 fis, clone TESTI4014392.																		ATAACTTTCAGACTGCACCAG	0.443													16	21					0	0	1	0	0
PSMD3	5709	broad.mit.edu	37	17	38151308	38151308	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:38151308C>T	uc002htn.1	+	7	1247	c.1083C>T	c.(1081-1083)TTC>TTT	p.F361F	PSMD3_uc010wen.1_RNA|PSMD3_uc010weo.1_Silent_p.F262F	NM_002809	NP_002800	O43242	PSMD3_HUMAN	proteasome 26S non-ATPase subunit 3	361	PCI.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	enzyme regulator activity|protein binding			ovary(1)|pancreas(1)	2	Colorectal(19;0.000442)					TGCCCTATTTCCTTCTGACTC	0.587													62	79					0	0	1	0	0
KRT20	54474	broad.mit.edu	37	17	39041297	39041297	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:39041297G>A	uc002hvl.2	-	1	183	c.141C>T	c.(139-141)TCC>TCT	p.S47S		NM_019010	NP_061883	P35900	K1C20_HUMAN	keratin 20	47	Head.				apoptosis|intermediate filament organization	Golgi apparatus|intermediate filament	protein binding|structural constituent of cytoskeleton			large_intestine(1)|kidney(1)|skin(1)	3		Breast(137;0.000301)|Ovarian(249;0.15)				GTCTGGAGTTGGAGATGCGGA	0.597													27	47					0	0	1	0	0
KAT2A	2648	broad.mit.edu	37	17	40270412	40270412	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:40270412G>A	uc002hyx.2	-	7	1143	c.1083C>T	c.(1081-1083)TCC>TCT	p.S361S		NM_021078	NP_066564	Q92830	KAT2A_HUMAN	general control of amino acid synthesis 5-like	361					chromatin remodeling|histone deubiquitination|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	H3 histone acetyltransferase activity|histone deacetylase binding|protein binding|transcription coactivator activity			upper_aerodigestive_tract(1)|lung(1)	2						CCTCCAGCATGGACAGGAATC	0.597													39	43					0	0	1	0	0
DBF4B	80174	broad.mit.edu	37	17	42818719	42818719	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:42818719C>T	uc002ihf.2	+	10	942	c.729C>T	c.(727-729)TTC>TTT	p.F243F	DBF4B_uc010wjb.1_Intron|DBF4B_uc002ihe.2_Silent_p.F57F|DBF4B_uc010wjc.1_Silent_p.F227F	NM_145663	NP_663696	Q8NFT6	DBF4B_HUMAN	DBF4 homolog B isoform 1	243					cell cycle	nucleus	nucleic acid binding|zinc ion binding				0		Prostate(33;0.0322)				TTCGTCCTTTCCATCATCAGT	0.493													47	44					0	0	1	0	0
MYL4	4635	broad.mit.edu	37	17	45299745	45299745	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:45299745G>A	uc002ilg.2	+	6	616	c.488_splice	c.e6-1	p.G163_splice	MYL4_uc002ilh.2_Splice_Site_p.G163_splice	NM_001002841	NP_001002841	P12829	MYL4_HUMAN	atrial/embryonic alkali myosin light chain						cardiac muscle contraction|muscle filament sliding|muscle organ development|positive regulation of ATPase activity|regulation of the force of heart contraction	A band|cytosol|muscle myosin complex	actin filament binding|actin monomer binding|calcium ion binding|myosin II heavy chain binding|structural constituent of muscle			ovary(2)	2						ACCCACCGCAGGAGAGAAGAT	0.522													21	35					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48277309	48277309	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:48277309C>T	uc002iqm.2	-	2	230	c.104_splice	c.e2-1	p.I35_splice		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein						axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	ATTGGTGGGACTGGGACAGGC	0.587			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						66	69					0	0	1	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48608750	48608750	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:48608750C>T	uc010wmr.1	+	19	3078	c.2916C>T	c.(2914-2916)CCC>CCT	p.P972P	MYCBPAP_uc002iqz.2_RNA|EPN3_uc002ira.3_5'Flank|EPN3_uc010wms.1_5'Flank|EPN3_uc010wmt.1_5'Flank	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	935					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			AGCTCAGCCCCATAAAGAATG	0.522													17	21					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48674097	48674097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:48674097C>T	uc002irk.1	+	16	3443	c.3071C>T	c.(3070-3072)TCC>TTC	p.S1024F	CACNA1G_uc002iri.1_Missense_Mutation_p.S1024F|CACNA1G_uc002irj.1_Missense_Mutation_p.S1001F|CACNA1G_uc002irl.1_Missense_Mutation_p.S1001F|CACNA1G_uc002irm.1_Missense_Mutation_p.S1001F|CACNA1G_uc002irn.1_Missense_Mutation_p.S1001F|CACNA1G_uc002iro.1_Missense_Mutation_p.S1001F|CACNA1G_uc002irp.1_Missense_Mutation_p.S1024F|CACNA1G_uc002irq.1_Missense_Mutation_p.S1001F|CACNA1G_uc002irr.1_Missense_Mutation_p.S1024F|CACNA1G_uc002irs.1_Missense_Mutation_p.S1024F|CACNA1G_uc002irt.1_Missense_Mutation_p.S1024F|CACNA1G_uc002irv.1_Missense_Mutation_p.S1024F|CACNA1G_uc002irw.1_Missense_Mutation_p.S1001F|CACNA1G_uc002iru.1_Missense_Mutation_p.S1001F|CACNA1G_uc002irx.1_Missense_Mutation_p.S937F|CACNA1G_uc002iry.1_Missense_Mutation_p.S937F|CACNA1G_uc002irz.1_Missense_Mutation_p.S937F|CACNA1G_uc002isa.1_Missense_Mutation_p.S937F|CACNA1G_uc002isb.1_Missense_Mutation_p.S937F|CACNA1G_uc002isc.1_Missense_Mutation_p.S937F|CACNA1G_uc002isd.1_Missense_Mutation_p.S937F|CACNA1G_uc002ise.1_Missense_Mutation_p.S937F|CACNA1G_uc002isf.1_Missense_Mutation_p.S937F|CACNA1G_uc002isg.1_Missense_Mutation_p.S937F|CACNA1G_uc002ish.1_Missense_Mutation_p.S937F|CACNA1G_uc002isi.1_Missense_Mutation_p.S914F|CACNA1G_uc002isj.2_5'Flank	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1024	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GCAGTGGTGTCCCTGGGAGAG	0.662													18	10					0	0	1	0	0
MBTD1	54799	broad.mit.edu	37	17	49272580	49272580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:49272580G>A	uc002itr.3	-	13	1711	c.1367C>T	c.(1366-1368)CCC>CTC	p.P456L	MBTD1_uc002itp.3_Missense_Mutation_p.P292L|MBTD1_uc002itq.3_Intron	NM_017643	NP_060113	Q05BQ5	MBTD1_HUMAN	mbt domain containing 1	456	MBT 3.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(22;1.54e-08)			AGTACCTCTGGGTGGAGTAAG	0.393													10	8					0	0	1	0	0
KCNH6	81033	broad.mit.edu	37	17	61621682	61621682	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:61621682G>A	uc002jay.2	+	12	2494	c.2414G>A	c.(2413-2415)AGG>AAG	p.R805K	KCNH6_uc010wpl.1_Missense_Mutation_p.R646K|KCNH6_uc010wpm.1_Missense_Mutation_p.R769K|KCNH6_uc002jaz.1_Missense_Mutation_p.R716K	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	805	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	ATGCCCCCAAGGCACAGCCCC	0.607													12	27					0	0	1	0	0
HELZ	9931	broad.mit.edu	37	17	65104786	65104786	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:65104786G>A	uc010wqk.1	-	30	4736	c.4549C>T	c.(4549-4551)CAG>TAG	p.Q1517*	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Nonsense_Mutation_p.Q1516*|HELZ_uc010der.2_Nonsense_Mutation_p.Q60*	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					CTCCACTGCTGGAACCGTGCC	0.507													36	49					0	0	1	0	0
HELZ	9931	broad.mit.edu	37	17	65105286	65105286	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:65105286G>A	uc010wqk.1	-	29	4625	c.4438C>T	c.(4438-4440)CTG>TTG	p.L1480L	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Silent_p.L1479L|HELZ_uc010der.2_Silent_p.L23L	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					AAGCTATTCAGATGTGAAGGA	0.488													30	40					0	0	1	0	0
SSTR2	6752	broad.mit.edu	37	17	71166015	71166015	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:71166015A>G	uc002jje.2	+	2	917	c.557A>G	c.(556-558)AAC>AGC	p.N186S		NM_001050	NP_001041	P30874	SSR2_HUMAN	somatostatin receptor 2	186	Extracellular (Potential).				digestion|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	PDZ domain binding|somatostatin receptor activity				0			LUSC - Lung squamous cell carcinoma(166;0.197)			CTCCGGAGCAACCAGTGGGGG	0.557													30	36					0	0	1	0	0
SLC16A5	9121	broad.mit.edu	37	17	73096889	73096889	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:73096889C>T	uc002jmr.2	+	5	1503	c.1131C>T	c.(1129-1131)TTC>TTT	p.F377F	SLC16A5_uc002jms.1_Silent_p.F377F|SLC16A5_uc002jmt.2_Silent_p.F377F|SLC16A5_uc002jmu.2_Silent_p.F377F|SLC16A5_uc010wrt.1_Silent_p.F417F	NM_004695	NP_004686	O15375	MOT6_HUMAN	solute carrier family 16, member 5	377	Helical; (Potential).				organic anion transport	integral to plasma membrane|membrane fraction	secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	all_lung(278;0.226)		LUSC - Lung squamous cell carcinoma(166;0.162)|Lung(188;0.235)		Pyruvic acid(DB00119)	GCCTTGCTTTCCTCATCTCCC	0.597													5	9					0	0	1	0	0
HN1	51155	broad.mit.edu	37	17	73144668	73144668	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:73144668A>G	uc002jna.1	-	2	438	c.155T>C	c.(154-156)TTT>TCT	p.F52S	HN1_uc002jmz.1_Missense_Mutation_p.F6S|HN1_uc002jnb.1_Missense_Mutation_p.F52S|HN1_uc010dgc.1_RNA|HN1_uc002jnc.2_RNA|HN1_uc002jnd.2_Missense_Mutation_p.F52S	NM_016185	NP_057269	Q9UK76	HN1_HUMAN	hematological and neurological expressed 1	52						nucleus					0	all_lung(278;0.14)|Lung NSC(278;0.168)					AGGTGTCCCAAAGATATTAGA	0.458													11	26					0	0	1	0	0
RECQL5	9400	broad.mit.edu	37	17	73625544	73625544	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:73625544C>T	uc010dgl.2	-	16	2115	c.1959G>A	c.(1957-1959)AAG>AAA	p.K653K	RECQL5_uc010dgk.2_Silent_p.K626K|RECQL5_uc002jot.3_5'Flank	NM_004259	NP_004250	O94762	RECQ5_HUMAN	RecQ protein-like 5 isoform 1	653					DNA recombination|DNA repair	cytoplasm|nuclear membrane|nucleolus|nucleoplasm	ATP binding|ATP-dependent helicase activity|DNA helicase activity|nucleic acid binding			kidney(3)	3	all_cancers(13;2.73e-08)|Breast(9;6.04e-09)|all_epithelial(9;6.79e-09)		all cancers(21;1.15e-06)|Epithelial(20;2.19e-06)|Lung(188;0.101)|LUSC - Lung squamous cell carcinoma(166;0.112)			CTCCCACCCGCTTGGGTTTGA	0.622								Other_identified_genes_with_known_or_suspected_DNA_repair_function					22	26					0	0	1	0	0
PRCD	768206	broad.mit.edu	37	17	74538642	74538642	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:74538642G>A	uc002jrx.2	+	3	254	c.151G>A	c.(151-153)GAA>AAA	p.E51K	CYGB_uc002jrv.1_Intron|PRCD_uc002jrw.1_5'UTR|PRCD_uc002jry.1_5'UTR|PRCD_uc002jrz.1_5'Flank	NM_001077620	NP_001071088	Q00LT1	PRCD_HUMAN	progressive rod-cone degeneration	51					response to stimulus|visual perception	cytoplasm|integral to membrane					0						TAGGGAGAAAGAACCTCTGAA	0.587													9	24					0	0	1	0	0
MGAT5B	146664	broad.mit.edu	37	17	74934093	74934093	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:74934093C>T	uc002jti.2	+	11	1582	c.1479C>T	c.(1477-1479)ATC>ATT	p.I493I	MGAT5B_uc002jth.2_Silent_p.I482I	NM_198955	NP_945193	Q3V5L5	MGT5B_HUMAN	N-acetylglucosaminyltranferase VB isoform 2	484	Lumenal (Potential).					Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(2)|skin(1)	3						TCCTGGGCATCCTGAACAAAT	0.542													20	39					0	0	1	0	0
C1QTNF1	114897	broad.mit.edu	37	17	77043690	77043690	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr17:77043690G>A	uc002jwp.2	+	4	706	c.366G>A	c.(364-366)AGG>AGA	p.R122R	C1QTNF1_uc002jwq.2_Silent_p.R40R|C1QTNF1_uc002jwr.3_Silent_p.R132R|C1QTNF1_uc002jws.2_Silent_p.R122R|C1QTNF1_uc002jwt.2_Silent_p.R220R	NM_030968	NP_112230	Q9BXJ1	C1QT1_HUMAN	C1q and tumor necrosis factor related protein 1	122	Collagen-like.					collagen				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(99;0.0294)|OV - Ovarian serous cystadenocarcinoma(97;0.201)			CAGGGGCCAGGGGCCACACTG	0.627													47	72					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14542773	14542773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:14542773C>T	uc010dln.2	-	1	827	c.373G>A	c.(373-375)GAC>AAC	p.D125N	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	125										skin(3)	3						AAGGCGCTGTCGTCGTAGTCT	0.607													34	69					0	0	1	0	0
NPC1	4864	broad.mit.edu	37	18	21121119	21121119	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:21121119G>A	uc002kum.3	-	16	2701	c.2427C>T	c.(2425-2427)AGC>AGT	p.S809S	NPC1_uc010xaz.1_Silent_p.S542S|NPC1_uc010xba.1_Silent_p.S654S	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	809					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					AGGCCTGGACGCTTGTTCCAT	0.473													24	32					0	0	1	0	0
HRH4	59340	broad.mit.edu	37	18	22056862	22056862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:22056862C>T	uc002kvi.2	+	3	609	c.509C>T	c.(508-510)TCG>TTG	p.S170L	HRH4_uc010xbd.1_3'UTR|HRH4_uc010dlx.2_Missense_Mutation_p.S82L	NM_021624	NP_067637	Q9H3N8	HRH4_HUMAN	histamine H4 receptor isoform 1	170	Extracellular (Potential).					integral to membrane|plasma membrane	histamine receptor activity			ovary(2)	2	all_cancers(21;0.000545)|all_epithelial(16;6.56e-06)|Lung NSC(20;0.0027)|all_lung(20;0.0085)|Colorectal(14;0.0361)|Ovarian(20;0.0991)				Clozapine(DB00363)	GGATTTTTTTCGGAATGGTAC	0.433													39	60					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29049078	29049078	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:29049078G>A	uc002kws.2	+	12	1772	c.1663G>A	c.(1663-1665)GAA>AAA	p.E555K		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	555	Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CAGAGCCCAGGAACAGATACC	0.418													61	76					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31323969	31323969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:31323969C>T	uc010dmg.1	+	12	4212	c.4157C>T	c.(4156-4158)TCC>TTC	p.S1386F	ASXL3_uc002kxq.2_Missense_Mutation_p.S1093F	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1386					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GCCACTGTATCCATGGGTACC	0.507											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	61	58					0	0	1	0	0
FHOD3	80206	broad.mit.edu	37	18	34324132	34324132	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:34324132C>T	uc002kzt.1	+	19	3538	c.3441C>T	c.(3439-3441)ATC>ATT	p.I1147I	FHOD3_uc002kzs.1_Silent_p.I1164I|FHOD3_uc010dmz.1_Silent_p.I879I|FHOD3_uc010dnb.1_Silent_p.I143I	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	1147	FH2.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				ACTCGGAGATCGGGGCCATCA	0.562													24	33					0	0	1	0	0
SLC14A2	8170	broad.mit.edu	37	18	43262464	43262464	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:43262464C>T	uc010dnj.2	+	21	3064	c.2743C>T	c.(2743-2745)CAG>TAG	p.Q915*	SLC14A2_uc002lbe.2_Nonsense_Mutation_p.Q915*	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	915						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						AACAAAGTATCAGGCCTACGA	0.498													38	50					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47463663	47463663	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:47463663G>A	uc002leb.2	-	15	2145	c.1857C>T	c.(1855-1857)CCC>CCT	p.P619P	MYO5B_uc002lec.1_Silent_p.P618P	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	619	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity	p.P619T(1)		ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CTTTCATGGGGGGTCTGGCAG	0.572													36	73					0	0	1	0	0
C18orf26	284254	broad.mit.edu	37	18	52265188	52265188	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:52265188C>T	uc002lfq.1	+	3	491	c.445C>T	c.(445-447)CAG>TAG	p.Q149*	C18orf26_uc002lfp.1_Nonsense_Mutation_p.Q97*	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	149						integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		CATTGTTATCCAGCTATCCAC	0.453													13	21					0	0	1	0	0
ZNF532	55205	broad.mit.edu	37	18	56587044	56587044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:56587044G>A	uc002lho.2	+	4	2072	c.1525G>A	c.(1525-1527)GCA>ACA	p.A509T	ZNF532_uc002lhp.2_Missense_Mutation_p.A507T|ZNF532_uc010xeg.1_Missense_Mutation_p.A507T|ZNF532_uc002lhr.2_Missense_Mutation_p.A507T|ZNF532_uc002lhs.2_Missense_Mutation_p.A507T	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	509					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						CGTGGTGCCGGCATCCAGCCT	0.582													3	30					0	0	1	0	0
SERPINB12	89777	broad.mit.edu	37	18	61225608	61225608	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:61225608C>T	uc010xen.1	+	2	192	c.192C>T	c.(190-192)TCC>TCT	p.S64S	SERPINB12_uc010xeo.1_Silent_p.S64S	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	64					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						ACGAATTTTCCCAGAATGAAA	0.428													29	46					0	0	1	0	0
SERPINB4	6318	broad.mit.edu	37	18	61306534	61306534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:61306534G>A	uc002ljf.2	-	7	739	c.653C>T	c.(652-654)TCC>TTC	p.S218F	SERPINB4_uc002lje.2_Intron|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	218					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						AAAATTAAAGGAATTGTATTG	0.368													13	13					0	0	1	0	0
SERPINB10	5273	broad.mit.edu	37	18	61585198	61585198	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:61585198G>A	uc010xev.1	+	4	325	c.235_splice	c.e4-1	p.E79_splice	SERPINB10_uc010xew.1_Splice_Site_p.E79_splice	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade							cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				CTCTTTTAAAGGAATTCAACT	0.338													15	16					0	0	1	0	0
CDH7	1005	broad.mit.edu	37	18	63547742	63547742	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:63547742G>A	uc002ljz.2	+	12	2295	c.1970G>A	c.(1969-1971)GGC>GAC	p.G657D	CDH7_uc002lkb.2_Missense_Mutation_p.G657D	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	657	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				GATGACGAGGGCGGGGGAGAG	0.483													28	35					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76754586	76754586	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:76754586G>A	uc002lmt.2	+	2	2595	c.2595G>A	c.(2593-2595)GTG>GTA	p.V865V	SALL3_uc010dra.2_Silent_p.V472V	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	865					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		TCAAGTCCGTGGAGAACGGGT	0.677													28	28					0	0	1	0	0
NFATC1	4772	broad.mit.edu	37	18	77171485	77171485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr18:77171485C>T	uc010xfg.1	+	2	1663	c.1210C>T	c.(1210-1212)CCT>TCT	p.P404S	NFATC1_uc002lnc.1_Missense_Mutation_p.P404S|NFATC1_uc010xff.1_Missense_Mutation_p.P404S|NFATC1_uc002lnd.2_Missense_Mutation_p.P404S|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Missense_Mutation_p.P404S|NFATC1_uc010xfi.1_Missense_Mutation_p.P391S|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Missense_Mutation_p.P391S|NFATC1_uc002lng.2_Missense_Mutation_p.P391S|NFATC1_uc010xfk.1_Missense_Mutation_p.P391S	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	404					intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		GCCCCTGTCCCCTACGTCCTA	0.418													6	4					0	0	1	0	0
MEX3D	399664	broad.mit.edu	37	19	1556354	1556354	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:1556354G>A	uc010dsn.2	-	2	1164	c.1164C>T	c.(1162-1164)GCC>GCT	p.A388A		NM_203304	NP_976049	Q86XN8	MEX3D_HUMAN	ring finger and KH domain containing 1	388					mRNA destabilization|posttranscriptional regulation of gene expression by mRNA localization|regulation of anti-apoptosis	nucleus|perinuclear region of cytoplasm	AU-rich element binding|zinc ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCGGAGGCCGGCCGTGGCCG	0.801													12	3					0	0	1	0	0
TJP3	27134	broad.mit.edu	37	19	3746787	3746787	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:3746787G>A	uc010xhv.1	+	17	2334	c.2334G>A	c.(2332-2334)CTG>CTA	p.L778L	TJP3_uc010xhs.1_Silent_p.L745L|TJP3_uc010xht.1_Silent_p.L709L|TJP3_uc010xhu.1_Silent_p.L754L|TJP3_uc010xhw.1_Silent_p.L764L	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	759	Guanylate kinase-like.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		CCATCCCTCTGAATGGCACGA	0.642													9	5					0	0	1	0	0
PLIN4	729359	broad.mit.edu	37	19	4517588	4517588	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:4517588C>T	uc002mar.1	-	1	129	c.129G>A	c.(127-129)GAG>GAA	p.E43E		NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	43						lipid particle|plasma membrane					0						GTTGGGCAGCCTCGGCAGCAG	0.706													14	13					0	0	1	0	0
HSD11B1L	374875	broad.mit.edu	37	19	5685010	5685010	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:5685010G>A	uc002mck.2	+	3	334	c.84G>A	c.(82-84)CAG>CAA	p.Q28Q	HSD11B1L_uc002mcj.2_RNA|HSD11B1L_uc002mcu.2_5'UTR|HSD11B1L_uc002mcl.2_Intron|HSD11B1L_uc002mcm.2_Intron|HSD11B1L_uc002mcq.2_5'UTR|HSD11B1L_uc002mcr.2_Intron|HSD11B1L_uc002mcs.2_Silent_p.Q82Q|HSD11B1L_uc010dug.2_Silent_p.Q75Q|HSD11B1L_uc002mct.2_5'UTR|HSD11B1L_uc002mco.2_5'UTR|HSD11B1L_uc002mcn.2_Silent_p.Q28Q|HSD11B1L_uc002mcp.2_5'UTR	NM_198533	NP_940935	Q7Z5J1	DHI1L_HUMAN	short-chain dehydrogenase/reductase 10 isoform	28						extracellular region	binding|oxidoreductase activity				0						CCAGCCTCCAGGGAGCGCGAG	0.672													3	10					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8645836	8645836	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:8645836G>A	uc002mkj.1	-	26	3527	c.3253C>T	c.(3253-3255)CAG>TAG	p.Q1085*	ADAMTS10_uc002mki.1_Nonsense_Mutation_p.Q572*	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1085	PLAC.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						CTGCAGAACTGAAATTTGAGC	0.627											OREG0025220	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	22					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9047238	9047238	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:9047238T>C	uc002mkp.2	-	5	34597	c.34393A>G	c.(34393-34395)ATC>GTC	p.I11465V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11467	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCAGAACTGATGACCAGTGAG	0.493													90	59					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9058153	9058153	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:9058153G>A	uc002mkp.2	-	3	29497	c.29293C>T	c.(29293-29295)CTG>TTG	p.L9765L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9767	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCTTCACCAGGCCTGGGAGG	0.488													28	24					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9060828	9060828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:9060828G>A	uc002mkp.2	-	3	26822	c.26618C>T	c.(26617-26619)TCT>TTT	p.S8873F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8875	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTACTCTCAGATGGTGTGGA	0.507													39	69					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9067275	9067275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:9067275G>A	uc002mkp.2	-	3	20375	c.20171C>T	c.(20170-20172)TCC>TTC	p.S6724F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6726	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AATGCCAAGGGAGATAGGCAG	0.483													93	210					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9075800	9075800	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:9075800G>A	uc002mkp.2	-	3	11850	c.11646C>T	c.(11644-11646)ATC>ATT	p.I3882I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3883	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCATCTCAGTGATCCAAGGTG	0.448													22	26					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10084991	10084991	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:10084991G>A	uc002mmq.1	-	46	3522	c.3436C>T	c.(3436-3438)CCT>TCT	p.P1146S		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1146	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			AGTCCAGGAGGGCCAATCACC	0.627													11	56					0	0	1	0	0
TYK2	7297	broad.mit.edu	37	19	10473044	10473044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:10473044G>A	uc002moc.3	-	11	1943	c.1565C>T	c.(1564-1566)TCC>TTC	p.S522F	TYK2_uc010dxe.2_Missense_Mutation_p.S337F|TYK2_uc002mod.2_Missense_Mutation_p.S522F	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	522	SH2; atypical.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			GCTGGGGAAGGACCGGCCCCA	0.662													11	23					0	0	1	0	0
PDE4A	5141	broad.mit.edu	37	19	10570295	10570295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:10570295C>T	uc002moj.2	+	10	1333	c.1225C>T	c.(1225-1227)CGC>TGC	p.R409C	PDE4A_uc002mok.2_Missense_Mutation_p.R383C|PDE4A_uc002mol.2_Missense_Mutation_p.R348C|PDE4A_uc002mom.2_Missense_Mutation_p.R170C|PDE4A_uc002mon.2_Intron|PDE4A_uc002moo.2_Missense_Mutation_p.R75C	NM_001111307	NP_001104777	P27815	PDE4A_HUMAN	phosphodiesterase 4A isoform 1	409	Catalytic.				signal transduction	cytosol|membrane fraction|perinuclear region of cytoplasm|ruffle membrane|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;5.8e-10)|Epithelial(33;7.58e-07)|all cancers(31;3.91e-06)		Cilostazol(DB01166)|Dipyridamole(DB00975)|Dyphylline(DB00651)|Enprofylline(DB00824)|Iloprost(DB01088)|Milrinone(DB00235)|Pentoxifylline(DB00806)|Phentolamine(DB00692)|Tadalafil(DB00820)|Theophylline(DB00277)	GAAGAAATTCCGCATCCCTGT	0.637													21	15					0	0	1	0	0
ZNF653	115950	broad.mit.edu	37	19	11598418	11598418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:11598418G>A	uc002mrz.1	-	4	913	c.860C>T	c.(859-861)GCG>GTG	p.A287V		NM_138783	NP_620138	Q96CK0	ZN653_HUMAN	zinc finger protein 653	287					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCTGGGGCCCGCACCCACTTG	0.687													4	90					0	0	1	0	0
ZNF653	115950	broad.mit.edu	37	19	11606796	11606796	+	Silent	SNP	G	A	A	rs140986196	by1000genomes	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:11606796G>A	uc002mrz.1	-	3	581	c.528C>T	c.(526-528)CCC>CCT	p.P176P		NM_138783	NP_620138	Q96CK0	ZN653_HUMAN	zinc finger protein 653	176					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGTCGCTGAGGGGCTTCAGGG	0.627													23	18					0	0	1	0	0
ZNF440	126070	broad.mit.edu	37	19	11942794	11942794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:11942794C>T	uc002msp.1	+	4	959	c.803C>T	c.(802-804)CCC>CTC	p.P268L		NM_152357	NP_689570	Q8IYI8	ZN440_HUMAN	zinc finger protein 440	268	C2H2-type 5; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTTCATAGTCCCAGATCCTAT	0.393													26	15					0	0	1	0	0
ZNF44	51710	broad.mit.edu	37	19	12383432	12383432	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:12383432G>A	uc010xmj.1	-	5	1987	c.1782C>T	c.(1780-1782)TTC>TTT	p.F594F	ZNF44_uc002mtl.2_Intron|ZNF44_uc010dyr.1_Intron|ZNF44_uc010xmi.1_RNA|ZNF44_uc002mtn.3_RNA|ZNF44_uc010dys.2_Silent_p.F546F	NM_001164276	NP_001157748	P15621	ZNF44_HUMAN	zinc finger protein 44 isoform 1	594	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1		Renal(1328;0.157)		GBM - Glioblastoma multiforme(1328;0.0164)|Lung(535;0.179)		GTCTTAGAAGGAAAGAGGGCC	0.418													12	10					0	0	1	0	0
ZNF709	163051	broad.mit.edu	37	19	12575478	12575478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:12575478G>A	uc002mtv.3	-	4	1419	c.1258C>T	c.(1258-1260)CAT>TAT	p.H420Y	ZNF709_uc002mtw.3_Missense_Mutation_p.H388Y|ZNF709_uc002mtx.3_Missense_Mutation_p.H420Y	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	420	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTACATTCATGGGGTTTCTCT	0.418													23	69					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13428095	13428095	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:13428095C>T	uc010dze.2	-	11	1625	c.1389G>A	c.(1387-1389)CTG>CTA	p.L463L	CACNA1A_uc010dzc.2_5'UTR|CACNA1A_uc002mwy.3_Silent_p.L462L|CACNA1A_uc010xne.1_5'UTR	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	463	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TCGAGTTCTCCAGCTTGGCAC	0.493													10	13					0	0	1	0	0
CC2D1A	54862	broad.mit.edu	37	19	14030636	14030636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:14030636C>T	uc002mxo.2	+	12	1527	c.1228C>T	c.(1228-1230)CCC>TCC	p.P410S	CC2D1A_uc002mxn.2_Missense_Mutation_p.P309S|CC2D1A_uc002mxp.2_Missense_Mutation_p.P410S|CC2D1A_uc010dzh.2_Intron|CC2D1A_uc002mxq.1_Missense_Mutation_p.P55S	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	410					positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			CCCAGGCTTCCCCCCAATCCA	0.587													26	25					0	0	1	0	0
DDX39	10212	broad.mit.edu	37	19	14521959	14521959	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:14521959G>A	uc010xnp.1	-	5	500	c.455C>T	c.(454-456)TCC>TTC	p.S152F	DDX39_uc002myo.2_Missense_Mutation_p.S152F|DDX39_uc010dzl.2_RNA|DDX39_uc010dzm.1_Missense_Mutation_p.S152F	NM_005804	NP_005795	O00148	DX39A_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	152	Helicase ATP-binding.				mRNA export from nucleus|nuclear mRNA splicing, via spliceosome	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding				0						CTTCTTGATGGAGAGACCACC	0.597													58	52					0	0	1	0	0
EMR3	84658	broad.mit.edu	37	19	14730271	14730271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:14730271G>A	uc002mzi.3	-	16	2081	c.1933C>T	c.(1933-1935)CCA>TCA	p.P645S	EMR3_uc010dzp.2_Missense_Mutation_p.P593S|EMR3_uc010xnv.1_Missense_Mutation_p.P519S	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	645	Cytoplasmic (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						ACTTGTCCTGGAAAAACATCC	0.338													46	34					0	0	1	0	0
CASP14	23581	broad.mit.edu	37	19	15164333	15164333	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:15164333T>G	uc010dzv.1	+	3	376	c.68T>G	c.(67-69)CTG>CGG	p.L23R	CASP14_uc002naf.2_Missense_Mutation_p.L23R	NM_012114	NP_036246	P31944	CASPE_HUMAN	caspase 14 precursor	23					apoptosis|cell differentiation|epidermis development|proteolysis	cytoplasm|nucleus	cysteine-type endopeptidase activity			skin(2)|ovary(1)|lung(1)	4						GCCCTAATACTGTGTGTCACC	0.468													43	69					0	0	1	0	0
AKAP8	10270	broad.mit.edu	37	19	15469800	15469800	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:15469800T>C	uc002nav.2	-	13	1662	c.1601A>G	c.(1600-1602)AAG>AGG	p.K534R	AKAP8_uc010dzy.2_Missense_Mutation_p.K83R	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	534					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						TTCCAGCATCTTCACTATATG	0.443													32	62					0	0	1	0	0
AKAP8	10270	broad.mit.edu	37	19	15469802	15469802	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:15469802C>T	uc002nav.2	-	13	1660	c.1599G>A	c.(1597-1599)GTG>GTA	p.V533V	AKAP8_uc010dzy.2_Silent_p.V82V	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	533					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						CCAGCATCTTCACTATATGTC	0.438													32	61					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	15871654	15871654	+	RNA	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:15871654C>T	uc002nbo.2	-	9		c.1353G>A								Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		GAATAAAAGCCAGAGGTGACC	0.572													25	21					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16024554	16024554	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:16024554C>T	uc002nbu.2	-	13	1599	c.1563G>A	c.(1561-1563)GCG>GCA	p.A521A	CYP4F11_uc010eab.1_3'UTR|CYP4F11_uc002nbt.2_Silent_p.A521A	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	521					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						ACTGTGAGTTCGCACCCAGGG	0.592													11	6					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16860876	16860876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:16860876G>A	uc002neu.3	+	6	1845	c.1423G>A	c.(1423-1425)GTT>ATT	p.V475I	NWD1_uc002net.3_Missense_Mutation_p.V340I|NWD1_uc002nev.3_Missense_Mutation_p.V269I			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	475	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GGCACTGGGGGTTTTGGACAC	0.642													52	52					0	0	1	0	0
SIN3B	23309	broad.mit.edu	37	19	16942440	16942440	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:16942440G>T	uc002ney.1	+	3	377	c.363G>T	c.(361-363)CAG>CAT	p.Q121H	SIN3B_uc002new.2_Missense_Mutation_p.Q121H|SIN3B_uc002nex.2_Missense_Mutation_p.Q53H|SIN3B_uc002nez.1_Missense_Mutation_p.Q121H	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	121					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						TAAACATACAGTCGCCTCTGA	0.502													27	58					2.2171e-23	2.26545e-23	1	1	0
CPAMD8	27151	broad.mit.edu	37	19	17108112	17108112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:17108112C>T	uc002nfb.2	-	11	1077	c.1045G>A	c.(1045-1047)GAC>AAC	p.D349N		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	302						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GGGATCATGTCCCTCACGCAG	0.617													5	7					0	0	1	0	0
JAK3	3718	broad.mit.edu	37	19	17953950	17953950	+	Missense_Mutation	SNP	G	A	A	rs55778349	byFrequency	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:17953950G>A	uc002nhn.3	-	5	552	c.452C>T	c.(451-453)CCC>CTC	p.P151L	JAK3_uc010ebh.2_RNA|JAK3_uc002nho.2_Missense_Mutation_p.P151L|JAK3_uc010xpx.1_Missense_Mutation_p.P151L|JAK3_uc010xpy.1_3'UTR	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	151	FERM.|Interaction with cytokine/interferon/growth hormone receptors (By similarity).				B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding	p.P151R(1)		haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						GAGGCCCACGGGGAGGCGCCC	0.677		2	Mis		acute megakaryocytic leukemia|								10	13					0	0	1	0	0
SLC5A5	6528	broad.mit.edu	37	19	17999160	17999160	+	Missense_Mutation	SNP	G	A	A	rs145168559		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:17999160G>A	uc002nhr.3	+	13	1894	c.1547G>A	c.(1546-1548)CGA>CAA	p.R516Q		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	516	Extracellular (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GACGCCAGCCGACCCGCCTTA	0.488													37	73					0	0	1	0	0
PDE4C	5143	broad.mit.edu	37	19	18324247	18324247	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:18324247G>A	uc010xqc.1	-	13	2019	c.1539C>T	c.(1537-1539)ACC>ACT	p.T513T	PDE4C_uc002nik.3_Silent_p.T513T|PDE4C_uc002nil.3_Silent_p.T513T|PDE4C_uc002nif.3_Silent_p.T282T|PDE4C_uc002nig.3_Silent_p.T228T|PDE4C_uc002nih.3_Silent_p.T283T|PDE4C_uc010ebk.2_Silent_p.T407T|PDE4C_uc002nii.3_Silent_p.T481T|PDE4C_uc010ebl.2_Silent_p.T227T	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	513					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	TCTCCACCATGGTCTTGAGGT	0.592													16	14					0	0	1	0	0
LRRC25	126364	broad.mit.edu	37	19	18507726	18507726	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:18507726C>T	uc002niw.2	-	1	690	c.48G>A	c.(46-48)CGG>CGA	p.R16R	LRRC25_uc002nix.2_Silent_p.R16R	NM_145256	NP_660299	Q8N386	LRC25_HUMAN	leucine rich repeat containing 25 precursor	16						integral to membrane					0						TGTCTGACTCCCGCAGCAGCA	0.622													25	24					0	0	1	0	0
UPF1	5976	broad.mit.edu	37	19	18968229	18968229	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:18968229T>G	uc002nkg.2	+	15	2377	c.2102T>G	c.(2101-2103)GTG>GGG	p.V701G	UPF1_uc002nkf.2_Missense_Mutation_p.V690G|UPF1_uc002nkh.2_5'Flank	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	701					cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CGCCTGGTGGTGCTGGGCATC	0.637													18	41					0	0	1	0	0
