Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ACAP3	116983	broad.mit.edu	37	1	1237424	1237424	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:1237424G>A	uc001aeb.2	-	5	356	c.282C>T	c.(280-282)ATC>ATT	p.I94I	ACAP3_uc001aea.2_Silent_p.I52I|ACAP3_uc001aec.1_Silent_p.I52I	NM_030649	NP_085152	Q96P50	ACAP3_HUMAN	ArfGAP with coiled-coil, ankyrin repeat and PH	94				I -> N (in Ref. 5; AAH51194).	filopodium assembly|regulation of ARF GTPase activity|signal transduction		ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding				0						GGTCAAACAGGATCTGGGGGC	0.652													29	64					0	0	0.004878	0	0
ATAD3C	219293	broad.mit.edu	37	1	1389841	1389841	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:1389841C>T	uc001aft.2	+	4	1334	c.339C>T	c.(337-339)TCC>TCT	p.S113S		NM_001039211	NP_001034300	Q5T2N8	ATD3C_HUMAN	ATPase family, AAA domain containing 3C	113							ATP binding|nucleoside-triphosphatase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GGGAGACGTCCCGCATCACGG	0.667													9	22					0	0	0.006214	0	0
ATAD3C	219293	broad.mit.edu	37	1	1391169	1391169	+	Splice_Site	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:1391169A>T	uc001aft.2	+	6	1434	c.439_splice	c.e6-2	p.P147_splice		NM_001039211	NP_001034300	Q5T2N8	ATD3C_HUMAN	ATPase family, AAA domain containing 3C								ATP binding|nucleoside-triphosphatase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		CTTCCTCGGCAGCCCAGCCTG	0.637													9	24					0	0	0.006214	0	0
MEGF6	1953	broad.mit.edu	37	1	3425766	3425766	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:3425766G>A	uc001akl.2	-	12	1628	c.1401C>T	c.(1399-1401)TTC>TTT	p.F467F	MEGF6_uc001akk.2_Silent_p.F362F	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	467						extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		GGGGCCGCACGAAAGGCAGCT	0.687													4	5					0	0	0.000602	0	0
CHD5	26038	broad.mit.edu	37	1	6166825	6166826	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:6166825_6166826CC>TA	uc001amb.1	-	39	5692_5693	c.5592_5593GG>TA	c.(5590-5595)CTGGAG>CTTAAG	p.E1865K	CHD5_uc001alz.1_Missense_Mutation_p.E722K|CHD5_uc001ama.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1865					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		AGCAGCTCCTCCAGCTGGTTCA	0.441													8	26					0	0	0.004672	0	0
EXOSC10	5394	broad.mit.edu	37	1	11158200	11158200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:11158200G>A	uc001asa.2	-	2	175	c.125C>T	c.(124-126)TCC>TTC	p.S42F	EXOSC10_uc001asb.2_Missense_Mutation_p.S42F|EXOSC10_uc009vmy.1_Missense_Mutation_p.S42F	NM_001001998	NP_001001998	Q01780	EXOSX_HUMAN	exosome component 10 isoform 1	42					CUT catabolic process|histone mRNA catabolic process|maturation of 5.8S rRNA|nuclear polyadenylation-dependent rRNA catabolic process|nuclear retention of unspliced pre-mRNA at the site of transcription|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasm|nuclear exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5' exonuclease activity|exoribonuclease activity|identical protein binding|nucleotide binding|protein serine/threonine kinase activity|RNA binding			upper_aerodigestive_tract(1)	1	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.18e-07)|COAD - Colon adenocarcinoma(227;8.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000315)|Kidney(185;0.000832)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|READ - Rectum adenocarcinoma(331;0.0526)|STAD - Stomach adenocarcinoma(313;0.202)		TGCCACCACGGACCCAAGAGC	0.438													18	54					0	0	0.006122	0	0
ANGPTL7	10218	broad.mit.edu	37	1	11253759	11253759	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:11253759G>A	uc001ase.2	+	3	839	c.600G>A	c.(598-600)GGG>GGA	p.G200G	MTOR_uc001asd.2_Intron	NM_021146	NP_066969	O43827	ANGL7_HUMAN	angiopoietin-like 7 precursor	200	Fibrinogen C-terminal.				response to oxidative stress|signal transduction	extracellular region	receptor binding				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.39e-06)|COAD - Colon adenocarcinoma(227;0.000244)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0487)		GCATCCGTGGGGACTTCTGGC	0.602													17	37					0	0	0.004990	0	0
PTCHD2	57540	broad.mit.edu	37	1	11561576	11561576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:11561576C>T	uc001ash.3	+	2	665	c.527C>T	c.(526-528)CCC>CTC	p.P176L	PTCHD2_uc001asi.1_Missense_Mutation_p.P176L	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	176	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CGCGTCATCCCCGCGGCCTCA	0.687													8	19					0	0	0.006214	0	0
NPPB	4879	broad.mit.edu	37	1	11918773	11918773	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:11918773T>C	uc001atj.2	-	1	220	c.118A>G	c.(118-120)ACG>GCG	p.T40A		NM_002521	NP_002512	P16860	ANFB_HUMAN	natriuretic peptide precursor B preproprotein	40					body fluid secretion|cGMP biosynthetic process|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation	extracellular space	diuretic hormone activity			ovary(2)	2	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.88e-06)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)	Carvedilol(DB01136)|Nesiritide(DB04899)|Testosterone(DB00624)	AACCCGGACGTTTCCAAGTCC	0.622													47	91					0	0	0.003610	0	0
VPS13D	55187	broad.mit.edu	37	1	12337809	12337809	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:12337809C>T	uc001atv.2	+	19	4305	c.4164C>T	c.(4162-4164)ATC>ATT	p.I1388I	VPS13D_uc001atw.2_Silent_p.I1388I|VPS13D_uc001atx.2_Silent_p.I576I	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1388					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TTGTTTCTATCCCTCGGAAGC	0.438													14	44					0	0	0.001855	0	0
PRAMEF6	440561	broad.mit.edu	37	1	13001293	13001293	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:13001293C>T	uc001auq.2	-	3	476	c.390G>A	c.(388-390)AGG>AGA	p.R130R	PRAMEF5_uc001aur.2_Intron	NM_001010889	NP_001010889	Q5VXH4	PRAM6_HUMAN	PRAME family member 6	130											0	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GTGTTTTGTTCCTCTTGGCAT	0.498													109	689					0	0	0.003610	0	0
EFHD2	79180	broad.mit.edu	37	1	15736621	15736621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:15736621G>A	uc001awh.2	+	1	231	c.154G>A	c.(154-156)GAC>AAC	p.D52N		NM_024329	NP_077305	Q96C19	EFHD2_HUMAN	EF-hand domain family, member D2	52						membrane raft					0		Renal(390;0.00145)|Breast(348;0.00173)|Colorectal(325;0.00215)|all_lung(284;0.00366)|Lung NSC(340;0.00395)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)|Hepatocellular(190;0.152)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.59e-07)|COAD - Colon adenocarcinoma(227;3.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000119)|KIRC - Kidney renal clear cell carcinoma(229;0.00251)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		GGGCAGCGCGGACTGCGAGCT	0.776													5	19					0	0	0.001168	0	0
FBXO42	54455	broad.mit.edu	37	1	16632330	16632330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:16632330G>A	uc001ayg.2	-	3	551	c.335C>T	c.(334-336)CCT>CTT	p.P112L	FBXO42_uc001ayf.2_Missense_Mutation_p.P19L|FBXO42_uc001ayh.2_Missense_Mutation_p.P112L	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	112										upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		TGGGGTTCCAGGATAAGGATA	0.473													35	70					0	0	0.003755	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946438	16946438	+	RNA	SNP	G	A	A	rs28392876	by1000genomes	TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:16946438G>A	uc010ocf.1	-	3		c.460C>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						GCCTTCCGCCGGGCCAGCAGC	0.672													7	20					0	0	0.003080	0	0
PADI3	51702	broad.mit.edu	37	1	17588688	17588688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:17588688C>T	uc001bai.2	+	3	374	c.334C>T	c.(334-336)CTC>TTC	p.L112F		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	112					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	GGTGCTCTACCTCACCTGTGT	0.498													6	21					0	0	0.001984	0	0
TAS1R2	80834	broad.mit.edu	37	1	19181159	19181159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:19181159C>T	uc001bba.1	-	3	806	c.805G>A	c.(805-807)GCG>ACG	p.A269T		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	269	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	ACGACGCGCGCTGTGCTCTGC	0.622													13	23					0	0	0.002450	0	0
TMCO4	255104	broad.mit.edu	37	1	20009900	20009900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:20009900G>A	uc001bcn.2	-	16	1780	c.1538C>T	c.(1537-1539)GCC>GTC	p.A513V	TMCO4_uc001bcm.2_Missense_Mutation_p.A344V|TMCO4_uc001bco.1_Missense_Mutation_p.A513V|TMCO4_uc001bcp.1_Missense_Mutation_p.A473V	NM_181719	NP_859070	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	513						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		CTTCAGGATGGCATCCATCTG	0.672													7	21					0	0	0.001984	0	0
EPHA8	2046	broad.mit.edu	37	1	22927217	22927217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:22927217G>A	uc001bfx.1	+	14	2577	c.2452G>A	c.(2452-2454)GCC>ACC	p.A818T		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	818	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CTTCTCCTCGGCCAGCGACGT	0.662													21	81					0	0	0.001523	0	0
RCAN3	11123	broad.mit.edu	37	1	24861718	24861718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:24861718C>T	uc001bjj.2	+	5	990	c.677C>T	c.(676-678)CCT>CTT	p.P226L	RCAN3_uc009vrd.2_Missense_Mutation_p.P216L|RCAN3_uc009vre.2_Missense_Mutation_p.P168L|RCAN3_uc009vrf.2_Missense_Mutation_p.L169F|RCAN3_uc009vrg.2_Missense_Mutation_p.L111F	NM_013441	NP_038469	Q9UKA8	RCAN3_HUMAN	Down syndrome critical region gene 1-like 2	226					anatomical structure morphogenesis|calcium-mediated signaling		nucleotide binding|RNA binding|troponin I binding				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00473)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0427)|OV - Ovarian serous cystadenocarcinoma(117;1.13e-24)|Colorectal(126;6.09e-08)|COAD - Colon adenocarcinoma(152;3.33e-06)|GBM - Glioblastoma multiforme(114;0.000923)|BRCA - Breast invasive adenocarcinoma(304;0.0018)|KIRC - Kidney renal clear cell carcinoma(1967;0.00359)|STAD - Stomach adenocarcinoma(196;0.00493)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.14)		CGCCCCGACCCTCCGACCGCA	0.587													15	32					0	0	0.004990	0	0