UPF1	5976	broad.mit.edu	37	19	18975061	18975061	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:18975061G>A	uc002nkg.2	+	20	3165	c.2890_splice	c.e20+1	p.G964_splice	UPF1_uc002nkf.2_Splice_Site_p.G953_splice|UPF1_uc002nkh.2_Splice_Site_p.G208_splice	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1						cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						AGCAGCCAGGGTGAGTCGCTC	0.617													34	63					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22941120	22941120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:22941120G>A	uc010xrh.1	-	5	1318	c.1318C>T	c.(1318-1320)CAT>TAT	p.H440Y		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTTCCAGTATGAATTATCTTA	0.343													5	23					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30936068	30936068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:30936068G>A	uc002nsu.1	+	2	1737	c.1599G>A	c.(1597-1599)ATG>ATA	p.M533I	ZNF536_uc010edd.1_Missense_Mutation_p.M533I	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	533					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GCATGGCCATGGAACATGGCT	0.602													78	55					0	0	1	0	0
ZNF599	148103	broad.mit.edu	37	19	35251315	35251315	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:35251315G>A	uc010edn.1	-	4	779	c.391C>T	c.(391-393)CAG>TAG	p.Q131*	ZNF599_uc010edm.1_Nonsense_Mutation_p.Q94*	NM_001007248	NP_001007249	Q96NL3	ZN599_HUMAN	zinc finger protein 599	131					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			TTCCCTTCCTGAATTTTTATT	0.453													67	39					0	0	1	0	0
WDR62	284403	broad.mit.edu	37	19	36572471	36572471	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:36572471A>G	uc002odc.2	+	10	1461	c.1370A>G	c.(1369-1371)AAT>AGT	p.N457S	WDR62_uc002odd.2_Missense_Mutation_p.N457S	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	457					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			ATCTTCAGCAATGTGAGTGGC	0.473													30	50					0	0	1	0	0
ZNF382	84911	broad.mit.edu	37	19	37118320	37118320	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:37118320C>T	uc002oek.2	+	5	1634	c.1521C>T	c.(1519-1521)CTC>CTT	p.L507L	ZNF382_uc010efa.2_Silent_p.L458L|ZNF382_uc010efb.2_Silent_p.L506L|ZNF382_uc002oel.2_Silent_p.L506L	NM_032825	NP_116214	Q96SR6	ZN382_HUMAN	zinc finger protein 382	507	Required for transcriptional repression activity; probably mediates sequence- specific DNA-binding (By similarity).|C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			AATCAAACCTCATTCGCCATC	0.428													31	32					0	0	1	0	0
CAPN12	147968	broad.mit.edu	37	19	39234686	39234686	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:39234686C>T	uc002ojd.1	-	1	429	c.120G>A	c.(118-120)CTG>CTA	p.L40L		NM_144691	NP_653292	Q6ZSI9	CAN12_HUMAN	calpain 12	40					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2	all_cancers(60;2.87e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			TCCCCGAATCCAGGCAGGCTG	0.647													37	37					0	0	1	0	0
SAMD4B	55095	broad.mit.edu	37	19	39870640	39870640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:39870640C>T	uc002olb.2	+	12	2600	c.1565C>T	c.(1564-1566)TCC>TTC	p.S522F	SAMD4B_uc002ola.2_Missense_Mutation_p.S522F	NM_018028	NP_060498	Q5PRF9	SMAG2_HUMAN	sterile alpha motif domain containing 4B	522							protein binding				0	all_cancers(60;2.5e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			CGGCTGCTATCCTGGAAACAG	0.572													20	39					0	0	1	0	0
SAMD4B	55095	broad.mit.edu	37	19	39871305	39871305	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:39871305C>T	uc002olb.2	+	13	2763	c.1728C>T	c.(1726-1728)TTC>TTT	p.F576F	SAMD4B_uc002ola.2_Silent_p.F576F	NM_018028	NP_060498	Q5PRF9	SMAG2_HUMAN	sterile alpha motif domain containing 4B	576							protein binding				0	all_cancers(60;2.5e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			AGCGGCAGTTCCCAATGCCTC	0.692													29	21					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41072173	41072173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:41072173G>A	uc002ony.2	+	30	6330	c.6244G>A	c.(6244-6246)GAG>AAG	p.E2082K	SPTBN4_uc002onz.2_Missense_Mutation_p.E2082K|SPTBN4_uc010egx.2_Missense_Mutation_p.E825K	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	2082	Spectrin 18.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CAGCGTGGATGAGGTGGAGCA	0.667													3	5					0	0	1	0	0
CEACAM5	1048	broad.mit.edu	37	19	42219752	42219752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:42219752C>T	uc002ork.2	+	4	1008	c.887C>T	c.(886-888)TCC>TTC	p.S296F	CEACAM5_uc010ehz.1_3'UTR|CEACAM5_uc002orj.1_Missense_Mutation_p.S296F|CEACAM5_uc002orl.2_Missense_Mutation_p.S296F	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	296	Ig-like 3.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		AATAGTGGATCCTATACGTGC	0.478													22	41					0	0	1	0	0
CEACAM5	1048	broad.mit.edu	37	19	42222157	42222157	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:42222157C>T	uc002ork.2	+	6	1469	c.1348C>T	c.(1348-1350)CTG>TTG	p.L450L	CEACAM5_uc002orj.1_Silent_p.L449L|CEACAM5_uc002orl.2_Silent_p.L450L	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	450	Ig-like 5.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		GTATTCTTGGCTGATTGATGG	0.522													46	35					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42485983	42485983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:42485983C>T	uc002osg.2	-	10	1347	c.1193G>A	c.(1192-1194)GGG>GAG	p.G398E	ATP1A3_uc010xwf.1_Missense_Mutation_p.G409E|ATP1A3_uc010xwg.1_Missense_Mutation_p.G368E|ATP1A3_uc010xwh.1_Missense_Mutation_p.G411E|ATP1A3_uc002osh.2_Missense_Mutation_p.G398E	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	398	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						AAATGAGGTCCCTGGGGGAGG	0.632													25	62					0	0	1	0	0
PSG3	5671	broad.mit.edu	37	19	43233974	43233974	+	Missense_Mutation	SNP	C	T	T	rs151272583		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:43233974C>T	uc002oue.2	-	4	1076	c.944G>A	c.(943-945)CGA>CAA	p.R315Q	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.R337Q	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	315	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GCCACCATATCGGTCCTGTAT	0.483													69	126					0	0	1	0	0
PSG3	5671	broad.mit.edu	37	19	43244488	43244488	+	Missense_Mutation	SNP	C	T	T	rs144627053	byFrequency	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:43244488C>T	uc002oue.2	-	1	181	c.49G>A	c.(49-51)GGG>AGG	p.G17R	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.G39R	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	17					defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				AGCAGGAGCCCCTTCCAGGTG	0.612													57	126					0	0	1	0	0
PSG4	5672	broad.mit.edu	37	19	43702363	43702363	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:43702363C>T	uc002ovy.2	-	3	597	c.495G>A	c.(493-495)GTG>GTA	p.V165V	PSG6_uc010xwk.1_Silent_p.V4V|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Intron|PSG4_uc002ovz.2_Silent_p.V165V	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	165	Ig-like C2-type 1.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				AGGTTAAGATCACAGCCTCCA	0.547													77	162					0	0	1	0	0
LYPD3	27076	broad.mit.edu	37	19	43967920	43967920	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:43967920G>A	uc002owl.1	-	3	321	c.213C>T	c.(211-213)ATC>ATT	p.I71I	LYPD3_uc002owm.2_Silent_p.I71I	NM_014400	NP_055215	O95274	LYPD3_HUMAN	GPI-anchored metastasis-associated protein	71	UPAR/Ly6 1.					anchored to plasma membrane				pancreas(1)	1		Prostate(69;0.0153)				ATTGTCCGTGGACTAGGGAGA	0.642													24	12					0	0	1	0	0
ZNF224	7767	broad.mit.edu	37	19	44610893	44610893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:44610893C>T	uc002oyh.1	+	6	882	c.580C>T	c.(580-582)CAT>TAT	p.H194Y	uc002oyi.2_RNA	NM_013398	NP_037530	Q9NZL3	ZN224_HUMAN	zinc finger protein 224	194	C2H2-type 1.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				CCTTCGTATTCATCAGAGAGT	0.423													42	82					0	0	1	0	0
ZNF229	7772	broad.mit.edu	37	19	44933093	44933093	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:44933093G>A	uc002oze.1	-	6	2297	c.1863C>T	c.(1861-1863)GTC>GTT	p.V621V	ZNF229_uc010ejk.1_Silent_p.V275V|ZNF229_uc010ejl.1_Silent_p.V615V	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	621	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				CTCCAGTGTGGACCCTCTGAT	0.542													39	67					0	0	1	0	0
PPP5C	5536	broad.mit.edu	37	19	46857023	46857023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:46857023C>T	uc002pem.2	+	2	200	c.140C>T	c.(139-141)GCC>GTC	p.A47V	PPP5C_uc010xya.1_5'UTR|PPP5C_uc002pen.2_Missense_Mutation_p.A47V	NM_006247	NP_006238	P53041	PPP5_HUMAN	protein phosphatase 5, catalytic subunit	47	TPR 1.				mitosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein dephosphorylation|transcription, DNA-dependent	Golgi apparatus|nucleus	metal ion binding|protein binding|protein serine/threonine phosphatase activity|signal transducer activity			lung(1)|pancreas(1)	2		Ovarian(192;0.0731)|all_neural(266;0.196)		OV - Ovarian serous cystadenocarcinoma(262;0.000196)|all cancers(93;0.00192)|GBM - Glioblastoma multiforme(486;0.0499)|Epithelial(262;0.0504)		TACGAGAACGCCATCAAGTTC	0.607													11	32					0	0	1	0	0
C5AR1	728	broad.mit.edu	37	19	47823664	47823664	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:47823664C>T	uc002pgj.1	+	2	679	c.630C>T	c.(628-630)GGC>GGT	p.G210G		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	210	Helical; Name=5; (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		TGGTCCTGGGCTTCCTGTGGC	0.617													51	110					0	0	1	0	0
ZNF114	163071	broad.mit.edu	37	19	48789585	48789585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:48789585C>T	uc002pil.1	+	6	1201	c.704C>T	c.(703-705)TCC>TTC	p.S235F	ZNF114_uc010elv.1_Missense_Mutation_p.S235F|ZNF114_uc002pim.1_Missense_Mutation_p.S235F|ZNF114_uc002pin.2_Missense_Mutation_p.S201F	NM_153608	NP_705836	Q8NC26	ZN114_HUMAN	zinc finger protein 114	235					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_epithelial(76;8.01e-05)|all_lung(116;0.000112)|Lung NSC(112;0.000192)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;7.56e-05)|all cancers(93;0.000113)|Epithelial(262;0.00962)|GBM - Glioblastoma multiforme(486;0.0153)		GAAGACGGATCCCTTAGGGCA	0.473													25	78					0	0	1	0	0
TRPM4	54795	broad.mit.edu	37	19	49674964	49674964	+	Missense_Mutation	SNP	G	A	A	rs145771389	byFrequency	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:49674964G>A	uc002pmw.2	+	8	1060	c.988G>A	c.(988-990)GAA>AAA	p.E330K	TRPM4_uc010emu.2_Missense_Mutation_p.E330K|TRPM4_uc010yak.1_5'UTR|TRPM4_uc002pmx.2_Missense_Mutation_p.E156K|TRPM4_uc010emv.2_Missense_Mutation_p.E215K|TRPM4_uc010yal.1_Missense_Mutation_p.E47K	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	330	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		CAGGCAAGGCGAAGCCCGAGA	0.547													36	32					0	0	1	0	0
KLK5	25818	broad.mit.edu	37	19	51453182	51453182	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:51453182G>A	uc002pue.2	-	4	482	c.264C>T	c.(262-264)CCC>CCT	p.P88P	KLK5_uc002puf.2_Silent_p.P88P|KLK5_uc002pug.2_Silent_p.P88P	NM_001077491	NP_001070959	Q9Y337	KLK5_HUMAN	kallikrein-related peptidase 5 preproprotein	88	Peptidase S1.				epidermis development|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00379)|GBM - Glioblastoma multiforme(134;0.00888)		AGAGCTGGTTGGGCCTTAGCA	0.632													11	27					0	0	1	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51919278	51919278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:51919278G>A	uc002pwo.2	-	5	1514	c.898C>T	c.(898-900)CCC>TCC	p.P300S	SIGLEC10_uc002pwp.2_Missense_Mutation_p.P242S|SIGLEC10_uc002pwq.2_Missense_Mutation_p.P242S|SIGLEC10_uc002pwr.2_Missense_Mutation_p.P300S|SIGLEC10_uc010ycy.1_Intron|SIGLEC10_uc010ycz.1_Missense_Mutation_p.P252S|SIGLEC10_uc010eow.2_Missense_Mutation_p.P112S|SIGLEC10_uc002pws.1_Intron	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	300	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		GGGCCCCAGGGATGGGACGAG	0.662													11	29					0	0	1	0	0
FPR2	2358	broad.mit.edu	37	19	52272349	52272349	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:52272349C>T	uc002pxr.2	+	2	483	c.438C>T	c.(436-438)ATC>ATT	p.I146I	FPR2_uc002pxs.3_Silent_p.I146I|FPR2_uc010epf.2_Silent_p.I146I	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	146	Helical; Name=4; (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						TGAAGGTGATCGTCGGACCTT	0.478													27	53					0	0	1	0	0
ZNF613	79898	broad.mit.edu	37	19	52448624	52448624	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:52448624A>T	uc002pxz.1	+	6	1911	c.1488A>T	c.(1486-1488)AAA>AAT	p.K496N	ZNF613_uc002pya.1_Missense_Mutation_p.K460N	NM_001031721	NP_001026891	Q6PF04	ZN613_HUMAN	zinc finger protein 613 isoform 1	496	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.0183)		TCAGAGATAAATCATGTCTCA	0.453													17	24					0	0	1	0	0
ZNF480	147657	broad.mit.edu	37	19	52825180	52825180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:52825180C>T	uc010ydl.1	+	5	747	c.677C>T	c.(676-678)ACT>ATT	p.T226I	ZNF480_uc002pyv.2_Missense_Mutation_p.T149I|ZNF480_uc010ydm.1_Missense_Mutation_p.T183I|ZNF480_uc010epn.2_Missense_Mutation_p.T57I|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	226					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		GTAATCCATACTGTAGAGAAA	0.368													32	27					0	0	1	0	0
VN1R4	317703	broad.mit.edu	37	19	53770022	53770022	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:53770022C>T	uc010ydu.1	-	1	897	c.897G>A	c.(895-897)TGG>TGA	p.W299*		NM_173857	NP_776256	Q7Z5H5	VN1R4_HUMAN	vomeronasal 1 receptor 4	299	Cytoplasmic (Potential).				response to pheromone	actin cytoskeleton|cytoplasm|integral to membrane|plasma membrane	pheromone receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.00294)		GTCATCTTTTCCAGGCAAAAC	0.403										HNSCC(26;0.072)			10	24					0	0	1	0	0
LILRA2	11027	broad.mit.edu	37	19	55086907	55086907	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:55086907C>T	uc002qgg.3	+	5	929	c.840C>T	c.(838-840)TTC>TTT	p.F280F	LILRA2_uc010ern.2_Silent_p.F280F|LILRA2_uc002qgf.2_Silent_p.F280F|LILRA2_uc010yfe.1_Silent_p.F280F|LILRA2_uc010yff.1_Silent_p.F268F|LILRA2_uc010ero.2_Silent_p.F268F|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	280	Ig-like C2-type 3.|Extracellular (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		AGGCCAACTTCACCCTGGGCC	0.627													57	39					0	0	1	0	0
BRSK1	84446	broad.mit.edu	37	19	55805463	55805463	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:55805463C>T	uc002qkg.2	+	5	814	c.537C>T	c.(535-537)TCC>TCT	p.S179S	BRSK1_uc002qkf.2_Silent_p.S195S	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	179	Protein kinase.				establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		GCATGGCGTCCCTGCAGGTGG	0.612													86	181					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56369458	56369458	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:56369458C>T	uc002qmd.3	+	3	1121	c.699C>T	c.(697-699)TTC>TTT	p.F233F	NLRP4_uc002qmf.2_Silent_p.F158F|NLRP4_uc010etf.2_Silent_p.F64F	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	233	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TCGACAGCTTCGAAGAGCTGC	0.547													55	41					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56424264	56424264	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:56424264G>A	uc010ygg.1	-	5	944	c.919C>T	c.(919-921)CTG>TTG	p.L307L		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	307	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		ATAATAAACAGGAGCTTCTCT	0.448													26	27					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57327355	57327355	+	Missense_Mutation	SNP	G	A	A	rs143073381		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr19:57327355G>A	uc002qnu.2	-	7	2806	c.2455C>T	c.(2455-2457)CGT>TGT	p.R819C	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.R790C|PEG3_uc002qnv.2_Missense_Mutation_p.R819C|PEG3_uc002qnw.2_Missense_Mutation_p.R695C|PEG3_uc002qnx.2_Missense_Mutation_p.R693C|PEG3_uc010etr.2_Missense_Mutation_p.R819C	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	819					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CCTCCAGCACGAACTCTCTGA	0.458													44	81					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1926269	1926269	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:1926269G>A	uc002qxe.2	-	10	2099	c.1272C>T	c.(1270-1272)TTC>TTT	p.F424F	MYT1L_uc002qxd.2_Silent_p.F424F|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	424					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TGGTCATGTCGAACACCTCTT	0.567													62	37					0	0	1	0	0
DDX1	1653	broad.mit.edu	37	2	15769734	15769734	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:15769734C>T	uc002rce.2	+	24	2172	c.1884C>T	c.(1882-1884)TAC>TAT	p.Y628Y		NM_004939	NP_004930	Q92499	DDX1_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	628	Helicase C-terminal.|Necessary for interaction with replicase polyprotein 1ab nsp14 of IBV.|Necessary for interaction with HNRNPK.				DNA duplex unwinding|double-strand break repair|multicellular organismal development|regulation of transcription, DNA-dependent|regulation of translational initiation|spliceosome assembly|transcription, DNA-dependent	cleavage body|stress granule|tRNA-splicing ligase complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|DNA/RNA helicase activity|exonuclease activity|poly(A) RNA binding|protein binding|RNA helicase activity|transcription cofactor activity			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.197)	all_epithelial(98;2.96e-07)|Acute lymphoblastic leukemia(84;4.24e-05)|Ovarian(717;0.0694)	GBM - Glioblastoma multiforme(3;0.00969)	Epithelial(75;4.35e-05)|OV - Ovarian serous cystadenocarcinoma(76;0.133)		AGGTTTGGTACCATGTATGTA	0.358													13	20					0	0	1	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17697867	17697867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:17697867C>T	uc002rcl.1	-	1	1840	c.1816G>A	c.(1816-1818)GAA>AAA	p.E606K	RAD51AP2_uc010exn.1_Missense_Mutation_p.E597K	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	606										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					AAAATGCATTCCTCTTCTAAT	0.269													7	7					0	0	1	0	0
NT5C1B	93034	broad.mit.edu	37	2	18757519	18757519	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:18757519A>T	uc002rcz.2	-	9	1544	c.1440T>A	c.(1438-1440)TTT>TTA	p.F480L	NT5C1B_uc002rcy.2_Missense_Mutation_p.F480L|NT5C1B_uc010exr.2_Missense_Mutation_p.F422L|NT5C1B_uc010yju.1_Missense_Mutation_p.F420L|NT5C1B_uc002rda.2_Missense_Mutation_p.F420L|NT5C1B_uc010yjv.1_Missense_Mutation_p.F497L|NT5C1B_uc010yjw.1_Missense_Mutation_p.F463L|NT5C1B_uc010exs.2_Missense_Mutation_p.F482L	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	480					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				GCTCCTTGGTAAAATGTTCAG	0.423													26	22					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21228678	21228678	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:21228678G>A	uc002red.2	-	26	11190	c.11062C>T	c.(11062-11064)CTA>TTA	p.L3688L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3688					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCCAGCTTTAGGAAATCCCAT	0.433													215	418					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21230105	21230105	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:21230105C>T	uc002red.2	-	26	9763	c.9635G>A	c.(9634-9636)AGA>AAA	p.R3212K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3212	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGCATTGTTTCTGTTTTTTTC	0.363													165	312					0	0	1	0	0
HADHB	3032	broad.mit.edu	37	2	26502047	26502047	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:26502047C>T	uc002rgz.2	+	9	926	c.675C>T	c.(673-675)CAC>CAT	p.H225H	HADHB_uc010ykv.1_Silent_p.H203H|HADHB_uc010ykw.1_Silent_p.H210H|HADHB_uc002rha.2_Intron|HADHB_uc010ykx.1_Silent_p.H151H	NM_000183	NP_000174	P55084	ECHB_HUMAN	mitochondrial trifunctional protein, beta	225					fatty acid beta-oxidation	mitochondrial nucleoid	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acyltransferase activity|enoyl-CoA hydratase activity|protein binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCATGGGCCACTCTGCAGACC	0.537													40	93					0	0	1	0	0
OTOF	9381	broad.mit.edu	37	2	26690042	26690042	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:26690042G>A	uc002rhk.2	-	35	4414	c.4287C>T	c.(4285-4287)TTC>TTT	p.F1429F	OTOF_uc010yla.1_Silent_p.F159F|OTOF_uc002rhh.2_Silent_p.F662F|OTOF_uc002rhi.2_Silent_p.F739F|OTOF_uc002rhj.2_Silent_p.F662F	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1429	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GAAGCAAGTTGAAAGTGTGCA	0.597													50	40					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	30955419	30955419	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:30955419C>T	uc002rnn.2	-	19	1988	c.1812G>A	c.(1810-1812)GGG>GGA	p.G604G	CAPN13_uc002rnm.2_RNA	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	604					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					TGATGAAGATCCCTCTGAGGA	0.617													10	15					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33500129	33500129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:33500129G>A	uc002ros.2	+	17	2844	c.2844G>A	c.(2842-2844)ATG>ATA	p.M948I	LTBP1_uc002rot.2_Missense_Mutation_p.M622I|LTBP1_uc002rou.2_Missense_Mutation_p.M621I|LTBP1_uc002rov.2_Missense_Mutation_p.M568I|LTBP1_uc010ymz.1_Missense_Mutation_p.M621I|LTBP1_uc010yna.1_Missense_Mutation_p.M568I	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	947	EGF-like 5; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CAGGATTTATGGCCAGTGAGG	0.463													37	26					0	0	1	0	0
VIT	5212	broad.mit.edu	37	2	37028483	37028483	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:37028483G>A	uc002rpl.2	+	13	1319	c.1098G>A	c.(1096-1098)ACG>ACA	p.T366T	VIT_uc002rpm.2_Silent_p.T344T|VIT_uc010ezv.2_Silent_p.T322T|VIT_uc010ezw.2_Silent_p.T323T	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	351	VWFA 1.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				AGACACACACGAATTCTCGAG	0.393													115	92					0	0	1	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48809549	48809549	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:48809549C>T	uc010yol.1	+	1	1824	c.1777C>T	c.(1777-1779)CTG>TTG	p.L593L	STON1_uc002rwo.3_Silent_p.L593L|STON1_uc010fbm.2_Silent_p.L593L|STON1-GTF2A1L_uc002rwp.1_Silent_p.L593L|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Silent_p.L593L	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	593					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			GCAGAAGTCTCTGAAAGCTAA	0.473													30	65					0	0	1	0	0
PLEK	5341	broad.mit.edu	37	2	68615584	68615584	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:68615584C>T	uc002sen.3	+	6	885	c.723C>T	c.(721-723)TTC>TTT	p.F241F	PLEK_uc010fde.2_Silent_p.F241F	NM_002664	NP_002655	P08567	PLEK_HUMAN	pleckstrin	241					actin cytoskeleton reorganization|cortical actin cytoskeleton organization|hemopoietic progenitor cell differentiation|inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway|integrin-mediated signaling pathway|negative regulation of calcium-mediated signaling|negative regulation of inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|platelet aggregation|positive regulation of actin filament bundle assembly|positive regulation of actin filament depolymerization|positive regulation of inositol-polyphosphate 5-phosphatase activity|positive regulation of integrin activation|positive regulation of platelet activation|protein kinase C signaling cascade|protein secretion by platelet|regulation of cell diameter|ruffle organization|thrombin receptor signaling pathway|vesicle docking involved in exocytosis	cytosol|extracellular region|membrane fraction|ruffle membrane|soluble fraction	phosphatidylinositol-3,4-bisphosphate binding|protein homodimerization activity|protein kinase C binding			ovary(1)	1		Ovarian(717;0.0129)		STAD - Stomach adenocarcinoma(1183;0.00159)|READ - Rectum adenocarcinoma(193;0.0419)		AAGAAGAATTCAGAGGGGTCA	0.433													36	88					0	0	1	0	0
BMP10	27302	broad.mit.edu	37	2	69093563	69093563	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:69093563C>T	uc002sez.1	-	2	634	c.475G>A	c.(475-477)GAT>AAT	p.D159N		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	159					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						TCTACTCCATCGTATATCATA	0.453													30	38					0	0	1	0	0
SLC4A5	57835	broad.mit.edu	37	2	74477560	74477560	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:74477560G>A	uc002sko.1	-	12	1565	c.1563C>T	c.(1561-1563)TCC>TCT	p.S521S	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Silent_p.S521S|SLC4A5_uc010ffc.1_Silent_p.S521S|SLC4A5_uc002skp.1_Silent_p.S457S|SLC4A5_uc002sks.1_Silent_p.S521S	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	521	Cytoplasmic (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						TGGCAGAGATGGACTGAATGT	0.527											OREG0014716	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	114	84					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	96458262	96458262	+	RNA	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:96458262C>T	uc010yuf.1	+	3		c.280C>T				NM_207328				glycerol-3-phosphate acyltransferase 2,																		CTTTGTGGGTCGCTGTTGCCA	0.607													16	28					0	0	1	0	0
KIAA1310	55683	broad.mit.edu	37	2	97271121	97271121	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:97271121G>A	uc002swn.3	-	15	2015	c.1869C>T	c.(1867-1869)TCC>TCT	p.S623S	KIAA1310_uc002swh.3_Silent_p.S511S|KIAA1310_uc002swi.3_Silent_p.S550S|KIAA1310_uc002swj.3_RNA|KIAA1310_uc002swk.3_Silent_p.S536S|KIAA1310_uc010fhz.2_Silent_p.S443S|KIAA1310_uc002swl.3_Silent_p.S524S|KIAA1310_uc002swm.3_RNA|KIAA1310_uc010yur.1_Silent_p.S417S|KIAA1310_uc002swo.2_5'UTR|KIAA1310_uc002swp.1_Silent_p.S524S	NM_001115016	NP_001108488	Q9P2N6	K1310_HUMAN	hypothetical protein LOC55683 isoform a	649											0						GGGAGATAAGGGACACCTTGA	0.527													51	36					0	0	1	0	0
CNNM4	26504	broad.mit.edu	37	2	97462804	97462804	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:97462804C>T	uc002swx.2	+	2	1556	c.1458C>T	c.(1456-1458)CCC>CCT	p.P486P	CNNM4_uc010yuy.1_5'UTR|hsa-mir-3127|MI0014144_5'Flank	NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	486	CBS 2.				biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane				breast(2)|ovary(1)	3						AGGGTGACCCCTTCTACGAGG	0.587													20	16					0	0	1	0	0
ANKRD36	375248	broad.mit.edu	37	2	97862340	97862340	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:97862340G>A	uc010yva.1	+	41	2806	c.2562G>A	c.(2560-2562)CAG>CAA	p.Q854Q	ANKRD36_uc002sxo.2_Silent_p.Q270Q|ANKRD36_uc002sxp.3_RNA|ANKRD36_uc002sxq.1_Intron	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	854											0						TGTCTTCTCAGAAACCACCAA	0.333													6	25					0	0	1	0	0
MGAT4A	11320	broad.mit.edu	37	2	99291553	99291553	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:99291553C>T	uc002sze.2	-	4	662	c.348G>A	c.(346-348)TTG>TTA	p.L116L	MGAT4A_uc010fil.2_5'UTR	NM_012214	NP_036346	Q9UM21	MGT4A_HUMAN	alpha-1,3-mannosyl-glycoprotein	116	Lumenal (Potential).				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			skin(1)	1						CTTCATTTTTCAATAAATGAG	0.348													39	40					0	0	1	0	0
C2orf55	343990	broad.mit.edu	37	2	99448865	99448865	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:99448865C>T	uc002szf.1	-	5	780	c.486G>A	c.(484-486)AGG>AGA	p.R162R		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	162											0						CTGGGGGGCTCCTGGGCAGCC	0.617													56	37					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100175416	100175416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:100175416G>A	uc002tag.2	-	21	3442	c.3206C>T	c.(3205-3207)GCC>GTC	p.A1069V	AFF3_uc002taf.2_Missense_Mutation_p.A1094V	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	1069					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						GTACAGGAGGGCCAGGCATCG	0.468											OREG0014830	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	24					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100210471	100210471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:100210471G>A	uc002tag.2	-	14	1888	c.1652C>T	c.(1651-1653)CCC>CTC	p.P551L	AFF3_uc002taf.2_Missense_Mutation_p.P576L|AFF3_uc010fiq.1_Missense_Mutation_p.P551L|AFF3_uc010yvr.1_Missense_Mutation_p.P704L|AFF3_uc002tah.1_Missense_Mutation_p.P576L	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	551					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						CACGGCCGCGGGCGGGGACTT	0.706													32	90					0	0	1	0	0
IL1R1	3554	broad.mit.edu	37	2	102792980	102792980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:102792980G>A	uc002tbq.2	+	12	1789	c.1471G>A	c.(1471-1473)GAG>AAG	p.E491K	IL1R1_uc010fix.2_Missense_Mutation_p.E460K|IL1R1_uc002tbr.2_Missense_Mutation_p.E491K	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	491	TIR.|Cytoplasmic (Potential).				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	GCTTGAGCTGGAGAAAATCCA	0.443													12	24					0	0	1	0	0
IL18R1	8809	broad.mit.edu	37	2	103001376	103001376	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:103001376G>A	uc002tbw.3	+	7	877	c.727G>A	c.(727-729)GAA>AAA	p.E243K	IL18R1_uc010ywc.1_Missense_Mutation_p.E243K|IL18R1_uc010ywd.1_Missense_Mutation_p.E88K|IL18R1_uc010fiy.2_Missense_Mutation_p.E243K	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	243	Ig-like C2-type 3.|Extracellular (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						TTTGCTGAATGAAGAGGATGT	0.333													24	59					0	0	1	0	0
IL18R1	8809	broad.mit.edu	37	2	103001406	103001406	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:103001406G>A	uc002tbw.3	+	7	907	c.757G>A	c.(757-759)GAA>AAA	p.E253K	IL18R1_uc010ywc.1_Missense_Mutation_p.E253K|IL18R1_uc010ywd.1_Missense_Mutation_p.E98K|IL18R1_uc010fiy.2_Missense_Mutation_p.E253K	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	253	Ig-like C2-type 3.|Extracellular (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						GATGTTCGGGGAAGAAAATGG	0.328													20	47					0	0	1	0	0
IL18RAP	8807	broad.mit.edu	37	2	103040504	103040504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:103040504C>T	uc002tbx.2	+	4	788	c.304C>T	c.(304-306)CCT>TCT	p.P102S	IL18RAP_uc010fiz.2_Intron	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	102	Extracellular (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						GAAAAGCTATCCTCACATCAT	0.428													21	36					0	0	1	0	0
SH3RF3	344558	broad.mit.edu	37	2	109964349	109964349	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:109964349T>C	uc010ywt.1	+	2	793	c.793T>C	c.(793-795)TAT>CAT	p.Y265H		NM_001099289	NP_001092759	Q8TEJ3	SH3R3_HUMAN	SH3 domain containing ring finger 3	265	SH3 2.						zinc ion binding			ovary(1)	1						AAAAGCACTTTATGATTTCGA	0.607													8	14					0	0	1	0	0
CYP27C1	339761	broad.mit.edu	37	2	127950810	127950810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:127950810C>T	uc002tod.2	-	7	993	c.862G>A	c.(862-864)GAG>AAG	p.E288K		NM_001001665	NP_001001665	Q4G0S4	C27C1_HUMAN	cytochrome P450, family 27, subfamily C,	288						membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.071)		GGCCGGAACTCCTTGGCCCGA	0.552													27	62					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131519695	131519695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:131519695C>T	uc002trw.2	+	2	240	c.50C>T	c.(49-51)TCC>TTC	p.S17F	FAM123C_uc010fmv.2_Missense_Mutation_p.S17F|FAM123C_uc010fms.1_Missense_Mutation_p.S17F|FAM123C_uc010fmt.1_Missense_Mutation_p.S17F|FAM123C_uc010fmu.1_Missense_Mutation_p.S17F	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	17										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		CTGCAGGTTTCCCACGAGAAA	0.617													15	15					0	0	1	0	0
GPR39	2863	broad.mit.edu	37	2	133175391	133175391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:133175391G>A	uc002ttl.2	+	1	1245	c.776G>A	c.(775-777)GGG>GAG	p.G259E		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	259	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						TCGCTGGCCGGGGGCACGCGG	0.627													52	46					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138425405	138425405	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:138425405C>T	uc002tva.1	+	26	4626	c.4626C>T	c.(4624-4626)TTC>TTT	p.F1542F		NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TCATGATTTTCCTAATATTTA	0.313													4	11					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141135827	141135827	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:141135827G>A	uc002tvj.1	-	68	11532	c.10560C>T	c.(10558-10560)TTC>TTT	p.F3520F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3520	Extracellular (Potential).|LDL-receptor class A 26.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TGGCACAGAGGAAATCTTTCA	0.378										TSP Lung(27;0.18)			35	34					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141135848	141135848	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:141135848C>T	uc002tvj.1	-	68	11511	c.10539G>A	c.(10537-10539)CAG>CAA	p.Q3513Q		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3513	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATGTACATGTCTGTGGCTCTG	0.383										TSP Lung(27;0.18)			26	24					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141680542	141680542	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:141680542C>T	uc002tvj.1	-	21	4283	c.3311G>A	c.(3310-3312)TGG>TAG	p.W1104*	LRP1B_uc010fnl.1_Nonsense_Mutation_p.W286*	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1104	Extracellular (Potential).|LDL-receptor class A 9.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACCTGTACTCCAACAGGAAAA	0.433										TSP Lung(27;0.18)			46	39					0	0	1	0	0
PABPC1P2	728773	broad.mit.edu	37	2	147346196	147346196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:147346196C>T	uc002twf.3	+	1	1572	c.656C>T	c.(655-657)CCC>CTC	p.P219L		NR_026904				RecName: Full=Putative protein PABPC1-like; AltName: Full=Polyadenylate-binding protein pseudogene 2;												0						GTAATCAACCCCTACCAGCCA	0.507													11	16					0	0	1	0	0
MBD5	55777	broad.mit.edu	37	2	149226733	149226733	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:149226733C>T	uc002twm.3	+	9	2209	c.1221C>T	c.(1219-1221)CTC>CTT	p.L407L	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Silent_p.L407L|MBD5_uc002twn.1_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	407	Pro-rich.					chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		CAAGTAATCTCCCATTGCCAA	0.438													52	84					0	0	1	0	0
MBD5	55777	broad.mit.edu	37	2	149240891	149240891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:149240891C>T	uc002twm.3	+	10	3719	c.2731C>T	c.(2731-2733)CCA>TCA	p.P911S	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.P911S|MBD5_uc002two.2_5'Flank|MBD5_uc002twp.2_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	911						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		CAACCATCTTCCACACCCCTT	0.478													127	104					0	0	1	0	0
CYTIP	9595	broad.mit.edu	37	2	158272240	158272240	+	Silent	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:158272240T>C	uc002tzj.1	-	8	1101	c.1029A>G	c.(1027-1029)AAA>AAG	p.K343K	CYTIP_uc010zcl.1_Silent_p.K237K	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	343					regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						CAGGGATAAATTTCAAGAGTT	0.473													36	27					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163374648	163374648	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:163374648A>T	uc002uch.1	-	4	696	c.484T>A	c.(484-486)TTC>ATC	p.F162I	KCNH7_uc002uci.2_Missense_Mutation_p.F162I	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	162	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	AGACCAGGGAATTTGAACCCA	0.383													36	40					0	0	1	0	0
SLC38A11	151258	broad.mit.edu	37	2	165755239	165755239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:165755239C>T	uc002ucv.1	-	13	1466	c.929G>A	c.(928-930)GGT>GAT	p.G310D	SLC38A11_uc002ucu.1_Missense_Mutation_p.G288D|SLC38A11_uc002ucw.1_Missense_Mutation_p.G310D	NM_173512	NP_775783	Q08AI6	S38AB_HUMAN	solute carrier family 38, member 11	310	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane				ovary(1)	1						ACAGAGCACACCCTGCATGTT	0.383													17	14					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166905439	166905439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:166905439C>T	uc010zcz.1	-	7	1003	c.985G>A	c.(985-987)GGT>AGT	p.G329S	SCN1A_uc002udo.3_Missense_Mutation_p.G198S|SCN1A_uc010fpk.2_Missense_Mutation_p.G198S	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	329	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TCTAAAAAACCCTCCAGGAAA	0.274													14	22					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168101383	168101383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:168101383G>A	uc002udx.2	+	8	3499	c.3481G>A	c.(3481-3483)GAT>AAT	p.D1161N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D986N|XIRP2_uc010fpq.2_Missense_Mutation_p.D939N|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	986	Xin 18.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CCAAGGTGGGGATGTTCGTAC	0.398													13	43					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168108064	168108064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:168108064G>A	uc002udx.2	+	8	10180	c.10162G>A	c.(10162-10164)GAC>AAC	p.D3388N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D3213N|XIRP2_uc010fpq.2_Missense_Mutation_p.D3166N|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3213					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GAGTTTTACAGACTTTTCTTG	0.388													67	63					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170058370	170058370	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:170058370G>A	uc002ues.2	-	44	8433	c.8220C>T	c.(8218-8220)ACC>ACT	p.T2740T		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2740	Extracellular (Potential).|LDL-receptor class A 17.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TCGGTGAGCAGGTGTGAAGTG	0.403													18	31					0	0	1	0	0
OLA1	29789	broad.mit.edu	37	2	174988343	174988343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:174988343G>A	uc002uih.2	-	6	796	c.610C>T	c.(610-612)CAT>TAT	p.H204Y	OLA1_uc002uii.2_Missense_Mutation_p.H46Y|OLA1_uc010fqq.2_Missense_Mutation_p.H204Y|OLA1_uc002uij.2_Missense_Mutation_p.H46Y|OLA1_uc002uik.2_Missense_Mutation_p.H174Y|OLA1_uc010fqr.2_Missense_Mutation_p.H204Y	NM_013341	NP_037473	Q9NTK5	OLA1_HUMAN	Obg-like ATPase 1 isoform 1	204					ATP catabolic process	cytoplasm	ATP binding|GTP binding|hydrolase activity|protein binding			ovary(1)|breast(1)	2						TTCCAATCATGATAGAAGCGA	0.313													41	44					0	0	1	0	0
HOXD4	3233	broad.mit.edu	37	2	177017588	177017588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:177017588C>T	uc002uks.2	+	2	935	c.686C>T	c.(685-687)TCA>TTA	p.S229L		NM_014621	NP_055436	P09016	HXD4_HUMAN	homeobox D4	229	Poly-Ser.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00765)|Epithelial(96;0.105)	Colorectal(32;0.0224)|READ - Rectum adenocarcinoma(9;0.0556)		TCTTCCTCCTCATCTTGCTCC	0.547													76	71					0	0	1	0	0
NFE2L2	4780	broad.mit.edu	37	2	178096298	178096298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:178096298C>T	uc002ulh.3	-	5	1588	c.1033G>A	c.(1033-1035)GGC>AGC	p.G345S	NFE2L2_uc002ulg.3_Missense_Mutation_p.G329S|NFE2L2_uc010zfa.1_Missense_Mutation_p.G322S|NFE2L2_uc002uli.3_Missense_Mutation_p.G329S	NM_006164	NP_006155	Q16236	NF2L2_HUMAN	nuclear factor erythroid 2-like 2 isoform 1	345					transcription from RNA polymerase II promoter	centrosome|cytosol|nucleus|plasma membrane	protein dimerization activity|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Epithelial(96;0.00442)|OV - Ovarian serous cystadenocarcinoma(117;0.00739)|all cancers(119;0.0195)|LUSC - Lung squamous cell carcinoma(2;0.036)|Lung(16;0.0935)			AGTGAAATGCCGGAGTCAGAA	0.443			Mis		NSCLC|HNSCC					HNSCC(56;0.16)			25	72					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179393040	179393040	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:179393040G>T	uc010zfg.1	-	310	99858	c.99634C>A	c.(99634-99636)CGT>AGT	p.R33212S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R26907S|TTN_uc010zfi.1_Missense_Mutation_p.R26840S|TTN_uc010zfj.1_Missense_Mutation_p.R26715S|TTN_uc002umq.2_Missense_Mutation_p.R229S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	34139							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACTGGCCACGGAAATTTTTG	0.428													4	70					1	1	1	1	0
TTN	7273	broad.mit.edu	37	2	179495596	179495596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:179495596C>T	uc010zfg.1	-	187	36609	c.36385G>A	c.(36385-36387)GAA>AAA	p.E12129K	TTN_uc010zfh.1_Missense_Mutation_p.E5824K|TTN_uc010zfi.1_Missense_Mutation_p.E5757K|TTN_uc010zfj.1_Missense_Mutation_p.E5632K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13056							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAGAGATTTCGGTTTCAAAG	0.493													38	73					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179590660	179590660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:179590660C>T	uc010zfg.1	-	67	16881	c.16657G>A	c.(16657-16659)GAC>AAC	p.D5553N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D2214N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6480							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCCGCTTGTCTTTGTACCAT	0.428													20	32					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179594885	179594885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:179594885G>A	uc010zfg.1	-	59	14734	c.14510C>T	c.(14509-14511)ACC>ATC	p.T4837I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.T1498I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5764							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAAATGTAGGTTCCAGAATC	0.468													24	20					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179595373	179595373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:179595373C>T	uc010zfg.1	-	58	14379	c.14155G>A	c.(14155-14157)GAA>AAA	p.E4719K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E1380K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5646							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGTACTTTTCACTAGCTGAT	0.398													54	55					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179595650	179595650	+	Splice_Site	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:179595650A>G	uc010zfg.1	-	57	14232	c.14008_splice	c.e57+1	p.D4670_splice	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Splice_Site_p.D1331_splice	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A								ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACAATACCAACCTAATACAT	0.338													86	167					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179610423	179610423	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:179610423G>A	uc002unb.2	-	46	16928	c.16704C>T	c.(16702-16704)TTC>TTT	p.F5568F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAGGTTATGGAACCCTGTGC	0.438													35	59					0	0	1	0	0
CERKL	375298	broad.mit.edu	37	2	182402939	182402939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:182402939C>T	uc002unx.2	-	14	1750	c.1649G>A	c.(1648-1650)GGA>GAA	p.G550E	CERKL_uc002uny.2_Missense_Mutation_p.G524E|CERKL_uc010zfm.1_Missense_Mutation_p.G506E|CERKL_uc002unz.2_Missense_Mutation_p.G272E|CERKL_uc002uoa.2_Missense_Mutation_p.G455E|CERKL_uc002uob.2_Missense_Mutation_p.G272E|CERKL_uc002uoc.2_Missense_Mutation_p.G411E|CERKL_uc010frk.2_RNA|CERKL_uc002unw.2_Missense_Mutation_p.G120E	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	550					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			TTCCATGCTTCCTCCATAAAG	0.289													12	27					0	0	1	0	0
CERKL	375298	broad.mit.edu	37	2	182468742	182468742	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:182468742C>T	uc002unx.2	-	2	404	c.303G>A	c.(301-303)GTG>GTA	p.V101V	CERKL_uc002uny.2_Silent_p.V101V|CERKL_uc010zfm.1_Silent_p.V101V|CERKL_uc002unz.2_5'UTR|CERKL_uc002uoa.2_Silent_p.V101V|CERKL_uc002uob.2_5'UTR|CERKL_uc002uoc.2_Silent_p.V101V|CERKL_uc010frk.2_RNA|CERKL_uc002uod.1_5'UTR|CERKL_uc002uoe.2_Silent_p.V101V	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	101					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			GTTTCAGTTTCACAGAGAATA	0.308													13	10					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	186692894	186692894	+	RNA	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:186692894G>A	uc002upm.2	+	5		c.3567G>A			uc010zfu.1_Missense_Mutation_p.E1327K					Homo sapiens cDNA FLJ44048 fis, clone TESTI4030669.																		AAGTTCTCAGGAACAAAAGCC	0.294													26	30					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189872240	189872240	+	Silent	SNP	A	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:189872240A>C	uc002uqj.1	+	45	3387	c.3270A>C	c.(3268-3270)CCA>CCC	p.P1090P		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1090	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CTCAAGGCCCACGTGGTGACA	0.383													4	18					0	0	1	0	0
SLC40A1	30061	broad.mit.edu	37	2	190430207	190430207	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:190430207C>T	uc002uqp.3	-	6	984	c.633G>A	c.(631-633)TGG>TGA	p.W211*		NM_014585	NP_055400	Q9NP59	S40A1_HUMAN	solute carrier family 40 (iron-regulated	211					anatomical structure morphogenesis|cellular iron ion homeostasis	cytoplasm|integral to plasma membrane	iron ion transmembrane transporter activity|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000917)|Epithelial(96;0.014)|all cancers(119;0.0491)			ATACCAAGTTCCATCCCGAAA	0.488													45	29					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196602738	196602738	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:196602738C>T	uc002utj.3	-	65	12083	c.11982G>A	c.(11980-11982)ACG>ACA	p.T3994T	DNAH7_uc002uti.3_Silent_p.T477T	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3994					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCACAAAATTCGTGGAATGGC	0.453													25	32					0	0	1	0	0
PLCL1	5334	broad.mit.edu	37	2	198968577	198968577	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:198968577A>G	uc010fsp.2	+	5	3313	c.3022A>G	c.(3022-3024)AAT>GAT	p.N1008D	PLCL1_uc002uuv.3_Missense_Mutation_p.N929D	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	1008					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	AGAACTTCATAATTTGGGGGC	0.353													5	12					0	0	1	0	0
MPP4	58538	broad.mit.edu	37	2	202545672	202545672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:202545672C>T	uc002uyk.3	-	10	1026	c.818G>A	c.(817-819)GGG>GAG	p.G273E	MPP4_uc010ftj.2_Missense_Mutation_p.G273E|MPP4_uc010zhq.1_Missense_Mutation_p.G273E|MPP4_uc010zhr.1_Missense_Mutation_p.G273E|MPP4_uc010zhs.1_Missense_Mutation_p.G229E|MPP4_uc002uyj.3_Missense_Mutation_p.G229E|MPP4_uc010zht.1_Missense_Mutation_p.G246E|MPP4_uc002uyl.3_RNA|MPP4_uc010ftk.2_Missense_Mutation_p.G260E|MPP4_uc002uym.1_Missense_Mutation_p.G242E|MPP4_uc002uyn.2_Missense_Mutation_p.G229E	NM_033066	NP_149055	Q96JB8	MPP4_HUMAN	membrane protein, palmitoylated 4	273	SH3.					cytoplasm	protein binding				0						GAGGATGTCCCCCTTCTGGAA	0.587											OREG0015145	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	15					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207175072	207175072	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:207175072G>A	uc002vbp.2	+	5	6070	c.5820G>A	c.(5818-5820)GCG>GCA	p.A1940A		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1940							nucleic acid binding|zinc ion binding			ovary(3)	3						GCCAGACAGCGAAAATCAGCC	0.448													53	47					0	0	1	0	0
DYTN	391475	broad.mit.edu	37	2	207516587	207516588	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:207516587_207516588GG>AA	uc002vbr.1	-	12	1808_1809	c.1691_1692CC>TT	c.(1690-1692)GCC>GTT	p.A564V		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	564						plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		GGGCAGAGAAGGCCCTGCACAC	0.475													25	44					0	0	1	0	0
DYTN	391475	broad.mit.edu	37	2	207527785	207527785	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:207527785G>A	uc002vbr.1	-	11	1592	c.1475C>T	c.(1474-1476)CCC>CTC	p.P492L		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	492						plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		AACCATTTTGGGGATGTCCTG	0.502													36	44					0	0	1	0	0
MDH1B	130752	broad.mit.edu	37	2	207619954	207619954	+	Missense_Mutation	SNP	C	T	T	rs138333507		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:207619954C>T	uc002vbs.2	-	5	744	c.689G>A	c.(688-690)CGA>CAA	p.R230Q	MDH1B_uc010ziw.1_Intron|MDH1B_uc010fui.2_Missense_Mutation_p.R230Q|MDH1B_uc010fuj.2_Missense_Mutation_p.R132Q|MDH1B_uc002vbt.2_Intron	NM_001039845	NP_001034934	Q5I0G3	MDH1B_HUMAN	malate dehydrogenase 1B, NAD (soluble)	230					carbohydrate metabolic process|malate metabolic process|tricarboxylic acid cycle		binding|malate dehydrogenase activity			ovary(3)|kidney(1)	4				LUSC - Lung squamous cell carcinoma(261;0.0763)|Epithelial(149;0.131)|Lung(261;0.145)		CACCCTGCTTCGGAGGCAGTC	0.552													35	28					0	0	1	0	0
CPS1	1373	broad.mit.edu	37	2	211459282	211459282	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:211459282C>T	uc002vee.3	+	12	1347	c.1215C>T	c.(1213-1215)ACC>ACT	p.T405T	CPS1_uc010fur.2_Silent_p.T411T|CPS1_uc010fus.2_5'UTR	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	405					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		AAGCTACCACCATTACATCAG	0.368													17	27					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	212537960	212537960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:212537960C>T	uc002veg.1	-	14	1743	c.1645G>A	c.(1645-1647)GGC>AGC	p.G549S	ERBB4_uc002veh.1_Missense_Mutation_p.G549S|ERBB4_uc010zji.1_Missense_Mutation_p.G549S|ERBB4_uc010zjj.1_Missense_Mutation_p.G549S|ERBB4_uc010fut.1_Missense_Mutation_p.G549S	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	549	Extracellular (Potential).|Cys-rich.				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CAGATGGAGCCATTCTCAAAC	0.473										TSP Lung(8;0.080)			32	57					0	0	1	0	0
ATIC	471	broad.mit.edu	37	2	216184408	216184408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:216184408C>T	uc002vex.3	+	4	418	c.244C>T	c.(244-246)CCA>TCA	p.P82S	ATIC_uc010zjo.1_Missense_Mutation_p.P23S|ATIC_uc002vey.3_Missense_Mutation_p.P81S	NM_004044	NP_004035	P31939	PUR9_HUMAN	5-aminoimidazole-4-carboxamide ribonucleotide	82					IMP biosynthetic process|purine base metabolic process	cytosol	IMP cyclohydrolase activity|phosphoribosylaminoimidazolecarboxamide formyltransferase activity|protein homodimerization activity		ATIC/ALK(24)	haematopoietic_and_lymphoid_tissue(22)|ovary(2)|lung(2)|soft_tissue(2)|skin(1)	29		Renal(323;0.229)		Epithelial(149;2.02e-06)|all cancers(144;0.000316)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.0097)	Tetrahydrofolic acid(DB00116)	TCGTAATATTCCAGAAGATAA	0.313			T	ALK	ALCL								13	41					0	0	1	0	0
FN1	2335	broad.mit.edu	37	2	216271100	216271100	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:216271100C>T	uc002vfa.2	-	19	3113	c.2847G>A	c.(2845-2847)GAG>GAA	p.E949E	FN1_uc002vfb.2_Silent_p.E949E|FN1_uc002vfc.2_Silent_p.E949E|FN1_uc002vfd.2_Silent_p.E949E|FN1_uc002vfe.2_Silent_p.E949E|FN1_uc002vff.2_Silent_p.E949E|FN1_uc002vfg.2_Silent_p.E949E|FN1_uc002vfh.2_Silent_p.E949E|FN1_uc002vfi.2_Silent_p.E949E|FN1_uc002vfj.2_Silent_p.E949E	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	949	|Fibronectin type-III 4.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCTGCCCGTGCTCGCCAGGCA	0.582													29	20					0	0	1	0	0
SLC4A3	6508	broad.mit.edu	37	2	220502521	220502522	+	Silent	DNP	CC	TT	TT			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:220502521_220502522CC>TT	uc002vmp.3	+	17	3023_3024	c.2754_2755CC>TT	c.(2752-2757)TTCCTG>TTTTTG	p.918_919FL>FL	SLC4A3_uc002vmo.3_Silent_p.945_946FL>FL|SLC4A3_uc010fwm.2_Silent_p.468_469FL>FL|SLC4A3_uc010fwn.1_Silent_p.427_428FL>FL	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	918_919	Cytoplasmic (Potential).|Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACAGCCGCTTCCTGGGGGGCAA	0.619													28	20					0	0	1	0	0
EFHD1	80303	broad.mit.edu	37	2	233546325	233546325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:233546325G>A	uc002vtc.2	+	4	824	c.616G>A	c.(616-618)GAA>AAA	p.E206K	EFHD1_uc010fyf.2_Missense_Mutation_p.E110K|EFHD1_uc002vtd.2_Missense_Mutation_p.E94K	NM_025202	NP_079478	Q9BUP0	EFHD1_HUMAN	EF-hand domain family, member D1	206							calcium ion binding|protein binding				0		all_hematologic(139;0.0123)|Acute lymphoblastic leukemia(138;0.0182)|Breast(86;0.0199)|Renal(207;0.025)		Epithelial(121;2.08e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00825)|Lung(119;0.0101)		CAGTAAGTTTGAAGCAGAGTT	0.552													51	93					0	0	1	0	0
UGT1A1	54658	broad.mit.edu	37	2	234669287	234669287	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:234669287G>A	uc002vvb.2	+	1	369	c.354G>A	c.(352-354)AAG>AAA	p.K118K	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron|UGT1A9_uc002vva.2_Intron|UGT1A1_uc010znc.1_Silent_p.K118K	NM_000463	NP_000454	P22309	UD11_HUMAN	UDP glycosyltransferase 1 family, polypeptide A1	118					bilirubin conjugation|digestion|estrogen metabolic process|flavone metabolic process|heme catabolic process	endoplasmic reticulum membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding|steroid binding			central_nervous_system(1)|skin(1)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;4.1e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000435)|Lung(119;0.00211)|LUSC - Lung squamous cell carcinoma(224;0.0054)	Abacavir(DB01048)|Adenine(DB00173)|Diclofenac(DB00586)|Estradiol(DB00783)|Ezetimibe(DB00973)|Irinotecan(DB00762)|Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|Propofol(DB00818)|Rifampin(DB01045)|Troglitazone(DB00197)	AAATAAAAAAGGACTCTGCTA	0.448													34	57					0	0	1	0	0
ESPNL	339768	broad.mit.edu	37	2	239040160	239040160	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:239040160G>A	uc002vxq.3	+	9	2915	c.2805G>A	c.(2803-2805)TGG>TGA	p.W935*	ESPNL_uc010fyw.2_Nonsense_Mutation_p.W631*	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	935										pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		GTCCCGCCTGGGATACGGAGC	0.726													11	17					0	0	1	0	0
SNED1	25992	broad.mit.edu	37	2	242021733	242021733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr2:242021733G>A	uc002wah.1	+	29	4075	c.4075G>A	c.(4075-4077)GAG>AAG	p.E1359K	SNED1_uc002wai.1_Missense_Mutation_p.E561K|SNED1_uc002waj.1_Missense_Mutation_p.E413K	NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	1359					cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		GCTGTTCTCCGAGACAAAGGC	0.582													64	159					0	0	1	0	0
ATRN	8455	broad.mit.edu	37	20	3553521	3553521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:3553521C>T	uc002wim.2	+	12	2105	c.2015C>T	c.(2014-2016)TCG>TTG	p.S672L	ATRN_uc002wil.2_Missense_Mutation_p.S672L	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	672	Extracellular (Potential).				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						AACACAGGGTCGTCTCAGTGT	0.448													16	49					0	0	1	0	0
ANKRD5	63926	broad.mit.edu	37	20	10032312	10032312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:10032312G>A	uc002wno.2	+	8	2038	c.1645G>A	c.(1645-1647)GCT>ACT	p.A549T	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Missense_Mutation_p.A549T|ANKRD5_uc010gbz.2_Missense_Mutation_p.A360T	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	549	ANK 5.						calcium ion binding			ovary(1)|breast(1)	2						ATTTTACAGAGCTAACGTTAA	0.368													11	32					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19674039	19674039	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:19674039C>T	uc002wrl.2	+	13	1658	c.1461C>T	c.(1459-1461)ATC>ATT	p.I487I		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	487	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						CGCTGTGGATCGCAGCCTTCT	0.502													27	31					0	0	1	0	0
FOXA2	3170	broad.mit.edu	37	20	22563708	22563708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:22563708C>T	uc002wsn.2	-	3	344	c.154G>A	c.(154-156)GGC>AGC	p.G52S	FOXA2_uc002wsm.2_Missense_Mutation_p.G58S	NM_153675	NP_710141	Q9Y261	FOXA2_HUMAN	forkhead box A2 isoform 2	52	Transactivation domain 1 (By similarity).				cell differentiation in hindbrain|central nervous system myelin formation|chromatin modification|dorsal/ventral neural tube patterning|ectoderm formation|endocrine pancreas development|endoderm development|epithelial tube branching involved in lung morphogenesis|in utero embryonic development|lung epithelial cell differentiation|negative regulation of neuron differentiation|neuron fate specification|oligodendrocyte cell fate commitment|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of neuron differentiation|primitive streak formation|regulation of blood coagulation|regulation of sequence-specific DNA binding transcription factor activity|response to interleukin-6	cytoplasm|transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|kidney(1)|central_nervous_system(1)	4	Lung NSC(19;0.188)					GAGCCGCTGCCCATGGCGGCC	0.682													31	73					0	0	1	0	0
ENTPD6	955	broad.mit.edu	37	20	25188018	25188018	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:25188018A>C	uc002wuj.2	+	3	541	c.361A>C	c.(361-363)ACC>CCC	p.T121P	ENTPD6_uc010zsy.1_Missense_Mutation_p.T121P|ENTPD6_uc010gdj.1_Missense_Mutation_p.T93P|ENTPD6_uc010zsz.1_Intron|ENTPD6_uc002wum.2_Missense_Mutation_p.T104P|ENTPD6_uc010zta.1_Missense_Mutation_p.T121P|ENTPD6_uc002wun.2_Missense_Mutation_p.T121P|ENTPD6_uc002wuk.2_Missense_Mutation_p.T120P|ENTPD6_uc002wul.2_Missense_Mutation_p.T120P|ENTPD6_uc010ztb.1_Missense_Mutation_p.T93P|ENTPD6_uc010ztc.1_Missense_Mutation_p.T93P|ENTPD6_uc002wuo.2_Intron|ENTPD6_uc010ztd.1_5'Flank	NM_001247	NP_001238	O75354	ENTP6_HUMAN	ectonucleoside triphosphate diphosphohydrolase 6	121	Lumenal (Potential).					Golgi membrane|integral to membrane	nucleoside-diphosphatase activity				0						CTTCCAGTTCACCCGGCCCCC	0.587													7	21					0	0	1	0	0
DEFB118	117285	broad.mit.edu	37	20	29960810	29960810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:29960810C>T	uc002wvr.2	+	2	235	c.209C>T	c.(208-210)CCC>CTC	p.P70L		NM_054112	NP_473453	Q96PH6	DB118_HUMAN	beta-defensin 118 precursor	70					cell-matrix adhesion|defense response to bacterium|innate immune response|spermatogenesis	extracellular region				ovary(3)|pancreas(1)	4	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			GCGACATCTCCCACACCCTTG	0.423													44	35					0	0	1	0	0
C20orf114	92747	broad.mit.edu	37	20	31890731	31890731	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:31890731A>G	uc002wyw.1	+	11	1152	c.991A>G	c.(991-993)AAG>GAG	p.K331E	C20orf114_uc002wyx.1_RNA	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	331						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						GGCTGCAGATAAGCTGGGATC	0.368													31	30					0	0	1	0	0
CHD6	84181	broad.mit.edu	37	20	40126847	40126847	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:40126847G>A	uc002xka.1	-	7	1113	c.935C>T	c.(934-936)CCG>CTG	p.P312L	CHD6_uc002xkd.2_Missense_Mutation_p.P290L|CHD6_uc002xkc.2_Missense_Mutation_p.P347L	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	312	Chromo 1.				chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				CAAGTCGAACGGAGGTTCTCC	0.383													10	29					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41306689	41306689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:41306689C>T	uc002xkg.2	-	7	1154	c.970G>A	c.(970-972)GAA>AAA	p.E324K	PTPRT_uc010ggj.2_Missense_Mutation_p.E324K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	324	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TATTCCACTTCCTTCAGGATG	0.567													59	46					0	0	1	0	0
SLPI	6590	broad.mit.edu	37	20	43882291	43882291	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:43882291A>C	uc002xnm.1	-	2	191	c.169T>G	c.(169-171)TGT>GGT	p.C57G		NM_003064	NP_003055	P03973	SLPI_HUMAN	secretory leukocyte peptidase inhibitor	57	Trypsin inhibitory domain.|WAP 1.					extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TTCCCTGGACACTGCCAGTCA	0.502													37	57					0	0	1	0	0
PIGT	51604	broad.mit.edu	37	20	44054260	44054260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:44054260G>A	uc002xoh.1	+	12	1604	c.1531G>A	c.(1531-1533)GAG>AAG	p.E511K	PIGT_uc002xoj.1_Missense_Mutation_p.E444K|PIGT_uc002xok.1_Missense_Mutation_p.E476K|PIGT_uc010zwu.1_Missense_Mutation_p.E249K|PIGT_uc002xoi.1_RNA|PIGT_uc010zwv.1_Missense_Mutation_p.E249K|PIGT_uc010zww.1_Missense_Mutation_p.E455K|PIGT_uc010zwx.1_Missense_Mutation_p.E346K|PIGT_uc010zwy.1_Missense_Mutation_p.E409K|PIGT_uc010zwz.1_Missense_Mutation_p.E249K|PIGT_uc010zxa.1_Missense_Mutation_p.E349K|PIGT_uc002xol.1_Missense_Mutation_p.E300K|PIGT_uc010zxb.1_Missense_Mutation_p.E187K|PIGT_uc002xom.1_Missense_Mutation_p.E103K	NM_015937	NP_057021	Q969N2	PIGT_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	511	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			pancreas(1)	1		Myeloproliferative disorder(115;0.0122)				GCTCTACACGGAGCCGCTGCT	0.597													9	30					0	0	1	0	0
SPO11	23626	broad.mit.edu	37	20	55918423	55918423	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:55918423G>A	uc002xye.2	+	13	1191	c.1098G>A	c.(1096-1098)ATG>ATA	p.M366I	SPO11_uc002xyf.2_Missense_Mutation_p.M328I	NM_012444	NP_036576	Q9Y5K1	SPO11_HUMAN	meiotic recombination protein SPO11 isoform a	366					female gamete generation|reciprocal meiotic recombination	chromosome|nucleus	ATP binding|DNA binding|hydrolase activity			breast(2)|skin(1)	3	Lung NSC(12;0.0066)|all_lung(29;0.0188)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;1.73e-14)|Epithelial(14;9.02e-10)|all cancers(14;9.31e-09)			ACTCTAAAATGAAGGCAGAAA	0.308								Editing_and_processing_nucleases					26	45					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56137901	56137901	+	Missense_Mutation	SNP	G	A	A	rs11552146	byFrequency	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:56137901G>A	uc002xyn.3	+	4	719	c.556G>A	c.(556-558)GAT>AAT	p.D186N	PCK1_uc010zzm.1_Intron	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	186					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			AGCAGTGGGCGATGGGGAGTT	0.502													17	26					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56140647	56140647	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:56140647C>T	uc002xyn.3	+	10	1819	c.1656C>T	c.(1654-1656)CTC>CTT	p.L552L	PCK1_uc010zzm.1_Silent_p.L235L	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	552				KL -> NV (in Ref. 1; AAA60084).	gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			GCACCAAGCTCACGCCCATAG	0.542													18	41					0	0	1	0	0
NPBWR2	2832	broad.mit.edu	37	20	62737910	62737910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:62737910C>T	uc011abt.1	-	1	275	c.275G>A	c.(274-276)GGG>GAG	p.G92E		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	92	Helical; Name=2; (Potential).		G -> R (in a colorectal cancer sample; somatic mutation).			plasma membrane	opioid receptor activity|protein binding	p.G92R(1)		large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					CGTGAAGAGCCCGTCGGCGAC	0.627													22	8					0	0	1	0	0
MYT1	4661	broad.mit.edu	37	20	62839399	62839399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:62839399G>A	uc002yii.2	+	7	1214	c.850G>A	c.(850-852)GAA>AAA	p.E284K	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	284	Glu-rich.				cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					agaggaggaggaagaggaaga	0.134													10	11					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10951367	10951367	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:10951367G>A	uc002yip.1	-	10	713	c.345C>T	c.(343-345)TTC>TTT	p.F115F	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.F97F|TPTE_uc002yir.1_Silent_p.F77F|TPTE_uc010gkv.1_5'UTR	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	115					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGCTGTCAGTGAAAATTAGGT	0.308													41	72					0	0	1	0	0
KRTAP13-3	337960	broad.mit.edu	37	21	31797959	31797959	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:31797959G>A	uc002yob.1	-	1	272	c.272C>T	c.(271-273)TCT>TTT	p.S91F		NM_181622	NP_853653	Q3SY46	KR133_HUMAN	keratin associated protein 13-3	91	5 X 10 AA approximate repeats.					intermediate filament				ovary(1)|lung(1)	2						AGTCAGGCAAGAATTGCAGAG	0.572													37	25					0	0	1	0	0
KRTAP13-4	284827	broad.mit.edu	37	21	31802635	31802635	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:31802635C>T	uc011acw.1	+	1	42	c.42C>T	c.(40-42)TCC>TCT	p.S14S		NM_181600	NP_853631	Q3LI77	KR134_HUMAN	keratin associated protein 13-4	14						intermediate filament					0						CCTCCCGCTCCTTTGGGGGCT	0.542													50	85					0	0	1	0	0
SIM2	6493	broad.mit.edu	37	21	38098425	38098425	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:38098425C>T	uc002yvr.2	+	6	605	c.549C>T	c.(547-549)ATC>ATT	p.I183I	SIM2_uc002yvq.2_Silent_p.I183I	NM_005069	NP_005060	Q14190	SIM2_HUMAN	single-minded homolog 2 long isoform	183				IH -> RI (in Ref. 7; BAA07909).	cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1						CCCAGGTCATCCACTGCAGTG	0.577													51	67					0	0	1	0	0
ETS2	2114	broad.mit.edu	37	21	40184975	40184975	+	Missense_Mutation	SNP	C	T	T	rs66473060		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:40184975C>T	uc002yxg.2	+	3	317	c.121C>T	c.(121-123)CCT>TCT	p.P41S	ETS2_uc002yxf.2_Missense_Mutation_p.P181S	NM_005239	NP_005230	P15036	ETS2_HUMAN	v-ets erythroblastosis virus E26 oncogene	41					positive regulation of transcription, DNA-dependent|skeletal system development	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)|pancreas(1)	4		Prostate(19;6.33e-08)|all_epithelial(19;0.123)				TGCTGTTTTTCCTTCTCTAAA	0.398													38	86					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41427706	41427706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:41427706C>T	uc002yyq.1	-	29	5433	c.4981G>A	c.(4981-4983)GAC>AAC	p.D1661N	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1661	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CTGGGTATGTCGATGTGCATT	0.468													77	143					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41447102	41447102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:41447102C>T	uc002yyq.1	-	27	5202	c.4750G>A	c.(4750-4752)GAA>AAA	p.E1584K	DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1584	Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AGCCCTTCTTCGTTTTGGACA	0.527													28	25					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	42080652	42080652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:42080652G>A	uc002yyq.1	-	2	541	c.89C>T	c.(88-90)TCT>TTT	p.S30F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	30	Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CTCTTGCAGAGATGCATTGAC	0.527													102	74					0	0	1	0	0
C2CD2	25966	broad.mit.edu	37	21	43319197	43319197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:43319197C>T	uc002yzw.2	-	13	2077	c.1835G>A	c.(1834-1836)AGT>AAT	p.S612N	C2CD2_uc002yzs.2_Missense_Mutation_p.S81N|C2CD2_uc002yzt.2_Missense_Mutation_p.S228N|C2CD2_uc002yzu.2_Missense_Mutation_p.S444N|C2CD2_uc002yzv.2_Missense_Mutation_p.S457N	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	612						cytosol|extracellular region|nucleus				ovary(1)	1						CTCCAAGACACTCATGGAGCT	0.632													45	45					0	0	1	0	0
C2CD2	25966	broad.mit.edu	37	21	43319199	43319199	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:43319199C>A	uc002yzw.2	-	13	2075	c.1833G>T	c.(1831-1833)ATG>ATT	p.M611I	C2CD2_uc002yzs.2_Missense_Mutation_p.M80I|C2CD2_uc002yzt.2_Missense_Mutation_p.M227I|C2CD2_uc002yzu.2_Missense_Mutation_p.M443I|C2CD2_uc002yzv.2_Missense_Mutation_p.M456I	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	611						cytosol|extracellular region|nucleus				ovary(1)	1						CCAAGACACTCATGGAGCTCT	0.632													43	47					3.76604e-16	3.84019e-16	1	1	0
C2CD2	25966	broad.mit.edu	37	21	43332514	43332514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:43332514C>T	uc002yzw.2	-	7	1122	c.880G>A	c.(880-882)GAT>AAT	p.D294N	C2CD2_uc002yzu.2_Missense_Mutation_p.D126N|C2CD2_uc002yzv.2_Missense_Mutation_p.D139N|C2CD2_uc002yzx.1_Missense_Mutation_p.D139N	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	294	C2.					cytosol|extracellular region|nucleus				ovary(1)	1						TGAACAGGATCGTTCAGCTGC	0.438													9	6					0	0	1	0	0
RSPH1	89765	broad.mit.edu	37	21	43913174	43913174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:43913174G>A	uc002zbg.2	-	2	175	c.70C>T	c.(70-72)CGG>TGG	p.R24W	SLC37A1_uc002zbh.1_5'Flank	NM_080860	NP_543136	Q8WYR4	RSPH1_HUMAN	testis-specific gene A2	24	MORN 1.				meiosis	cytosol|nucleus				ovary(1)	1						GCCTCATTCCGACCCCCCTCA	0.403													66	146					0	0	1	0	0