CNKSR1	10256	broad.mit.edu	37	1	26515377	26515377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:26515377G>A	uc001bln.3	+	20	1884	c.1826G>A	c.(1825-1827)CGG>CAG	p.R609Q	CNKSR1_uc001blm.3_Missense_Mutation_p.R602Q|CNKSR1_uc009vsd.2_Missense_Mutation_p.R344Q|CNKSR1_uc009vse.2_Missense_Mutation_p.R344Q|CNKSR1_uc001blo.2_Missense_Mutation_p.R344Q|CATSPER4_uc010oey.1_5'Flank|CATSPER4_uc010oez.1_5'Flank|CATSPER4_uc009vsf.2_5'Flank	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	609					Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		TCTTTCATGCGGCGCAACCGA	0.652													44	77					0	0	0.003214	0	0
CATSPER4	378807	broad.mit.edu	37	1	26524815	26524815	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:26524815C>T	uc010oez.1	+	6	717	c.717C>T	c.(715-717)TTC>TTT	p.F239F	CATSPER4_uc010oey.1_Silent_p.F61F|CATSPER4_uc009vsf.2_Intron	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	239	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		TTGGTGCATTCGTGCCCAAGC	0.512													113	209					0	0	0.003610	0	0
PTAFR	5724	broad.mit.edu	37	1	28477200	28477200	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:28477200G>A	uc001bpl.2	-	2	460	c.333C>T	c.(331-333)ATC>ATT	p.I111I	PTAFR_uc001bpm.3_Silent_p.I111I|PTAFR_uc009vte.2_Silent_p.I111I	NM_000952	NP_000943	P25105	PTAFR_HUMAN	platelet-activating factor receptor	111	Helical; Name=3; (Potential).				chemotaxis|inflammatory response|interferon-gamma-mediated signaling pathway|phosphatidylinositol-mediated signaling	integral to plasma membrane|nucleus	phospholipid binding|platelet activating factor receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00715)|all_lung(284;0.00732)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.215)|OV - Ovarian serous cystadenocarcinoma(117;6e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|STAD - Stomach adenocarcinoma(196;0.00678)|READ - Rectum adenocarcinoma(331;0.0649)		GGTTATAAGTGATGACGCCCA	0.547													27	60					0	0	0.004656	0	0
CSMD2	114784	broad.mit.edu	37	1	34192204	34192204	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:34192204G>A	uc001bxn.1	-	16	2360	c.2331C>T	c.(2329-2331)AGC>AGT	p.S777S	CSMD2_uc001bxm.1_Silent_p.S817S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	777	CUB 5.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCCAGGCACAGCTCAAGGCAT	0.612													24	49					0	0	0.002780	0	0
CSMD2	114784	broad.mit.edu	37	1	34209001	34209001	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:34209001G>A	uc001bxn.1	-	14	1962	c.1933C>T	c.(1933-1935)CTG>TTG	p.L645L	CSMD2_uc001bxm.1_Silent_p.L685L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	645	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AAGGTGCCCAGGACGGGCGCC	0.617													26	48					0	0	0.006320	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370128	35370128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:35370128G>A	uc001byc.2	-	1	857	c.857C>T	c.(856-858)CCC>CTC	p.P286L		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	286					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				CAGGCAGAAGGGACCACCAGG	0.662													43	53					0	0	0.002852	0	0
ZMYM4	9202	broad.mit.edu	37	1	35851684	35851684	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:35851684T>C	uc001byt.2	+	11	1810	c.1730T>C	c.(1729-1731)GTT>GCT	p.V577A	ZMYM4_uc009vuu.2_Missense_Mutation_p.V545A|ZMYM4_uc001byu.2_Missense_Mutation_p.V253A|ZMYM4_uc009vuv.2_Missense_Mutation_p.V316A	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	577	MYM-type 5.				multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GGTGTACAAGTTCAGTGTAAC	0.338													38	65					0	0	0.006230	0	0
MACF1	23499	broad.mit.edu	37	1	39797305	39797305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:39797305C>T	uc010oiu.1	+	1	496	c.365C>T	c.(364-366)TCT>TTT	p.S122F	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	1687	Plectin 2.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GGCCTCATTTCTGCATGGCTT	0.418													31	55					0	0	0.007291	0	0
MACF1	23499	broad.mit.edu	37	1	39888178	39888178	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:39888178A>T	uc010oiu.1	+	23	11400	c.11269A>T	c.(11269-11271)AAT>TAT	p.N3757Y	MACF1_uc010ois.1_Missense_Mutation_p.N3255Y|MACF1_uc001cda.1_Missense_Mutation_p.N3142Y|MACF1_uc001cdc.1_Missense_Mutation_p.N2321Y	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	5322	Spectrin 6.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GGAAGAGATCAATGCTCGATG	0.418													15	33					0	0	0.004007	0	0
HPCAL4	51440	broad.mit.edu	37	1	40149819	40149819	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:40149819G>A	uc001cdr.2	-	3	288	c.168C>T	c.(166-168)TTC>TTT	p.F56F	HPCAL4_uc010oix.1_Intron	NM_016257	NP_057341	Q9UM19	HPCL4_HUMAN	hippocalcin-like protein 4	56	EF-hand 1.				central nervous system development	intracellular	calcium ion binding			central_nervous_system(1)	1	all_cancers(7;4.65e-13)|Lung NSC(20;2.88e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;4.3e-17)|all cancers(16;8.48e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			CGCCGTAGGGGAAGAACTGAG	0.692													7	15					0	0	0.001984	0	0
CCDC24	149473	broad.mit.edu	37	1	44459600	44459601	+	Missense_Mutation	DNP	AC	CT	CT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:44459600_44459601AC>CT	uc001clj.2	+	5	632_633	c.461_462AC>CT	c.(460-462)AAC>ACT	p.N154T	SLC6A9_uc009vxe.2_Intron|SLC6A9_uc010okm.1_Intron|CCDC24_uc001clk.2_Missense_Mutation_p.N109T|CCDC24_uc009vxc.2_Missense_Mutation_p.N118T	NM_152499	NP_689712	Q8N4L8	CCD24_HUMAN	coiled-coil domain containing 24	154											0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				GACCAACTGAACGTGTCCAACA	0.564													20	33					0	0	0.004672	0	0
SLC6A9	6536	broad.mit.edu	37	1	44468560	44468560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:44468560G>A	uc001cll.2	-	6	1099	c.907C>T	c.(907-909)CTC>TTC	p.L303F	SLC6A9_uc009vxe.2_Missense_Mutation_p.L159F|SLC6A9_uc010okm.1_Missense_Mutation_p.L230F|SLC6A9_uc001clm.2_Missense_Mutation_p.L249F|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Missense_Mutation_p.L234F|SLC6A9_uc001cln.2_Missense_Mutation_p.L230F|SLC6A9_uc010oko.1_Missense_Mutation_p.L119F|SLC6A9_uc010okp.1_RNA	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	303	Helical; Name=4; (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	ATGAGGCAGAGGAAGACGACC	0.602													50	110					0	0	0.003610	0	0
SLC6A9	6536	broad.mit.edu	37	1	44475699	44475699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:44475699G>A	uc001cll.2	-	4	668	c.476C>T	c.(475-477)TCC>TTC	p.S159F	SLC6A9_uc009vxe.2_Missense_Mutation_p.S15F|SLC6A9_uc010okm.1_Missense_Mutation_p.S86F|SLC6A9_uc001clm.2_Missense_Mutation_p.S105F|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Missense_Mutation_p.S90F|SLC6A9_uc001cln.2_Missense_Mutation_p.S86F|SLC6A9_uc010oko.1_Intron|SLC6A9_uc010okp.1_RNA	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	159						integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	CTGGCCGAAGGAGAGCTCCAT	0.597													36	73					0	0	0.002836	0	0
MUTYH	4595	broad.mit.edu	37	1	45798075	45798075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:45798075G>A	uc001cnm.2	-	9	983	c.767C>T	c.(766-768)TCC>TTC	p.S256F	MUTYH_uc009vxn.2_Missense_Mutation_p.S81F|MUTYH_uc001cnf.2_Missense_Mutation_p.S231F|MUTYH_uc009vxo.2_Missense_Mutation_p.S231F|MUTYH_uc001cng.2_Missense_Mutation_p.S242F|MUTYH_uc001cnj.2_Missense_Mutation_p.S139F|MUTYH_uc001cni.2_Missense_Mutation_p.S231F|MUTYH_uc001cnh.2_Missense_Mutation_p.S232F|MUTYH_uc001cno.2_Missense_Mutation_p.S139F|MUTYH_uc001cnk.2_Missense_Mutation_p.S116F|MUTYH_uc010oll.1_Intron|MUTYH_uc001cnl.2_Missense_Mutation_p.S245F|MUTYH_uc009vxp.2_Missense_Mutation_p.S259F|MUTYH_uc001cnn.2_Missense_Mutation_p.S246F	NM_012222	NP_036354	Q9UIF7	MUTYH_HUMAN	mutY homolog isoform 1	256					depurination|mismatch repair	nucleoplasm	4 iron, 4 sulfur cluster binding|DNA N-glycosylase activity|endonuclease activity|metal ion binding|MutSalpha complex binding				0	Acute lymphoblastic leukemia(166;0.155)					GAGCTGCTGGGAAACAAGGGT	0.587			Mis			colorectal		BER_DNA_glycosylases	MUTYH-associated_polyposis				14	30					0	0	0.004007	0	0
KIAA0494	9813	broad.mit.edu	37	1	47182005	47182005	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:47182005T>C	uc001cqk.3	-	2	1273	c.296A>G	c.(295-297)AAG>AGG	p.K99R	KIAA0494_uc010omh.1_Missense_Mutation_p.K99R|KIAA0494_uc001cql.1_Missense_Mutation_p.K99R	NM_014774	NP_055589	O75071	K0494_HUMAN	hypothetical protein LOC9813	99							calcium ion binding				0	Acute lymphoblastic leukemia(166;0.155)					CAGATCCTCCTTGAGAGCAAC	0.378													4	51					0	0	0.000248	0	0
CYP4B1	1580	broad.mit.edu	37	1	47264903	47264903	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:47264903C>T	uc001cqm.3	+	1	234	c.150C>T	c.(148-150)CCC>CCT	p.P50P	CYP4B1_uc009vyl.1_5'UTR|CYP4B1_uc001cqn.3_Silent_p.P50P|CYP4B1_uc009vym.2_Silent_p.P50P|CYP4B1_uc010omk.1_5'UTR	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	50					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CAGGGCCTCCCACCCACTGGC	0.547													4	11					0	0	0.000248	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47533196	47533196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:47533196C>T	uc001cqu.1	+	1	37	c.34C>T	c.(34-36)CAC>TAC	p.H12Y		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	12	Helical; Signal-anchor for type II membrane protein; (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						ACTCATGGCTCACCCCTTCTT	0.547													8	19					0	0	0.003080	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47582349	47582349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:47582349G>A	uc001cqu.1	+	11	1297	c.1294G>A	c.(1294-1296)GAA>AAA	p.E432K		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	432	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						ATTCTCCAGGGAAAATTCTGA	0.393													14	26					0	0	0.004990	0	0