AIRE	326	broad.mit.edu	37	21	45716284	45716284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:45716284G>A	uc002zei.2	+	13	1649	c.1522G>A	c.(1522-1524)GAG>AAG	p.E508K	AIRE_uc010gpq.2_RNA|AIRE_uc002zej.2_Missense_Mutation_p.E311K|AIRE_uc010gpr.2_Missense_Mutation_p.E311K	NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	508					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		TGCCAGTCACGAGCCCGCTCT	0.662									Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				29	71					0	0	1	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012310	46012310	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:46012310A>G	uc002zfm.2	-	1	77	c.56T>C	c.(55-57)GTC>GCC	p.V19A	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	19						keratin filament					0						AGGAAGGCAGACGCGGCTGCC	0.672													4	57					0	0	1	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020577	46020577	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:46020577T>C	uc002zfn.3	+	1	81	c.56T>C	c.(55-57)GTC>GCC	p.V19A	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	19						keratin filament					0						GGCAGCCGCGTCTGCCTTCCT	0.592													18	16					0	0	1	0	0
PTTG1IP	754	broad.mit.edu	37	21	46276172	46276172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr21:46276172G>A	uc002zgb.1	-	4	595	c.385C>T	c.(385-387)CCG>TCG	p.P129S	PTTG1IP_uc011afj.1_RNA|PTTG1IP_uc011afk.1_Intron	NM_004339	NP_004330	P53801	PTTG_HUMAN	pituitary tumor-transforming gene 1	129	Cytoplasmic (Potential).				protein import into nucleus	cytoplasm|integral to membrane|nucleus				ovary(1)	1				Colorectal(79;0.0659)		CTCCTGTCCGGCTTCCGGCTC	0.627													50	34					0	0	1	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072405	17072405	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr22:17072405T>G	uc002zlp.1	-	1	1296	c.1036A>C	c.(1036-1038)AAG>CAG	p.K346Q		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	346					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CTCTGGCACTTGCCTGGCCTC	0.557													127	14					0	0	1	0	0
XKR3	150165	broad.mit.edu	37	22	17288908	17288908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr22:17288908G>A	uc002zlv.2	-	2	154	c.56C>T	c.(55-57)TCG>TTG	p.S19L	XKR3_uc011agf.1_Missense_Mutation_p.S19L	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	19						integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				TTCTTCTTTCGAAGATGAAAC	0.428													92	6					0	0	1	0	0
ZNF74	7625	broad.mit.edu	37	22	20760987	20760987	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr22:20760987C>G	uc010gsm.2	+	6	1876	c.1664C>G	c.(1663-1665)TCG>TGG	p.S555W	ZNF74_uc002zsg.2_Missense_Mutation_p.S484W|ZNF74_uc002zsh.2_Missense_Mutation_p.S555W|ZNF74_uc002zsi.2_Missense_Mutation_p.S484W|ZNF74_uc010gsn.2_Missense_Mutation_p.S484W	NM_003426	NP_003417	Q16587	ZNF74_HUMAN	zinc finger protein 74	555					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|nucleus	DNA binding|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.0025)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)|all_lung(157;0.248)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			GGGGAGAAGTCGTTTAAGTGT	0.527													79	9					0	0	1	0	0
SCARF2	91179	broad.mit.edu	37	22	20781786	20781786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr22:20781786G>A	uc002zsj.1	-	10	1712	c.1607C>T	c.(1606-1608)CCC>CTC	p.P536L	SCARF2_uc002zsk.1_Missense_Mutation_p.P531L	NM_153334	NP_699165	Q96GP6	SREC2_HUMAN	scavenger receptor class F, member 2 isoform 1	531	Cytoplasmic (Potential).				cell adhesion	integral to membrane	protein binding|receptor activity			breast(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			CAGCCCTGAGGGTGGCTCCAG	0.622													71	3					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26181399	26181399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr22:26181399G>A	uc003abz.1	+	11	2567	c.2317G>A	c.(2317-2319)GAG>AAG	p.E773K	MYO18B_uc003aca.1_Missense_Mutation_p.E654K|MYO18B_uc010guy.1_Missense_Mutation_p.E654K|MYO18B_uc010guz.1_Missense_Mutation_p.E654K|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_Missense_Mutation_p.E286K	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	773	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TTCCAGGACGGAGCTGAACCT	0.612													21	2					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26422812	26422812	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr22:26422812G>A	uc003abz.1	+	43	7122	c.6872G>A	c.(6871-6873)AGG>AAG	p.R2291K	MYO18B_uc003aca.1_Missense_Mutation_p.R2172K|MYO18B_uc010guy.1_Missense_Mutation_p.R2173K|MYO18B_uc010guz.1_Missense_Mutation_p.R2171K|MYO18B_uc011aka.1_Missense_Mutation_p.R1445K|MYO18B_uc011akb.1_Missense_Mutation_p.R1804K|MYO18B_uc010gva.1_Missense_Mutation_p.R274K|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2291						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						ACACTAAGGAGGGGCAGGGCT	0.642													32	3					0	0	1	0	0
ASPHD2	57168	broad.mit.edu	37	22	26830121	26830121	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr22:26830121C>T	uc003acg.2	+	2	937	c.540C>T	c.(538-540)TCC>TCT	p.S180S		NM_020437	NP_065170	Q6ICH7	ASPH2_HUMAN	aspartate beta-hydroxylase domain containing 2	180	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity			ovary(1)	1						CCTATTTCTCCCGGGACGCAC	0.587													34	3					0	0	1	0	0
APOL4	80832	broad.mit.edu	37	22	36587483	36587483	+	Silent	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr22:36587483A>G	uc003aox.2	-	6	921	c.696T>C	c.(694-696)TTT>TTC	p.F232F	APOL4_uc003aow.2_Silent_p.F229F|APOL4_uc010gww.2_Silent_p.F74F	NM_145660	NP_663693	Q9BPW4	APOL4_HUMAN	apolipoprotein L4 isoform 2 precursor	232					lipid metabolic process|lipid transport|lipoprotein metabolic process	extracellular region	lipid binding				0						AATCAAGTGCAAAAGAAAGCA	0.478													54	5					0	0	1	0	0
PICK1	9463	broad.mit.edu	37	22	38463714	38463714	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr22:38463714G>T	uc003auq.2	+	5	676	c.286G>T	c.(286-288)GAG>TAG	p.E96*	PICK1_uc003aur.2_Nonsense_Mutation_p.E96*|PICK1_uc003aus.2_Nonsense_Mutation_p.E96*|PICK1_uc003aut.2_Nonsense_Mutation_p.E96*	NM_012407	NP_036539	Q9NRD5	PICK1_HUMAN	protein interacting with C kinase 1	96	PDZ.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|DNA methylation involved in embryo development|DNA methylation involved in gamete generation|monoamine transport|neuronal ion channel clustering|protein phosphorylation|receptor clustering|retrograde vesicle-mediated transport, Golgi to ER|synaptic transmission	cell junction|endocytic vesicle membrane|Golgi apparatus|perinuclear region of cytoplasm|presynaptic membrane	ATPase activity|metal ion binding|protein C-terminus binding|protein kinase C binding|receptor binding				0	Melanoma(58;0.045)					CTTCCAGGGGGAGGTGACCAT	0.592													52	4					1.56241e-48	1.60147e-48	1	1	0
ATF4	468	broad.mit.edu	37	22	39917600	39917600	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr22:39917600C>T	uc003axz.2	+	2	430	c.150C>T	c.(148-150)TCC>TCT	p.S50S	ATF4_uc011aol.1_5'UTR|ATF4_uc003aya.2_Silent_p.S50S	NM_182810	NP_877962	P18848	ATF4_HUMAN	activating transcription factor 4	50					cellular amino acid metabolic process|gluconeogenesis|positive regulation of transcription from RNA polymerase II promoter|response to endoplasmic reticulum stress|transcription from RNA polymerase II promoter	cytoplasm|plasma membrane	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Melanoma(58;0.04)					ATGGGTTCTCCAGCGACAAGG	0.577													63	6					0	0	1	0	0
ST13	6767	broad.mit.edu	37	22	41252455	41252455	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr22:41252455G>A	uc003aze.2	-	1	233	c.90C>T	c.(88-90)TTC>TTT	p.F30F	XPNPEP3_uc011aox.1_5'Flank|XPNPEP3_uc003azh.2_5'Flank|XPNPEP3_uc003azi.2_5'Flank|ST13_uc011aow.1_Silent_p.F30F|XPNPEP3_uc003azg.1_5'Flank|XPNPEP3_uc003azf.1_5'Flank	NM_003932	NP_003923	P50502	F10A1_HUMAN	heat shock 70kD protein binding protein	30							protein binding, bridging				0						ACTCCCTCAGGAAGCGCATTT	0.642													50	39					0	0	1	0	0
PHF21B	112885	broad.mit.edu	37	22	45309898	45309898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr22:45309898G>A	uc003bfn.2	-	5	786	c.635C>T	c.(634-636)CCC>CTC	p.P212L	PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron|PHF21B_uc011aqm.1_Intron	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	212							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		aggggtgaggggaagagagga	0.164													53	2					0	0	1	0	0
PHF21B	112885	broad.mit.edu	37	22	45312509	45312509	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr22:45312509A>G	uc003bfn.2	-	4	366	c.215T>C	c.(214-216)GTT>GCT	p.V72A	PHF21B_uc003bfm.2_5'UTR|PHF21B_uc011aqk.1_Missense_Mutation_p.V60A|PHF21B_uc011aql.1_Missense_Mutation_p.V72A|PHF21B_uc011aqm.1_Missense_Mutation_p.V60A	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	72							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		CTTTGGCCTAACCTGGGAAGA	0.627													74	4					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	2787242	2787242	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:2787242G>A	uc003bpc.2	+	5	440	c.219G>A	c.(217-219)ATG>ATA	p.M73I	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.M73I	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	73	Ig-like C2-type 1.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		ACACTGGTATGGATTTCCGCT	0.383													55	47					0	0	1	0	0
LRRN1	57633	broad.mit.edu	37	3	3886706	3886706	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:3886706G>A	uc003bpt.3	+	2	1142	c.381G>A	c.(379-381)GAG>GAA	p.E127E	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	127	LRR 3.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		TGCATTTGGAGGAAAATCAGA	0.418													15	27					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10452473	10452473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:10452473C>T	uc003bvt.2	-	3	665	c.226G>A	c.(226-228)GAA>AAA	p.E76K	ATP2B2_uc003bvv.2_Missense_Mutation_p.E76K|ATP2B2_uc003bvw.2_Missense_Mutation_p.E76K|ATP2B2_uc010hdp.2_Missense_Mutation_p.E76K|ATP2B2_uc010hdo.2_5'UTR	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	76	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TTTCTCTTTTCCAGGTCTGGA	0.547													123	134					0	0	1	0	0
FBLN2	2199	broad.mit.edu	37	3	13670698	13670698	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:13670698C>T	uc011avb.1	+	12	2732	c.2607C>T	c.(2605-2607)TGC>TGT	p.C869C	FBLN2_uc011auz.1_Silent_p.C895C|FBLN2_uc011ava.1_Silent_p.C916C|FBLN2_uc011avc.1_Silent_p.C916C	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	869	EGF-like 6; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			TGCACCGCTGCGGTGAGGGCC	0.647													14	33					0	0	1	0	0
PLCL2	23228	broad.mit.edu	37	3	17051295	17051295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:17051295C>T	uc011awc.1	+	5	538	c.433C>T	c.(433-435)CGC>TGC	p.R145C	PLCL2_uc010het.1_Missense_Mutation_p.R27C|PLCL2_uc011awd.1_Missense_Mutation_p.R27C	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	153	PH.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						CAAAAAGGTTCGCTCCAACTC	0.418													22	11					0	0	1	0	0
GLB1	2720	broad.mit.edu	37	3	33055774	33055774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:33055774G>A	uc003cfi.1	-	15	1625	c.1508C>T	c.(1507-1509)TCC>TTC	p.S503F	GLB1_uc003cfh.1_Missense_Mutation_p.S473F|GLB1_uc003cfj.1_Missense_Mutation_p.S372F|GLB1_uc011axk.1_Missense_Mutation_p.S551F	NM_000404	NP_000395	P16278	BGAL_HUMAN	galactosidase, beta 1 isoform a preproprotein	503					carbohydrate metabolic process	lysosome|perinuclear region of cytoplasm	beta-galactosidase activity|cation binding|protein binding			large_intestine(1)	1		Melanoma(143;0.104)				GAGGATATTGGAACTGAGAGT	0.542													6	25					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36896895	36896895	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:36896895G>A	uc003cgj.2	-	3	2838	c.2536C>T	c.(2536-2538)CAA>TAA	p.Q846*		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1396					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GTAAAGTCTTGAATCTCATCA	0.522													65	142					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38938438	38938438	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:38938438C>T	uc011ays.1	-	14	2500	c.2301G>A	c.(2299-2301)GGG>GGA	p.G767G	SCN11A_uc010hhn.1_5'Flank	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	767	II.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CGATCCATTCCCCGCAGAGGA	0.468													35	21					0	0	1	0	0
CCK	885	broad.mit.edu	37	3	42299711	42299711	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:42299711C>T	uc003clc.1	-	3	436	c.227G>A	c.(226-228)CGA>CAA	p.R76Q	CCK_uc003cld.1_Missense_Mutation_p.R76Q	NM_000729	NP_000720	P06307	CCKN_HUMAN	cholecystokinin preproprotein	76					axonogenesis|eating behavior|neuron migration		neuropeptide hormone activity			central_nervous_system(1)	1		Ovarian(412;0.0728)		KIRC - Kidney renal clear cell carcinoma(284;0.219)		GATGGACATTCGTCCAGAAGG	0.473													46	45					0	0	1	0	0
SNRK	54861	broad.mit.edu	37	3	43381975	43381975	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:43381975C>T	uc003cms.3	+	5	1260	c.928C>T	c.(928-930)CGA>TGA	p.R310*	SNRK_uc003cmt.3_Nonsense_Mutation_p.R310*|SNRK_uc010hik.2_Nonsense_Mutation_p.R310*|SNRK_uc011azr.1_Nonsense_Mutation_p.R104*	NM_017719	NP_060189	Q9NRH2	SNRK_HUMAN	SNF related kinase	310	UBA.				myeloid cell differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.0636)|Kidney(284;0.0792)		CATAGCGGATCGAGACGCCAT	0.483													17	32					0	0	1	0	0
ZNF502	91392	broad.mit.edu	37	3	44763572	44763572	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:44763572C>T	uc011baa.1	+	4	1518	c.1263C>T	c.(1261-1263)TGC>TGT	p.C421C	ZNF502_uc003cns.2_Silent_p.C421C|ZNF502_uc011bab.1_Silent_p.C421C|ZNF502_uc003cnt.2_Silent_p.C421C	NM_001134440	NP_001127912	Q8TBZ5	ZN502_HUMAN	zinc finger protein 502	421	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00855)|KIRC - Kidney renal clear cell carcinoma(197;0.0471)|Kidney(197;0.0589)		AGAGCATTTGCCTTATTCGGC	0.438													16	20					0	0	1	0	0
ZDHHC3	51304	broad.mit.edu	37	3	44986667	44986667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:44986667G>A	uc003cod.2	-	3	698	c.424C>T	c.(424-426)CAC>TAC	p.H142Y	ZDHHC3_uc003cog.2_Missense_Mutation_p.H142Y|ZDHHC3_uc011bad.1_Missense_Mutation_p.H142Y	NM_016598	NP_057682	Q9NYG2	ZDHC3_HUMAN	zinc finger, DHHC-type containing 3 isoform 2	142	Cytoplasmic (Potential).|DHHC-type.					Golgi membrane|integral to membrane	zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00943)|KIRC - Kidney renal clear cell carcinoma(197;0.053)|Kidney(197;0.0665)		TACCTGCAGTGGTGGGCTCGG	0.572													70	51					0	0	1	0	0
CCR9	10803	broad.mit.edu	37	3	45943258	45943258	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:45943258G>A	uc003coz.1	+	3	1135	c.978G>A	c.(976-978)CGG>CGA	p.R326R	LZTFL1_uc003coy.1_Intron|LZTFL1_uc011bak.1_Intron|CCR9_uc010hiv.1_Silent_p.R314R|CCR9_uc003cpa.1_Silent_p.R314R	NM_031200	NP_112477	P51686	CCR9_HUMAN	chemokine (C-C motif) receptor 9 isoform A	326	Cytoplasmic (Potential).				cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane				ovary(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00118)|KIRC - Kidney renal clear cell carcinoma(197;0.0182)|Kidney(197;0.0214)		GATTCCGCCGGGATCTCGTGA	0.512													27	36					0	0	1	0	0
CCR3	1232	broad.mit.edu	37	3	46307396	46307396	+	Silent	SNP	C	T	T	rs76939117		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:46307396C>T	uc003cpg.1	+	4	1290	c.747C>T	c.(745-747)TTC>TTT	p.F249F	CCR3_uc003cpi.1_Silent_p.F249F|CCR3_uc003cpj.1_Silent_p.F249F|CCR3_uc003cpk.1_Silent_p.F270F|CCR3_uc010hjb.1_Silent_p.F267F|CCR3_uc003cpl.1_Silent_p.F282F	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	249	Helical; Name=6; (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		CGGTGTTTTTCATTTTCTGGA	0.458													46	30					0	0	1	0	0
MYL3	4634	broad.mit.edu	37	3	46901047	46901047	+	Silent	SNP	G	A	A	rs112992334		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:46901047G>A	uc003cql.1	-	4	492	c.399C>T	c.(397-399)TTC>TTT	p.F133F		NM_000258	NP_000249	P08590	MYL3_HUMAN	slow skeletal ventricular myosin alkali light	133	EF-hand 2.				cardiac muscle contraction|muscle filament sliding|positive regulation of ATPase activity|regulation of striated muscle contraction|regulation of the force of heart contraction|ventricular cardiac muscle tissue morphogenesis	A band|cytosol|I band|muscle myosin complex	actin monomer binding|calcium ion binding|myosin II heavy chain binding|structural constituent of muscle				0				BRCA - Breast invasive adenocarcinoma(193;0.00116)|KIRC - Kidney renal clear cell carcinoma(197;0.00557)|Kidney(197;0.0063)		GCCCCTCCACGAAGTCCTCAT	0.567													56	90					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48699262	48699262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:48699262G>A	uc003cul.2	-	1	1087	c.806C>T	c.(805-807)CCC>CTC	p.P269L	CELSR3_uc003cuf.1_Missense_Mutation_p.P339L	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	269	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CGCCGGCTCGGGAGCTGTCCG	0.741													28	44					0	0	1	0	0
NCKIPSD	51517	broad.mit.edu	37	3	48719488	48719488	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:48719488G>A	uc003cun.2	-	4	682	c.588C>T	c.(586-588)GCC>GCT	p.A196A	NCKIPSD_uc003cum.2_Silent_p.A189A|NCKIPSD_uc010hkh.1_Silent_p.A196A	NM_016453	NP_057537	Q9NZQ3	SPN90_HUMAN	NCK interacting protein with SH3 domain isoform	196	Pro-rich.				cytoskeleton organization|NLS-bearing substrate import into nucleus|signal transduction	intermediate filament|nucleus	cytoskeletal protein binding|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CACTCCCAGAGGCCATCAGGG	0.612													37	20					0	0	1	0	0
VPRBP	9730	broad.mit.edu	37	3	51456309	51456309	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:51456309G>A	uc003dbe.1	-	15	3426	c.3258C>T	c.(3256-3258)TTC>TTT	p.F1086F	VPRBP_uc003dbf.1_Silent_p.F362F	NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	HIV-1 Vpr binding protein	1086					interspecies interaction between organisms	cytoplasm|nucleus	protein binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)		TGGCTTCCCGGAACACTGAAA	0.483													8	16					0	0	1	0	0
TLR9	54106	broad.mit.edu	37	3	52256482	52256482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:52256482C>T	uc003dda.1	-	2	2484	c.1850G>A	c.(1849-1851)GGA>GAA	p.G617E	TLR9_uc003ddb.2_Missense_Mutation_p.G714E	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	617	LRR 20.|Extracellular (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	ATAGAGGTCTCCCTCGGCCCA	0.607													16	34					0	0	1	0	0
LRTM1	57408	broad.mit.edu	37	3	54952603	54952603	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:54952603G>A	uc003dhl.2	-	3	1055	c.921C>T	c.(919-921)GCC>GCT	p.A307A	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	307	Helical; (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		AGCCATAGATGGCAGCTGCCA	0.542													79	49					0	0	1	0	0
APPL1	26060	broad.mit.edu	37	3	57294155	57294155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:57294155C>T	uc003dio.2	+	18	1816	c.1669C>T	c.(1669-1671)CCA>TCA	p.P557S	APPL1_uc010hnb.2_Missense_Mutation_p.P557S|APPL1_uc011bey.1_Missense_Mutation_p.P540S	NM_012096	NP_036228	Q9UKG1	DP13A_HUMAN	adaptor protein, phosphotyrosine interaction, PH	557	PID.				apoptosis|cell cycle|cell proliferation|insulin receptor signaling pathway|regulation of apoptosis|regulation of establishment of protein localization in plasma membrane|regulation of glucose import	cytosol|early endosome membrane|microsome|nucleus|vesicle membrane	protein kinase B binding			breast(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0124)|Kidney(284;0.0144)		GTTAATTGATCCACAGACACA	0.294													7	13					0	0	1	0	0
APPL1	26060	broad.mit.edu	37	3	57302486	57302486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:57302486G>A	uc003dio.2	+	21	2101	c.1954G>A	c.(1954-1956)GAA>AAA	p.E652K	APPL1_uc011bey.1_Missense_Mutation_p.E635K|ASB14_uc003dip.1_3'UTR|ASB14_uc003diq.2_3'UTR	NM_012096	NP_036228	Q9UKG1	DP13A_HUMAN	adaptor protein, phosphotyrosine interaction, PH	652	PID.|Potential.				apoptosis|cell cycle|cell proliferation|insulin receptor signaling pathway|regulation of apoptosis|regulation of establishment of protein localization in plasma membrane|regulation of glucose import	cytosol|early endosome membrane|microsome|nucleus|vesicle membrane	protein kinase B binding			breast(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0124)|Kidney(284;0.0144)		gcaacagaaagaactcaataa	0.209													6	7					0	0	1	0	0
PDHB	5162	broad.mit.edu	37	3	58417666	58417666	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:58417666C>A	uc003dkf.3	-	3	171	c.142G>T	c.(142-144)GAA>TAA	p.E48*	PDHB_uc003dke.3_Nonsense_Mutation_p.E6*|PDHB_uc003dkg.3_Nonsense_Mutation_p.E30*|PDHB_uc010hnl.2_Nonsense_Mutation_p.E30*|PDHB_uc011bff.1_Nonsense_Mutation_p.E48*	NM_000925	NP_000916	P11177	ODPB_HUMAN	pyruvate dehydrogenase (lipoamide) beta	48					glycolysis|regulation of acetyl-CoA biosynthetic process from pyruvate|tricarboxylic acid cycle	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(55;0.000179)|Kidney(10;0.00231)|KIRC - Kidney renal clear cell carcinoma(10;0.00258)|OV - Ovarian serous cystadenocarcinoma(275;0.187)	NADH(DB00157)|Pyruvic acid(DB00119)	TCATCTCTTTCCAGCTCCTCA	0.388													23	22					3.28513e-13	3.33598e-13	1	1	0
SYNPR	132204	broad.mit.edu	37	3	63594956	63594956	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:63594956C>T	uc003dlq.2	+	4	873	c.504C>T	c.(502-504)ATC>ATT	p.I168I	SYNPR_uc003dlp.2_Silent_p.I188I|SYNPR_uc011bfk.1_RNA|SYNPR_uc011bfl.1_RNA|SYNPR_uc010hnt.2_Silent_p.I177I|SYNPR_uc011bfm.1_RNA	NM_144642	NP_653243	Q8TBG9	SYNPR_HUMAN	synaptoporin isoform 2	168	MARVEL.|Vesicular (Potential).					cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	transporter activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000918)|KIRC - Kidney renal clear cell carcinoma(15;0.0658)|Kidney(15;0.0904)		GCATGGCTATCCACAGCCCTG	0.398													6	8					0	0	1	0	0
ATXN7	6314	broad.mit.edu	37	3	63973881	63973881	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:63973881G>A	uc003dlw.3	+	9	1795	c.1242G>A	c.(1240-1242)CCG>CCA	p.P414P	ATXN7_uc003dlv.2_Silent_p.P414P|ATXN7_uc010hnv.2_Silent_p.P414P|ATXN7_uc011bfn.1_Silent_p.P269P	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	414	Pro-rich.				cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		TCAGGGACCCGCATCCCGCCC	0.512													5	221					0	0	1	0	0
ROBO1	6091	broad.mit.edu	37	3	78656104	78656104	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:78656104A>T	uc003dqe.2	-	29	4731	c.4523T>A	c.(4522-4524)GTG>GAG	p.V1508E	ROBO1_uc003dqb.2_Missense_Mutation_p.V1469E|ROBO1_uc003dqc.2_Missense_Mutation_p.V1408E|ROBO1_uc003dqd.2_Missense_Mutation_p.V1463E|ROBO1_uc010hoh.2_Missense_Mutation_p.V700E|ROBO1_uc011bgl.1_Missense_Mutation_p.V1080E	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1508	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		GAGTTTTGGCACCACTACAGG	0.473													92	76					0	0	1	0	0
HTR1F	3355	broad.mit.edu	37	3	88040668	88040668	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:88040668G>A	uc003dqr.2	+	2	927	c.769G>A	c.(769-771)GAC>AAC	p.D257N		NM_000866	NP_000857	P30939	5HT1F_HUMAN	5-hydroxytryptamine (serotonin) receptor 1F	257	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	serotonin binding|serotonin receptor activity			ovary(3)	3	all_cancers(8;0.147)	Lung NSC(201;0.0283)		LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00664)	Eletriptan(DB00216)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Zolmitriptan(DB00315)	CCCATCAACAGACTTTGATAA	0.408													27	20					0	0	1	0	0
GABRR3	200959	broad.mit.edu	37	3	97731241	97731241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:97731241C>T	uc011bgr.1	-	4	477	c.477G>A	c.(475-477)ATG>ATA	p.M159I		NM_001105580	NP_001099050	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 3	159	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0						TGATATTCTCCATAGTTGTAT	0.443													25	23					0	0	1	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806258	97806258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:97806258C>T	uc011bgs.1	+	1	242	c.242C>T	c.(241-243)CCT>CTT	p.P81L		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	81	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TCTATAACCCCTAGGATGCTG	0.418													52	122					0	0	1	0	0
OR5H2	79310	broad.mit.edu	37	3	98001844	98001844	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:98001844T>G	uc003dsj.1	+	1	113	c.113T>G	c.(112-114)GTG>GGG	p.V38G		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GTGTTCTTGGTGATCTATCTC	0.423													142	125					0	0	1	0	0
LNP1	348801	broad.mit.edu	37	3	100148714	100148714	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:100148714C>T	uc003dtx.3	+	2	1421	c.141C>T	c.(139-141)ACC>ACT	p.T47T	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	47											0						ACAGGAAAACCTCCCTGCCCT	0.547													37	95					0	0	1	0	0
CCDC54	84692	broad.mit.edu	37	3	107096720	107096720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:107096720G>A	uc003dwi.1	+	1	533	c.286G>A	c.(286-288)GAA>AAA	p.E96K		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	96	Potential.										0						AAAAGTCCAGGAAAAGACTGA	0.368													24	15					0	0	1	0	0
BBX	56987	broad.mit.edu	37	3	107524289	107524289	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:107524289C>T	uc010hpr.2	+	18	3138	c.2811C>T	c.(2809-2811)TCC>TCT	p.S937S	BBX_uc003dwk.3_Silent_p.S907S|BBX_uc003dwl.3_Missense_Mutation_p.P601L|BBX_uc003dwm.3_Silent_p.S907S|BBX_uc003dwo.3_Missense_Mutation_p.P254L	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	937					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			TACTTATTTCCTGCGCTGACC	0.473													29	59					0	0	1	0	0
CD96	10225	broad.mit.edu	37	3	111263903	111263903	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:111263903A>T	uc003dxw.2	+	2	242	c.72A>T	c.(70-72)GAA>GAT	p.E24D	CD96_uc003dxv.2_Missense_Mutation_p.E24D|CD96_uc003dxx.2_Missense_Mutation_p.E24D|CD96_uc010hpy.1_Missense_Mutation_p.E24D	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	24	Extracellular (Potential).				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						GAGTTTGGGAAAAAACAGTCA	0.398									Opitz_Trigonocephaly_syndrome				28	70					0	0	1	0	0
SLC9A10	285335	broad.mit.edu	37	3	111958734	111958734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:111958734C>T	uc003dyu.2	-	12	1621	c.1399G>A	c.(1399-1401)GAT>AAT	p.D467N	SLC9A10_uc011bhu.1_5'UTR|SLC9A10_uc010hqc.2_Missense_Mutation_p.D419N	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	467					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						ATGTTCCAATCAGCATTAGCA	0.333													9	16					0	0	1	0	0
ATP6V1A	523	broad.mit.edu	37	3	113505224	113505224	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:113505224T>C	uc003eao.2	+	6	776	c.710T>C	c.(709-711)CTT>CCT	p.L237P	ATP6V1A_uc011bik.1_Missense_Mutation_p.L204P	NM_001690	NP_001681	P38606	VATA_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit A	237					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|integral to plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			ovary(2)|skin(1)	3						CTTGATGCCCTTTTTCCGTAA	0.423													3	158					0	0	1	0	0
TIGIT	201633	broad.mit.edu	37	3	114014474	114014474	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:114014474C>T	uc003ebg.1	+	2	178	c.144C>T	c.(142-144)TCC>TCT	p.S48S		NM_173799	NP_776160	Q495A1	TIGIT_HUMAN	T cell immunoreceptor with Ig and ITIM domains	48	Extracellular (Potential).|Ig-like V-type.				negative regulation of interleukin-12 production|negative regulation of T cell activation|positive regulation of interleukin-10 production	cell surface|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)	1						GTCACCTCTCCTCCACCACGG	0.517													61	95					0	0	1	0	0
C3orf15	89876	broad.mit.edu	37	3	119459488	119459488	+	Silent	SNP	C	T	T	rs141278377		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:119459488C>T	uc003ede.3	+	13	1703	c.1626C>T	c.(1624-1626)GCC>GCT	p.A542A	C3orf15_uc010hqy.1_Silent_p.A542A|C3orf15_uc010hqz.2_Silent_p.A480A|C3orf15_uc011bjd.1_Silent_p.A416A|C3orf15_uc011bje.1_Silent_p.A522A|C3orf15_uc010hra.1_Silent_p.A303A	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	378	Potential.					mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		TGAAAAAAGCCGAGAAGCAAG	0.438													21	28					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	120673881	120673881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:120673881G>A	uc003eec.3	+	3	424	c.284G>A	c.(283-285)CGA>CAA	p.R95Q	STXBP5L_uc011bji.1_Missense_Mutation_p.R95Q	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	95	WD 1.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GGTGCTATACGAATGTATCCT	0.358													28	21					0	0	1	0	0
PARP14	54625	broad.mit.edu	37	3	122399901	122399901	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:122399901C>T	uc003efq.3	+	1	230	c.171C>T	c.(169-171)TTC>TTT	p.F57F		NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	57					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		TCCTGGTGTTCTTCTACCCGG	0.672													17	40					0	0	1	0	0
SEMA5B	54437	broad.mit.edu	37	3	122630878	122630878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:122630878C>T	uc003efz.1	-	20	3239	c.2935G>A	c.(2935-2937)GAC>AAC	p.D979N	SEMA5B_uc011bju.1_Missense_Mutation_p.D885N|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.D979N|SEMA5B_uc003efy.1_5'UTR	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	979	Extracellular (Potential).|TSP type-1 5.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GCTCCGTCGTCAGTGCACTTA	0.652													11	26					0	0	1	0	0
SLC41A3	54946	broad.mit.edu	37	3	125727714	125727714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:125727714G>A	uc003eij.2	-	10	1341	c.1115C>T	c.(1114-1116)TCC>TTC	p.S372F	SLC41A3_uc003eii.2_Missense_Mutation_p.S346F|SLC41A3_uc003eil.2_Missense_Mutation_p.S372F|SLC41A3_uc003eik.2_Missense_Mutation_p.S336F|SLC41A3_uc011bkh.1_Missense_Mutation_p.S255F	NM_001008485	NP_001008485	Q96GZ6	S41A3_HUMAN	solute carrier family 41, member 3 isoform 1	372						integral to membrane|plasma membrane	cation transmembrane transporter activity				0				GBM - Glioblastoma multiforme(114;0.167)		AGCTGACATGGAATTGATTTC	0.498													29	48					0	0	1	0	0
PLXNA1	5361	broad.mit.edu	37	3	126741134	126741134	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:126741134C>T	uc003ejg.2	+	21	4180	c.4176C>T	c.(4174-4176)CTC>CTT	p.L1392L		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1415	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		TTTCCGACCTCATCGAGAAGA	0.652													19	19					0	0	1	0	0
MCM2	4171	broad.mit.edu	37	3	127335762	127335762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:127335762C>T	uc003ejp.2	+	10	1631	c.1574C>T	c.(1573-1575)CCT>CTT	p.P525L	MCM2_uc011bkm.1_Missense_Mutation_p.P395L|MCM2_uc010hsl.2_RNA|MCM2_uc011bkn.1_Missense_Mutation_p.P478L	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	525	MCM.|ATP (Potential).				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						TGCGGAGACCCTGGCACAGCG	0.597													52	91					0	0	1	0	0
CEP63	80254	broad.mit.edu	37	3	134226076	134226076	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:134226076G>C	uc003eqo.1	+	4	619	c.170G>C	c.(169-171)CGT>CCT	p.R57P	CEP63_uc003eql.1_Missense_Mutation_p.R57P|CEP63_uc003eqm.2_Missense_Mutation_p.R57P|CEP63_uc003eqn.1_Missense_Mutation_p.R57P	NM_025180	NP_079456	Q96MT8	CEP63_HUMAN	centrosomal protein 63 isoform a	57	Potential.				cell division|DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitosis|signal transduction in response to DNA damage|spindle assembly	centrosome|cytosol|spindle pole	protein binding			ovary(1)	1						TTGAAAATCCGTGAACAGGAA	0.368													20	37					0	0	1	0	0
A4GNT	51146	broad.mit.edu	37	3	137843430	137843430	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:137843430C>T	uc003ers.2	-	3	901	c.699G>A	c.(697-699)AGG>AGA	p.R233R		NM_016161	NP_057245	Q9UNA3	A4GCT_HUMAN	alpha-1,4-N-acetylglucosaminyltransferase	233	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	acetylglucosaminyltransferase activity|galactosyltransferase activity			central_nervous_system(1)	1						TACACCATACCCTCAACATCC	0.463													214	402					0	0	1	0	0
SR140	23350	broad.mit.edu	37	3	142741865	142741865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:142741865C>T	uc003evh.1	+	12	1288	c.1189C>T	c.(1189-1191)CCT>TCT	p.P397S	SR140_uc003evi.1_Silent_p.L2L|SR140_uc011bnj.1_Missense_Mutation_p.P397S|SR140_uc003evj.1_RNA|SR140_uc003evk.1_Missense_Mutation_p.P396S|SR140_uc003evl.1_5'Flank	NM_001080415	NP_001073884	O15042	SR140_HUMAN	U2-associated SR140 protein	397	Pro-rich.				RNA processing	nucleus	nucleotide binding|RNA binding				0						CCCTAATGCTCCTATGTTACC	0.423													5	8					0	0	1	0	0
AADAC	13	broad.mit.edu	37	3	151545640	151545640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:151545640G>A	uc003eze.2	+	5	970	c.880G>A	c.(880-882)GGA>AGA	p.G294R		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	294	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			GTTTATAAAAGGACATGTTTA	0.413													28	32					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155199026	155199026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:155199026G>A	uc011bok.1	-	23	5090	c.4813C>T	c.(4813-4815)CCA>TCA	p.P1605S	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.P1567S	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1605					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CTGGGGTTTGGAACTTTCTGC	0.547													67	61					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155314037	155314037	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:155314037C>T	uc011bok.1	-	2	451	c.174G>A	c.(172-174)AAG>AAA	p.K58K	PLCH1_uc011boj.1_Silent_p.K58K|PLCH1_uc011bol.1_Silent_p.K40K	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	58	PH.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CCTTCTCACTCTTCCTAGAGG	0.483													121	97					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164737452	164737452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:164737452C>T	uc003fei.2	-	28	3423	c.3361G>A	c.(3361-3363)GCA>ACA	p.A1121T		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1121	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CGCTTAAATGCTGTATGTTCC	0.438										HNSCC(35;0.089)			43	32					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164767590	164767590	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:164767590G>A	uc003fei.2	-	14	1648	c.1586C>T	c.(1585-1587)CCG>CTG	p.P529L		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	529	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	AGGAGTAAACGGTGGATAATT	0.279										HNSCC(35;0.089)			26	25					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164786616	164786616	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:164786616A>G	uc003fei.2	-	5	439	c.377T>C	c.(376-378)GTT>GCT	p.V126A		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	126	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TTTGGCTTCAACTCCTTAAAG	0.318										HNSCC(35;0.089)			25	42					0	0	1	0	0
SERPINI2	5276	broad.mit.edu	37	3	167185017	167185017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:167185017C>T	uc003fer.1	-	2	362	c.304G>A	c.(304-306)GAA>AAA	p.E102K	SERPINI2_uc003fes.1_Missense_Mutation_p.E112K|SERPINI2_uc003fet.1_Missense_Mutation_p.E102K	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	102					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						AATGTAAATTCTTGTTTTTTC	0.328													20	34					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167245788	167245788	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:167245788G>A	uc003fev.1	-	11	1674	c.1368C>T	c.(1366-1368)TCC>TCT	p.S456S	WDR49_uc003feu.1_Silent_p.S281S|WDR49_uc011bpd.1_Intron|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	456	WD 7.									large_intestine(1)|ovary(1)|skin(1)	3						TGTTCTTACTGGAGTTAAGAC	0.373													17	43					0	0	1	0	0
ACTL6A	86	broad.mit.edu	37	3	179292229	179292229	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:179292229C>T	uc003fjw.2	+	5	623	c.450C>T	c.(448-450)TTC>TTT	p.F150F	ACTL6A_uc003fjx.2_Silent_p.F108F|ACTL6A_uc003fjy.2_Silent_p.F108F	NM_004301	NP_004292	O96019	ACL6A_HUMAN	actin-like 6A isoform 1	150					chromatin remodeling|DNA recombination|DNA repair|histone H2A acetylation|histone H4 acetylation|nervous system development|regulation of growth|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	Ino80 complex|npBAF complex|NuA4 histone acetyltransferase complex|plasma membrane|SWI/SNF complex	ATP binding|chromatin binding			ovary(1)	1	all_cancers(143;3.94e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.98e-26)|GBM - Glioblastoma multiforme(14;0.0169)			CTGCCTTCTTCCTTTGCAAAA	0.388													90	80					0	0	1	0	0
HTR3D	200909	broad.mit.edu	37	3	183756191	183756191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:183756191C>T	uc011bqv.1	+	7	914	c.914C>T	c.(913-915)CCT>CTT	p.P305L	HTR3D_uc003fmj.2_Intron|HTR3D_uc011bqu.1_Intron|HTR3D_uc010hxp.2_Intron	NM_001163646	NP_001157118	Q70Z44	5HT3D_HUMAN	5-hydroxytryptamine receptor 3 subunit D isoform	305	Extracellular (Potential).					integral to membrane|plasma membrane	extracellular ligand-gated ion channel activity|receptor activity				0	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;6.23e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			ACCCCCTTGCCTGCAGGTGTC	0.582													32	34					0	0	1	0	0
HTR3C	170572	broad.mit.edu	37	3	183777764	183777764	+	Silent	SNP	G	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:183777764G>T	uc003fmk.2	+	8	1108	c.1074G>T	c.(1072-1074)GGG>GGT	p.G358G		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	358	Cytoplasmic (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			CCAGCCCAGGGAGATGCTGTC	0.632													18	27					1.33834e-09	1.35208e-09	1	1	0
PSMD2	5708	broad.mit.edu	37	3	184021162	184021162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:184021162C>T	uc003fnn.1	+	9	1157	c.1124C>T	c.(1123-1125)TCT>TTT	p.S375F	PSMD2_uc011brj.1_Missense_Mutation_p.S216F|PSMD2_uc011brk.1_Missense_Mutation_p.S245F	NM_002808	NP_002799	Q13200	PSMD2_HUMAN	proteasome 26S non-ATPase subunit 2	375					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding				0	all_cancers(143;1.54e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Bortezomib(DB00188)	CTGGCCTCCTCTTTTGTGAAT	0.488													55	53					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189611995	189611995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:189611995G>A	uc003fry.2	+	14	1836	c.1747G>A	c.(1747-1749)GAT>AAT	p.D583N	TP63_uc003frz.2_Silent_p.R551R|TP63_uc010hzc.1_Missense_Mutation_p.R503K|TP63_uc003fsc.2_Missense_Mutation_p.D489N|TP63_uc003fsd.2_Silent_p.R457R|TP63_uc010hzd.1_Missense_Mutation_p.D404N	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	583	SAM.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		TGTTGCACAGGATCTGGCAAG	0.493									Hay-Wells_syndrome	HNSCC(45;0.13)			20	30					0	0	1	0	0
FGF12	2257	broad.mit.edu	37	3	191888302	191888302	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:191888302C>T	uc003fsx.2	-	4	1384	c.558G>A	c.(556-558)GGG>GGA	p.G186G	FGF12_uc003fsy.2_Silent_p.G124G	NM_021032	NP_066360	P61328	FGF12_HUMAN	fibroblast growth factor 12 isoform 1	186					cell-cell signaling|heart development|JNK cascade|nervous system development|signal transduction	extracellular space|nucleus	growth factor activity|heparin binding			ovary(1)|skin(1)|lung(1)|pancreas(1)	4	all_cancers(143;1.72e-08)|Ovarian(172;0.0634)|Breast(254;0.247)	Lung NSC(153;0.21)	LUSC - Lung squamous cell carcinoma(58;5.45e-06)|Lung(62;6.17e-06)	GBM - Glioblastoma multiforme(46;0.00032)		TCACTCTGTTCCCCTTCATAA	0.423													109	74					0	0	1	0	0
ATP13A4	84239	broad.mit.edu	37	3	193120603	193120603	+	Silent	SNP	G	A	A	rs117452828	by1000genomes	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:193120603G>A	uc003ftd.2	-	30	3537	c.3429C>T	c.(3427-3429)TTC>TTT	p.F1143F	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	1143	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		ACTGATAGCCGAAACATCTTT	0.443													12	38					0	0	1	0	0
ATP13A4	84239	broad.mit.edu	37	3	193180586	193180586	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:193180586C>T	uc003ftd.2	-	13	1596	c.1488G>A	c.(1486-1488)TTG>TTA	p.L496L	ATP13A4_uc003fte.1_Silent_p.L496L|ATP13A4_uc011bsr.1_5'UTR|ATP13A4_uc010hzi.2_RNA|ATP13A4_uc003ftf.3_Silent_p.L202L	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	496	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		CCCAGAGGTCCAAGCCGTCCC	0.368													18	51					0	0	1	0	0
GP5	2814	broad.mit.edu	37	3	194118701	194118701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:194118701C>T	uc003ftv.1	-	2	342	c.311G>A	c.(310-312)AGG>AAG	p.R104K		NM_004488	NP_004479	P40197	GPV_HUMAN	glycoprotein V (platelet) precursor	104	Extracellular (Potential).|LRR 2.				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane				skin(2)|breast(1)	3	all_cancers(143;6.64e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;7.38e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.06e-05)		GCGCGACAGCCTCAGGGTTTT	0.557													37	82					0	0	1	0	0
MFI2	4241	broad.mit.edu	37	3	196733596	196733596	+	Missense_Mutation	SNP	C	T	T	rs148616625	byFrequency	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:196733596C>T	uc003fxk.3	-	14	1875	c.1762G>A	c.(1762-1764)GAG>AAG	p.E588K		NM_005929	NP_005920	P08582	TRFM_HUMAN	melanoma-associated antigen p97 isoform 1	588	Transferrin-like 2.				cellular iron ion homeostasis|iron ion transport	anchored to membrane|extracellular region|integral to plasma membrane	ferric iron binding|protein binding				0	all_cancers(143;3.95e-09)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.55e-24)|all cancers(36;2.87e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00536)		GCCCAGGGCTCGGAATTGTGG	0.607													14	11					0	0	1	0	0
LOC220729	220729	broad.mit.edu	37	3	197348739	197348739	+	RNA	SNP	G	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:197348739G>C	uc011bug.1	-	4		c.352C>G			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						TAATTTTCTAGCTGTGAAAGA	0.398													3	60					0	0	1	0	0
SPON2	10417	broad.mit.edu	37	4	1165156	1165156	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:1165156C>T	uc003gcn.3	-	2	366	c.339G>A	c.(337-339)GCG>GCA	p.A113A	SPON2_uc003gco.3_Silent_p.A113A|SPON2_uc010ibr.2_Silent_p.A113A|SPON2_uc003gcm.1_Silent_p.A31A	NM_012445	NP_036577	Q9BUD6	SPON2_HUMAN	spondin 2, extracellular matrix protein	113	Spondin.				axon guidance|cell adhesion|innate immune response	proteinaceous extracellular matrix	metal ion binding			central_nervous_system(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.00805)	UCEC - Uterine corpus endometrioid carcinoma (64;0.139)|Colorectal(103;0.19)		GCGCCTCCCCCGCCGCCTCGA	0.692													30	17					0	0	1	0	0
DOK7	285489	broad.mit.edu	37	4	3475241	3475242	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:3475241_3475242CC>TT	uc003ghd.2	+	3	279_280	c.209_210CC>TT	c.(208-210)CCC>CTT	p.P70L	DOK7_uc003ghe.2_5'UTR	NM_173660	NP_775931	Q18PE1	DOK7_HUMAN	downstream of tyrosine kinase 7 isoform 1	70	PH.				positive regulation of protein tyrosine kinase activity	cell junction|synapse	insulin receptor binding|protein kinase binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		CCCGGCCTGCCCTACGAGGGCT	0.644													10	19					0	0	1	0	0
TMEM128	85013	broad.mit.edu	37	4	4248017	4248017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:4248017G>A	uc003ghr.1	-	2	181	c.151C>T	c.(151-153)CAT>TAT	p.H51Y	TMEM128_uc003ghq.1_Missense_Mutation_p.H27Y|TMEM128_uc003ghs.2_Missense_Mutation_p.H51Y|TMEM128_uc011bvv.1_Missense_Mutation_p.H51Y|TMEM128_uc011bvw.1_Missense_Mutation_p.H51Y	NM_032927	NP_116316	Q5BJH2	TM128_HUMAN	transmembrane protein 128	51	Helical; (Potential).					integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (64;0.166)		AATCCAGAATGGATATTAAGT	0.358													27	28					0	0	1	0	0
TBC1D14	57533	broad.mit.edu	37	4	7016246	7016246	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:7016246G>A	uc011bwg.1	+	12	1798	c.1719G>A	c.(1717-1719)AAG>AAA	p.K573K	TBC1D14_uc003gjs.3_Silent_p.K573K|TBC1D14_uc010idh.2_Silent_p.K293K|TBC1D14_uc011bwh.1_Silent_p.K220K|TBC1D14_uc003gju.3_Silent_p.K64K	NM_001113361	NP_001106832	Q9P2M4	TBC14_HUMAN	TBC1 domain family, member 14 isoform a	573	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			ovary(1)|pancreas(1)	2						CGCATTTCAAGAAGAACAACC	0.358													3	14					0	0	1	0	0
C4orf23	152992	broad.mit.edu	37	4	8469690	8469690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:8469690C>T	uc003glg.1	+	9	1045	c.857C>T	c.(856-858)TCC>TTC	p.S286F	C4orf23_uc003glf.1_Missense_Mutation_p.S274F|C4orf23_uc003glh.1_Missense_Mutation_p.S123F	NM_152544	NP_689757	Q8IYL2	TRM44_HUMAN	hypothetical protein LOC152992 isoform 2	515					tRNA processing	cytoplasm	methyltransferase activity|nucleic acid binding|zinc ion binding				0						AGAGAAGCTTCCGTGGATGAA	0.507													29	41					0	0	1	0	0
GPR78	27201	broad.mit.edu	37	4	8584276	8584276	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:8584276C>T	uc003glk.2	+	2	1106	c.687C>T	c.(685-687)CTC>CTT	p.L229L	CPZ_uc003gll.2_RNA	NM_080819	NP_543009	Q96P69	GPR78_HUMAN	G protein-coupled receptor 78	229	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(4)|ovary(2)	6						AGCGCTGCCTCATCCAGCAGA	0.632													28	30					0	0	1	0	0
SLC2A9	56606	broad.mit.edu	37	4	9922071	9922071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:9922071G>A	uc003gmc.2	-	7	1001	c.940C>T	c.(940-942)CGC>TGC	p.R314C	SLC2A9_uc003gmd.2_Missense_Mutation_p.R285C	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	314	Cytoplasmic (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						ACCTGCCAGCGGACGTAGGGA	0.627													16	16					0	0	1	0	0
LDB2	9079	broad.mit.edu	37	4	16510246	16510246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:16510246G>A	uc003goz.2	-	7	1119	c.803C>T	c.(802-804)TCC>TTC	p.S268F	LDB2_uc003gpa.2_Missense_Mutation_p.S268F|LDB2_uc003gpb.2_Missense_Mutation_p.S268F|LDB2_uc011bxh.1_Missense_Mutation_p.S240F|LDB2_uc010iee.2_Missense_Mutation_p.S268F|LDB2_uc003goy.2_Missense_Mutation_p.S143F|LDB2_uc011bxi.1_Missense_Mutation_p.S144F	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	268							LIM domain binding|transcription cofactor activity				0						GCTGCTGTTGGAAGTGCTGCT	0.498													37	34					0	0	1	0	0
GABRB1	2560	broad.mit.edu	37	4	47405415	47405415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:47405415C>T	uc003gxh.2	+	6	999	c.625C>T	c.(625-627)CCT>TCT	p.P209S	GABRB1_uc011bze.1_Missense_Mutation_p.P139S	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	209	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	AATCGAACTTCCTCAATTTTC	0.413													14	21					0	0	1	0	0
SLC10A4	201780	broad.mit.edu	37	4	48486095	48486095	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:48486095C>T	uc003gyc.2	+	1	736	c.517C>T	c.(517-519)CTG>TTG	p.L173L		NM_152679	NP_689892	Q96EP9	NTCP4_HUMAN	solute carrier family 10, member 4	173	Helical; (Potential).					integral to membrane	bile acid:sodium symporter activity			central_nervous_system(1)	1						GGCGGTGCTCCTGTGTGGCTG	0.637													16	14					0	0	1	0	0
LRRC66	339977	broad.mit.edu	37	4	52861301	52861301	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:52861301G>A	uc003gzi.2	-	4	1900	c.1887C>T	c.(1885-1887)TCC>TCT	p.S629S		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	629						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						GCAAATCAATGGATGAACTCA	0.522													19	37					0	0	1	0	0
KIT	3815	broad.mit.edu	37	4	55573425	55573425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:55573425C>T	uc010igr.2	+	6	1174	c.1087C>T	c.(1087-1089)CCC>TCC	p.P363S	KIT_uc010igs.2_Missense_Mutation_p.P363S	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	363	Ig-like C2-type 4.|Extracellular (Potential).				male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity			soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GGAAGATTATCCCAAGTCTGA	0.398		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				7	8					0	0	1	0	0
UGT2B7	7364	broad.mit.edu	37	4	69962639	69962639	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:69962639A>G	uc003heg.3	+	1	447	c.401A>G	c.(400-402)AAG>AGG	p.K134R	UGT2B7_uc010ihq.2_Missense_Mutation_p.K134R	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	134					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						GTTTCAAATAAGAAATTTATG	0.323													17	19					0	0	1	0	0
UGT2B7	7364	broad.mit.edu	37	4	69962649	69962649	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:69962649G>C	uc003heg.3	+	1	457	c.411G>C	c.(409-411)ATG>ATC	p.M137I	UGT2B7_uc010ihq.2_Missense_Mutation_p.M137I	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	137					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						AGAAATTTATGAAAAAAGTAC	0.323													23	24					0	0	1	0	0
UGT2B7	7364	broad.mit.edu	37	4	69962926	69962926	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:69962926A>G	uc003heg.3	+	1	734	c.688A>G	c.(688-690)AAG>GAG	p.K230E	UGT2B7_uc010ihq.2_Missense_Mutation_p.K230E	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	230					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						ATTTGACATGAAGAAGTGGGA	0.313													11	32					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79308781	79308781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:79308781G>A	uc003hlb.2	+	29	4341	c.3901G>A	c.(3901-3903)GAT>AAT	p.D1301N	FRAS1_uc003hkw.2_Missense_Mutation_p.D1301N	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1300	CSPG 2.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CAGCACATCCGATGTTGCAGT	0.488													11	18					0	0	1	0	0
C4orf22	255119	broad.mit.edu	37	4	81791270	81791270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:81791270C>T	uc003hmf.2	+	4	506	c.457C>T	c.(457-459)CCA>TCA	p.P153S	C4orf22_uc010ijp.2_Missense_Mutation_p.P170S	NM_152770	NP_689983	Q6V702	CD022_HUMAN	hypothetical protein LOC255119	153										skin(2)	2						AAGACTTCTTCCAAGGCCTAC	0.373													31	31					0	0	1	0	0
HELQ	113510	broad.mit.edu	37	4	84347203	84347203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:84347203G>A	uc003hom.2	-	14	2898	c.2719C>T	c.(2719-2721)CTT>TTT	p.L907F	HELQ_uc010ikb.2_Missense_Mutation_p.L840F|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	907							ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						GAGACTCCAAGAATGGCAGCT	0.383								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					39	55					0	0	1	0	0
SLC10A6	345274	broad.mit.edu	37	4	87744896	87744896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:87744896G>A	uc003hqd.2	-	6	1227	c.1079C>T	c.(1078-1080)CCA>CTA	p.P360L		NM_197965	NP_932069	Q3KNW5	SOAT_HUMAN	sodium-dependent organic anion transporter	360	Cytoplasmic (Potential).					integral to membrane|plasma membrane	bile acid:sodium symporter activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.00099)		GCAATCCATTGGCCCTGGTGG	0.542													12	32					0	0	1	0	0
ADH1B	125	broad.mit.edu	37	4	100232738	100232738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:100232738G>A	uc003hus.3	-	7	988	c.904C>T	c.(904-906)CTC>TTC	p.L302F	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.L262F|ADH1B_uc011ceh.1_Missense_Mutation_p.L147F|ADH1B_uc011cei.1_Missense_Mutation_p.L262F	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	302					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	TTTATTGAGAGGTTCTGGGAA	0.453													46	55					0	0	1	0	0
COL25A1	84570	broad.mit.edu	37	4	109861769	109861769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:109861769G>A	uc003hze.1	-	9	1129	c.598C>T	c.(598-600)CCT>TCT	p.P200S	COL25A1_uc003hzg.2_Missense_Mutation_p.P200S|COL25A1_uc003hzd.2_Intron|COL25A1_uc003hzf.2_5'UTR	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	200	Extracellular (Potential).|Collagen-like 2.					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		GGAGGGCCAGGGGGTCCTGGA	0.567													28	54					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114294455	114294455	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:114294455C>T	uc003ibe.3	+	45	11809	c.11709C>T	c.(11707-11709)ATC>ATT	p.I3903I	ANK2_uc003ibd.3_Silent_p.I1809I|ANK2_uc003ibf.3_Silent_p.I1818I|ANK2_uc011cgc.1_Silent_p.I994I|ANK2_uc003ibg.3_Silent_p.I833I|ANK2_uc003ibh.3_Silent_p.I523I|ANK2_uc011cgd.1_Silent_p.I1205I|ANK2_uc010imr.2_5'UTR|ANK2_uc010ims.2_5'UTR	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3870					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CTAGGAAAATCATTAGGCGGT	0.383													20	31					0	0	1	0	0
EXOSC9	5393	broad.mit.edu	37	4	122728701	122728701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:122728701C>T	uc003iea.2	+	6	637	c.529C>T	c.(529-531)CCT>TCT	p.P177S	EXOSC9_uc003idz.2_Missense_Mutation_p.P177S|EXOSC9_uc003ieb.2_Missense_Mutation_p.P161S|EXOSC9_uc010inp.1_RNA	NM_005033	NP_005024	Q06265	EXOS9_HUMAN	exosome component 9 isoform 2	177	ARE binding.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|immune response|nuclear mRNA surveillance|nuclear polyadenylation-dependent rRNA catabolic process|positive regulation of cell growth|rRNA processing	cytosol|nuclear exosome (RNase complex)|nucleolus|nucleolus|nucleus	3'-5'-exoribonuclease activity|AU-rich element binding|protein binding				0						ACAGTATACACCTGAAGAGCG	0.363													25	24					0	0	1	0	0
KIAA1109	84162	broad.mit.edu	37	4	123130398	123130398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:123130398C>T	uc003ieh.2	+	16	1882	c.1837C>T	c.(1837-1839)CCA>TCA	p.P613S	KIAA1109_uc003iei.1_Missense_Mutation_p.P367S|KIAA1109_uc010ins.1_Intron|KIAA1109_uc003iej.1_5'UTR	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	613					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AAATTGCCATCCAAATAAGAT	0.353													11	8					0	0	1	0	0
KIAA1109	84162	broad.mit.edu	37	4	123274079	123274079	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:123274079C>T	uc003ieh.2	+	79	13915	c.13870C>T	c.(13870-13872)CGA>TGA	p.R4624*	KIAA1109_uc003iem.2_Nonsense_Mutation_p.R980*	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4624					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AGCACATCATCGACACTGGCC	0.443													50	48					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126372684	126372684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:126372684G>A	uc003ifj.3	+	9	10513	c.10513G>A	c.(10513-10515)GAT>AAT	p.D3505N	FAT4_uc011cgp.1_Missense_Mutation_p.D1803N|FAT4_uc003ifi.1_Missense_Mutation_p.D983N	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3505	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGATATAAATGATAACGGGCC	0.488													43	68					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138452553	138452553	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:138452553G>A	uc003ihe.3	-	1	1077	c.690C>T	c.(688-690)TCC>TCT	p.S230S	PCDH18_uc003ihf.3_Silent_p.S223S|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.S10S|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	230	Extracellular (Potential).|Cadherin 2.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TTTTTAGTATGGATGAGCCAG	0.453													19	39					0	0	1	0	0
USP38	84640	broad.mit.edu	37	4	144135968	144135968	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:144135968A>T	uc003ijb.2	+	9	3373	c.2839A>T	c.(2839-2841)AAA>TAA	p.K947*	USP38_uc003ija.3_Nonsense_Mutation_p.K947*|USP38_uc003ijc.2_RNA	NM_032557	NP_115946	Q8NB14	UBP38_HUMAN	ubiquitin specific peptidase 38	947					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)|breast(1)|pancreas(1)	5	all_hematologic(180;0.158)					GCTTTTGTATAAAAAACAGCA	0.368													18	18					0	0	1	0	0
NR3C2	4306	broad.mit.edu	37	4	149357276	149357276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:149357276G>A	uc003ilj.3	-	2	1071	c.737C>T	c.(736-738)TCC>TTC	p.S246F	NR3C2_uc003ilk.3_Missense_Mutation_p.S246F|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	246	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	GTGCGACCTGGAGCCTCGATT	0.537													41	40					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155156362	155156362	+	Missense_Mutation	SNP	C	T	T	rs143523763		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:155156362C>T	uc003inw.2	-	25	8077	c.8077G>A	c.(8077-8079)GAA>AAA	p.E2693K		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2693					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		ACATCAGTTTCCCCAGATAGG	0.547													25	42					0	0	1	0	0
NPY2R	4887	broad.mit.edu	37	4	156135422	156135422	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:156135422A>T	uc003ioq.2	+	2	826	c.331A>T	c.(331-333)ACC>TCC	p.T111S	NPY2R_uc003ior.2_Missense_Mutation_p.T111S	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	111	Extracellular (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				TCTTACCTATACCTTAATGGG	0.488													22	29					0	0	1	0	0
C4orf39	152756	broad.mit.edu	37	4	165878301	165878301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:165878301C>T	uc003iqx.1	+	1	202	c.127C>T	c.(127-129)CCT>TCT	p.P43S	TRIM61_uc003iqw.2_Intron	NM_153027	NP_694572	Q96MZ4	CD039_HUMAN	hypothetical protein LOC152756	43											0	all_hematologic(180;0.221)	Prostate(90;0.109)		GBM - Glioblastoma multiforme(119;0.146)		TTCGGGTCTCCCTAACAGACC	0.642													5	8					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	166910622	166910622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:166910622G>A	uc003irh.1	+	2	906	c.259G>A	c.(259-261)GGA>AGA	p.G87R	TLL1_uc011cjn.1_Missense_Mutation_p.G87R|TLL1_uc011cjo.1_5'UTR	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	87					cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GAACCCCTTTGGAAACCTTGG	0.333													33	45					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	166935709	166935709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:166935709C>T	uc003irh.1	+	8	1686	c.1039C>T	c.(1039-1041)CCA>TCA	p.P347S	TLL1_uc011cjn.1_Missense_Mutation_p.P347S|TLL1_uc011cjo.1_Missense_Mutation_p.P171S	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	347	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GTATAGATGTCCAGGTATTGC	0.453													58	64					0	0	1	0	0
HAND2	9464	broad.mit.edu	37	4	174450277	174450277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:174450277G>A	uc003ith.1	-	1	1102	c.164C>T	c.(163-165)CCC>CTC	p.P55L	NBLA00301_uc011ckd.1_5'Flank|NBLA00301_uc003itl.3_5'Flank|NBLA00301_uc003itj.2_5'Flank|NBLA00301_uc010irf.2_5'Flank|NBLA00301_uc010irg.2_5'Flank|NBLA00301_uc010irh.2_5'Flank|NBLA00301_uc010iri.2_5'Flank|NBLA00301_uc010irj.2_5'Flank|NBLA00301_uc010irk.2_5'Flank|NBLA00301_uc010irl.2_5'Flank|NBLA00301_uc010irm.2_5'Flank|NBLA00301_uc010irn.2_5'Flank|NBLA00301_uc003itk.2_5'Flank|HAND2_uc003itg.1_Missense_Mutation_p.P55L|HAND2_uc010ire.1_Missense_Mutation_p.P55L	NM_021973	NP_068808	P61296	HAND2_HUMAN	basic helix-loop-helix transcription factor	55					adult heart development|angiogenesis|apoptosis|cardiac neural crest cell development involved in outflow tract morphogenesis|heart looping|in utero embryonic development|negative regulation of cardiac muscle cell apoptosis|noradrenergic neuron differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|regulation of secondary heart field cardioblast proliferation|thymus development	nuclear chromatin|transcription factor complex	activating transcription factor binding|protein homodimerization activity|RNA polymerase II regulatory region sequence-specific DNA binding|transcription coactivator activity			skin(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0837)|all_hematologic(60;0.107)		all cancers(43;1.37e-18)|Epithelial(43;5.5e-17)|OV - Ovarian serous cystadenocarcinoma(60;3.3e-10)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		GTAGTCGGGGGGCGACATCTC	0.423													8	14					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183721364	183721364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:183721364G>A	uc003ivd.1	+	27	7997	c.7960G>A	c.(7960-7962)GAG>AAG	p.E2654K		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2654	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GACGGAGGGCGAGAAGCGGCA	0.741													6	7					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187516857	187516857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:187516857G>A	uc003izf.2	-	26	13312	c.13124C>T	c.(13123-13125)TCG>TTG	p.S4375L	FAT1_uc010isn.2_5'UTR|FAT1_uc003ize.2_Missense_Mutation_p.S266L	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4375	Cytoplasmic (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GTCATCGCACGATTCGGACTG	0.512										HNSCC(5;0.00058)			35	39					0	0	1	0	0
ZFP42	132625	broad.mit.edu	37	4	188924849	188924849	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:188924849C>T	uc003izg.1	+	3	1133	c.888C>T	c.(886-888)ATC>ATT	p.I296I	ZFP42_uc003izh.1_Silent_p.I296I|ZFP42_uc003izi.1_Silent_p.I296I	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	296	C2H2-type 4.				female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		AAGCCCACATCCTAACGCATG	0.468													14	33					0	0	1	0	0
TRIML1	339976	broad.mit.edu	37	4	189068272	189068272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:189068272G>A	uc003izm.1	+	6	1268	c.1153G>A	c.(1153-1155)GAT>AAT	p.D385N	TRIML1_uc003izn.1_Missense_Mutation_p.D109N	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	385	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		AAAAATCGGAGATGATTACAG	0.502													51	42					0	0	1	0	0
FRG1	2483	broad.mit.edu	37	4	190878646	190878646	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr4:190878646G>T	uc003izs.2	+	6	717	c.526G>T	c.(526-528)GAA>TAA	p.E176*		NM_004477	NP_004468	Q14331	FRG1_HUMAN	FSHD region gene 1	176					rRNA processing	Cajal body|catalytic step 2 spliceosome|nuclear speck|nucleolus					0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;1.73e-30)|Epithelial(3;5.85e-30)|OV - Ovarian serous cystadenocarcinoma(60;5.56e-15)|BRCA - Breast invasive adenocarcinoma(30;9.14e-06)|Lung(3;3.54e-05)|STAD - Stomach adenocarcinoma(60;8.83e-05)|LUSC - Lung squamous cell carcinoma(40;0.000198)|GBM - Glioblastoma multiforme(59;0.00892)|READ - Rectum adenocarcinoma(43;0.161)		AGGAGAAGAAGAAATGATCAA	0.373													5	11					0.000602214	0.000604672	1	1	0
SDHAP3	728609	broad.mit.edu	37	5	1576408	1576408	+	RNA	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:1576408C>T	uc011cmd.1	-	2		c.321G>A			SDHAP3_uc011cme.1_RNA					Homo sapiens cDNA FLJ58919 complete cds, moderately similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC1.3.5.1).												0						CCACCAGGTCCGTGTTCCAGA	0.637													3	10					0	0	1	0	0
ADCY2	108	broad.mit.edu	37	5	7707833	7707833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:7707833C>T	uc003jdz.1	+	9	1350	c.1283C>T	c.(1282-1284)TCT>TTT	p.S428F	ADCY2_uc011cmo.1_Missense_Mutation_p.S248F	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	428	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						GTTCACATTTCTTCTGTCACC	0.388													21	21					0	0	1	0	0
SEMA5A	9037	broad.mit.edu	37	5	9044649	9044649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:9044649G>A	uc003jek.2	-	22	3653	c.2941C>T	c.(2941-2943)CTC>TTC	p.L981F		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	981	Helical; (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						AGGCAGCCGAGGATGGAGCTG	0.567													22	37					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13700953	13700953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:13700953C>T	uc003jfd.2	-	78	13561	c.13519G>A	c.(13519-13521)GCT>ACT	p.A4507T	DNAH5_uc003jfc.2_Missense_Mutation_p.A675T	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4507					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTGTCCAGAGCCCAGCCTTTG	0.438									Kartagener_syndrome				30	38					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31317956	31317956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:31317956G>A	uc003jhe.1	+	11	2133	c.1807G>A	c.(1807-1809)GAG>AAG	p.E603K	CDH6_uc003jhd.1_Missense_Mutation_p.E603K	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	603	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						CTGCCATGCGGAGGCGCTCAT	0.572													30	24					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32058175	32058175	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:32058175G>A	uc003jhl.2	+	12	2554	c.2166G>A	c.(2164-2166)AAG>AAA	p.K722K	PDZD2_uc003jhm.2_Silent_p.K722K|PDZD2_uc011cnx.1_Silent_p.K548K	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	722					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CTGGGCCCAAGGACAGGATCG	0.502													21	32					0	0	1	0	0
AGXT2	64902	broad.mit.edu	37	5	35014173	35014173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:35014173G>A	uc003jjf.2	-	10	1094	c.1015C>T	c.(1015-1017)CAC>TAC	p.H339Y	AGXT2_uc003jje.1_5'UTR|AGXT2_uc011com.1_Intron	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	339					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	AGGACATCGTGGGTTTGGAAG	0.502													27	28					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41000800	41000800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:41000800G>A	uc003jmj.3	-	38	4820	c.4330C>T	c.(4330-4332)CCC>TCC	p.P1444S	HEATR7B2_uc003jmi.3_Missense_Mutation_p.P999S	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1444							binding			ovary(6)|central_nervous_system(2)	8						TTGGGGTTGGGATCCCAAAGG	0.483													7	12					0	0	1	0	0
FGF10	2255	broad.mit.edu	37	5	44305163	44305163	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:44305163C>T	uc003jog.1	-	3	561	c.561G>A	c.(559-561)AGG>AGA	p.R187R		NM_004465	NP_004456	O15520	FGF10_HUMAN	fibroblast growth factor 10 precursor	187					actin cytoskeleton reorganization|activation of MAPK activity|bud outgrowth involved in lung branching|ERK1 and ERK2 cascade|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|insulin receptor signaling pathway|lacrimal gland development|lung saccule development|mesonephros development|negative regulation of cell cycle arrest|positive regulation of ATPase activity|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of DNA repair|positive regulation of DNA replication|positive regulation of epithelial cell migration|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of ERK1 and ERK2 cascade|positive regulation of hair follicle cell proliferation|positive regulation of keratinocyte migration|positive regulation of keratinocyte proliferation|positive regulation of lymphocyte proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of Ras protein signal transduction|positive regulation of transcription, DNA-dependent|positive regulation of urothelial cell proliferation|protein localization at cell surface|radial glial cell differentiation|regulation of saliva secretion|response to protein stimulus|secretion by lung epithelial cell involved in lung growth|tear secretion|thymus development|urothelial cell proliferation	cell surface|extracellular space|nucleus|plasma membrane	chemoattractant activity|growth factor activity|heparin binding|type 2 fibroblast growth factor receptor binding			lung(3)	3	Lung NSC(6;1.12e-06)					TCTGTCCTCTCCTTGGAGCTC	0.433													47	68					0	0	1	0	0
GZMK	3003	broad.mit.edu	37	5	54326282	54326282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:54326282C>T	uc003jpl.1	+	3	277	c.233C>T	c.(232-234)CCC>CTC	p.P78L		NM_002104	NP_002095	P49863	GRAK_HUMAN	granzyme K precursor	78	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				GGCCAGTCTCCCACTGTGGTT	0.438													24	33					0	0	1	0	0
ANKRD55	79722	broad.mit.edu	37	5	55407127	55407127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:55407127C>T	uc003jqu.2	-	10	1600	c.1448G>A	c.(1447-1449)AGA>AAA	p.R483K	ANKRD55_uc003jqt.2_Missense_Mutation_p.R195K	NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	482										skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				GCAGCCAGTTCTGTTATTTAA	0.458													42	56					0	0	1	0	0
HTR1A	3350	broad.mit.edu	37	5	63257242	63257242	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:63257242C>T	uc011cqt.1	-	1	305	c.305G>A	c.(304-306)TGG>TAG	p.W102*		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	102	Extracellular (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GCCCAGTGTCCACTTGTTGAG	0.587													8	11					0	0	1	0	0
MAP1B	4131	broad.mit.edu	37	5	71494436	71494436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:71494436G>A	uc003kbw.3	+	5	5495	c.5254G>A	c.(5254-5256)GAT>AAT	p.D1752N	MAP1B_uc010iyw.1_Missense_Mutation_p.D1769N|MAP1B_uc010iyx.1_Missense_Mutation_p.D1626N|MAP1B_uc010iyy.1_Missense_Mutation_p.D1626N	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	1752						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		TACTCTATCCGATGTTGCTCC	0.483													59	62					0	0	1	0	0