CYP4A22	284541	broad.mit.edu	37	1	47607252	47607252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:47607252C>T	uc001cqv.1	+	3	398	c.347C>T	c.(346-348)TCC>TTC	p.S116F	CYP4A22_uc009vyo.2_Missense_Mutation_p.S116F|CYP4A22_uc009vyp.2_Missense_Mutation_p.S116F	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	116						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						GACCCGAAATCCCATGGATCC	0.458													17	55					0	0	0.006122	0	0
C1orf175	374977	broad.mit.edu	37	1	55118967	55118967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:55118967C>T	uc010ooe.1	+	3	692	c.368C>T	c.(367-369)CCA>CTA	p.P123L	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxo.2_Missense_Mutation_p.P123L|C1orf175_uc010ooc.1_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Intron|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.P123L|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	123						integral to membrane	binding				0						CGCCTCTGTCCAGCCTCAAAC	0.403													41	102					0	0	0.003610	0	0
TTC22	55001	broad.mit.edu	37	1	55266437	55266437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:55266437C>T	uc009vzt.1	-	1	505	c.400G>A	c.(400-402)GAG>AAG	p.E134K	TTC22_uc001cxz.3_Missense_Mutation_p.E134K	NM_001114108	NP_001107580	Q5TAA0	TTC22_HUMAN	tetratricopeptide repeat domain 22 isoform 1	134							binding				0						TCGGGCTCCTCTGCCAGGCCC	0.731													3	6					0	0	0.004672	0	0
C8B	732	broad.mit.edu	37	1	57395135	57395135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:57395135G>A	uc001cyp.2	-	12	1785	c.1718C>T	c.(1717-1719)CCT>CTT	p.P573L	C8B_uc010oon.1_Missense_Mutation_p.P511L|C8B_uc010ooo.1_Missense_Mutation_p.P521L	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	573	TSP type-1 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						CCCATTTTGAGGAGGTGGATT	0.488													21	44					0	0	0.001882	0	0
DAB1	1600	broad.mit.edu	37	1	57476931	57476931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:57476931G>A	uc001cys.1	-	15	2133	c.1459C>T	c.(1459-1461)CCT>TCT	p.P487S	DAB1_uc001cyt.1_Missense_Mutation_p.P485S|DAB1_uc001cyq.1_Missense_Mutation_p.P485S|DAB1_uc001cyr.1_Missense_Mutation_p.P401S|DAB1_uc009vzw.1_Missense_Mutation_p.P469S|DAB1_uc009vzx.1_Missense_Mutation_p.P487S	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	520					cell differentiation|nervous system development					skin(2)|ovary(1)	3						CTCTGTCTAGGGGCTGGGGTT	0.478													41	86					0	0	0.003214	0	0
DAB1	1600	broad.mit.edu	37	1	57536707	57536707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:57536707G>A	uc001cys.1	-	9	1260	c.586C>T	c.(586-588)CCT>TCT	p.P196S	DAB1_uc001cyt.1_Missense_Mutation_p.P196S|DAB1_uc001cyq.1_Intron|DAB1_uc001cyr.1_Intron|DAB1_uc009vzw.1_Intron|DAB1_uc009vzx.1_Missense_Mutation_p.P196S	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	196					cell differentiation|nervous system development					skin(2)|ovary(1)	3						TGGTACACAGGATCTTCAACA	0.433													42	93					0	0	0.002852	0	0
L1TD1	54596	broad.mit.edu	37	1	62672782	62672782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:62672782C>T	uc001dae.3	+	3	784	c.482C>T	c.(481-483)CCC>CTC	p.P161L		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	161										ovary(1)|skin(1)	2						aagaaattaccccagggtgaa	0													5	14					0	0	0.000602	0	0
NEGR1	257194	broad.mit.edu	37	1	72076757	72076757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:72076757C>T	uc001dfw.2	-	5	840	c.740G>A	c.(739-741)GGT>GAT	p.G247D	NEGR1_uc001dfv.2_Missense_Mutation_p.G119D|NEGR1_uc010oqs.1_Missense_Mutation_p.G203D	NM_173808	NP_776169	Q7Z3B1	NEGR1_HUMAN	neuronal growth regulator 1 precursor	247	Ig-like C2-type 3.				cell adhesion	anchored to membrane|plasma membrane				ovary(1)	1		all_cancers(4;1.26e-06)|Renal(4;1.32e-08)|all_epithelial(4;5.39e-07)|Hepatocellular(141;0.117)		KIRC - Kidney renal clear cell carcinoma(4;0.00529)|Kidney(4;0.00609)|all cancers(265;0.022)|GBM - Glioblastoma multiforme(62;0.0382)|Epithelial(280;0.242)		CACACCTGCACCTTCACATCT	0.453													31	79					0	0	0.002836	0	0
C1orf173	127254	broad.mit.edu	37	1	75078435	75078435	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:75078435G>A	uc001dgg.2	-	9	1278	c.1059C>T	c.(1057-1059)TTC>TTT	p.F353F	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Silent_p.F147F	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	353										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCCCATTCAGGAAAAAGGTGA	0.423													19	36					0	0	0.008871	0	0
C1orf173	127254	broad.mit.edu	37	1	75107095	75107095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:75107095G>A	uc001dgg.2	-	5	583	c.364C>T	c.(364-366)CCC>TCC	p.P122S		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	122										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GGTGGGTGGGGAGACAGGATT	0.418													20	42					0	0	0.008871	0	0
ASB17	127247	broad.mit.edu	37	1	76397911	76397911	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:76397911G>A	uc001dhe.1	-	1	206	c.66C>T	c.(64-66)CTC>CTT	p.L22L	ASB17_uc001dhf.1_RNA	NM_080868	NP_543144	Q8WXJ9	ASB17_HUMAN	ankyrin repeat and SOCS box-containing 17	22					intracellular signal transduction					ovary(1)	1						TTTTGTCAAGGAGATTGCAGA	0.358													21	54					0	0	0.001523	0	0
FAM73A	374986	broad.mit.edu	37	1	78309071	78309071	+	Silent	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:78309071T>C	uc001dhx.2	+	8	1007	c.975T>C	c.(973-975)GAT>GAC	p.D325D	FAM73A_uc010ork.1_Silent_p.D325D|FAM73A_uc010orl.1_Silent_p.D287D|FAM73A_uc001dhy.1_Silent_p.D114D	NM_198549	NP_940951	Q8NAN2	FA73A_HUMAN	hypothetical protein LOC374986	325						integral to membrane				ovary(1)	1				Colorectal(170;0.226)		CATCCACGGATTCCTTTGCTT	0.403													29	49					0	0	0.002836	0	0
PTGFR	5737	broad.mit.edu	37	1	78959101	78959101	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:78959101A>T	uc001din.2	+	2	939	c.673A>T	c.(673-675)ATT>TTT	p.I225F	PTGFR_uc001dim.2_Missense_Mutation_p.I225F	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	225	Cytoplasmic (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	AATCACAGGAATTACACTTTT	0.388													19	52					0	0	0.001523	0	0
GTF2B	2959	broad.mit.edu	37	1	89322963	89322963	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:89322963C>T	uc001dmo.3	-	6	862	c.743G>A	c.(742-744)AGG>AAG	p.R248K		NM_001514	NP_001505	Q00403	TF2B_HUMAN	general transcription factor IIB	248	2.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	nucleoplasm	thyroid hormone receptor binding|translation initiation factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0131)|Epithelial(280;0.0255)		GATGGGGCTCCTCCCAGGAAC	0.507													30	51					0	0	0.007291	0	0
LRRC8B	23507	broad.mit.edu	37	1	90048491	90048491	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:90048491G>A	uc001dni.2	+	7	789	c.282G>A	c.(280-282)CAG>CAA	p.Q94Q	LRRC8B_uc001dnh.2_Silent_p.Q94Q|LRRC8B_uc001dnj.2_Silent_p.Q94Q	NM_001134476	NP_001127948	Q6P9F7	LRC8B_HUMAN	leucine rich repeat containing 8 family, member	94						integral to membrane				ovary(2)	2		all_lung(203;0.17)		all cancers(265;0.00515)|Epithelial(280;0.0241)		TCCGAATTCAGAATGACCTCC	0.502													31	79					0	0	0.003271	0	0
TGFBR3	7049	broad.mit.edu	37	1	92200472	92200473	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:92200472_92200473GG>AA	uc001doh.2	-	5	894_895	c.428_429CC>TT	c.(427-429)TCC>TTT	p.S143F	TGFBR3_uc009wde.2_Intron|TGFBR3_uc010osy.1_Missense_Mutation_p.S101F|TGFBR3_uc001doi.2_Missense_Mutation_p.S143F|TGFBR3_uc001doj.2_Missense_Mutation_p.S143F	NM_003243	NP_003234	Q03167	TGBR3_HUMAN	transforming growth factor, beta receptor III	143	Extracellular (Potential).				BMP signaling pathway|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cell growth|cell migration|definitive erythrocyte differentiation|heart trabecula formation|immune response|intracellular protein kinase cascade|liver development|negative regulation of cellular component movement|negative regulation of epithelial cell proliferation|palate development|pathway-restricted SMAD protein phosphorylation|response to follicle-stimulating hormone stimulus|response to luteinizing hormone stimulus|response to prostaglandin E stimulus|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis	external side of plasma membrane|extracellular space|inhibin-betaglycan-ActRII complex|integral to plasma membrane|intracellular membrane-bounded organelle	coreceptor activity|heparin binding|PDZ domain binding|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type III|type II transforming growth factor beta receptor binding			ovary(3)	3		all_lung(203;0.00719)|Lung NSC(277;0.0268)		all cancers(265;0.0108)|Epithelial(280;0.0825)		CTGCTGTCAAGGAGAAGTTTGC	0.441													29	75					0	0	0.004672	0	0
DPYD	1806	broad.mit.edu	37	1	98058913	98058913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:98058913G>A	uc001drv.2	-	10	1126	c.989C>T	c.(988-990)TCG>TTG	p.S330L		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	330					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TCCCCGTATCGATGGCAATGG	0.478													32	71					0	0	0.003755	0	0
DPYD	1806	broad.mit.edu	37	1	98164976	98164976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:98164976G>A	uc001drv.2	-	6	748	c.611C>T	c.(610-612)TCC>TTC	p.S204F	DPYD_uc010oub.1_RNA	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	204					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	AGCCAAAAAGGAAGCACAACT	0.393													29	75					0	0	0.001786	0	0
COL11A1	1301	broad.mit.edu	37	1	103471818	103471818	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:103471818C>T	uc001dul.2	-	16	2055	c.1737G>A	c.(1735-1737)AGG>AGA	p.R579R	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Silent_p.R591R|COL11A1_uc001dun.2_Silent_p.R540R|COL11A1_uc009weh.2_Silent_p.R463R	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	579	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TAAGCCATACCCTTTTTCCAG	0.353													25	67					0	0	0.002096	0	0