ZNF366	167465	broad.mit.edu	37	5	71756887	71756887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:71756887C>T	uc003kce.1	-	2	623	c.437G>A	c.(436-438)GGG>GAG	p.G146E		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	146					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		GGGCTTGCCCCCAAAGTGTTC	0.617													52	78					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79031447	79031447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:79031447G>A	uc003kgc.2	+	2	6931	c.6859G>A	c.(6859-6861)GAA>AAA	p.E2287K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2287						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GGTGTCTAGGGAAGATTATGG	0.338													25	53					0	0	1	0	0
ACOT12	134526	broad.mit.edu	37	5	80639989	80639989	+	Missense_Mutation	SNP	G	A	A	rs113234186		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:80639989G>A	uc003khl.3	-	9	1025	c.970C>T	c.(970-972)CGC>TGC	p.R324C	RNU5E_uc011cto.1_Intron	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	324					acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		CTGCCTAGGCGAATTCGCTTG	0.353													16	18					0	0	1	0	0
MEF2C	4208	broad.mit.edu	37	5	88018473	88018473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:88018473C>T	uc003kjj.2	-	11	2043	c.1370G>A	c.(1369-1371)AGG>AAG	p.R457K	MEF2C_uc003kji.2_Missense_Mutation_p.R449K|MEF2C_uc003kjk.2_Missense_Mutation_p.R457K|MEF2C_uc003kjm.2_Missense_Mutation_p.R447K|MEF2C_uc003kjl.2_Missense_Mutation_p.R467K	NM_002397	NP_002388	Q06413	MEF2C_HUMAN	myocyte enhancer factor 2C isoform 1	457					apoptosis|B cell proliferation|innate immune response|learning or memory|muscle cell differentiation|muscle organ development|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|neuron development|positive regulation of muscle cell differentiation|positive regulation of survival gene product expression|positive regulation of transcription from RNA polymerase II promoter|regulation of germinal center formation|regulation of megakaryocyte differentiation|regulation of synaptic activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	nuclear speck	activating transcription factor binding|protein heterodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			lung(3)|breast(2)|ovary(1)|large_intestine(1)	7		all_cancers(142;6.67e-05)|all_epithelial(76;7.77e-07)|Lung NSC(167;0.00566)|all_lung(232;0.00732)|Colorectal(57;0.0959)|Ovarian(174;0.1)		OV - Ovarian serous cystadenocarcinoma(54;1.04e-33)|Epithelial(54;1.6e-28)|all cancers(79;2.9e-25)		GGGACTTTCCCTTTCGTCCGG	0.493										HNSCC(66;0.2)			77	115					0	0	1	0	0
CETN3	1070	broad.mit.edu	37	5	89695273	89695273	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:89695273C>T	uc003kjo.2	-	4	487	c.362G>A	c.(361-363)AGG>AAG	p.R121K		NM_004365	NP_004356	O15182	CETN3_HUMAN	centrin 3	121	EF-hand 3.				cell division|centrosome cycle|mitosis	centriole	calcium ion binding				0		all_cancers(142;7.93e-09)|all_epithelial(76;2.13e-11)|Lung NSC(167;2.46e-05)|all_lung(232;3.25e-05)|Ovarian(174;0.00832)|Colorectal(57;0.122)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(54;1.42e-32)|Epithelial(54;1.45e-26)|all cancers(79;2.87e-23)		TCGCAAATTCCTCAAGCTTAT	0.373													27	19					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90002069	90002069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:90002069C>T	uc003kju.2	+	38	8684	c.8588C>T	c.(8587-8589)ACC>ATC	p.T2863I	GPR98_uc003kjt.2_Missense_Mutation_p.T569I|GPR98_uc003kjv.2_Missense_Mutation_p.T463I	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2863	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GTCACATATACCACGGTTCCT	0.348													16	9					0	0	1	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100147688	100147688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:100147688G>A	uc003knk.2	-	5	1271	c.943C>T	c.(943-945)CAT>TAT	p.H315Y		NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	315	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		TCATAATAATGATATTTGACC	0.358													10	19					0	0	1	0	0
GIN1	54826	broad.mit.edu	37	5	102444279	102444279	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:102444279A>C	uc003koa.1	-	2	215	c.133T>G	c.(133-135)TTC>GTC	p.F45V	GIN1_uc003kob.1_5'UTR|GIN1_uc003koc.1_Missense_Mutation_p.F45V	NM_017676	NP_060146	Q9NXP7	GIN1_HUMAN	zinc finger, H2C2 domain containing	45					DNA integration		DNA binding			ovary(1)|skin(1)	2		all_cancers(142;3.23e-07)|all_epithelial(76;3.64e-10)|Prostate(80;0.00914)|Ovarian(225;0.0139)|Lung NSC(167;0.0212)|Colorectal(57;0.0249)|all_lung(232;0.0283)		Epithelial(69;3.57e-14)|COAD - Colon adenocarcinoma(37;0.00794)		TTACCTTTGAAGACAAATTTT	0.343													22	16					0	0	1	0	0
PPIC	5480	broad.mit.edu	37	5	122359598	122359598	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:122359598G>T	uc003kth.2	-	5	716	c.611C>A	c.(610-612)CCT>CAT	p.P204H		NM_000943	NP_000934	P45877	PPIC_HUMAN	peptidylprolyl isomerase C	204					protein folding|signal transduction	cytoplasm	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity|unfolded protein binding			ovary(1)	1		all_cancers(142;0.0168)|Prostate(80;0.0322)|Lung NSC(810;0.102)|all_lung(232;0.163)	KIRC - Kidney renal clear cell carcinoma(527;0.0897)|Kidney(363;0.137)	OV - Ovarian serous cystadenocarcinoma(64;0.000331)|Epithelial(69;0.000553)|all cancers(49;0.00505)	L-Proline(DB00172)	AACCACAAAAGGCGTTTTCAC	0.413													59	70					5.73332e-34	5.86443e-34	1	1	0
ADAMTS19	171019	broad.mit.edu	37	5	128864276	128864276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:128864276G>A	uc003kvb.1	+	6	1216	c.1216G>A	c.(1216-1218)GAA>AAA	p.E406K	ADAMTS19_uc003kvc.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	406	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		GTGGCAACATGAAGAATTTGG	0.363													19	21					0	0	1	0	0
SLC4A9	83697	broad.mit.edu	37	5	139740342	139740342	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:139740342T>C	uc003lfm.2	+	2	283	c.248T>C	c.(247-249)CTC>CCC	p.L83P	SLC4A9_uc003lfj.2_Intron|SLC4A9_uc011czg.1_Intron|SLC4A9_uc003lfl.2_Intron|SLC4A9_uc003lfk.2_Intron	NM_031467	NP_113655	Q96Q91	B3A4_HUMAN	solute carrier family 4, sodium bicarbonate	83	Cytoplasmic (Potential).					integral to membrane|plasma membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCATCTCTGCTCCTGGACATG	0.582													7	12					0	0	1	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263725	140263725	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:140263725G>A	uc003lif.2	+	1	1872	c.1872G>A	c.(1870-1872)GTG>GTA	p.V624V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.V624V|PCDHA13_uc003lid.2_Silent_p.V624V	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	624	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTTCCGCGTGGGGCTGTACA	0.682													39	57					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553816	140553816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:140553816C>T	uc003lit.2	+	1	1574	c.1400C>T	c.(1399-1401)GCC>GTC	p.A467V		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	467	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AACAGCCCCGCCCTGCCCATC	0.627													45	69					0	0	1	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140736306	140736306	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:140736306C>T	uc003ljq.1	+	1	1539	c.1539C>T	c.(1537-1539)ATC>ATT	p.I513I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Silent_p.I513I	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	513	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATACAGGGATCCTATATGCTC	0.522													63	85					0	0	1	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140740431	140740431	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:140740431C>T	uc003ljs.1	+	1	729	c.729C>T	c.(727-729)AGC>AGT	p.S243S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc011dar.1_Silent_p.S243S	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	243	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGTGTTCAGCCAGGACGTGT	0.577													3	53					0	0	1	0	0
PPP2R2B	5521	broad.mit.edu	37	5	145979965	145979965	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:145979965C>T	uc003loe.2	-	7	1374	c.849G>A	c.(847-849)TCG>TCA	p.S283S	PPP2R2B_uc010jgm.2_Silent_p.S272S|PPP2R2B_uc003log.3_Silent_p.S283S|PPP2R2B_uc003lof.3_Silent_p.S283S|PPP2R2B_uc003loi.3_Silent_p.S286S|PPP2R2B_uc003loh.3_Silent_p.S283S|PPP2R2B_uc003loj.3_Silent_p.S263S|PPP2R2B_uc003lok.3_Silent_p.S272S|PPP2R2B_uc011dbu.1_Silent_p.S289S|PPP2R2B_uc011dbv.1_Silent_p.S341S	NM_004576	NP_004567	Q00005	2ABB_HUMAN	beta isoform of regulatory subunit B55, protein	283	WD 5.				apoptosis|signal transduction	cytoskeleton|mitochondrial outer membrane|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)|prostate(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CATCCGAAATCGAAGAGATAA	0.428													30	33					0	0	1	0	0
GEMIN5	25929	broad.mit.edu	37	5	154311726	154311726	+	Silent	SNP	G	A	A	rs3749672	byFrequency	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:154311726G>A	uc003lvx.3	-	4	677	c.594C>T	c.(592-594)ATC>ATT	p.I198I	GEMIN5_uc011ddk.1_Silent_p.I198I	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	198	WD 4.				ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CTATGGAGTGGATTTCATCAT	0.408													43	46					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156741394	156741394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:156741394G>A	uc003lwq.2	+	14	1291	c.1153G>A	c.(1153-1155)GAG>AAG	p.E385K	CYFIP2_uc011ddn.1_Missense_Mutation_p.E359K|CYFIP2_uc011ddo.1_Missense_Mutation_p.E189K|CYFIP2_uc003lwr.2_Missense_Mutation_p.E385K|CYFIP2_uc003lws.2_Missense_Mutation_p.E385K|CYFIP2_uc003lwt.2_Missense_Mutation_p.E263K|CYFIP2_uc011ddp.1_Missense_Mutation_p.E119K	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	385					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTCAGACGAGGAGTATCGCGA	0.522													83	95					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156817538	156817538	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:156817538C>T	uc003lwq.2	+	32	3594	c.3456C>T	c.(3454-3456)TTC>TTT	p.F1152F	CYFIP2_uc011ddn.1_Silent_p.F1126F|CYFIP2_uc011ddo.1_Silent_p.F956F|CYFIP2_uc003lwr.2_Silent_p.F1152F|CYFIP2_uc003lws.2_Silent_p.F1152F|CYFIP2_uc003lwt.2_Silent_p.F1055F|CYFIP2_uc011ddp.1_Silent_p.F886F|CYFIP2_uc003lwv.2_Silent_p.F107F	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	1177					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGCAGTGTTTCGGCGATGGCT	0.383													101	147					0	0	1	0	0
CCNJL	79616	broad.mit.edu	37	5	159682637	159682637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:159682637G>A	uc003lyb.1	-	6	1058	c.806C>T	c.(805-807)TCT>TTT	p.S269F	CCNJL_uc011dee.1_Missense_Mutation_p.S221F|CCNJL_uc003lyc.1_RNA|CCNJL_uc011def.1_Missense_Mutation_p.S221F	NM_024565	NP_078841	Q8IV13	CCNJL_HUMAN	cyclin J-like	269						nucleus					0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCAGTAGGGAGAAAGCTGCAG	0.522													44	71					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167631594	167631594	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:167631594C>T	uc010jjd.2	+	19	3765	c.3765C>T	c.(3763-3765)CCC>CCT	p.P1255P	ODZ2_uc003lzr.3_Silent_p.P1032P|ODZ2_uc003lzt.3_Silent_p.P628P|ODZ2_uc010jje.2_Silent_p.P526P	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GCATCTTTCCCTCTCGAAATG	0.517													18	28					0	0	1	0	0
TSPAN17	26262	broad.mit.edu	37	5	176084570	176084570	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:176084570C>T	uc003met.2	+	9	1099	c.870C>T	c.(868-870)TCC>TCT	p.S290S	TSPAN17_uc003mes.3_3'UTR|TSPAN17_uc003meu.2_Silent_p.S287S|TSPAN17_uc003mev.2_3'UTR|TSPAN17_uc003mew.2_3'UTR	NM_012171	NP_036303	Q96FV3	TSN17_HUMAN	transmembrane 4 superfamily member 17 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane|ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity				0	all_cancers(89;0.00141)|Renal(175;0.000269)|Lung NSC(126;0.00814)|all_lung(126;0.0133)	Medulloblastoma(196;0.00498)|all_neural(177;0.0212)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCACCATTTCCGAGGTCCTGT	0.169													11	8					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178585775	178585775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr5:178585775C>T	uc003mjw.2	-	6	1081	c.1081G>A	c.(1081-1083)GAT>AAT	p.D361N	ADAMTS2_uc011dgm.1_Missense_Mutation_p.D361N	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	361	Peptidase M12B.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		ATGGCGTGATCGTGGTATTCA	0.607													41	102					0	0	1	0	0
GCM2	9247	broad.mit.edu	37	6	10875115	10875115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:10875115C>T	uc003mzn.3	-	5	706	c.634G>A	c.(634-636)GAA>AAA	p.E212K	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	212					cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				TCTGGATTTTCCAAGGGAGGT	0.428													39	66					0	0	1	0	0
HIVEP1	3096	broad.mit.edu	37	6	12121632	12121632	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:12121632C>T	uc003nac.2	+	4	1783	c.1604C>T	c.(1603-1605)CCA>CTA	p.P535L	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	535					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				AGCTTCACTCCAAGCAGTCCA	0.458													17	48					0	0	1	0	0
KIF13A	63971	broad.mit.edu	37	6	17772250	17772250	+	Silent	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:17772250A>G	uc003ncg.3	-	37	4470	c.4365T>C	c.(4363-4365)CCT>CCC	p.P1455P	KIF13A_uc003ncf.2_Silent_p.P1442P|KIF13A_uc003nch.3_Silent_p.P1455P|KIF13A_uc003nci.3_Silent_p.P1442P|KIF13A_uc003nce.1_Silent_p.P41P	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	1455					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			ATGCTTTAAAAGGGCTGACGG	0.443													4	238					0	0	1	0	0
FAM65B	9750	broad.mit.edu	37	6	24873931	24873931	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:24873931G>A	uc003neo.1	-	3	374	c.198C>T	c.(196-198)CCC>CCT	p.P66P	FAM65B_uc011djs.1_Silent_p.P95P|FAM65B_uc011dju.1_Silent_p.P100P|FAM65B_uc003nep.2_Silent_p.P66P|FAM65B_uc011djt.1_Silent_p.P66P	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	66	Involved in cell filopodia formation.				cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						GAGGCTCTTTGGGGGGATTGT	0.428													52	107					0	0	1	0	0
SLC17A4	10050	broad.mit.edu	37	6	25770660	25770660	+	Missense_Mutation	SNP	C	T	T	rs140215842		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:25770660C>T	uc003nfe.2	+	5	699	c.580C>T	c.(580-582)CCA>TCA	p.P194S	SLC17A4_uc011djx.1_Intron|SLC17A4_uc003nff.1_Intron|SLC17A4_uc003nfg.2_Missense_Mutation_p.P131S	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	194					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						ATGGGCTCCCCCACTGGAAAG	0.463													28	245					0	0	1	0	0
SLC17A2	10246	broad.mit.edu	37	6	25916990	25916990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:25916990G>A	uc011dkb.1	-	7	936	c.853C>T	c.(853-855)CAT>TAT	p.H285Y	SLC17A2_uc011dkc.1_Missense_Mutation_p.H285Y|SLC17A2_uc003nfl.2_Missense_Mutation_p.H285Y			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	285	Helical; (Potential).				phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						AACCAGAAATGGCTGAAAAAA	0.448													46	76					0	0	1	0	0
HIST1H3C	8352	broad.mit.edu	37	6	26046004	26046004	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:26046004C>T	uc003nfv.2	+	1	366	c.366C>T	c.(364-366)CCC>CCT	p.P122P	HIST1H2BB_uc003nfu.2_5'Flank	NM_003531	NP_003522	P68431	H31_HUMAN	histone cluster 1, H3c	122				P -> L (in Ref. 13; AAH66884).	blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1						CCATCATGCCCAAAGATATCC	0.537													22	72					0	0	1	0	0
HIST1H1D	3007	broad.mit.edu	37	6	26234618	26234618	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:26234618G>A	uc003nhd.2	-	1	599	c.544C>T	c.(544-546)CAG>TAG	p.Q182*		NM_005320	NP_005311	P16402	H13_HUMAN	histone cluster 1, H1d	182					nucleosome assembly	nucleosome|nucleus	DNA binding			skin(1)	1		all_hematologic(11;0.0945)|Acute lymphoblastic leukemia(11;0.167)				TTTTTTGGCTGAGGTGTTTTC	0.502													42	273					0	0	1	0	0
HIST1H2BH	8345	broad.mit.edu	37	6	26252139	26252139	+	Silent	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:26252139T>C	uc003nhh.2	+	1	261	c.261T>C	c.(259-261)CGT>CGC	p.R87R	HIST1H3F_uc003nhg.1_5'Flank	NM_003524	NP_003515	Q93079	H2B1H_HUMAN	histone cluster 1, H2bh	87					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(3)	3						ACAACAAGCGTTCGACCATCA	0.602													64	149					0	0	1	0	0
ZNF391	346157	broad.mit.edu	37	6	27368846	27368846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:27368846C>T	uc003njf.1	+	3	1215	c.697C>T	c.(697-699)CGT>TGT	p.R233C		NM_001076781	NP_001070249	Q9UJN7	ZN391_HUMAN	zinc finger protein 391	233	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(2)|skin(1)	3						CTTCGGTGACCGTTCAACCAT	0.423													37	28					0	0	1	0	0
ZNF323	64288	broad.mit.edu	37	6	28297363	28297363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:28297363G>A	uc003nla.2	-	2	498	c.98C>T	c.(97-99)TCT>TTT	p.S33F	ZNF323_uc003nld.2_Missense_Mutation_p.S33F|ZNF323_uc010jra.2_Missense_Mutation_p.S33F|ZNF323_uc003nlb.2_Intron|ZNF323_uc010jrb.2_Intron|ZNF323_uc003nlc.2_Missense_Mutation_p.S33F	NM_001135216	NP_001128688	Q96LW9	ZN323_HUMAN	zinc finger protein 323	33					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TTCTTGGCCAGAAAAGTTGTT	0.502													46	206					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28540744	28540744	+	Silent	SNP	A	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:28540744A>G	uc003nlo.2	-	4	3540	c.2922T>C	c.(2920-2922)GCT>GCC	p.A974A		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	974					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ctgtcattgaagctgcaccat	0													29	103					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28541467	28541467	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:28541467G>A	uc003nlo.2	-	4	2817	c.2199C>T	c.(2197-2199)TTC>TTT	p.F733F		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	733					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						atttccgagtgaaactagcat	0													35	29					0	0	1	0	0
OR2J3	442186	broad.mit.edu	37	6	29080495	29080495	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:29080495C>T	uc011dll.1	+	1	828	c.828C>T	c.(826-828)TTC>TTT	p.F276F		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	276	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGGCAAGTTCATTGCCCTCT	0.443													52	104					0	0	1	0	0
OR2J2	26707	broad.mit.edu	37	6	29141754	29141754	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:29141754C>T	uc011dlm.1	+	1	444	c.342C>T	c.(340-342)GTC>GTT	p.V114V		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAGAGTGTGTCCTACTGGTGG	0.488													267	152					0	0	1	0	0
ZFP57	346171	broad.mit.edu	37	6	29641238	29641238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:29641238G>A	uc011dlw.1	-	4	801	c.650C>T	c.(649-651)TCC>TTC	p.S217F	ZFP57_uc003nnl.3_Missense_Mutation_p.S197F	NM_001109809	NP_001103279	Q9NU63	ZFP57_HUMAN	zinc finger protein 57 homolog	133	C2H2-type 2.				DNA methylation involved in embryo development|regulation of gene expression by genetic imprinting|transcription, DNA-dependent		DNA binding|zinc ion binding			ovary(3)|skin(2)	5						ATAGCTGAGGGACTTGGGGCT	0.537													54	135					0	0	1	0	0
TRIM15	89870	broad.mit.edu	37	6	30136170	30136170	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:30136170C>T	uc010jrx.2	+	3	1050	c.571C>T	c.(571-573)CTG>TTG	p.L191L		NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	191	Potential.				mesodermal cell fate determination	intracellular	zinc ion binding				0						GCTGGCCAGGCTGAGGGAGCT	0.547													48	30					0	0	1	0	0
C6orf27	80737	broad.mit.edu	37	6	31744340	31744340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:31744340G>A	uc011dog.1	-	2	455	c.217C>T	c.(217-219)CGT>TGT	p.R73C	C6orf27_uc003nxd.2_5'UTR|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	73						extracellular region				ovary(3)	3						TCCTCAAGACGAAGAGGGGGG	0.632													146	361					0	0	1	0	0
EHMT2	10919	broad.mit.edu	37	6	31855414	31855414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:31855414G>A	uc003nxz.1	-	15	1961	c.1951C>T	c.(1951-1953)CCT>TCT	p.P651S	EHMT2_uc003nxv.1_5'Flank|EHMT2_uc003nxw.1_5'Flank|EHMT2_uc003nxx.1_5'Flank|EHMT2_uc003nxy.1_Missense_Mutation_p.P442S|EHMT2_uc011don.1_Missense_Mutation_p.P674S|EHMT2_uc003nya.1_Missense_Mutation_p.P617S	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	651	ANK 1.				DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1						AACTGCCGAGGGTGGAAACGG	0.532													128	646					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32026070	32026070	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:32026070C>T	uc003nzl.2	-	22	7792	c.7590G>A	c.(7588-7590)GTG>GTA	p.V2530V		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2590	Fibronectin type-III 18.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AGGATCCTGTCACTGTCAGCT	0.672													242	586					0	0	1	0	0
ATF6B	1388	broad.mit.edu	37	6	32086587	32086587	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:32086587G>A	uc003nzn.2	-	11	1242	c.1209C>T	c.(1207-1209)TTC>TTT	p.F403F	TNXB_uc010jts.1_5'Flank|ATF6B_uc003nzm.1_5'Flank|ATF6B_uc003nzo.2_Silent_p.F400F|ATF6B_uc003nzp.1_Silent_p.F92F	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	403	Helical; Signal-anchor for type II membrane protein; (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGAAGAGAAGGAAGACCATGA	0.493													65	420					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32163329	32163329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:32163329G>A	uc003obb.2	-	30	6036	c.5897C>T	c.(5896-5898)CCG>CTG	p.P1966L	GPSM3_uc003oax.3_5'Flank|GPSM3_uc003oay.3_5'Flank|GPSM3_uc003oaz.2_5'Flank|NOTCH4_uc011dpt.1_3'UTR|NOTCH4_uc003oba.2_Missense_Mutation_p.P626L|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1966	Cytoplasmic (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						AGGCGGGATCGGAATGTTGGA	0.622													266	648					0	0	1	0	0
HLA-DRA	3122	broad.mit.edu	37	6	32410366	32410366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:32410366G>A	uc003obh.2	+	2	305	c.224G>A	c.(223-225)CGA>CAA	p.R75Q	HLA-DRA_uc003obi.2_Missense_Mutation_p.R75Q	NM_019111	NP_061984	P01903	DRA_HUMAN	major histocompatibility complex, class II, DR	75	Extracellular (Potential).|Alpha-1.			R -> P (in Ref. 12; AA sequence).	antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to plasma membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity			ovary(1)|skin(1)	2						GAATTTGGACGATTTGCCAGC	0.473									T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Kaposi_Sarcoma_Familial_Clustering_of				69	181					0	0	1	0	0
HLA-DQB2	3120	broad.mit.edu	37	6	32726770	32726770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:32726770C>T	uc003oby.3	-	3	586	c.503G>A	c.(502-504)GGT>GAT	p.G168D	HLA-DQB2_uc003obz.2_Missense_Mutation_p.G168D	NR_003937		Q5SR06	Q5SR06_HUMAN	SubName: Full=Major histocompatibility complex, class II, DQ beta 2; SubName: Full=Putative uncharacterized protein ENSP00000372579;	168					antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|immune response	integral to membrane|MHC class II protein complex					0						GGACACAACACCGGCTGTCTC	0.542													18	85					0	0	1	0	0
KIFC1	3833	broad.mit.edu	37	6	33374158	33374158	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:33374158C>T	uc003oef.3	+	8	2172	c.1722C>T	c.(1720-1722)CCC>CCT	p.P574P	KIFC1_uc011drf.1_Silent_p.P566P	NM_002263	NP_002254	Q9BW19	KIFC1_HUMAN	kinesin family member C1	574	Kinesin-motor.				blood coagulation|cell division|microtubule-based movement|mitotic sister chromatid segregation	early endosome|microtubule|microtubule associated complex|microtubule organizing center|nucleus|spindle	ATP binding|microtubule motor activity				0						GACTTGACCCCGGCTTAGCCC	0.642													226	101					0	0	1	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33409463	33409464	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:33409463_33409464CC>TT	uc011dri.1	+	13	2416_2417	c.2221_2222CC>TT	c.(2221-2223)CCC>TTC	p.P741F	SYNGAP1_uc010juy.2_Missense_Mutation_p.P726F|SYNGAP1_uc010juz.2_Missense_Mutation_p.P453F	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	741					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						GAGTGAGCGGCCCCGGCCTCAG	0.649													6	90					0	0	1	0	0
LHFPL5	222662	broad.mit.edu	37	6	35773711	35773711	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:35773711C>T	uc003olg.1	+	1	641	c.264C>T	c.(262-264)TCC>TCT	p.S88S		NM_182548	NP_872354	Q8TAF8	TMHS_HUMAN	lipoma HMGIC fusion partner-like 5	88						integral to membrane				skin(1)	1						ACTTCTCCTCCATCCCCTCTA	0.557													86	279					0	0	1	0	0
STK38	11329	broad.mit.edu	37	6	36466174	36466174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:36466174G>A	uc003omg.2	-	10	1630	c.1042C>T	c.(1042-1044)CCC>TCC	p.P348S	STK38_uc003omh.2_Missense_Mutation_p.P348S|STK38_uc003omi.2_Missense_Mutation_p.P348S	NM_007271	NP_009202	Q15208	STK38_HUMAN	serine/threonine kinase 38	348	Protein kinase.				intracellular protein kinase cascade|negative regulation of MAP kinase activity	cytoplasm|MLL5-L complex	ATP binding|magnesium ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6						TCAGAGATGGGAACTTCTGGA	0.373													73	119					0	0	1	0	0
CPNE5	57699	broad.mit.edu	37	6	36714220	36714220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:36714220C>T	uc003omr.1	-	16	1220	c.1153G>A	c.(1153-1155)GGG>AGG	p.G385R	CPNE5_uc003omp.1_Missense_Mutation_p.G93R|CPNE5_uc010jwn.1_Missense_Mutation_p.G35R|CPNE5_uc003omq.1_Missense_Mutation_p.G35R	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	385	VWFA.									skin(1)	1						AGCTTGGCCCCGAAGCCCAGG	0.642													112	64					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38881674	38881674	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:38881674G>A	uc003ooe.1	+	65	9858	c.9258G>A	c.(9256-9258)CAG>CAA	p.Q3086Q	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AACTCTCTCAGGATCTTGCAG	0.373													11	57					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38899616	38899616	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:38899616C>T	uc003ooe.1	+	74	11253	c.10653C>T	c.(10651-10653)ATC>ATT	p.I3551I	DNAH8_uc003oog.1_5'UTR|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AATGTGATATCATGGATACAT	0.254													57	276					0	0	1	0	0
PTK7	5754	broad.mit.edu	37	6	43109802	43109802	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:43109802C>T	uc003oub.1	+	12	2100	c.1902C>T	c.(1900-1902)CCC>CCT	p.P634P	PTK7_uc003ouc.1_Intron|PTK7_uc003oud.1_Silent_p.P594P|PTK7_uc003oue.1_Silent_p.P504P|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Silent_p.P642P|PTK7_uc010jyj.1_Intron	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	634	Ig-like C2-type 7.|Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			TCCTGGACCCCACCAAGCTGG	0.667													29	63					0	0	1	0	0
SPATS1	221409	broad.mit.edu	37	6	44329570	44329570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:44329570G>A	uc003oxk.2	+	4	762	c.415G>A	c.(415-417)GAT>AAT	p.D139N	SPATS1_uc003oxg.2_RNA|SPATS1_uc010jzb.2_Missense_Mutation_p.D24N	NM_145026	NP_659463	Q496A3	SPAS1_HUMAN	spermatogenesis associated, serine-rich 1	139										skin(1)	1	all_lung(25;0.00469)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TATTGCAGAAGATGGGCATCG	0.483													86	212					0	0	1	0	0
GPR110	266977	broad.mit.edu	37	6	46991809	46991809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:46991809C>T	uc003oyt.2	-	5	621	c.422G>A	c.(421-423)AGC>AAC	p.S141N	GPR110_uc011dwl.1_5'UTR|GPR110_uc003oyu.1_Missense_Mutation_p.S141N	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	141	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						GACACTCTGGCTGAGGTTGTT	0.527													51	43					0	0	1	0	0
GPR115	221393	broad.mit.edu	37	6	47685067	47685067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:47685067G>A	uc003oza.1	+	8	2272	c.2014G>A	c.(2014-2016)GGG>AGG	p.G672R	GPR115_uc003oyz.1_Missense_Mutation_p.G729R|GPR115_uc003ozb.1_Missense_Mutation_p.G670R	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	672	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						TTCACTGAAGGGGAAATCGAG	0.468													68	185					0	0	1	0	0
LMBRD1	55788	broad.mit.edu	37	6	70411843	70411843	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:70411843G>A	uc003pfa.2	-	10	1033	c.918C>T	c.(916-918)ATC>ATT	p.I306I	LMBRD1_uc003pey.2_Silent_p.I102I|LMBRD1_uc003pez.2_Silent_p.I233I|LMBRD1_uc010kal.2_Silent_p.I233I|LMBRD1_uc003pfb.2_RNA	NM_018368	NP_060838	Q9NUN5	LMBD1_HUMAN	liver regeneration p-53 related protein	306	Helical; Name=6; (Potential).				interspecies interaction between organisms|transport	integral to membrane|lysosomal membrane	cobalamin binding			ovary(1)	1						TTCCCCAGACGATCTAAAAGC	0.269													14	4					0	0	1	0	0
COL19A1	1310	broad.mit.edu	37	6	70778320	70778320	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:70778320C>T	uc003pfc.1	+	15	1293	c.1176C>T	c.(1174-1176)TCC>TCT	p.S392S	COL19A1_uc010kam.1_Silent_p.S288S	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	392	Triple-helical region 2 (COL2).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CATAGGGTTCCCTGGGGATAC	0.408													26	3					0	0	1	0	0
COL10A1	1300	broad.mit.edu	37	6	116442622	116442622	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:116442622C>T	uc003pwm.2	-	3	753	c.657G>A	c.(655-657)GTG>GTA	p.V219V	NT5DC1_uc003pwj.2_Intron|NT5DC1_uc003pwk.2_Intron|NT5DC1_uc003pwl.2_Intron	NM_000493	NP_000484	Q03692	COAA1_HUMAN	type X collagen alpha 1 precursor	219	Triple-helical region.				skeletal system development	collagen	metal ion binding			central_nervous_system(1)	1		all_cancers(87;0.0176)|all_epithelial(87;0.0263)|Colorectal(196;0.234)		all cancers(137;0.0157)|OV - Ovarian serous cystadenocarcinoma(136;0.0325)|GBM - Glioblastoma multiforme(226;0.0446)|Epithelial(106;0.0711)		CTCTTTTTCCCACTCCAGGAG	0.572													28	3					0	0	1	0	0
C6orf170	221322	broad.mit.edu	37	6	121602820	121602820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:121602820G>A	uc003pyo.1	-	14	1546	c.1478C>T	c.(1477-1479)CCT>CTT	p.P493L	C6orf170_uc003pyq.1_RNA|C6orf170_uc003pyp.1_Missense_Mutation_p.P12L	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	493					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		CATACTTGCAGGAGAGTAATT	0.303													36	4					0	0	1	0	0
HINT3	135114	broad.mit.edu	37	6	126296113	126296113	+	Silent	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:126296113T>C	uc003qal.3	+	4	773	c.510T>C	c.(508-510)TTT>TTC	p.F170F	HINT3_uc010keu.2_Silent_p.F61F	NM_138571	NP_612638	Q9NQE9	HINT3_HUMAN	histidine triad nucleotide binding protein 3	170						mitochondrion|nucleolus	hydrolase activity				0				UCEC - Uterine corpus endometrioid carcinoma (4;0.153)|GBM - Glioblastoma multiforme(226;0.0321)		CCTATTGGTTTATCACAGTGA	0.373													41	8					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129704369	129704369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:129704369G>A	uc003qbn.2	+	35	5167	c.5062G>A	c.(5062-5064)GAT>AAT	p.D1688N	LAMA2_uc003qbo.2_Missense_Mutation_p.D1688N	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1688	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GCTTGCCCGGGATGCAGAAGG	0.443													33	5					0	0	1	0	0
ENPP1	5167	broad.mit.edu	37	6	132207717	132207717	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:132207717C>T	uc011ecf.1	+	24	2480	c.2460C>T	c.(2458-2460)ATC>ATT	p.I820I		NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	820	Nuclease.|Extracellular (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	GAAGAGTCATCCGTAACCAAG	0.333													21	1					0	0	1	0	0
TAAR9	134860	broad.mit.edu	37	6	132860462	132860462	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:132860462T>G	uc011eci.1	+	2	1036	c.1034T>G	c.(1033-1035)GTA>GGA	p.V345G		NM_175057	NP_778227	Q96RI9	TAAR9_HUMAN	trace amine associated receptor 9	345	Cytoplasmic (Potential).					plasma membrane	G-protein coupled receptor activity				0	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.0042)|GBM - Glioblastoma multiforme(226;0.00816)		TCTGAAGAAGTAGAGACAGAT	0.348													10	1					0	0	1	0	0
SLC22A1	6580	broad.mit.edu	37	6	160560827	160560827	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:160560827C>A	uc003qtc.2	+	7	1309	c.1204C>A	c.(1204-1206)CGC>AGC	p.R402S	SLC22A1_uc003qtd.2_Missense_Mutation_p.R402S	NM_003057	NP_003048	O15245	S22A1_HUMAN	solute carrier family 22 member 1 isoform a	402	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	organic cation transmembrane transporter activity|protein binding				0		Breast(66;0.000776)|Ovarian(120;0.00556)		OV - Ovarian serous cystadenocarcinoma(65;2.73e-17)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)		CCGCGTGGGCCGCATCTACCC	0.557													3	54					0.00024832	0.000249588	1	1	0
LPA	4018	broad.mit.edu	37	6	160963826	160963826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:160963826C>T	uc003qtl.2	-	35	5533	c.5413G>A	c.(5413-5415)GAT>AAT	p.D1805N		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4313	Kringle 38.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TTCCCACAATCAAATGAAGAG	0.502													50	6					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	160999732	160999732	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:160999732G>A	uc003qtl.2	-	28	4414	c.4294C>T	c.(4294-4296)CTG>TTG	p.L1432L		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3940	Kringle 35.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TTCCTGGTCAGGCCACTGCAA	0.483													32	6					0	0	1	0	0
INTS1	26173	broad.mit.edu	37	7	1525051	1525051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:1525051G>A	uc003skn.2	-	23	3132	c.3031C>T	c.(3031-3033)CCC>TCC	p.P1011S	INTS1_uc003skp.1_Missense_Mutation_p.P358S	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	1011					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		TCCATGGGGGGCTCCTTCTCC	0.657													26	7					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4119180	4119180	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:4119180G>A	uc003smx.2	+	22	3427	c.3288G>A	c.(3286-3288)GGG>GGA	p.G1096G	SDK1_uc010kso.2_Silent_p.G372G	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1096	Fibronectin type-III 5.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GCTATGACGGGAAAACGTCCA	0.572													19	87					0	0	1	0	0
OCM	654231	broad.mit.edu	37	7	5922207	5922207	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:5922207C>T	uc003spe.3	+	2	237	c.145C>T	c.(145-147)CGG>TGG	p.R49W		NM_001097622	NP_001091091	P0CE72	ONCO_HUMAN	oncomodulin	49	EF-hand 1.						calcium ion binding				0		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0978)|OV - Ovarian serous cystadenocarcinoma(56;2.11e-14)		GGATGTTTTCCGGTTCATAGA	0.493													12	75					0	0	1	0	0
C1GALT1	56913	broad.mit.edu	37	7	7278170	7278170	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:7278170G>T	uc010ktn.2	+	3	728	c.505G>T	c.(505-507)GAT>TAT	p.D169Y	C1GALT1_uc003sra.2_Missense_Mutation_p.D169Y|C1GALT1_uc010kto.1_Missense_Mutation_p.D169Y	NM_020156	NP_064541	Q9NS00	C1GLT_HUMAN	core 1 synthase,	169	Lumenal (Potential).				angiogenesis|cell differentiation|kidney development	integral to membrane	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity|metal ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		TTTGAAAGCAGATGATGACAC	0.353													8	35					5.4927e-09	5.54341e-09	1	1	0
C1GALT1	56913	broad.mit.edu	37	7	7278172	7278172	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:7278172T>A	uc010ktn.2	+	3	730	c.507T>A	c.(505-507)GAT>GAA	p.D169E	C1GALT1_uc003sra.2_Missense_Mutation_p.D169E|C1GALT1_uc010kto.1_Missense_Mutation_p.D169E	NM_020156	NP_064541	Q9NS00	C1GLT_HUMAN	core 1 synthase,	169	Lumenal (Potential).				angiogenesis|cell differentiation|kidney development	integral to membrane	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity|metal ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		TGAAAGCAGATGATGACACGT	0.353													7	36					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11416268	11416268	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:11416268G>A	uc003ssf.3	-	26	5070	c.4818C>T	c.(4816-4818)ACC>ACT	p.T1606T	uc003ssb.2_Intron|THSD7A_uc003ssd.3_Silent_p.T110T	NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1606	Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		CGTAAACCCAGGTCTTTAGTC	0.348										HNSCC(18;0.044)			3	2					0	0	1	0	0
AOAH	313	broad.mit.edu	37	7	36656027	36656027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:36656027G>A	uc003tfh.3	-	11	1206	c.805C>T	c.(805-807)CAC>TAC	p.H269Y	AOAH_uc010kxf.2_Missense_Mutation_p.H269Y|AOAH_uc011kba.1_Missense_Mutation_p.H237Y	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	269					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						GGAGAGATGTGAAAATGAGCC	0.433													14	6					0	0	1	0	0
TARP	445347	broad.mit.edu	37	7	38356705	38356705	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:38356705C>T	uc003tge.1	-	3	656	c.279G>A	c.(277-279)AGG>AGA	p.R93R	uc003tfz.1_RNA|TARP_uc003tgf.1_RNA|TARP_uc003tgj.1_RNA|TARP_uc003tgh.1_RNA|TARP_uc003tgi.1_RNA|TARP_uc003tgg.1_RNA			A2JGV3	A2JGV3_HUMAN	Homo sapiens TCRgamma alternate reading frame protein (TCRg) mRNA, complete cds.	Error:Variant_position_missing_in_A2JGV3_after_alignment											0						TTTCAGGTATCCTATCCACCT	0.483													25	6					0	0	1	0	0
POU6F2	11281	broad.mit.edu	37	7	39503881	39503881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:39503881C>T	uc003thb.1	+	10	1714	c.1672C>T	c.(1672-1674)CCT>TCT	p.P558S		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	558	POU-specific.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CCTTTTGTATCCTGCCAGGTT	0.537													13	81					0	0	1	0	0
DBNL	28988	broad.mit.edu	37	7	44096470	44096470	+	Missense_Mutation	SNP	C	T	T	rs145524590		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:44096470C>T	uc003tjp.3	+	5	540	c.442C>T	c.(442-444)CGC>TGC	p.R148C	DBNL_uc003tjn.2_Missense_Mutation_p.R20C|DBNL_uc003tjo.3_Missense_Mutation_p.R148C|DBNL_uc003tjr.3_Missense_Mutation_p.R20C|DBNL_uc003tjq.3_Missense_Mutation_p.R148C|DBNL_uc011kbm.1_Missense_Mutation_p.R123C|DBNL_uc011kbn.1_Missense_Mutation_p.R45C|DBNL_uc011kbo.1_Missense_Mutation_p.R48C|DBNL_uc011kbp.1_Intron|DBNL_uc011kbq.1_Missense_Mutation_p.R73C|DBNL_uc011kbr.1_Missense_Mutation_p.R96C|DBNL_uc011kbs.1_Missense_Mutation_p.R45C	NM_001014436	NP_001014436	Q9UJU6	DBNL_HUMAN	drebrin-like isoform b	148					activation of JUN kinase activity|cellular component disassembly involved in apoptosis|endocytosis|Rac protein signal transduction	cell cortex|cytoskeleton|cytosol|lamellipodium	actin binding|enzyme activator activity|identical protein binding			skin(1)	1						GGAGAGTGGCCGCTTCCAGGA	0.617													13	80					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47874588	47874588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:47874588C>T	uc003tny.1	-	39	6104	c.6104G>A	c.(6103-6105)GGA>GAA	p.G2035E		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2035	Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GGTCTGTGCTCCTCCTCTAAG	0.493													17	71					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47879173	47879173	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:47879173C>T	uc003tny.1	-	36	5640	c.5640G>A	c.(5638-5640)GTG>GTA	p.V1880V		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1880	PLAT.|Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						CCTTCACCATCACGTGGCTGA	0.657													11	5					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103889	53103889	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:53103889G>A	uc003tpz.2	+	1	541	c.525G>A	c.(523-525)CGG>CGA	p.R175R		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	175											0						CCTGCACCCGGGAGACTCTGC	0.582													4	28					0	0	1	0	0
GUSB	2990	broad.mit.edu	37	7	65444470	65444470	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:65444470G>A	uc003tun.2	-	4	716	c.640C>T	c.(640-642)CTG>TTG	p.L214L	GUSB_uc011kdt.1_Intron|GUSB_uc010kzw.1_Silent_p.D42D	NM_000181	NP_000172	P08236	BGLR_HUMAN	glucuronidase, beta precursor	214					glycosaminoglycan catabolic process	lysosome	beta-glucuronidase activity|cation binding				0						GACCGCTGCAGTCCAGCGTAG	0.527													5	43					0	0	1	0	0
WBSCR17	64409	broad.mit.edu	37	7	70800608	70800608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:70800608C>T	uc003tvy.2	+	2	311	c.311C>T	c.(310-312)TCC>TTC	p.S104F	WBSCR17_uc003tvz.2_5'UTR	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	104	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				GCTACTCTTTCCCCGGCTGAA	0.463													53	14					0	0	1	0	0
WBSCR28	135886	broad.mit.edu	37	7	73279479	73279479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:73279479C>T	uc003tzk.2	+	2	265	c.229C>T	c.(229-231)CTC>TTC	p.L77F	RFC2_uc011kfa.1_Intron|WBSCR28_uc003tzl.2_5'UTR	NM_182504	NP_872310	Q6UE05	WBS28_HUMAN	hypothetical protein LOC135886	77	Helical; (Potential).					integral to membrane				breast(1)	1		Lung NSC(55;0.159)				GGGCCAGGCTCTCTGGGCTGG	0.692													51	30					0	0	1	0	0
RSBN1L	222194	broad.mit.edu	37	7	77378743	77378743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:77378743G>A	uc010ldt.1	+	3	750	c.706G>A	c.(706-708)GGG>AGG	p.G236R	RSBN1L_uc003ugm.2_Missense_Mutation_p.G18R	NM_198467	NP_940869	Q6PCB5	RSBNL_HUMAN	round spermatid basic protein 1-like	236	Lys-rich.					nucleus				ovary(1)	1						TCCAACAGGTGGGAAGGAGAA	0.294													7	0					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82582494	82582494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:82582494G>A	uc003uhx.2	-	5	8064	c.7775C>T	c.(7774-7776)CCA>CTA	p.P2592L	PCLO_uc003uhv.2_Missense_Mutation_p.P2592L|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2523					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGAATCTGTTGGAGTCCCTGG	0.448													118	40					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82784267	82784267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:82784267C>T	uc003uhx.2	-	2	1979	c.1690G>A	c.(1690-1692)GGA>AGA	p.G564R	PCLO_uc003uhv.2_Missense_Mutation_p.G564R	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	510	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGAGGTTTTCCAGATCCTGTT	0.507													50	333					0	0	1	0	0
ADAM22	53616	broad.mit.edu	37	7	87792381	87792381	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:87792381G>A	uc003ujn.2	+	23	2041	c.1962G>A	c.(1960-1962)GGG>GGA	p.G654G	ADAM22_uc003ujk.1_Silent_p.G654G|ADAM22_uc003ujl.1_Silent_p.G654G|ADAM22_uc003ujm.2_Silent_p.G654G|ADAM22_uc003ujo.2_Silent_p.G654G|ADAM22_uc003ujp.1_Silent_p.G706G	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	654	Cys-rich.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			TGGAAGATGGGACACCTTGTG	0.398													9	69					0	0	1	0	0
AKAP9	10142	broad.mit.edu	37	7	91643619	91643619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:91643619G>A	uc003ulg.2	+	10	3814	c.3589G>A	c.(3589-3591)GAA>AAA	p.E1197K	AKAP9_uc003ule.2_Missense_Mutation_p.E1209K|AKAP9_uc003ulf.2_Missense_Mutation_p.E1197K|AKAP9_uc003uli.2_Missense_Mutation_p.E822K	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1209					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GGCAGTGTCTGAAGAATGTTC	0.214			T	BRAF	papillary thyroid								11	7					0	0	1	0	0
DLX5	1749	broad.mit.edu	37	7	96650104	96650104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:96650104G>A	uc003uon.2	-	3	1022	c.814C>T	c.(814-816)CCG>TCG	p.P272S		NM_005221	NP_005212	P56178	DLX5_HUMAN	distal-less homeobox 5	272					cell proliferation|endochondral ossification|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	all_cancers(62;9.56e-09)|all_epithelial(64;7.38e-09)|Esophageal squamous(72;0.0125)|all_lung(186;0.0855)|Lung NSC(181;0.0858)					CCCGGCGGCGGCAGGTGGGAA	0.587													43	20					0	0	1	0	0
NPTX2	4885	broad.mit.edu	37	7	98256641	98256641	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:98256641C>T	uc003upl.2	+	4	1230	c.1053C>T	c.(1051-1053)ATC>ATT	p.I351I		NM_002523	NP_002514	P47972	NPTX2_HUMAN	neuronal pentraxin II precursor	351	Pentaxin.				synaptic transmission	extracellular region	metal ion binding|sugar binding			central_nervous_system(2)|skin(1)	3	all_cancers(62;2.28e-09)|all_epithelial(64;4.86e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0128)|all_lung(186;0.0142)		STAD - Stomach adenocarcinoma(171;0.215)			GCGTGCTGATCCTTGGACAAG	0.672													4	31					0	0	1	0	0
ZSCAN21	7589	broad.mit.edu	37	7	99654908	99654908	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:99654908C>T	uc003uso.2	+	2	423	c.279C>T	c.(277-279)TTC>TTT	p.F93F	ZSCAN21_uc011kje.1_Silent_p.F92F|ZSCAN21_uc003usn.1_Silent_p.F92F	NM_145914	NP_666019	Q9Y5A6	ZSC21_HUMAN	zinc finger protein 38	93	SCAN box.				positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			TGGAGCAGTTCCTGACCATCC	0.632													24	6					0	0	1	0	0
MEPCE	56257	broad.mit.edu	37	7	100028647	100028647	+	Silent	SNP	C	T	T	rs140364891		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:100028647C>T	uc003uuw.2	+	1	1119	c.1006C>T	c.(1006-1008)CTG>TTG	p.L336L	ZCWPW1_uc003uut.2_5'Flank|ZCWPW1_uc011kjr.1_5'Flank|ZCWPW1_uc003uuu.1_5'Flank|ZCWPW1_uc011kjt.1_5'Flank|ZCWPW1_uc011kju.1_5'Flank|MEPCE_uc003uuv.2_5'UTR	NM_019606	NP_062552	Q7L2J0	MEPCE_HUMAN	bin3, bicoid-interacting 3	336							methyltransferase activity			upper_aerodigestive_tract(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TCCATCTGCTCTGCAGGGTCC	0.612													123	40					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100348402	100348402	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:100348402C>T	uc003uwj.2	+	12	1569	c.1404C>T	c.(1402-1404)CTC>CTT	p.L468L	ZAN_uc003uwk.2_Silent_p.L468L|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	468	MAM 3.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TCGAACTCCTCCTGGGAAGTC	0.622													16	5					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101892184	101892184	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:101892184C>T	uc003uyx.3	+	24	4418	c.4380C>T	c.(4378-4380)TTC>TTT	p.F1460F	CUX1_uc003uys.3_Silent_p.F1471F|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	1460					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						AGAGCCTTTTCGGCCTCCCCG	0.721													7	4					0	0	1	0	0
FBXL13	222235	broad.mit.edu	37	7	102517984	102517984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:102517984C>T	uc003vaq.2	-	16	1992	c.1565G>A	c.(1564-1566)GGA>GAA	p.G522E	FBXL13_uc010liq.1_Intron|FBXL13_uc010lir.1_Missense_Mutation_p.G522E|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.G522E	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	522	LRR 12.										0						ATATCCAATTCCTTGGGCAGT	0.318													36	10					0	0	1	0	0
ZNF277	11179	broad.mit.edu	37	7	111846817	111846817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:111846817G>A	uc003vge.2	+	1	175	c.46G>A	c.(46-48)GAC>AAC	p.D16N	DOCK4_uc003vfx.2_5'Flank|DOCK4_uc003vfy.2_5'Flank|DOCK4_uc003vga.1_5'Flank|DOCK4_uc010ljt.1_5'Flank|ZNF277_uc003vgd.2_Missense_Mutation_p.D16N|ZNF277_uc003vgf.2_5'UTR|ZNF277_uc003vgc.2_Missense_Mutation_p.D16N	NM_021994	NP_068834	Q9NRM2	ZN277_HUMAN	zinc finger protein (C2H2 type) 277	16						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(2)	4						AATGCAGGAAGACCGTGATGG	0.642													17	10					0	0	1	0	0
C7orf53	286006	broad.mit.edu	37	7	112129956	112129956	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:112129956C>T	uc011kmq.1	+	4	483	c.348C>T	c.(346-348)ATC>ATT	p.I116I	C7orf53_uc003vgl.2_RNA|C7orf53_uc003vgm.2_Silent_p.I116I	NM_001134468	NP_001127940	Q8N8F7	CG053_HUMAN	hypothetical protein LOC286006	116	Potential.					integral to membrane				ovary(1)	1						ATAACATGATCGTAAAGCGAC	0.373													48	25					0	0	1	0	0
TFEC	22797	broad.mit.edu	37	7	115581954	115581954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:115581954C>T	uc003vhj.1	-	7	840	c.656G>A	c.(655-657)CGG>CAG	p.R219Q	TFEC_uc003vhk.1_Missense_Mutation_p.R190Q|TFEC_uc003vhl.3_Missense_Mutation_p.R190Q|TFEC_uc011kmw.1_Missense_Mutation_p.R309Q	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	219						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			AACCTGAATCCGAAGTAGAAG	0.398													55	24					0	0	1	0	0
ZC3HC1	51530	broad.mit.edu	37	7	129658543	129658543	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:129658543G>A	uc003vpi.2	-	10	1497	c.1470C>T	c.(1468-1470)TTC>TTT	p.F490F	ZC3HC1_uc003vph.2_Silent_p.F334F|ZC3HC1_uc010lma.2_Silent_p.F306F	NM_016478	NP_057562	Q86WB0	NIPA_HUMAN	zinc finger, C3HC type 1	490					cell division|mitosis	nucleus	protein kinase binding|zinc ion binding				0	Melanoma(18;0.0435)					GAAATATTCGGAATACTTTCC	0.393													11	64					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138529138	138529138	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:138529138G>A	uc011kql.1	-	18	5425	c.5376C>T	c.(5374-5376)GCC>GCT	p.A1792A	KIAA1549_uc011kqi.1_Silent_p.A576A|KIAA1549_uc003vuk.3_Silent_p.A1742A|KIAA1549_uc011kqj.1_Silent_p.A1792A|KIAA1549_uc011kqk.1_Silent_p.A576A	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1792						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CAGCAAATGGGGCTTCGGCGG	0.617			O	BRAF	pilocytic astrocytoma								23	10					0	0	1	0	0
OR2A2	442361	broad.mit.edu	37	7	143806795	143806795	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:143806795G>A	uc011ktz.1	+	1	120	c.120G>A	c.(118-120)GGG>GGA	p.G40G		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					CCCTGCTGGGGAATGGGGTCA	0.512													17	90					0	0	1	0	0
CTAGE4	100128553	broad.mit.edu	37	7	143882730	143882730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:143882730G>A	uc010lpc.2	+	1	2183	c.2134G>A	c.(2134-2136)GGC>AGC	p.G712S		NM_198495	NP_940897	Q8IX94	CTGE4_HUMAN	CTAGE family, member 4	712	Pro-rich.					integral to membrane					0						GGATACAAGGGGCCCGTTCAT	0.527													25	96					0	0	1	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417743	150417743	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:150417743C>T	uc003whq.2	+	3	738	c.651C>T	c.(649-651)GGC>GGT	p.G217G	GIMAP1_uc003whp.2_Silent_p.G225G	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	217	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGCACAAGGGCGCCCATTACT	0.697													10	2					0	0	1	0	0
NUB1	51667	broad.mit.edu	37	7	151074236	151074236	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:151074236G>A	uc003wjx.2	+	15	1850	c.1845G>A	c.(1843-1845)CTG>CTA	p.L615L	NUB1_uc003wjw.2_Silent_p.L577L|NUB1_uc010lqc.2_RNA	NM_016118	NP_057202	Q9Y5A7	NUB1_HUMAN	NEDD8 ultimate buster-1	591	NEDD8-binding 2.			L->A: Suppression of NEDD8-binding; when associated with A-464; A-468 and A-587. Suppression of NEDD8-buster function; when associated with A-587.	positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|response to interferon-gamma|response to tumor necrosis factor|ubiquitin-dependent protein catabolic process	nucleus	protein binding				0			OV - Ovarian serous cystadenocarcinoma(82;0.00569)	UCEC - Uterine corpus endometrioid carcinoma (81;0.172)		ACTCAACTCTGGAAGATGAAG	0.393													3	2					0	0	1	0	0
GALNTL5	168391	broad.mit.edu	37	7	151711862	151711862	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr7:151711862G>A	uc003wkp.2	+	8	1383	c.1160G>A	c.(1159-1161)TGG>TAG	p.W387*	GALNTL5_uc003wkq.2_Nonsense_Mutation_p.W138*|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Nonsense_Mutation_p.W276*	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	387	Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		GTGCACGTTTGGCTGGATGAA	0.473													39	15					0	0	1	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163215	163215	+	RNA	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:163215G>A	uc010lra.2	-	4		c.918C>T			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						AGATACACATGTATTTAGAGT	0.274													6	37					0	0	1	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163401	163401	+	RNA	SNP	G	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:163401G>C	uc010lra.2	-	4		c.732C>G			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						TCTGGTGCTTGTTGGCTTTAA	0.463													6	44					0	0	1	0	0
DLGAP2	9228	broad.mit.edu	37	8	1513913	1513913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:1513913G>A	uc003wpl.2	+	3	1152	c.1055G>A	c.(1054-1056)AGA>AAA	p.R352K	DLGAP2_uc003wpm.2_Missense_Mutation_p.R352K	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	431					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		CCCTGCAGGAGAATGAGAAGT	0.542													6	14					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	1998937	1998937	+	Silent	SNP	C	T	T	rs140335541	byFrequency	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:1998937C>T	uc003wpx.3	+	2	195	c.57C>T	c.(55-57)TCC>TCT	p.S19S	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	19					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		TCGACCAGTCCTACCGTAATA	0.493													15	36					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2813131	2813131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:2813131C>T	uc011kwk.1	-	64	10367	c.9977G>A	c.(9976-9978)GGA>GAA	p.G3326E	CSMD1_uc011kwj.1_Missense_Mutation_p.G2655E|CSMD1_uc010lrg.2_Missense_Mutation_p.G1217E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3326	Sushi 28.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGGCGACTTTCCTGTCCATTT	0.488													38	30					0	0	1	0	0
DLC1	10395	broad.mit.edu	37	8	12957304	12957304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:12957304G>A	uc003wwm.2	-	9	2986	c.2542C>T	c.(2542-2544)CAC>TAC	p.H848Y	DLC1_uc003wwk.1_Missense_Mutation_p.H411Y|DLC1_uc003wwl.1_Missense_Mutation_p.H445Y|DLC1_uc011kxx.1_Missense_Mutation_p.H337Y	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	848					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						AGGCTGATGTGGCCAGGGCCG	0.577													27	66					0	0	1	0	0
SGCZ	137868	broad.mit.edu	37	8	14181703	14181703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:14181703C>T	uc003wwq.2	-	3	905	c.245G>A	c.(244-246)GGA>GAA	p.G82E	SGCZ_uc010lss.2_Intron	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	69	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		TCTCAGATTTCCCATACCATC	0.353													33	22					0	0	1	0	0
SGCZ	137868	broad.mit.edu	37	8	14412282	14412282	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:14412282C>G	uc003wwq.2	-	2	853	c.193G>C	c.(193-195)GCC>CCC	p.A65P	SGCZ_uc010lss.2_Missense_Mutation_p.A52P	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	52	Helical; Signal-anchor for type II membrane protein; (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma		p.A65A(1)		ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		ATTGTCATGGCTAAGTTAACT	0.378													50	47					0	0	1	0	0
FAM160B2	64760	broad.mit.edu	37	8	21959320	21959320	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:21959320C>T	uc011kyx.1	+	14	1860	c.1809C>T	c.(1807-1809)TTC>TTT	p.F603F	FAM160B2_uc011kyy.1_RNA	NM_022749	NP_073586	Q86V87	F16B2_HUMAN	retinoic acid induced 16	603											0						AGGGCCACTTCCTCCGAGTGC	0.642													23	9					0	0	1	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24251631	24251631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:24251631G>A	uc003xdz.2	+	4	554	c.334G>A	c.(334-336)GAG>AAG	p.E112K	ADAMDEC1_uc010lub.2_Missense_Mutation_p.E33K|ADAMDEC1_uc011lab.1_Missense_Mutation_p.E33K	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	112					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		ACCCAGAGGAGAGGAAATTAC	0.458													15	27					0	0	1	0	0
EBF2	64641	broad.mit.edu	37	8	25718853	25718853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:25718853G>A	uc003xes.1	-	12	1153	c.1136C>T	c.(1135-1137)GCT>GTT	p.A379V	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	379					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		GCCATAAAGAGCTTCCACTAG	0.403													29	61					0	0	1	0	0
ADRA1A	148	broad.mit.edu	37	8	26614222	26614222	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:26614222C>T	uc010lum.1	-	2	1394	c.958G>A	c.(958-960)GAA>AAA	p.E320K	ADRA1A_uc003xfc.1_Intron|ADRA1A_uc010lul.1_Intron|ADRA1A_uc003xfd.1_Intron|ADRA1A_uc003xfe.1_3'UTR|ADRA1A_uc003xff.1_RNA	NM_033302	NP_150645	P35348	ADA1A_HUMAN	alpha-1A-adrenergic receptor isoform 3	Error:Variant_position_missing_in_P35348_after_alignment					activation of phospholipase C activity|aging|apoptosis|calcium ion transport into cytosol|cell-cell signaling|intracellular protein kinase cascade|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of synaptic transmission, GABAergic|positive regulation of action potential|positive regulation of cardiac muscle contraction|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase C signaling cascade|positive regulation of vasoconstriction|response to drug|response to hormone stimulus|response to stress|smooth muscle contraction	integral to plasma membrane	alpha1-adrenergic receptor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5		all_cancers(63;0.122)|Ovarian(32;2.61e-05)|all_epithelial(46;0.118)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;4.92e-10)|Colorectal(74;0.0132)|READ - Rectum adenocarcinoma(644;0.115)	Alfuzosin(DB00346)|Amiodarone(DB01118)|Amphetamine(DB00182)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Carvedilol(DB01136)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Epinastine(DB00751)|Epinephrine(DB00668)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Maprotiline(DB00934)|Mephentermine(DB01365)|Metaraminol(DB00610)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Nefazodone(DB01149)|Nicergoline(DB00699)|Nilutamide(DB00665)|Norepinephrine(DB00368)|Norgestrel(DB00506)|Oxymetazoline(DB00935)|Perphenazine(DB00850)|Phendimetrazine(DB01579)|Phenoxybenzamine(DB00925)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Prazosin(DB00457)|Promazine(DB00420)|Promethazine(DB01069)|Propericiazine(DB01608)|Propiomazine(DB00777)|Pseudoephedrine(DB00852)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Thioridazine(DB00679)|Tolazoline(DB00797)|Trazodone(DB00656)|Trifluoperazine(DB00831)|Ziprasidone(DB00246)	TGGTGGGTTTCATGCTCCCCT	0.517													7	19					0	0	1	0	0
EXTL3	2137	broad.mit.edu	37	8	28573820	28573820	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:28573820C>T	uc003xgz.1	+	3	837	c.244C>T	c.(244-246)CTG>TTG	p.L82L		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	82	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		CGTGCTGGATCTGTGCCGCAT	0.587													41	19					0	0	1	0	0
UBXN8	7993	broad.mit.edu	37	8	30601740	30601740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:30601740C>T	uc003xii.2	+	1	51	c.34C>T	c.(34-36)CTC>TTC	p.L12F	UBXN8_uc010lvi.2_Missense_Mutation_p.L12F|UBXN8_uc011lbb.1_RNA	NM_005671	NP_005662	O00124	UBXN8_HUMAN	reproduction 8	12					single fertilization						0						CATTTTCTTCCTCTCTGCTGT	0.582													7	19					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41546047	41546047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:41546047G>A	uc003xok.2	-	34	4249	c.4165C>T	c.(4165-4167)CTC>TTC	p.L1389F	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.L705F|ANK1_uc003xoi.2_Missense_Mutation_p.L1389F|ANK1_uc003xoj.2_Missense_Mutation_p.L1389F|ANK1_uc003xol.2_Missense_Mutation_p.L1389F|ANK1_uc003xom.2_Missense_Mutation_p.L1430F	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1389	55 kDa regulatory domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GACTCACTGAGAATGCTGTAT	0.587													26	38					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52339228	52339228	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:52339228T>A	uc003xqu.3	-	13	1717	c.1616A>T	c.(1615-1617)CAG>CTG	p.Q539L		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	539	Ig-like C2-type 4.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				AATTATGGGCTGTGGTTCTCC	0.378													4	11					0	0	1	0	0
ST18	9705	broad.mit.edu	37	8	53062480	53062480	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:53062480G>A	uc003xqz.2	-	11	2020	c.1864C>T	c.(1864-1866)CGA>TGA	p.R622*	ST18_uc011ldq.1_Nonsense_Mutation_p.R269*|ST18_uc011ldr.1_Nonsense_Mutation_p.R587*|ST18_uc011lds.1_Nonsense_Mutation_p.R527*|ST18_uc003xra.2_Nonsense_Mutation_p.R622*|ST18_uc003xrb.2_Nonsense_Mutation_p.R622*	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	622						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TCCAGGATTCGATTTTTTTTC	0.413													29	63					0	0	1	0	0
NSMAF	8439	broad.mit.edu	37	8	59547754	59547754	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:59547754G>A	uc003xtt.2	-	5	541	c.327C>T	c.(325-327)TTC>TTT	p.F109F	NSMAF_uc011lee.1_Silent_p.F140F|NSMAF_uc003xtu.2_Silent_p.F109F	NM_003580	NP_003571	Q92636	FAN_HUMAN	neutral sphingomyelinase (N-SMase) activation	109					ceramide metabolic process	cytoplasm|soluble fraction	protein binding|receptor signaling protein activity			ovary(1)	1		all_lung(136;0.174)|Lung NSC(129;0.2)				TTACCTGACTGAAAATGAGTG	0.294													19	76					0	0	1	0	0
C8orf46	254778	broad.mit.edu	37	8	67425821	67425821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:67425821C>T	uc003xwg.2	+	5	782	c.389C>T	c.(388-390)TCA>TTA	p.S130L	C8orf46_uc003xwh.2_RNA|C8orf46_uc011let.1_Silent_p.L109L|C8orf46_uc003xwi.2_5'UTR	NM_152765	NP_689978	Q8TAG6	CH046_HUMAN	hypothetical protein LOC254778	130										skin(2)	2			Epithelial(68;0.0224)|BRCA - Breast invasive adenocarcinoma(89;0.0508)|all cancers(69;0.0558)|OV - Ovarian serous cystadenocarcinoma(28;0.226)			GCCTCTGCCTCATTGGAGGCG	0.597													29	55					0	0	1	0	0
C8orf45	157777	broad.mit.edu	37	8	67791147	67791147	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:67791147C>T	uc003xwz.3	+	7	873	c.702C>T	c.(700-702)TTC>TTT	p.F234F	C8orf45_uc003xwv.2_Silent_p.F234F|C8orf45_uc011lev.1_Silent_p.F234F|C8orf45_uc011lew.1_Silent_p.F165F|C8orf45_uc011lex.1_5'UTR|C8orf45_uc003xwy.3_Silent_p.F234F	NM_173518	NP_775789	Q4G0Z9	CH045_HUMAN	minichromosome maintenance complex	234					DNA replication		ATP binding|DNA binding			ovary(1)	1	Breast(64;0.186)		Epithelial(68;0.00384)|OV - Ovarian serous cystadenocarcinoma(28;0.00913)|all cancers(69;0.0175)|BRCA - Breast invasive adenocarcinoma(89;0.206)			TTACAATTTTCCTAAGAGGTA	0.229													8	34					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	69020427	69020427	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:69020427C>T	uc003xxv.1	+	24	2826	c.2799C>T	c.(2797-2799)TTC>TTT	p.F933F	PREX2_uc011lez.1_Silent_p.F868F	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	933					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GCAGTGATTTCTGCCCTACCA	0.428													24	18					0	0	1	0	0
C8orf34	116328	broad.mit.edu	37	8	69633640	69633640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:69633640G>A	uc010lyz.2	+	10	1163	c.1114G>A	c.(1114-1116)GAA>AAA	p.E372K	C8orf34_uc003xyb.2_Missense_Mutation_p.E347K	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	372					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			GGAGGGTGACGAATTTGAGAA	0.274													9	19					0	0	1	0	0
XKR9	389668	broad.mit.edu	37	8	71619234	71619234	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:71619234C>T	uc003xyq.2	+	4	873	c.339C>T	c.(337-339)TTC>TTT	p.F113F	XKR9_uc010lze.2_Silent_p.F113F|XKR9_uc010lzd.2_5'UTR	NM_001011720	NP_001011720	Q5GH70	XKR9_HUMAN	XK, Kell blood group complex subunit-related	113						integral to membrane				ovary(1)|skin(1)	2	Breast(64;0.0716)		Epithelial(68;0.00301)|all cancers(69;0.0165)|OV - Ovarian serous cystadenocarcinoma(28;0.0524)|BRCA - Breast invasive adenocarcinoma(89;0.166)			CTAGTAACTTCGTGGAAGAAC	0.358													36	21					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77763404	77763404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:77763404C>T	uc003yav.2	+	10	4499	c.4112C>T	c.(4111-4113)TCC>TTC	p.S1371F	ZFHX4_uc003yau.1_Missense_Mutation_p.S1416F|ZFHX4_uc003yaw.1_Missense_Mutation_p.S1371F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1371	C2H2-type 10.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAGATACATTCCCAGTATCAT	0.463										HNSCC(33;0.089)			11	29					0	0	1	0	0
FABP12	646486	broad.mit.edu	37	8	82443501	82443501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:82443501G>A	uc011lfp.1	-	1	50	c.50C>T	c.(49-51)TCC>TTC	p.S17F	FABP12_uc003ycg.3_RNA	NM_001105281	NP_001098751	A6NFH5	FBP12_HUMAN	fatty acid binding protein 12	17							lipid binding|transporter activity				0						GTAGTCTTCGGAATTTTCACA	0.383													12	8					0	0	1	0	0
PSKH2	85481	broad.mit.edu	37	8	87076557	87076557	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:87076557G>A	uc011lfy.1	-	2	489	c.489C>T	c.(487-489)ATC>ATT	p.I163I		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	163	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			CCATCTGGAGGATCCTGACGG	0.478													48	32					0	0	1	0	0
SLC7A13	157724	broad.mit.edu	37	8	87235216	87235216	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:87235216C>T	uc003ydq.1	-	2	900	c.802G>A	c.(802-804)GAA>AAA	p.E268K	SLC7A13_uc003ydr.1_Missense_Mutation_p.E259K	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	268	Extracellular (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						GAGAGAATTTCCCTGGGTGTC	0.383													25	58					0	0	1	0	0
MATN2	4147	broad.mit.edu	37	8	99039905	99039905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:99039905G>A	uc003yic.2	+	14	2435	c.2204G>A	c.(2203-2205)GGG>GAG	p.G735E	MATN2_uc010mbh.1_Missense_Mutation_p.G694E|MATN2_uc003yid.2_Missense_Mutation_p.G735E|MATN2_uc003yie.1_Missense_Mutation_p.G735E|MATN2_uc010mbi.1_Missense_Mutation_p.G568E|MATN2_uc010mbj.1_Intron|RPL30_uc010mbk.1_Intron	NM_002380	NP_002371	O00339	MATN2_HUMAN	matrilin 2 isoform a precursor	735	VWFA 2.					proteinaceous extracellular matrix	calcium ion binding			ovary(2)	2	Breast(36;1.43e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.244)			TCTATGACTGGGCTGGCCCTG	0.517													13	28					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100821706	100821706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:100821706G>A	uc003yiv.2	+	44	8231	c.8120G>A	c.(8119-8121)CGA>CAA	p.R2707Q	VPS13B_uc003yiw.2_Missense_Mutation_p.R2682Q	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2707					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TACAGGGGTCGAACTGCTTCT	0.438													20	53					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100874047	100874047	+	Silent	SNP	G	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:100874047G>T	uc003yiv.2	+	58	11274	c.11163G>T	c.(11161-11163)CGG>CGT	p.R3721R	VPS13B_uc003yiw.2_Silent_p.R3696R	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3721					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			GCCTGGCCCGGAACATGGACC	0.632													6	12					1.26484e-09	1.27914e-09	1	1	0
TM7SF4	81501	broad.mit.edu	37	8	105361686	105361686	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:105361686C>T	uc003ylx.1	+	2	955	c.906C>T	c.(904-906)ATC>ATT	p.I302I		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	302	Helical; (Potential).				osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CCATACTTATCCATCTCTGCA	0.468													95	184					0	0	1	0	0
OXR1	55074	broad.mit.edu	37	8	107691493	107691493	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:107691493G>A	uc011lht.1	+	3	378	c.279G>A	c.(277-279)CAG>CAA	p.Q93Q	OXR1_uc003ymf.2_Silent_p.Q92Q|OXR1_uc011lhu.1_Silent_p.Q85Q|OXR1_uc010mcg.2_Intron|OXR1_uc003ymg.1_Silent_p.Q25Q|OXR1_uc003ymi.1_Silent_p.Q4Q	NM_018002	NP_060472	Q8N573	OXR1_HUMAN	oxidation resistance 1 isoform 1	93					cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion					0			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			TGTCTTTTCAGAAACCTAAAG	0.328													13	35					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110472024	110472024	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:110472024G>A	uc003yne.2	+	47	7309	c.7205G>A	c.(7204-7206)TGG>TAG	p.W2402*		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2402	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AATGTTGAGTGGAATAACAAA	0.353										HNSCC(38;0.096)			3	13					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110503324	110503324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:110503324G>A	uc003yne.2	+	61	10212	c.10108G>A	c.(10108-10110)GGG>AGG	p.G3370R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3370	Extracellular (Potential).|PbH1 6.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTTTACAGTGGGGGAAGGTAA	0.343										HNSCC(38;0.096)			24	74					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	114111049	114111049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:114111049C>T	uc003ynu.2	-	5	1012	c.853G>A	c.(853-855)GAT>AAT	p.D285N	CSMD3_uc003ynt.2_Missense_Mutation_p.D245N|CSMD3_uc011lhx.1_Missense_Mutation_p.D285N|CSMD3_uc010mcx.1_Missense_Mutation_p.D285N	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	285	Extracellular (Potential).|CUB 2.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATTTGAAAATCAGTAAATATG	0.373										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			7	30					0	0	1	0	0