NTNG1	22854	broad.mit.edu	37	1	107867320	107867320	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:107867320C>T	uc001dvh.3	+	3	1381	c.663C>T	c.(661-663)ATC>ATT	p.I221I	NTNG1_uc001dvf.3_Silent_p.I221I|NTNG1_uc010out.1_Silent_p.I221I|NTNG1_uc001dvc.3_Silent_p.I221I|NTNG1_uc001dvd.1_Silent_p.I221I	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	221	Laminin N-terminal.				axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		GCAAAATAATCCACTTTGAAA	0.423													17	53					0	0	0.004990	0	0
EPS8L3	79574	broad.mit.edu	37	1	110301965	110301965	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:110301965A>C	uc001dyr.1	-	5	445	c.300T>G	c.(298-300)AAT>AAG	p.N100K	EPS8L3_uc001dys.1_Missense_Mutation_p.N100K|EPS8L3_uc001dyq.1_Missense_Mutation_p.N100K|EPS8L3_uc009wfm.1_Missense_Mutation_p.N66K|EPS8L3_uc009wfn.1_Missense_Mutation_p.N66K|EPS8L3_uc009wfo.1_Missense_Mutation_p.N47K	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	100						cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		TGAGCGCCACATTCATGGCCT	0.597													161	125					0	0	0.003610	0	0
ALX3	257	broad.mit.edu	37	1	110604122	110604123	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:110604122_110604123CC>TT	uc001dzb.2	-	3	745_746	c.657_658GG>AA	c.(655-660)GAGGGG>GAAAGG	p.G220R		NM_006492	NP_006483	O95076	ALX3_HUMAN	aristaless-like homeobox 3	220						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(81;2.35e-05)|all_epithelial(167;7.69e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.015)|all cancers(265;0.0706)|Epithelial(280;0.0758)|Colorectal(144;0.113)|LUSC - Lung squamous cell carcinoma(189;0.135)		GGGTTCCGCCCCTCCTGGATCT	0.629													23	75					0	0	0.004672	0	0
KCNC4	3749	broad.mit.edu	37	1	110766203	110766203	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:110766203C>T	uc001dzh.2	+	2	1353	c.1296C>T	c.(1294-1296)GTC>GTT	p.V432V	KCNC4_uc001dzf.2_Silent_p.V432V|KCNC4_uc009wfr.2_Silent_p.V432V|KCNC4_uc001dzg.2_Silent_p.V432V|KCNC4_uc001dzi.2_RNA	NM_004978	NP_004969	Q03721	KCNC4_HUMAN	Shaw-related voltage-gated potassium channel	432					synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3		all_cancers(81;9.88e-06)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0238)|all cancers(265;0.0693)|Epithelial(280;0.0748)|Colorectal(144;0.112)|LUSC - Lung squamous cell carcinoma(189;0.135)		GGGCTGTGGTCACCATGACGA	0.607													44	96					0	0	0.003214	0	0
ADORA3	140	broad.mit.edu	37	1	112031474	112031474	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:112031474G>A	uc001ebf.2	-	3	1397	c.630C>T	c.(628-630)GCC>GCT	p.A210A	ADORA3_uc001ebg.3_Silent_p.A129A	NM_020683	NP_065734	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 1	Error:Variant_position_missing_in_P33765_after_alignment					activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	TGTCCCTCAGGGCCACATGAT	0.552													36	30					0	0	0.003755	0	0
AMPD1	270	broad.mit.edu	37	1	115218587	115218587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:115218587C>T	uc001efe.1	-	11	1510	c.1426G>A	c.(1426-1428)GGA>AGA	p.G476R	AMPD1_uc001eff.1_Missense_Mutation_p.G472R	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	476					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	AGCATTTTTCCAAAATGTGGA	0.428													73	73					0	0	0.003610	0	0
NRAS	4893	broad.mit.edu	37	1	115258747	115258747	+	Missense_Mutation	SNP	C	T	T	rs121913237		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:115258747C>T	uc009wgu.2	-	2	289	c.35G>A	c.(34-36)GGT>GAT	p.G12D		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	12	GTP.		G -> C (in leukemia).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.G12D(333)|p.G12S(118)|p.G12C(71)|p.G12V(54)|p.G12A(36)|p.G12R(16)|p.G12G(4)|p.G12N(1)|p.G12T(1)|p.G12P(1)|p.G12Y(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCCAACACCACCTGCTCCAAC	0.493	G12D(HEC151_ENDOMETRIUM)|G12D(KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(TYKNU_OVARY)|G12D(697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			63	65					0	0	0.003610	0	0
SYCP1	6847	broad.mit.edu	37	1	115453082	115453082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:115453082G>A	uc001efr.2	+	17	1594	c.1385G>A	c.(1384-1386)GGA>GAA	p.G462E	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.G462E|SYCP1_uc009wgw.2_Missense_Mutation_p.G462E	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	462	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GAATTAAAAGGAACAGAACAA	0.279													52	62					0	0	0.003610	0	0
SYCP1	6847	broad.mit.edu	37	1	115455695	115455695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:115455695C>T	uc001efr.2	+	19	1780	c.1571C>T	c.(1570-1572)TCA>TTA	p.S524L	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.S524L|SYCP1_uc009wgw.2_Missense_Mutation_p.S524L	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	524	Potential.			LTSHCNKLSLENK -> YFTLQQASPPPN (in Ref. 2; BAA22586).	cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AACAAGCTTTCACTAGAAAAC	0.239													45	136					0	0	0.003610	0	0
TTF2	8458	broad.mit.edu	37	1	117617646	117617646	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:117617646A>G	uc001egy.2	+	5	460	c.440A>G	c.(439-441)GAG>GGG	p.E147G	TTF2_uc001egx.1_Missense_Mutation_p.E147G	NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	147					mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		GGTGAAGGTGAGGAAAAGAAG	0.408													3	116					0	0	0.004672	0	0
SPAG17	200162	broad.mit.edu	37	1	118565958	118565958	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:118565958C>T	uc001ehk.2	-	28	4106	c.4038G>A	c.(4036-4038)ACG>ACA	p.T1346T		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1346						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CAGATGGTATCGTTTCTGATT	0.398													18	48					0	0	0.006122	0	0
SPAG17	200162	broad.mit.edu	37	1	118623749	118623749	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:118623749C>T	uc001ehk.2	-	15	2252	c.2184G>A	c.(2182-2184)AAG>AAA	p.K728K		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	728						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GGGGCTGAGCCTTCATGATGC	0.323													70	90					0	0	0.003610	0	0
TXNIP	10628	broad.mit.edu	37	1	145438945	145438945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:145438945C>T	uc001enn.3	+	1	484	c.143C>T	c.(142-144)GCT>GTT	p.A48V	NBPF10_uc001emp.3_Intron|TXNIP_uc001enm.1_Intron|TXNIP_uc010oys.1_5'Flank	NM_006472	NP_006463	Q9H3M7	TXNIP_HUMAN	thioredoxin interacting protein	48					cell cycle|keratinocyte differentiation|transcription, DNA-dependent		ubiquitin protein ligase binding			ovary(2)	2	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AGGATCCTGGCTTGCGGAGTG	0.547													38	66					0	0	0.007835	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145474341	145474341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:145474341C>T	uc001enq.1	+	4	2306	c.1013C>T	c.(1012-1014)CCA>CTA	p.P338L	NBPF10_uc001emp.3_Intron|LIX1L_uc001enr.2_5'Flank	NM_001039888	NP_001034977	Q69YU3	AN34A_HUMAN	ankyrin repeat domain 34	338	Pro-rich.										0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CGCATGGAGCCAGTGGAGCTG	0.652													8	44					0	0	0.003080	0	0
ITGA10	8515	broad.mit.edu	37	1	145541455	145541455	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:145541455C>T	uc001eoa.2	+	28	3319	c.3243C>T	c.(3241-3243)TCC>TCT	p.S1081S	NBPF10_uc001emp.3_Intron|ITGA10_uc010oyv.1_Silent_p.S950S|ITGA10_uc009wiw.2_Silent_p.S938S|ITGA10_uc010oyw.1_Silent_p.S988S	NM_003637	NP_003628	O75578	ITA10_HUMAN	integrin, alpha 10 precursor	1081	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity			lung(2)|ovary(2)|kidney(2)|large_intestine(1)|skin(1)	8	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AGTTCAAGTCCCTGACGGTGG	0.502													11	21					0	0	0.000978	0	0
LOC728989	728989	broad.mit.edu	37	1	146491186	146491186	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:146491186C>T	uc001epd.2	-	6	785	c.711G>A	c.(709-711)AAG>AAA	p.K237K		NR_024442				SubName: Full=cDNA FLJ59595, highly similar to Homo sapiens phosphodiesterase 4D interacting protein, transcript variant 1, mRNA;												0						GGCTGCACTTCTTGCATGGTT	0.502													12	24					0	0	0.000978	0	0
ACP6	51205	broad.mit.edu	37	1	147124277	147124277	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:147124277A>C	uc001epr.2	-	7	1320	c.856T>G	c.(856-858)TTG>GTG	p.L286V	ACP6_uc009wjj.1_3'UTR	NM_016361	NP_057445	Q9NPH0	PPA6_HUMAN	acid phosphatase 6, lysophosphatidic precursor	286					lipid metabolic process	extracellular region|mitochondrion	acid phosphatase activity|protein binding			ovary(4)	4	all_hematologic(923;0.0276)					AGTATGTACAAGGATGTGTCC	0.512													29	55					0	0	0.007291	0	0
GJA5	2702	broad.mit.edu	37	1	147231250	147231251	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:147231250_147231251GG>AA	uc001eps.1	-	2	237_238	c.96_97CC>TT	c.(94-99)TTCCGT>TTTTGT	p.R33C	GJA5_uc001ept.1_Missense_Mutation_p.R33C	NM_181703	NP_859054	P36382	CXA5_HUMAN	connexin 40	33	Helical; (Potential).				angiogenesis|cell-cell junction assembly|muscle contraction	integral to membrane				ovary(1)	1	all_hematologic(923;0.0276)		LUSC - Lung squamous cell carcinoma(543;0.202)			ACGAGCATACGGAATATGAAGA	0.55													39	63					0	0	0.004672	0	0
GJA8	2703	broad.mit.edu	37	1	147380211	147380211	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:147380211C>T	uc001epu.1	+	2	192	c.129C>T	c.(127-129)TTC>TTT	p.F43F		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	43	Helical; (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					CCGCAGAGTTCGTGTGGGGGG	0.592													18	87					0	0	0.008871	0	0
LOC645166	645166	broad.mit.edu	37	1	148932909	148932909	+	RNA	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:148932909C>T	uc010pbc.1	+	2		c.224C>T			LOC645166_uc010pbd.1_RNA|LOC645166_uc009wkw.1_RNA	NR_027355				Homo sapiens cDNA, FLJ18771.												0						GGCCAAGACTCCGTCCTGCAA	0.607													8	184					0	0	0.004482	0	0
ARNT	405	broad.mit.edu	37	1	150801696	150801696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:150801696C>T	uc001evr.1	-	12	1183	c.1040G>A	c.(1039-1041)AGT>AAT	p.S347N	ARNT_uc001evs.1_Missense_Mutation_p.S332N|ARNT_uc009wmb.1_Missense_Mutation_p.S333N|ARNT_uc009wmc.1_Missense_Mutation_p.S347N|ARNT_uc009wmd.1_Missense_Mutation_p.S332N|ARNT_uc009wme.1_Missense_Mutation_p.S347N|ARNT_uc010pcl.1_Missense_Mutation_p.S331N	NM_001668	NP_001659	P27540	ARNT_HUMAN	aryl hydrocarbon receptor nuclear translocator	347					positive regulation of hormone biosynthetic process|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|response to hypoxia		aryl hydrocarbon receptor binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity			skin(4)|lung(3)|central_nervous_system(1)|kidney(1)	9	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.02)|BRCA - Breast invasive adenocarcinoma(12;0.00606)|LUSC - Lung squamous cell carcinoma(543;0.211)			GTTGGGAGAACTAGTTACCTG	0.383			T	ETV6	AML								18	102					0	0	0.008871	0	0
BNIPL	149428	broad.mit.edu	37	1	151011442	151011442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:151011442G>A	uc001ewl.2	+	4	546	c.373G>A	c.(373-375)GAA>AAA	p.E125K	BNIPL_uc009wmi.2_Missense_Mutation_p.E43K|BNIPL_uc009wmj.2_RNA	NM_138278	NP_612122	Q7Z465	BNIPL_HUMAN	BCL2/adenovirus E1B 19kD interacting protein	125					apoptosis|induction of apoptosis|negative regulation of cell proliferation|regulation of growth rate	cytosol|nucleus	identical protein binding				0	Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GGAGATAGACGAATTGGAGAC	0.527													47	78					0	0	0.003610	0	0
TCHHL1	126637	broad.mit.edu	37	1	152057751	152057751	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:152057751G>A	uc001ezo.1	-	3	2472	c.2407C>T	c.(2407-2409)CAG>TAG	p.Q803*		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	803							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TGTAGGTACTGGTATAGTGGA	0.493													116	164					0	0	0.003610	0	0
TCHH	7062	broad.mit.edu	37	1	152086520	152086520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:152086520C>T	uc001ezp.2	-	1	37	c.37G>A	c.(37-39)GAA>AAA	p.E13K	TCHH_uc009wne.1_Missense_Mutation_p.E13K	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	13	S-100-like.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGAAAATTTCAGTGATGTCA	0.363													15	65					0	0	0.002450	0	0
RPTN	126638	broad.mit.edu	37	1	152129231	152129231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:152129231C>T	uc001ezs.1	-	3	409	c.344G>A	c.(343-345)GGA>GAA	p.G115E		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	115	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						GCCTGTGTTTCCTGGGAACTT	0.527													137	210					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152282971	152282971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:152282971C>T	uc001ezu.1	-	3	4427	c.4391G>A	c.(4390-4392)GGA>GAA	p.G1464E	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1464	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTTGTCTTCCTCCAGTGCT	0.567									Ichthyosis				81	301					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152283696	152283696	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:152283696C>T	uc001ezu.1	-	3	3702	c.3666G>A	c.(3664-3666)AAG>AAA	p.K1222K	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1222	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATTGTTTGTCCTTACGAGTTT	0.567									Ichthyosis				204	293					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152284451	152284451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:152284451G>A	uc001ezu.1	-	3	2947	c.2911C>T	c.(2911-2913)CGT>TGT	p.R971C	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	971	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCAGATCCACGATGGTTTCTG	0.577									Ichthyosis				190	310					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152329887	152329887	+	Silent	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:152329887A>G	uc001ezw.3	-	3	448	c.375T>C	c.(373-375)CAT>CAC	p.H125H	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	125							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AACCTGATTTATGTCCTGGTG	0.458													52	241					0	0	0.003610	0	0
LCE3D	84648	broad.mit.edu	37	1	152552221	152552221	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:152552221C>T	uc001fab.2	-	2	249	c.192G>A	c.(190-192)CGG>CGA	p.R64R		NM_032563	NP_115952	Q9BYE3	LCE3D_HUMAN	late cornified envelope 3D	64					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0323)|Kidney(5;0.0378)		GCCTCTGGCGCCGGCATCGGT	0.682													79	94					0	0	0.003610	0	0
LCE3D	84648	broad.mit.edu	37	1	152552341	152552341	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:152552341C>T	uc001fab.2	-	2	129	c.72G>A	c.(70-72)AAG>AAA	p.K24K		NM_032563	NP_115952	Q9BYE3	LCE3D_HUMAN	late cornified envelope 3D	24					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0323)|Kidney(5;0.0378)		GTACTGGGCTCTTTGGGGGAC	0.617													62	90					0	0	0.003610	0	0
KPRP	448834	broad.mit.edu	37	1	152732591	152732591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:152732591G>A	uc001fal.1	+	2	585	c.527G>A	c.(526-528)GGA>GAA	p.G176E		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	176	Gln-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CAGCCTCAGGGAAGATTCTCC	0.542													23	128					0	0	0.002780	0	0
SPRR4	163778	broad.mit.edu	37	1	152944417	152944417	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:152944417G>A	uc001fav.1	+	2	114	c.51G>A	c.(49-51)AGG>AGA	p.R17R		NM_173080	NP_775103	Q96PI1	SPRR4_HUMAN	small proline-rich protein 4	17	Gln-rich.				keratinization|peptide cross-linking	cell cortex					0	Lung NSC(65;1.46e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CACCCCAGAGGGCCCAGCAGC	0.488													55	93					0	0	0.003610	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153312912	153312912	+	Missense_Mutation	SNP	G	A	A	rs142296774		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:153312912G>A	uc001fbo.2	-	7	834	c.769C>T	c.(769-771)CGG>TGG	p.R257W	PGLYRP4_uc001fbp.2_Missense_Mutation_p.R253W	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	257					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGGATGTCCCGGACCAGCAGG	0.542													49	84					0	0	0.003610	0	0
S100A7A	338324	broad.mit.edu	37	1	153391683	153391683	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:153391683G>A	uc001fbt.1	+	3	261	c.204G>A	c.(202-204)AAG>AAA	p.K68K		NM_176823	NP_789793	Q86SG5	S1A7A_HUMAN	S100 calcium binding protein A7-like 1	68	2; high affinity (Potential).|EF-hand 2.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			ATGAGGATAAGAAGATTGATT	0.443													21	95					0	0	0.002299	0	0
C1orf43	25912	broad.mit.edu	37	1	154180059	154180059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:154180059G>A	uc001fei.2	-	7	1022	c.632C>T	c.(631-633)TCC>TTC	p.S211F	C1orf189_uc001fee.1_5'Flank|C1orf43_uc001fef.1_Missense_Mutation_p.S108F|C1orf43_uc001feg.2_Missense_Mutation_p.S177F|C1orf43_uc001feh.2_Missense_Mutation_p.S159F|C1orf43_uc001fej.2_Missense_Mutation_p.S193F|C1orf43_uc009wos.1_3'UTR	NM_001098616	NP_001092086	Q9BWL3	CA043_HUMAN	hypothetical protein LOC25912 isoform 3	211						integral to membrane	coenzyme binding|oxidoreductase activity				0	all_lung(78;1.98e-30)|Lung NSC(65;2.87e-28)|Hepatocellular(266;0.0877)					GACCTCAGGGGACTGAGTTAG	0.502													33	208					0	0	0.003755	0	0
PBXIP1	57326	broad.mit.edu	37	1	154918319	154918319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:154918319G>A	uc001ffr.2	-	10	1890	c.1831C>T	c.(1831-1833)CGG>TGG	p.R611W	PBXIP1_uc001ffs.2_Missense_Mutation_p.R582W|PBXIP1_uc010pep.1_Missense_Mutation_p.R456W	NM_020524	NP_065385	Q96AQ6	PBIP1_HUMAN	pre-B-cell leukemia homeobox interacting protein	611					cell differentiation|multicellular organismal development|negative regulation of transcription, DNA-dependent	cytosol|microtubule|nucleus	protein binding|transcription corepressor activity			large_intestine(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TCCTGTTGCCGCACTGGGGCT	0.627													27	98					0	0	0.006320	0	0
FLAD1	80308	broad.mit.edu	37	1	154956339	154956339	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:154956339C>T	uc001fgf.1	+	1	523	c.169C>T	c.(169-171)CTG>TTG	p.L57L	FLAD1_uc001fgc.2_5'UTR|FLAD1_uc001fgd.1_Silent_p.L57L|FLAD1_uc001fge.1_5'UTR|FLAD1_uc001fgg.1_5'UTR	NM_025207	NP_079483	Q8NFF5	FAD1_HUMAN	flavin adenine dinucleotide synthetase isoform	57					FAD biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|FMN adenylyltransferase activity			ovary(2)|skin(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CCAGGACCCCCTGTTCCCAGG	0.627													21	58					0	0	0.001523	0	0
GON4L	54856	broad.mit.edu	37	1	155784200	155784200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:155784200G>A	uc001flz.2	-	9	1299	c.1202C>T	c.(1201-1203)CCA>CTA	p.P401L	GON4L_uc001fly.1_Missense_Mutation_p.P401L|GON4L_uc009wrh.1_Missense_Mutation_p.P401L|GON4L_uc001fma.1_Missense_Mutation_p.P401L|GON4L_uc001fmc.2_Missense_Mutation_p.P401L|GON4L_uc001fmd.3_Missense_Mutation_p.P401L|GON4L_uc009wri.2_5'UTR|GON4L_uc001fme.2_Missense_Mutation_p.P229L|GON4L_uc001fmf.2_Missense_Mutation_p.P95L	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	401					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					TGCCCCACGTGGAGATGAAGC	0.413													32	137					0	0	0.003271	0	0
ROBLD3	28956	broad.mit.edu	37	1	156028139	156028139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:156028139C>T	uc001fnb.3	+	4	519	c.355C>T	c.(355-357)CTC>TTC	p.L119F	ROBLD3_uc010pgy.1_Missense_Mutation_p.L89F|RAB25_uc001fnc.2_5'Flank	NM_014017	NP_054736	Q9Y2Q5	LTOR2_HUMAN	roadblock domain-containing protein 3 isoform 1	119					cell growth|cellular protein localization|cellular response to amino acid stimulus|positive regulation of TOR signaling cascade	lysosomal membrane|Ragulator complex					0						GGAGGAGCCCCTCACCCAAGT	0.572													66	139					0	0	0.003610	0	0