MTSS1	9788	broad.mit.edu	37	8	125716406	125716406	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:125716406G>A	uc003yrk.2	-	2	633	c.99C>T	c.(97-99)TTC>TTT	p.F33F	MTSS1_uc003yrj.2_Silent_p.F33F|MTSS1_uc003yrl.2_Silent_p.F33F	NM_014751	NP_055566	O43312	MTSS1_HUMAN	metastasis suppressor 1	33	IMD.				actin cytoskeleton organization|cell adhesion|cellular component movement|filopodium assembly|transmembrane receptor protein tyrosine kinase signaling pathway	actin cytoskeleton|endocytic vesicle|ruffle	actin monomer binding|cytoskeletal adaptor activity|receptor binding|SH3 domain binding			ovary(1)	1	Ovarian(258;0.00438)|all_neural(195;0.00459)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			CTTTGTTTATGAAATCTTCCC	0.448													31	68					0	0	1	0	0
KIAA0196	9897	broad.mit.edu	37	8	126075832	126075832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:126075832G>A	uc003yrt.2	-	11	1669	c.1340C>T	c.(1339-1341)TCG>TTG	p.S447L	KIAA0196_uc011lir.1_Missense_Mutation_p.S299L|KIAA0196_uc003yru.1_Missense_Mutation_p.S21L	NM_014846	NP_055661	Q12768	STRUM_HUMAN	strumpellin	447					cell death	WASH complex				ovary(2)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			CATCCGCTCCGAACCCTCTTT	0.388													50	31					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133899120	133899120	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:133899120C>T	uc003ytw.2	+	9	1544	c.1503C>T	c.(1501-1503)TTC>TTT	p.F501F		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	501					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GTCAATTTTTCCAGCAACTTG	0.438													27	63					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139793219	139793219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:139793219G>A	uc003yvd.2	-	13	2048	c.1601C>T	c.(1600-1602)TCC>TTC	p.S534F		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	534	Pro-rich.|Gly-rich.|Collagen-like 2.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CAGGCCCAGGGAACCCTAAAG	0.532										HNSCC(7;0.00092)			35	98					0	0	1	0	0
TRAPPC9	83696	broad.mit.edu	37	8	141460946	141460946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:141460946G>A	uc003yvj.2	-	2	661	c.527C>T	c.(526-528)CCC>CTC	p.P176L	TRAPPC9_uc003yvh.2_Missense_Mutation_p.P274L|TRAPPC9_uc003yvi.1_Missense_Mutation_p.P176L	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	176					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						ACAGAGAAGGGGGATCTTATC	0.532													6	24					0	0	1	0	0
CYP11B1	1584	broad.mit.edu	37	8	143961048	143961048	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:143961048T>C	uc003yxi.2	-	1	189	c.182A>G	c.(181-183)TAT>TGT	p.Y61C	CYP11B1_uc003yxj.2_Missense_Mutation_p.Y61C|CYP11B1_uc010mey.2_Missense_Mutation_p.Y61C	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	61					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	CAGGTCCTCATAACCCTGCTC	0.637									Familial_Hyperaldosteronism_type_I				25	64					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144940570	144940570	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:144940570C>T	uc003zaa.1	-	2	14875	c.14862G>A	c.(14860-14862)GAG>GAA	p.E4954E		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4954	Plectin 62.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCACGGCCTCCTCCACCGACA	0.746													8	122					0	0	1	0	0
SPATC1	375686	broad.mit.edu	37	8	145095585	145095585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:145095585C>T	uc011lkw.1	+	3	985	c.883C>T	c.(883-885)CCC>TCC	p.P295S	SPATC1_uc011lkx.1_Missense_Mutation_p.P295S	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	295										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CACACCTGCTCCCAAGACGGC	0.547													25	71					0	0	1	0	0
CPSF1	29894	broad.mit.edu	37	8	145618702	145618702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:145618702C>T	uc003zcj.2	-	37	4324	c.4249G>A	c.(4249-4251)GAG>AAG	p.E1417K		NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	1417					mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			TTGGCTAGCTCGCTGCGCTCC	0.473													3	13					0	0	1	0	0
CDC37L1	55664	broad.mit.edu	37	9	4701869	4701869	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:4701869G>A	uc003zio.2	+	6	963	c.753G>A	c.(751-753)GAG>GAA	p.E251E		NM_017913	NP_060383	Q7L3B6	CD37L_HUMAN	cell division cycle 37 homolog (S.	251	Self-association and interaction with Hsp90.					cytoplasm					0	all_hematologic(13;0.137)	Breast(48;0.238)		GBM - Glioblastoma multiforme(50;0.0318)		TCTAGGCAGAGGAAGAAGGTT	0.323													21	6					0	0	1	0	0
KIAA1432	57589	broad.mit.edu	37	9	5763361	5763361	+	Silent	SNP	G	A	A	rs149797529	by1000genomes	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:5763361G>A	uc003zji.2	+	18	2190	c.2097G>A	c.(2095-2097)CCG>CCA	p.P699P	KIAA1432_uc003zjh.2_Silent_p.P699P|KIAA1432_uc003zjl.3_Silent_p.P662P|KIAA1432_uc003zjj.1_Silent_p.P241P	NM_020829	NP_065880	Q4ADV7	RIC1_HUMAN	connexin 43-interacting protein 150 isoform a	778						integral to membrane					0		Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000525)|Lung(218;0.122)		ACATTTACCCGCTAGCTGTTC	0.473													165	16					0	0	1	0	0
RANBP6	26953	broad.mit.edu	37	9	6013459	6013459	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:6013459G>A	uc003zjr.2	-	1	2160	c.2149C>T	c.(2149-2151)CCT>TCT	p.P717S	RANBP6_uc011lmf.1_Missense_Mutation_p.P365S|RANBP6_uc003zjs.2_Missense_Mutation_p.P305S	NM_012416	NP_036548	O60518	RNBP6_HUMAN	RAN binding protein 6	717					protein transport	cytoplasm|nucleus	binding			ovary(3)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00522)|Lung(218;0.101)		TTCAGTAAAGGAACCATCAGC	0.423													72	7					0	0	1	0	0
GLDC	2731	broad.mit.edu	37	9	6606657	6606657	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:6606657C>T	uc003zkc.2	-	5	841	c.648G>A	c.(646-648)AGG>AGA	p.R216R		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	216					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	GAAATTTCCTCCTCTTGTTGT	0.393													42	9					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8504401	8504401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:8504401C>T	uc003zkk.2	-	22	2393	c.1682G>A	c.(1681-1683)CGA>CAA	p.R561Q	PTPRD_uc003zkp.2_Missense_Mutation_p.R561Q|PTPRD_uc003zkq.2_Missense_Mutation_p.R561Q|PTPRD_uc003zkr.2_Missense_Mutation_p.R555Q|PTPRD_uc003zks.2_Missense_Mutation_p.R551Q|PTPRD_uc003zkl.2_Missense_Mutation_p.R561Q|PTPRD_uc003zkm.2_Missense_Mutation_p.R548Q|PTPRD_uc003zkn.2_Missense_Mutation_p.R561Q|PTPRD_uc003zko.2_Missense_Mutation_p.R558Q	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	561	Fibronectin type-III 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AATGGTAATTCGTTGCTGGAA	0.433										TSP Lung(15;0.13)			76	9					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8517990	8517990	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:8517990C>T	uc003zkk.2	-	20	2112	c.1401G>A	c.(1399-1401)ATG>ATA	p.M467I	PTPRD_uc003zkp.2_Missense_Mutation_p.M467I|PTPRD_uc003zkq.2_Missense_Mutation_p.M467I|PTPRD_uc003zkr.2_Missense_Mutation_p.M461I|PTPRD_uc003zks.2_Missense_Mutation_p.M457I|PTPRD_uc003zkl.2_Missense_Mutation_p.M467I|PTPRD_uc003zkm.2_Missense_Mutation_p.M454I|PTPRD_uc003zkn.2_Missense_Mutation_p.M467I|PTPRD_uc003zko.2_Missense_Mutation_p.M464I	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	467	Fibronectin type-III 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CATTGTGTTTCATCCAGTTGT	0.408										TSP Lung(15;0.13)			105	7					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32631202	32631202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:32631202G>A	uc003zrg.1	-	1	4466	c.4376C>T	c.(4375-4377)CCA>CTA	p.P1459L	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1459	Bromo 1.				male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TTCCCGAGATGGGTAGAGGCA	0.443													126	14					0	0	1	0	0
NOL6	65083	broad.mit.edu	37	9	33465810	33465810	+	Missense_Mutation	SNP	G	A	A	rs147925131		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:33465810G>A	uc003zsz.2	-	19	2551	c.2450C>T	c.(2449-2451)TCG>TTG	p.S817L	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_5'Flank|NOL6_uc003zta.2_Intron|NOL6_uc010mjv.2_Missense_Mutation_p.S814L|NOL6_uc011lob.1_Missense_Mutation_p.S765L|NOL6_uc003ztb.1_Missense_Mutation_p.S817L	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	817					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		GTCCCTCAGCGAGATCATCCC	0.592													28	3					0	0	1	0	0
NOL6	65083	broad.mit.edu	37	9	33468379	33468379	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:33468379G>A	uc003zsz.2	-	10	1349	c.1248C>T	c.(1246-1248)TTC>TTT	p.F416F	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zta.2_Silent_p.F416F|NOL6_uc010mjv.2_Silent_p.F413F|NOL6_uc011lob.1_Silent_p.F356F|NOL6_uc003ztb.1_Silent_p.F416F	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	416					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		AGGAATCCAGGAAGACAACGG	0.577													10	14					0	0	1	0	0
SIT1	27240	broad.mit.edu	37	9	35650624	35650624	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:35650624G>A	uc003zxe.1	-	2	208	c.111C>T	c.(109-111)TCC>TCT	p.S37S	SIT1_uc003zxf.1_Intron	NM_014450	NP_055265	Q9Y3P8	SIT1_HUMAN	SHP2-interacting transmembrane adaptor protein	37	Extracellular (Potential).				regulation of T cell activation|signal transduction	integral to plasma membrane	kinase binding|SH2 domain binding				0			Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CCTGGGTTATGGAGGGGATTC	0.652													55	3					0	0	1	0	0
FBXO10	26267	broad.mit.edu	37	9	37522954	37522954	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:37522954G>A	uc004aab.2	-	7	1847	c.1798C>T	c.(1798-1800)CAG>TAG	p.Q600*	FBXO10_uc004aac.2_Nonsense_Mutation_p.Q616*|FBXO10_uc004aad.2_Nonsense_Mutation_p.Q150*	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	600	PbH1 9.					ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		CCTCCCCACTGATTCTCACGG	0.517													3	0					0	0	1	0	0
IGFBPL1	347252	broad.mit.edu	37	9	38411538	38411538	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:38411538G>A	uc004aba.2	-	4	719	c.696C>T	c.(694-696)CCC>CCT	p.P232P		NM_001007563	NP_001007564	Q8WX77	IBPL1_HUMAN	insulin-like growth factor binding protein-like	232	Ig-like C2-type.				regulation of cell growth	extracellular region	insulin-like growth factor binding				0				GBM - Glioblastoma multiforme(29;0.0437)|Lung(182;0.116)		CCTTTCGCAGGGGGTTGATCT	0.418													31	1					0	0	1	0	0
LOC442421	442421	broad.mit.edu	37	9	66499680	66499680	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:66499680C>A	uc004aee.1	+	1	490	c.490C>A	c.(490-492)CCC>ACC	p.P164T	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						TCATGTTAACCCCTTCCCAGG	0.582													8	30					5.18039e-06	5.22285e-06	1	1	0
Unknown	0	broad.mit.edu	37	9	69440123	69440123	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:69440123G>A	uc010mnx.1	+	3	376	c.207G>A	c.(205-207)ATG>ATA	p.M69I		NM_001098806	NP_001092276			coiled-coil domain containing 29																		TTTTATCTATGAAAAAAGTAC	0.318													8	47					0	0	1	0	0
FLJ46321	389763	broad.mit.edu	37	9	84607007	84607007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:84607007C>T	uc004amn.2	+	4	1669	c.1622C>T	c.(1621-1623)TCC>TTC	p.S541F		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	541						integral to membrane					0						ACATCTATATCCCATGAATCC	0.502													42	35					0	0	1	0	0
KIF27	55582	broad.mit.edu	37	9	86506257	86506257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:86506257G>A	uc004ana.2	-	6	1906	c.1762C>T	c.(1762-1764)CAT>TAT	p.H588Y	KIF27_uc010mpw.2_Missense_Mutation_p.H588Y|KIF27_uc010mpx.2_Missense_Mutation_p.H588Y	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	588					cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						TGCCCCAAATGAGTATCAAAT	0.373													48	11					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90502518	90502518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:90502518G>A	uc004app.3	+	4	3151	c.3116G>A	c.(3115-3117)GGG>GAG	p.G1039E		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	1039						integral to membrane				ovary(3)	3						CTGAAAGTGGGGGAGAAGCCC	0.607													96	12					0	0	1	0	0
AUH	549	broad.mit.edu	37	9	94118217	94118217	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:94118217C>A	uc004arf.3	-	3	401	c.366G>T	c.(364-366)AAG>AAT	p.K122N	AUH_uc004arg.3_Missense_Mutation_p.K122N|AUH_uc011ltu.1_Missense_Mutation_p.K122N	NM_001698	NP_001689	Q13825	AUHM_HUMAN	AU RNA binding protein/enoyl-Coenzyme A	122					branched chain family amino acid catabolic process|mRNA catabolic process	mitochondrial matrix	enoyl-CoA hydratase activity|methylglutaconyl-CoA hydratase activity|mRNA 3'-UTR binding				0						TCCGTACTTTCTTATCAGATT	0.318													25	3					1.80694e-10	1.83114e-10	1	1	0
Unknown	0	broad.mit.edu	37	9	114371502	114371503	+	RNA	DNP	GG	AA	AA			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:114371502_114371503GG>AA	uc004bfk.3	-	2		c.297_298CC>TT								Homo sapiens chromosome 9 open reading frame 29, mRNA (cDNA clone MGC:39589 IMAGE:4838739), complete cds.																		TCGTTGTTGGGGATGAGGGACC	0.505													22	51					0	0	1	0	0
SUSD1	64420	broad.mit.edu	37	9	114825234	114825234	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:114825234C>T	uc004bfu.2	-	13	1874	c.1833G>A	c.(1831-1833)GAG>GAA	p.E611E	SUSD1_uc010mui.2_Silent_p.E611E|SUSD1_uc010muj.2_Silent_p.E611E	NM_022486	NP_071931	Q6UWL2	SUSD1_HUMAN	sushi domain containing 1 precursor	611	Extracellular (Potential).					integral to membrane	calcium ion binding				0						GTCCATTTTTCTCCTTGGCTT	0.478													49	67					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	122004453	122004453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:122004453C>T	uc004bkc.2	-	4	907	c.451G>A	c.(451-453)GAC>AAC	p.D151N	DBC1_uc004bkd.2_Missense_Mutation_p.D151N	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	151	MACPF.				cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GACTTCCTGTCGAGGCGACTT	0.488													34	3					0	0	1	0	0
PPP6C	5537	broad.mit.edu	37	9	127915925	127915925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:127915925G>A	uc004bpg.3	-	6	777	c.556C>T	c.(556-558)CCT>TCT	p.P186S	PPP6C_uc010mwv.2_Missense_Mutation_p.P223S|PPP6C_uc010mww.2_Missense_Mutation_p.P164S|PPP6C_uc011lzr.1_Missense_Mutation_p.P39S	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	186					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						CCTTTATGAGGAATTTCCTGA	0.433													26	6					0	0	1	0	0
ZBTB34	403341	broad.mit.edu	37	9	129641854	129641854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:129641854C>T	uc004bqm.3	+	2	261	c.164C>T	c.(163-165)CCA>CTA	p.P55L		NM_001099270	NP_001092740	Q8NCN2	ZBT34_HUMAN	zinc finger and BTB domain containing 34	55	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GCCAGCTCCCCATATTTCCGG	0.463													105	10					0	0	1	0	0
FAM73B	84895	broad.mit.edu	37	9	131832147	131832147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:131832147C>T	uc004bxa.2	+	15	1664	c.1478C>T	c.(1477-1479)TCC>TTC	p.S493F	FAM73B_uc004bwy.2_RNA|FAM73B_uc004bwz.2_RNA|FAM73B_uc004bxb.2_Missense_Mutation_p.S69F	NM_032809	NP_116198	Q7L4E1	FA73B_HUMAN	hypothetical protein LOC84895	493						integral to membrane				skin(1)	1						GGCTTCATCTCCCATTTCTAC	0.493													86	12					0	0	1	0	0
PPP2R4	5524	broad.mit.edu	37	9	131891281	131891281	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr9:131891281C>T	uc004bxm.1	+	5	606	c.339C>T	c.(337-339)GTC>GTT	p.V113V	PPP2R4_uc004bxl.1_Silent_p.V78V|PPP2R4_uc011mbo.1_Silent_p.V113V|PPP2R4_uc010myr.1_Intron|PPP2R4_uc004bxn.1_Silent_p.V78V|PPP2R4_uc004bxo.1_Intron|PPP2R4_uc011mbp.1_Silent_p.V49V|PPP2R4_uc011mbq.1_Intron|PPP2R4_uc010mys.1_Silent_p.V43V	NM_178001	NP_821068	Q15257	PTPA_HUMAN	protein phosphatase 2A, regulatory subunit B'	113				V -> L (in Ref. 1; CAA51873, 2; CAA60163 and 3; CAB77601/CAB77602).	ATP catabolic process|negative regulation of phosphoprotein phosphatase activity|negative regulation of protein dephosphorylation|positive regulation of apoptosis|positive regulation of phosphoprotein phosphatase activity|positive regulation of protein dephosphorylation	calcium channel complex|cytoplasm|nucleus|protein phosphatase type 2A complex|soluble fraction	ATP binding|peptidyl-prolyl cis-trans isomerase activity|protein heterodimerization activity|protein homodimerization activity|protein phosphatase 2A binding|protein phosphatase type 2A regulator activity|protein tyrosine phosphatase activator activity|receptor binding			ovary(1)|lung(1)|pancreas(1)	3		Medulloblastoma(224;0.235)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)		AGAAACTAGTCGCTCTTCTCA	0.547													36	9					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3229544	3229544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:3229544G>A	uc004crg.3	-	7	6857	c.6700C>T	c.(6700-6702)CTC>TTC	p.L2234F		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2234	Ig-like C2-type 6.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCCACTTTGAGCACCACGTAG	0.512													33	4					0	0	1	0	0
MAP3K15	389840	broad.mit.edu	37	X	19379467	19379467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:19379467G>A	uc004czk.1	-	29	3909	c.2272C>T	c.(2272-2274)CTT>TTT	p.L758F	MAP3K15_uc004czj.1_Missense_Mutation_p.L718F|PDHA1_uc004czg.3_3'UTR|PDHA1_uc004czh.3_3'UTR|PDHA1_uc011mjc.1_3'UTR|PDHA1_uc011mjd.1_3'UTR|PDHA1_uc010nfk.2_3'UTR|PDHA1_uc010nfl.2_3'UTR|MAP3K15_uc004czi.1_Missense_Mutation_p.L217F	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	1283							ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					CGTAGTCGAAGGTATCTTAGA	0.388													13	3					0	0	1	0	0
PTCHD1	139411	broad.mit.edu	37	X	23398303	23398303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:23398303G>A	uc004dal.3	+	2	955	c.947G>A	c.(946-948)GGG>GAG	p.G316E	PTCHD1_uc010nfu.1_Missense_Mutation_p.G316E	NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	316	Helical; (Potential).|SSD.				cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						ACTGCAGCCGGGATCATCAAT	0.522													58	8					0	0	1	0	0
KLHL15	80311	broad.mit.edu	37	X	24007015	24007015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:24007015G>A	uc004dba.3	-	4	1094	c.838C>T	c.(838-840)CCG>TCG	p.P280S		NM_030624	NP_085127	Q96M94	KLH15_HUMAN	kelch-like 15	280										ovary(1)|breast(1)	2						GTAGTTTGCGGTTTTGCAGAA	0.433													54	12					0	0	1	0	0
CXorf59	286464	broad.mit.edu	37	X	36156123	36156123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:36156123C>T	uc004ddk.1	+	9	1280	c.1094C>T	c.(1093-1095)TCA>TTA	p.S365L		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	365						integral to membrane				central_nervous_system(1)	1						AAAGACCTTTCAGATGGTCTT	0.318													16	0					0	0	1	0	0
SLC38A5	92745	broad.mit.edu	37	X	48320620	48320620	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:48320620G>A	uc010nid.2	-	10	810	c.632C>T	c.(631-633)TCG>TTG	p.S211L	SLC38A5_uc004djk.3_Missense_Mutation_p.S160L	NM_033518	NP_277053	Q8WUX1	S38A5_HUMAN	solute carrier family 38, member 5	211	Helical; (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to membrane|plasma membrane				ovary(3)	3						GTGACTCACCGAAACAAGGAA	0.502													12	5					0	0	1	0	0
CACNA1F	778	broad.mit.edu	37	X	49061780	49061780	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:49061780G>A	uc004dnb.2	-	48	5813	c.5751C>T	c.(5749-5751)TTC>TTT	p.F1917F	CACNA1F_uc010nip.2_Silent_p.F1906F	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1917	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	CCAGGGCCACGAAACGTGGGT	0.602													11	2					0	0	1	0	0
CACNA1F	778	broad.mit.edu	37	X	49072962	49072962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:49072962C>T	uc004dnb.2	-	27	3211	c.3149G>A	c.(3148-3150)GGA>GAA	p.G1050E	CACNA1F_uc010nip.2_Missense_Mutation_p.G1039E	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1050	III.|Extracellular (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	TGACACGTCTCCATCTGGGTA	0.567													9	0					0	0	1	0	0
PAGE1	8712	broad.mit.edu	37	X	49455970	49455970	+	Silent	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:49455970C>T	uc004dom.2	-	4	307	c.174G>A	c.(172-174)GAG>GAA	p.E58E		NM_003785	NP_003776	O75459	GAGB1_HUMAN	P antigen family, member 1	58					cellular defense response					skin(1)	1	Ovarian(276;0.236)					CAGCTTCAGGCTCCTGCCCTT	0.393													12	5					0	0	1	0	0
CCNB3	85417	broad.mit.edu	37	X	50052215	50052215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:50052215C>T	uc004dox.3	+	6	1344	c.1046C>T	c.(1045-1047)TCA>TTA	p.S349L	CCNB3_uc004doy.2_Missense_Mutation_p.S349L|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	349					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					TTGAAGAAATCATTGGCCTTG	0.433													35	4					0	0	1	0	0
WNK3	65267	broad.mit.edu	37	X	54275668	54275668	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:54275668T>A	uc004dtd.1	-	17	3552	c.3113A>T	c.(3112-3114)GAT>GTT	p.D1038V	WNK3_uc004dtc.1_Missense_Mutation_p.D1038V	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	1038					intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						AGGCTTTTGATCAAATGCCAG	0.443													21	5					0	0	1	0	0
FOXR2	139628	broad.mit.edu	37	X	55650545	55650545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:55650545C>T	uc004duo.2	+	1	713	c.401C>T	c.(400-402)TCC>TTC	p.S134F		NM_198451	NP_940853	Q6PJQ5	FOXR2_HUMAN	forkhead box R2	134					embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(2)|central_nervous_system(1)	3						CTGCCATCTTCCTCCAGTGAG	0.507													16	4					0	0	1	0	0
IL2RG	3561	broad.mit.edu	37	X	70331331	70331331	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:70331331C>G	uc004dyw.1	-	1	73	c.59G>C	c.(58-60)GGA>GCA	p.G20A	IL2RG_uc004dyv.1_5'Flank|IL2RG_uc004dyx.1_5'UTR	NM_000206	NP_000197	P31785	IL2RG_HUMAN	interleukin 2 receptor, gamma precursor	20					immune response|interleukin-4-mediated signaling pathway|interspecies interaction between organisms	external side of plasma membrane|integral to plasma membrane	cytokine receptor activity|interleukin-2 binding			pancreas(1)	1	Renal(35;0.156)				Aldesleukin(DB00041)|Denileukin diftitox(DB00004)	CAGCCCCACTCCCAGCAGGGG	0.552									Severe_Combined_Immunodeficiency_X-linked				22	4					0	0	1	0	0
CDX4	1046	broad.mit.edu	37	X	72667297	72667298	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:72667297_72667298GG>AA	uc011mqk.1	+	1	208_209	c.208_209GG>AA	c.(208-210)GGA>AAA	p.G70K		NM_005193	NP_005184	O14627	CDX4_HUMAN	caudal type homeobox 4	70						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(35;0.156)					GCCGTCTCTGGGAGTCTGGGGC	0.599													9	9					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73064757	73064757	+	RNA	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:73064757G>A	uc004ebm.1	-	1		c.7832C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AGAAGGGAAAGGAAGATTGAG	0.507													42	10					0	0	1	0	0
KLHL4	56062	broad.mit.edu	37	X	86877370	86877370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:86877370G>A	uc004efb.2	+	5	1266	c.1084G>A	c.(1084-1086)GGA>AGA	p.G362R	KLHL4_uc004efa.2_Missense_Mutation_p.G362R	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	362						cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GAATAGGCAAGGAGAACTGGG	0.418													46	17					0	0	1	0	0
PCDH19	57526	broad.mit.edu	37	X	99605676	99605676	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:99605676G>T	uc010nmz.2	-	4	4319	c.2643C>A	c.(2641-2643)AAC>AAA	p.N881K	PCDH19_uc004efw.3_Missense_Mutation_p.N834K|PCDH19_uc004efx.3_Missense_Mutation_p.N834K	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	881	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						TATTCACGTAGTTGGAGTCAA	0.338													13	1					3.03607e-14	3.08945e-14	1	1	0
NOX1	27035	broad.mit.edu	37	X	100105279	100105279	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:100105279T>A	uc004egj.2	-	9	1200	c.994A>T	c.(994-996)ATC>TTC	p.I332F	NOX1_uc004egl.3_Missense_Mutation_p.I332F|NOX1_uc010nne.2_Missense_Mutation_p.I295F	NM_007052	NP_008983	Q9Y5S8	NOX1_HUMAN	NADPH oxidase 1 isoform long	332	FAD-binding FR-type.|Extracellular (Potential).				angiogenesis|cell migration|electron transport chain|FADH2 metabolic process|hydrogen peroxide metabolic process|inflammatory response|intracellular pH elevation|positive regulation of integrin biosynthetic process|positive regulation of smooth muscle cell proliferation|positive regulation vascular endothelial growth factor production|respiratory burst|response to pH|signal transduction|superoxide anion generation	cell junction|early endosome|invadopodium membrane|NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|Rac GTPase binding|superoxide-generating NADPH oxidase activity|voltage-gated proton channel activity			ovary(1)	1						AGGAGAGAGATTGAGGGGCAA	0.458													12	5					0	0	1	0	0
NXF5	55998	broad.mit.edu	37	X	101095994	101095994	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:101095994G>A	uc011mrk.1	-	8	834	c.474C>T	c.(472-474)TTC>TTT	p.F158F	NXF5_uc004eih.1_RNA|NXF5_uc004eii.1_RNA|NXF5_uc004eij.1_RNA|NXF5_uc004eik.1_RNA|NXF5_uc004eil.1_RNA	NM_032946	NP_116564	Q9H1B4	NXF5_HUMAN	nuclear RNA export factor 5	158					mRNA export from nucleus|multicellular organismal development	actin cytoskeleton|cytoplasm|nucleus	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						TCACCTCAGGGAAATTTCTTT	0.483													82	25					0	0	1	0	0
BEX5	340542	broad.mit.edu	37	X	101409140	101409140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:101409140C>T	uc010nnz.2	-	3	400	c.98G>A	c.(97-99)GGA>GAA	p.G33E	BEX5_uc004eir.2_Missense_Mutation_p.G33E	NM_001159560	NP_001153032	Q5H9J7	BEX5_HUMAN	brain expressed, X-linked 5	33						cytoplasm				upper_aerodigestive_tract(1)	1						TTTAACATTTCCTCCAGGCTC	0.498													36	12					0	0	1	0	0
MUM1L1	139221	broad.mit.edu	37	X	105451247	105451247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:105451247G>A	uc004emf.1	+	4	2471	c.1822G>A	c.(1822-1824)GAA>AAA	p.E608K	MUM1L1_uc004emg.1_Missense_Mutation_p.E608K	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	608										ovary(2)|pancreas(1)|skin(1)	4						TCAGTTGGATGAAGTGGTGAA	0.323													11	4					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107863518	107863518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:107863518G>A	uc004enz.1	+	31	2741	c.2539G>A	c.(2539-2541)GAT>AAT	p.D847N	COL4A5_uc011mso.1_Missense_Mutation_p.D847N|COL4A5_uc004eob.1_Missense_Mutation_p.D455N	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	847	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						AGAGAAGGGGGATCCAGGACC	0.458									Alport_syndrome_with_Diffuse_Leiomyomatosis				40	6					0	0	1	0	0
KLHL13	90293	broad.mit.edu	37	X	117053535	117053535	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:117053535G>A	uc004eql.2	-	4	581	c.519C>T	c.(517-519)TTC>TTT	p.F173F	KLHL13_uc004eqk.2_Silent_p.F122F|KLHL13_uc011mtn.1_Silent_p.F13F|KLHL13_uc011mto.1_Silent_p.F167F|KLHL13_uc011mtp.1_Silent_p.F175F|KLHL13_uc004eqm.2_Silent_p.F122F|KLHL13_uc011mtq.1_Silent_p.F157F	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	173					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						GAATCTGTAGGAAACTGGCAG	0.383													40	6					0	0	1	0	0
FAM70A	55026	broad.mit.edu	37	X	119427889	119427889	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:119427889G>A	uc004eso.3	-	3	446	c.219C>T	c.(217-219)TTC>TTT	p.F73F	FAM70A_uc004esp.3_Silent_p.F73F|FAM70A_uc010nqo.2_Silent_p.F73F	NM_017938	NP_060408	Q5JRV8	FA70A_HUMAN	hypothetical protein LOC55026 isoform 1	73	Helical; (Potential).					integral to membrane				lung(1)|breast(1)	2						TGATTCCAAGGAACGATCCAA	0.408													32	7					0	0	1	0	0
CT47B1	643311	broad.mit.edu	37	X	120008840	120008840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:120008840C>T	uc011muc.1	-	1	940	c.685G>A	c.(685-687)GAG>AAG	p.E229K		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	229											0						gcggcctcctctgGGGGTTTC	0.557													72	8					0	0	1	0	0
GPC4	2239	broad.mit.edu	37	X	132439841	132439841	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:132439841C>A	uc004exc.1	-	6	1326	c.1114G>T	c.(1114-1116)GAA>TAA	p.E372*	GPC4_uc011mvg.1_Nonsense_Mutation_p.E302*	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	372					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					GTTGGGCGTTCCTCGGGGTGA	0.552													130	24					6.01465e-48	6.1586e-48	1	1	0
GPR112	139378	broad.mit.edu	37	X	135430317	135430317	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:135430317G>A	uc004ezu.1	+	6	4743	c.4452G>A	c.(4450-4452)AGG>AGA	p.R1484R	GPR112_uc010nsb.1_Silent_p.R1279R|GPR112_uc010nsc.1_Silent_p.R1251R	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1484	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TCTCCGACAGGATCACTACAG	0.443													61	16					0	0	1	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717286	142717286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:142717286C>T	uc004fbx.2	-	2	2015	c.1639G>A	c.(1639-1641)GAG>AAG	p.E547K	SLITRK4_uc004fby.2_Missense_Mutation_p.E547K	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	547	Extracellular (Potential).|LRRCT 2.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTCAACTTCTCCACCCACAGC	0.458													65	15					0	0	1	0	0
GABRE	2564	broad.mit.edu	37	X	151123888	151123888	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:151123888G>A	uc004ffi.2	-	8	1143	c.1089C>T	c.(1087-1089)TTC>TTT	p.F363F	GABRE_uc011myd.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	363	Helical; (Potential).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TGTAGATCAGGAAGTTGAGCA	0.498													26	4					0	0	1	0	0
GABRA3	2556	broad.mit.edu	37	X	151336985	151336985	+	Silent	SNP	G	A	A			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:151336985G>A	uc010ntk.1	-	10	1434	c.1194C>T	c.(1192-1194)ATC>ATT	p.I398I		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	398	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGGTCCCCACGATGTTGAAGG	0.517													78	16					0	0	1	0	0
ATP2B3	492	broad.mit.edu	37	X	152815107	152815107	+	Silent	SNP	G	A	A	rs143273384	byFrequency	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chrX:152815107G>A	uc004fht.1	+	9	1617	c.1491G>A	c.(1489-1491)GAG>GAA	p.E497E	ATP2B3_uc004fhs.1_Silent_p.E497E	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	497	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					ACTACAAAGAGATTCCGGCCC	0.552													34	3					0	0	1	0	0
BCL9	607	broad.mit.edu	37	1	147091501	147091501	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr1:147091501delC	uc001epq.2	+	8	2280	c.1540delC	c.(1540-1542)CCCfs	p.P514fs	BCL9_uc010ozr.1_Frame_Shift_Del_p.P440fs	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	514	Poly-Pro.|Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					GGTCCGAGGACCCCCCCCTCC	0.582			T	IGH@|IGL@	B-ALL								7	252	---	---	---	---					
LOC653544	653544	broad.mit.edu	37	10	135491013	135491014	+	Frame_Shift_Ins	INS	-	T	T	rs138894859		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr10:135491013_135491014insT	uc010qvi.1	+	1	735_736	c.624_625insT	c.(622-627)GCCAGGfs	p.A208fs		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	208_209						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						ATCGAAGGGCCAGGCACCCGGG	0.708													7	105	---	---	---	---					
MESP2	145873	broad.mit.edu	37	15	90320121	90320144	+	In_Frame_Del	DEL	AGGGGCAGGGGCAAGGGCAGGGGC	-	-	rs66601910		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr15:90320121_90320144delAGGGGCAGGGGCAAGGGCAGGGGC	uc002bon.2	+	1	533_556	c.533_556delAGGGGCAGGGGCAAGGGCAGGGGC	c.(532-558)GAGGGGCAGGGGCAAGGGCAGGGGCAG>GAG	p.GQGQGQGQ195del	MESP2_uc010uqa.1_Intron	NM_001039958	NP_001035047	Q0VG99	MESP2_HUMAN	mesoderm posterior 2 homolog	195_202	13 X 2 AA tandem repeats of G-Q.|12.			Missing (in Ref. 2; AAI11414).	Notch signaling pathway	nucleus	DNA binding				0	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)			ACGCaggcggaggggcaggggcaagggcaggggcaggggcaggg	0.473													3	5	---	---	---	---					
CTCFL	140690	broad.mit.edu	37	20	56099187	56099187	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr20:56099187delT	uc010gix.1	-	1	737	c.75delA	c.(73-75)AAAfs	p.K25fs	CTCFL_uc010giw.1_Frame_Shift_Del_p.K25fs|CTCFL_uc002xym.2_Frame_Shift_Del_p.K25fs|CTCFL_uc010giz.1_Intron|CTCFL_uc010giy.1_Intron|CTCFL_uc010gja.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjb.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjc.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjd.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gje.2_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjf.2_Intron|CTCFL_uc010gjg.2_Intron|CTCFL_uc010gjh.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gji.1_Intron|CTCFL_uc010gjj.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjk.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjl.1_Frame_Shift_Del_p.K25fs	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	25					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			CCTTCAGGCCTTTTTCCGGCA	0.502													7	493	---	---	---	---					
VENTXP7	391518	broad.mit.edu	37	3	21447901	21447902	+	RNA	INS	-	CC	CC	rs143568999	by1000genomes	TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr3:21447901_21447902insCC	uc003ccd.2	+	1		c.684_685insCC				NR_002311				Homo sapiens VENT homeobox (Xenopus laevis) pseudogene 7 (VENTXP7), non-coding RNA.												0						CTGGCATACCACCCCCCACGCC	0.663													3	6	---	---	---	---					
TNXB	7148	broad.mit.edu	37	6	32063513	32063514	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr6:32063513_32063514delAC	uc003nzl.2	-	3	2318_2319	c.2116_2117delGT	c.(2116-2118)GTAfs	p.V706fs		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	706	EGF-like 18.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GAAGCCCTCTACACACACACAC	0.668													11	696	---	---	---	---					
ZFHX4	79776	broad.mit.edu	37	8	77617546	77617547	+	Frame_Shift_Ins	INS	-	G	G	rs13252403		TCGA-EE-A29R-06A-11D-A197-08	TCGA-EE-A29R-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30a5d55e-3ec6-4b70-9c2f-c9adc9ddbc60	1531350c-ba25-4f51-96e3-e4274a0a2c54	g.chr8:77617546_77617547insG	uc003yav.2	+	2	1610_1611	c.1223_1224insG	c.(1222-1224)CTGfs	p.L408fs	ZFHX4_uc003yat.1_Frame_Shift_Ins_p.L408fs|ZFHX4_uc003yau.1_Frame_Shift_Ins_p.L408fs|ZFHX4_uc003yaw.1_Frame_Shift_Ins_p.L408fs	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	408						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GAAGTGAATCTGGGGGGGCTGT	0.535										HNSCC(33;0.089)			11	32	---	---	---	---					