SEMA4A	64218	broad.mit.edu	37	1	156146722	156146722	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:156146722G>A	uc001fnl.2	+	15	2324	c.2220G>A	c.(2218-2220)AAG>AAA	p.K740K	SEMA4A_uc009wrq.2_Silent_p.K740K|SEMA4A_uc001fnm.2_Silent_p.K740K|SEMA4A_uc001fnn.2_Silent_p.K608K|SEMA4A_uc001fno.2_Silent_p.K740K	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	740	Cytoplasmic (Potential).				axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					AGTCTCCCAAGGAATGCAGGA	0.617													28	57					0	0	0.002096	0	0
SMG5	23381	broad.mit.edu	37	1	156235791	156235791	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:156235791A>G	uc001foc.3	-	12	1785	c.1636T>C	c.(1636-1638)TCA>CCA	p.S546P	SMG5_uc009wrv.2_Missense_Mutation_p.S31P	NM_015327	NP_056142	Q9UPR3	SMG5_HUMAN	SMG5 homolog nonsense mediated mRNA decay	546					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|nucleus	protein phosphatase 2A binding			ovary(2)|skin(2)|pancreas(1)	5	Hepatocellular(266;0.158)					GGAGCCTCTGATCTGCCCCGA	0.577													10	64					0	0	0.001368	0	0
GPATCH4	54865	broad.mit.edu	37	1	156566271	156566271	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:156566271C>T	uc001fpm.2	-	6	388	c.349_splice	c.e6-1	p.M117_splice	APOA1BP_uc010php.1_Intron|GPATCH4_uc001fpl.2_Splice_Site_p.M112_splice	NM_015590	NP_056405	Q5T3I0	GPTC4_HUMAN	G patch domain containing 4 isoform 1							intracellular	nucleic acid binding			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					ATGTAGCCATCTAGGAGGGGT	0.507													74	119					0	0	0.003610	0	0
PEAR1	375033	broad.mit.edu	37	1	156874579	156874579	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:156874579C>T	uc001fqj.1	+	3	257	c.141C>T	c.(139-141)TTC>TTT	p.F47F	PEAR1_uc009wsl.1_5'Flank|PEAR1_uc001fqk.1_5'Flank	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	47	EMI.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCCGCCCCTTCAGCCTGCTCC	0.677													21	100					0	0	0.002780	0	0
PEAR1	375033	broad.mit.edu	37	1	156874588	156874588	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:156874588C>T	uc001fqj.1	+	3	266	c.150C>T	c.(148-150)CTC>CTT	p.L50L	PEAR1_uc009wsl.1_5'Flank|PEAR1_uc001fqk.1_5'Flank	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	50	EMI.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TCAGCCTGCTCCCCTCAGAGC	0.672													21	91					0	0	0.002299	0	0
FCRL5	83416	broad.mit.edu	37	1	157497595	157497595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:157497595C>T	uc001fqu.2	-	9	1930	c.1772G>A	c.(1771-1773)AGA>AAA	p.R591K	FCRL5_uc009wsm.2_Missense_Mutation_p.R591K|FCRL5_uc010phv.1_Missense_Mutation_p.R591K|FCRL5_uc010phw.1_Missense_Mutation_p.R506K	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	591	Extracellular (Potential).|Ig-like C2-type 6.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				GGGAGAGCCTCTCGGGGCCTC	0.602													46	77					0	0	0.003610	0	0
CD5L	922	broad.mit.edu	37	1	157804522	157804522	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:157804522G>A	uc001frk.3	-	4	536	c.393C>T	c.(391-393)TTC>TTT	p.F131F		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	131					apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GGACTGGGGAGAAAGAGCTCT	0.567													41	89					0	0	0.006230	0	0
OR10K2	391107	broad.mit.edu	37	1	158389833	158389833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:158389833G>A	uc010pii.1	-	1	824	c.824C>T	c.(823-825)TCA>TTA	p.S275L		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	275	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					GTAGGATACTGATATTAGAGC	0.383													60	97					0	0	0.003610	0	0
OR10K1	391109	broad.mit.edu	37	1	158435387	158435387	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:158435387C>T	uc010pij.1	+	1	36	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TGAGAGAGTTCGTCGTCCTCG	0.512													23	60					0	0	0.002780	0	0
OR10X1	128367	broad.mit.edu	37	1	158549127	158549127	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:158549127T>C	uc010pin.1	-	1	563	c.563A>G	c.(562-564)AAC>AGC	p.N188S		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	188	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TTTGACAAGGTTGGGTCTGCA	0.433													31	56					0	0	0.002445	0	0
OR10X1	128367	broad.mit.edu	37	1	158549611	158549611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:158549611C>T	uc010pin.1	-	1	79	c.79G>A	c.(79-81)GAA>AAA	p.E27K		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	27	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					AGAATGAATTCCTTCAGGATT	0.363													35	169					0	0	0.003271	0	0
SPTA1	6708	broad.mit.edu	37	1	158627344	158627344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:158627344C>T	uc001fst.1	-	19	2927	c.2728G>A	c.(2728-2730)GAA>AAA	p.E910K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	910	Spectrin 10.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GTTTCTGCTTCATGCAGGTCA	0.473													106	158					0	0	0.003610	0	0
PYHIN1	149628	broad.mit.edu	37	1	158911876	158911876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:158911876C>T	uc001ftb.2	+	5	934	c.689C>T	c.(688-690)TCC>TTC	p.S230F	PYHIN1_uc001ftc.2_Missense_Mutation_p.S221F|PYHIN1_uc001ftd.2_Missense_Mutation_p.S230F|PYHIN1_uc001fte.2_Missense_Mutation_p.S221F	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	230	HIN-200.				cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					AAATATGAATCCTCAGAAAAT	0.383													24	53					0	0	0.003954	0	0
AIM2	9447	broad.mit.edu	37	1	159033386	159033386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:159033386C>T	uc001ftj.1	-	5	1140	c.895G>A	c.(895-897)GAG>AAG	p.E299K		NM_004833	NP_004824	O14862	AIM2_HUMAN	absent in melanoma 2	299	HIN-200.				cellular response to drug|immune response|interleukin-1 beta secretion	mitochondrion|nucleus				ovary(2)|pancreas(1)	3	all_hematologic(112;0.0429)					ATTGTGTCCTCGTTTCTAACC	0.368													49	244					0	0	0.003610	0	0
OR10J5	127385	broad.mit.edu	37	1	159504995	159504995	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:159504995T>G	uc010piw.1	-	1	803	c.803A>C	c.(802-804)GAA>GCA	p.E268A		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					AAGGTCTTTTTCTATTGAACT	0.483													21	70					0	0	0.001882	0	0
CRP	1401	broad.mit.edu	37	1	159683466	159683467	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:159683466_159683467CC>TT	uc001ftw.2	-	2	627_628	c.523_524GG>AA	c.(523-525)GGA>AAA	p.G175K	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_RNA	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	175	Pentaxin.				acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	GTTCACATTTCCAATGTCTCCC	0.535													78	274					0	0	0.004672	0	0
FCRL6	343413	broad.mit.edu	37	1	159785397	159785397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:159785397G>A	uc001fud.3	+	10	1293	c.1251G>A	c.(1249-1251)ATG>ATA	p.M417I	FCRL6_uc001fuc.2_3'UTR|FCRL6_uc009wsz.1_3'UTR|FCRL6_uc009wta.2_3'UTR	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	417	Cytoplasmic (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					AGGTGAATATGAGAAGCAGGA	0.537													28	96					0	0	0.006320	0	0
CD84	8832	broad.mit.edu	37	1	160523816	160523817	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:160523816_160523817GG>AA	uc001fwh.3	-	3	532_533	c.508_509CC>TT	c.(508-510)CCC>TTC	p.P170F	CD84_uc001fwf.3_Missense_Mutation_p.P170F|CD84_uc001fwg.3_Missense_Mutation_p.P170F|CD84_uc009wtn.2_Missense_Mutation_p.P170F|CD84_uc001fwi.3_Missense_Mutation_p.P56F|CD84_uc001fwj.2_Missense_Mutation_p.P170F|CD84_uc001fwk.2_Missense_Mutation_p.P170F	NM_003874	NP_003865	Q9UIB8	SLAF5_HUMAN	CD84 molecule	170	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|defense response|homophilic cell adhesion|leukocyte migration	integral to plasma membrane	receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(52;3.62e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			TTCTCCCAGGGGACTCCAATTG	0.446													30	133					0	0	0.004672	0	0
ITLN2	142683	broad.mit.edu	37	1	160920382	160920382	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:160920382G>A	uc001fxd.2	-	5	619	c.561C>T	c.(559-561)TTC>TTT	p.F187F	ITLN2_uc009wts.2_Silent_p.F186F|ITLN2_uc010pju.1_Silent_p.F104F	NM_080878	NP_543154	Q8WWU7	ITLN2_HUMAN	intelectin 2 precursor	187	Fibrinogen C-terminal.				signal transduction	extracellular region	receptor binding|sugar binding			ovary(1)	1	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GTCTCTGGAGGAAGCCAGTGT	0.567													78	129					0	0	0.003610	0	0
PFDN2	5202	broad.mit.edu	37	1	161071905	161071905	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:161071905A>C	uc001fxu.2	-	3	271	c.221T>G	c.(220-222)GTT>GGT	p.V74G		NM_012394	NP_036526	Q9UHV9	PFD2_HUMAN	prefoldin subunit 2	74					'de novo' posttranslational protein folding	prefoldin complex	unfolded protein binding				0	all_cancers(52;1.84e-19)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			CACTCCTCCAACCATGCGGTA	0.493													16	98					0	0	0.004990	0	0
FCGR2B	2213	broad.mit.edu	37	1	161642805	161642805	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:161642805G>A	uc001gaz.1	+	4	524	c.432G>A	c.(430-432)GAG>GAA	p.E144E	FCGR2B_uc009wum.1_Silent_p.E144E|FCGR2B_uc001gay.1_Silent_p.E143E|FCGR2B_uc001gba.1_Silent_p.E143E|FCGR2B_uc001gbb.1_Silent_p.E144E|FCGR2B_uc009wun.1_Silent_p.E137E	NM_004001	NP_003992	P31994	FCG2B_HUMAN	Fc fragment of IgG, low affinity IIb, receptor	144	Ig-like C2-type 2.|Extracellular (Potential).				immune response|interspecies interaction between organisms|regulation of immune response	integral to membrane|plasma membrane	IgG binding|receptor activity				0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	AGTTCCAGGAGGGAGAAACCA	0.547			T	?	ALL								8	19					0	0	0.001855	0	0
DUSP27	92235	broad.mit.edu	37	1	167088601	167088601	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:167088601C>T	uc001geb.1	+	4	553	c.553C>T	c.(553-555)CAG>TAG	p.Q185*		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	185					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						CCTGGAGATCCAGTACCTGGG	0.562													21	48					0	0	0.002780	0	0
DUSP27	92235	broad.mit.edu	37	1	167096589	167096589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:167096589G>A	uc001geb.1	+	5	2221	c.2221G>A	c.(2221-2223)GAA>AAA	p.E741K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	741					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GAAGCAAAATGAAATGCTGCT	0.537													34	62					0	0	0.006230	0	0
DUSP27	92235	broad.mit.edu	37	1	167097729	167097729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:167097729C>T	uc001geb.1	+	5	3361	c.3361C>T	c.(3361-3363)CGG>TGG	p.R1121W		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	1121					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GTCCCAGTATCGGAGAAGCAC	0.517													24	32					0	0	0.002780	0	0
DPT	1805	broad.mit.edu	37	1	168698368	168698368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:168698368C>T	uc001gfp.2	-	1	61	c.45G>A	c.(43-45)ATG>ATA	p.M15I		NM_001937	NP_001928	Q07507	DERM_HUMAN	dermatopontin precursor	15					cell adhesion	extracellular space|proteinaceous extracellular matrix				ovary(1)	1	all_hematologic(923;0.208)					GGCCCCAGGCCATGGTGACTA	0.512													9	37					0	0	0.004482	0	0
F5	2153	broad.mit.edu	37	1	169529805	169529805	+	Silent	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:169529805A>C	uc001ggg.1	-	4	718	c.573T>G	c.(571-573)CTT>CTG	p.L191L	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	191	F5/8 type A 1.|Plastocyanin-like 1.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TTTTACAGATAAGCAGGGGCC	0.473													26	130					0	0	0.003954	0	0
SCYL3	57147	broad.mit.edu	37	1	169833638	169833638	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:169833638T>A	uc001ggs.2	-	9	1025	c.827A>T	c.(826-828)GAC>GTC	p.D276V	SCYL3_uc010plw.1_5'UTR|SCYL3_uc001ggt.2_Missense_Mutation_p.D276V|SCYL3_uc001ggu.2_RNA	NM_181093	NP_851607	Q8IZE3	PACE1_HUMAN	SCY1-like 3 isoform 2	276					cell migration	Golgi apparatus|lamellipodium	ATP binding|protein binding|protein kinase activity			ovary(1)|skin(1)	2	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GCTGACTCTGTCCAGCAGAAA	0.458													36	52					0	0	0.003271	0	0
FMO3	2328	broad.mit.edu	37	1	171080037	171080037	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:171080037C>T	uc001ghi.2	+	6	837	c.726C>T	c.(724-726)TTC>TTT	p.F242F	FMO3_uc001ghh.2_Silent_p.F242F|FMO3_uc010pmb.1_Silent_p.F222F|FMO3_uc010pmc.1_Silent_p.F179F	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	242					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TTGGAACCTTCCTCAAGAACA	0.473													27	176					0	0	0.004656	0	0
DNM3	26052	broad.mit.edu	37	1	172292470	172292470	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:172292470G>C	uc001gie.2	+	17	2059	c.1883G>C	c.(1882-1884)GGG>GCG	p.G628A	DNM3_uc001gif.2_Intron	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						CATGCATAGGGGAACAACAAA	0.408													10	13					0	0	0.001855	0	0
SERPINC1	462	broad.mit.edu	37	1	173873052	173873052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:173873052C>T	uc001gjt.2	-	7	1489	c.1370G>A	c.(1369-1371)AGA>AAA	p.R457K		NM_000488	NP_000479	P01008	ANT3_HUMAN	serpin peptidase inhibitor, clade C, member 1	457			R -> T (in AT3D; type-II).		blood coagulation|regulation of proteolysis	extracellular space|plasma membrane	heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(1)	1					Enoxaparin(DB01225)|Fondaparinux sodium(DB00569)|Heparin(DB01109)	GTTGGCTACTCTGCCCATGAA	0.398													14	72					0	0	0.001855	0	0
CACYBP	27101	broad.mit.edu	37	1	174977763	174977763	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:174977763C>T	uc001gkj.1	+	5	876	c.451C>T	c.(451-453)CTT>TTT	p.L151F	CACYBP_uc001gki.1_Missense_Mutation_p.L108F	NM_014412	NP_055227	Q9HB71	CYBP_HUMAN	calcyclin binding protein isoform 1	151	Interaction with SKP1.|CS.					beta-catenin destruction complex	protein homodimerization activity				0						TGATACAGTTCTTATATTGTG	0.333													24	74					0	0	0.003954	0	0
TNN	63923	broad.mit.edu	37	1	175113555	175113555	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:175113555T>C	uc001gkl.1	+	18	3741	c.3628T>C	c.(3628-3630)TTT>CTT	p.F1210L		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1210	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		TGGATGGAAGTTTACAACTTT	0.507													41	167					0	0	0.002222	0	0
TNR	7143	broad.mit.edu	37	1	175355281	175355282	+	Missense_Mutation	DNP	GG	AA	AA	rs138742753		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:175355281_175355282GG>AA	uc001gkp.1	-	6	1744_1745	c.1663_1664CC>TT	c.(1663-1665)CCC>TTC	p.P555F	TNR_uc009wwu.1_Missense_Mutation_p.P555F	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	555	Fibronectin type-III 3.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TTGGCTCAGGGGAGGCTGCAGC	0.604													13	75					0	0	0.004672	0	0
TNR	7143	broad.mit.edu	37	1	175362936	175362936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:175362936C>T	uc001gkp.1	-	4	1417	c.1336G>A	c.(1336-1338)GAA>AAA	p.E446K	TNR_uc009wwu.1_Missense_Mutation_p.E446K|TNR_uc010pmz.1_3'UTR	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	446	Fibronectin type-III 2.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AAGCTGATTTCCCACCCATCG	0.473													110	196					0	0	0.003610	0	0
TNR	7143	broad.mit.edu	37	1	175375428	175375428	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:175375428G>A	uc001gkp.1	-	1	504	c.423C>T	c.(421-423)ATC>ATT	p.I141I	TNR_uc009wwu.1_Silent_p.I141I|TNR_uc010pmz.1_Silent_p.I141I	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	141	Potential.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CCAGCATCTCGATCCGGCTCA	0.597													26	86					0	0	0.003954	0	0
PAPPA2	60676	broad.mit.edu	37	1	176526002	176526002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:176526002G>A	uc001gkz.2	+	2	1708	c.544G>A	c.(544-546)GAA>AAA	p.E182K	PAPPA2_uc001gky.1_Missense_Mutation_p.E182K|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	182					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						AACCCTGAACGAACCCAAACC	0.587													43	151					0	0	0.002222	0	0
PAPPA2	60676	broad.mit.edu	37	1	176760567	176760567	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:176760567C>T	uc001gkz.2	+	19	6133	c.4969C>T	c.(4969-4971)CCC>TCC	p.P1657S	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1657	Poly-Pro.|Sushi 5.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCCACCACCCCCCTCAGAGCT	0.428													22	68					0	0	0.003330	0	0
TDRD5	163589	broad.mit.edu	37	1	179562664	179562664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:179562664G>A	uc001gnf.1	+	3	552	c.302G>A	c.(301-303)CGA>CAA	p.R101Q	TDRD5_uc010pnp.1_Missense_Mutation_p.R101Q	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	101					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						CATAAGCTTCGAAACTCAATG	0.433													8	57					0	0	0.004482	0	0
KIAA1614	57710	broad.mit.edu	37	1	180885453	180885453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:180885453G>A	uc001gok.2	+	2	281	c.214G>A	c.(214-216)GTA>ATA	p.V72I		NM_020950	NP_066001	Q5VZ46	K1614_HUMAN	hypothetical protein LOC57710	72										ovary(3)|skin(1)	4						GCCTCCCAGGGTATGGGGAGT	0.602													13	43					0	0	0.001368	0	0
ZNF648	127665	broad.mit.edu	37	1	182026903	182026903	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:182026903G>A	uc001goz.2	-	2	451	c.243C>T	c.(241-243)TTC>TTT	p.F81F		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	81					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGGAGTCAGAGAATTTCTCTT	0.567													22	93					0	0	0.001523	0	0
FAM5C	339479	broad.mit.edu	37	1	190130018	190130018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:190130018C>T	uc001gse.1	-	7	1196	c.964G>A	c.(964-966)GAA>AAA	p.E322K	FAM5C_uc010pot.1_Missense_Mutation_p.E220K	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	322						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AACTTGAATTCATCTGAAAAA	0.274													59	72					0	0	0.003610	0	0
RGS18	64407	broad.mit.edu	37	1	192153488	192153488	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:192153488A>C	uc001gsg.2	+	5	688	c.512A>C	c.(511-513)CAC>CCC	p.H171P		NM_130782	NP_570138	Q9NS28	RGS18_HUMAN	regulator of G-protein signalling 18	171	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)	3						CCTACCCTCCACAGTTTTGAT	0.363													20	66					0	0	0.002299	0	0
TROVE2	6738	broad.mit.edu	37	1	193038753	193038753	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:193038753C>A	uc001gss.2	+	2	744	c.569C>A	c.(568-570)CCT>CAT	p.P190H	TROVE2_uc001gst.1_Intron|TROVE2_uc001gsu.1_Intron|TROVE2_uc001gsv.1_Missense_Mutation_p.P190H|TROVE2_uc001gsw.2_Missense_Mutation_p.P190H|TROVE2_uc009wyp.2_Missense_Mutation_p.P190H|TROVE2_uc009wyq.2_Missense_Mutation_p.P190H|TROVE2_uc001gsx.1_Missense_Mutation_p.P190H	NM_004600	NP_004591	P10155	RO60_HUMAN	TROVE domain family, member 2 isoform 2	190	TROVE.				transcription from RNA polymerase III promoter	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|RNA binding				0						CATCTTAAACCTTCCAGTGAA	0.363													17	70					4.7546e-09	5.32859e-09	0.004007	1	0
KCNT2	343450	broad.mit.edu	37	1	196227595	196227595	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:196227595C>T	uc001gtd.1	-	26	3000	c.2940G>A	c.(2938-2940)TGG>TGA	p.W980*	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Nonsense_Mutation_p.W913*|KCNT2_uc001gtf.1_Nonsense_Mutation_p.W956*|KCNT2_uc001gtg.1_RNA|KCNT2_uc001gth.1_Nonsense_Mutation_p.W484*	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	980	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TGGTGTCTTCCCACTCTTCTA	0.388													40	85					0	0	0.002222	0	0
CFHR1	3078	broad.mit.edu	37	1	196794623	196794623	+	Silent	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:196794623T>C	uc001gtn.2	+	2	189	c.75T>C	c.(73-75)TTT>TTC	p.F25F	CFHR1_uc001gtm.2_Intron	NM_002113	NP_002104	Q03591	FHR1_HUMAN	complement factor H-related 1 precursor	25	Sushi 1.				complement activation	extracellular space					0						TTTGTGATTTTCCAAAAATAA	0.269													6	47					0	0	0.003080	0	0
CFHR5	81494	broad.mit.edu	37	1	196952101	196952101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:196952101G>A	uc001gts.3	+	2	273	c.145G>A	c.(145-147)GAA>AAA	p.E49K		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	49	Sushi 1.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						TCCTACAGGGGAAGTTTTCTA	0.373													48	80					0	0	0.003610	0	0
CFHR5	81494	broad.mit.edu	37	1	196953238	196953238	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:196953238G>A	uc001gts.3	+	3	529	c.401G>A	c.(400-402)TGG>TAG	p.W134*		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	134	Sushi 2.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						GAACGGGGCTGGTCCACTCCT	0.348													8	75					0	0	0.004482	0	0
CFHR5	81494	broad.mit.edu	37	1	196967406	196967406	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:196967406G>A	uc001gts.3	+	7	1247	c.1119G>A	c.(1117-1119)GGG>GGA	p.G373G		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	373	Sushi 6.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						GTATAAACGGGAAATGGAATC	0.308													13	57					0	0	0.003163	0	0
CFHR5	81494	broad.mit.edu	37	1	196973903	196973903	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:196973903C>T	uc001gts.3	+	9	1571	c.1443C>T	c.(1441-1443)TTC>TTT	p.F481F		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	481	Sushi 8.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						GCCAGTCCTTCTATAAACTCC	0.443													51	61					0	0	0.003610	0	0
ZBTB41	360023	broad.mit.edu	37	1	197147566	197147566	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:197147566G>A	uc001gtx.1	-	6	1822	c.1753C>T	c.(1753-1755)CGT>TGT	p.R585C	ZBTB41_uc009wyz.1_RNA	NM_194314	NP_919290	Q5SVQ8	ZBT41_HUMAN	zinc finger and BTB domain containing 41	585	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						CTTCCATGACGAAAACTTTGC	0.299													12	75					0	0	0.002450	0	0
CRB1	23418	broad.mit.edu	37	1	197446994	197446994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:197446994G>A	uc001gtz.2	+	12	4341	c.4206G>A	c.(4204-4206)ATG>ATA	p.M1402I	CRB1_uc010poz.1_Missense_Mutation_p.M1378I|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.M1290I|CRB1_uc010ppb.1_Missense_Mutation_p.M866I|CRB1_uc010ppd.1_Missense_Mutation_p.M883I	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1402	Cytoplasmic (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CCCCTGCAATGGAGAGACTGA	0.522													45	84					0	0	0.003610	0	0
PTPRC	5788	broad.mit.edu	37	1	198703464	198703464	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:198703464G>A	uc001gur.1	+	22	2361	c.2181G>A	c.(2179-2181)AGG>AGA	p.R727R	PTPRC_uc001gus.1_Silent_p.R679R|PTPRC_uc001gut.1_Silent_p.R566R|PTPRC_uc010ppg.1_Silent_p.R663R	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	727	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						TAGGTCCCAGGGATGAAACTG	0.338													150	583					0	0	0.003610	0	0
KIF14	9928	broad.mit.edu	37	1	200555350	200555350	+	Silent	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:200555350T>C	uc010ppk.1	-	19	3559	c.3120A>G	c.(3118-3120)TTA>TTG	p.L1040L	KIF14_uc010ppj.1_Silent_p.L549L	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	1040	Potential.|Required for CIT-binding.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						TATGGTCTTCTAAAGCCTAAT	0.308													41	159					0	0	0.003610	0	0
KIF21B	23046	broad.mit.edu	37	1	200960078	200960078	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:200960078G>A	uc001gvs.1	-	18	2971	c.2654C>T	c.(2653-2655)CCT>CTT	p.P885L	KIF21B_uc001gvr.1_Missense_Mutation_p.P885L|KIF21B_uc009wzl.1_Missense_Mutation_p.P885L|KIF21B_uc010ppn.1_Missense_Mutation_p.P885L	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	885					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						AGTGGGCGCAGGATGGTCCCC	0.637													64	91					0	0	0.003610	0	0
LGR6	59352	broad.mit.edu	37	1	202287257	202287257	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:202287257C>T	uc001gxu.2	+	18	1826	c.1826C>T	c.(1825-1827)ACC>ATC	p.T609I	LGR6_uc001gxv.2_Missense_Mutation_p.T557I|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Missense_Mutation_p.T470I	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	609	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						GGCGCCAACACCTTGACTGGC	0.622													19	83					0	0	0.007413	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204438184	204438185	+	Missense_Mutation	DNP	CA	AC	AC			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:204438184_204438185CA>AC	uc001haw.2	-	3	1225_1226	c.746_747TG>GT	c.(745-747)TTG>TGT	p.L249C	PIK3C2B_uc010pqv.1_Missense_Mutation_p.L249C|PIK3C2B_uc001hax.1_Missense_Mutation_p.L249C|PIK3C2B_uc009xbd.1_RNA	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	249	Interaction with GRB2.				cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			TGGCATCCCGCAACATCTCCGC	0.579													92	379					0	0	0.004672	0	0
RASSF5	83593	broad.mit.edu	37	1	206711522	206711522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:206711522C>T	uc001hed.2	+	2	536	c.479C>T	c.(478-480)CCA>CTA	p.P160L	RASSF5_uc001hec.1_Missense_Mutation_p.P160L|RASSF5_uc001hee.2_Missense_Mutation_p.P160L	NM_182663	NP_872604	Q8WWW0	RASF5_HUMAN	Ras association (RalGDS/AF-6) domain family 5	160	Phorbol-ester/DAG-type.				apoptosis|intracellular signal transduction	cytoplasm|microtubule	metal ion binding|protein binding			ovary(1)	1	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			ACCTGTCACCCAGAATGCCGC	0.532													30	173					0	0	0.001786	0	0
PIGR	5284	broad.mit.edu	37	1	207110943	207110943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:207110943C>T	uc001hez.2	-	4	726	c.542G>A	c.(541-543)GGT>GAT	p.G181D	PIGR_uc009xbz.2_Missense_Mutation_p.G181D	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	181	Ig-like V-type 2.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						ATTTACATAACCACTGGAGTC	0.473													11	44					0	0	0.008291	0	0
PFKFB2	5208	broad.mit.edu	37	1	207236759	207236759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:207236759C>T	uc001hfg.2	+	6	552	c.443C>T	c.(442-444)TCC>TTC	p.S148F	PFKFB2_uc010psc.1_Missense_Mutation_p.S50F|PFKFB2_uc001hfh.2_Missense_Mutation_p.S148F|PFKFB2_uc009xcc.2_Missense_Mutation_p.S106F|PFKFB2_uc010psd.1_5'Flank	NM_006212	NP_006203	O60825	F262_HUMAN	6-phosphofructo-2-kinase/fructose-2,	148	6-phosphofructo-2-kinase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity			ovary(1)	1	Prostate(682;0.19)					GAACAGAATTCCTTCAAGGTA	0.483													12	29					0	0	0.001855	0	0
C4BPB	725	broad.mit.edu	37	1	207269908	207269908	+	Missense_Mutation	SNP	G	A	A	rs75563598		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:207269908G>A	uc001hfj.2	+	5	581	c.451G>A	c.(451-453)GAA>AAA	p.E151K	C4BPB_uc001hfi.2_Missense_Mutation_p.E150K|C4BPB_uc001hfk.2_Missense_Mutation_p.E150K|C4BPB_uc001hfl.2_Missense_Mutation_p.E151K|C4BPB_uc009xcd.2_Missense_Mutation_p.E202K|C4BPB_uc001hfm.2_Missense_Mutation_p.E151K	NM_001017365	NP_001017365	P20851	C4BPB_HUMAN	complement component 4 binding protein, beta	151	Sushi 3.				blood coagulation|complement activation, classical pathway|innate immune response	extracellular region				ovary(1)	1						TGGCTATTTTGAAGGAAATAA	0.468													23	80					0	0	0.002780	0	0
C4BPB	725	broad.mit.edu	37	1	207273196	207273196	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:207273196G>A	uc001hfj.2	+	7	811	c.681G>A	c.(679-681)AAG>AAA	p.K227K	C4BPB_uc001hfi.2_Silent_p.K226K|C4BPB_uc001hfk.2_Silent_p.K226K|C4BPB_uc001hfl.2_Silent_p.K227K|C4BPB_uc009xcd.2_Silent_p.K278K|C4BPB_uc001hfm.2_Silent_p.K227K	NM_001017365	NP_001017365	P20851	C4BPB_HUMAN	complement component 4 binding protein, beta	227					blood coagulation|complement activation, classical pathway|innate immune response	extracellular region				ovary(1)	1						AACAATTAAAGGAAAGTGGCA	0.393													26	139					0	0	0.006320	0	0
CR1	1378	broad.mit.edu	37	1	207782974	207782974	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:207782974A>C	uc001hfy.2	+	29	5026	c.4886A>C	c.(4885-4887)CAC>CCC	p.H1629P	CR1_uc009xcl.1_Missense_Mutation_p.H1179P|CR1_uc001hfx.2_Missense_Mutation_p.H2079P	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1629	Extracellular (Potential).|Sushi 25.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						GTAGGGTCCCACACTGTGCAG	0.522													4	26					0	0	0.000602	0	0
LAMB3	3914	broad.mit.edu	37	1	209791870	209791870	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:209791870C>T	uc001hhg.2	-	18	3226	c.2836G>A	c.(2836-2838)GAC>AAC	p.D946N	LAMB3_uc009xco.2_Missense_Mutation_p.D946N|LAMB3_uc001hhh.2_Missense_Mutation_p.D946N	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	946	Domain I.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		AGCACCAAGTCCACGTTGGGG	0.617													48	84					0	0	0.003610	0	0
USH2A	7399	broad.mit.edu	37	1	215824000	215824000	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:215824000C>T	uc001hku.1	-	65	14664	c.14277G>A	c.(14275-14277)GGG>GGA	p.G4759G		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4759	Fibronectin type-III 33.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CGTTGGGCTTCCCAGGGGCAC	0.587										HNSCC(13;0.011)			39	160					0	0	0.002852	0	0
USH2A	7399	broad.mit.edu	37	1	215847887	215847887	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:215847887C>A	uc001hku.1	-	63	13753	c.13366G>T	c.(13366-13368)GGC>TGC	p.G4456C		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4456	Fibronectin type-III 30.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GATTCTGAGCCTGTGACTTGC	0.473										HNSCC(13;0.011)			81	129					6.86016e-32	7.7268e-32	0.003610	1	0
USH2A	7399	broad.mit.edu	37	1	216052194	216052194	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:216052194C>A	uc001hku.1	-	42	8857	c.8470G>T	c.(8470-8472)GTT>TTT	p.V2824F		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2824	Extracellular (Potential).|Fibronectin type-III 15.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AATGGGCCAACATTCTGAGGT	0.468										HNSCC(13;0.011)			17	79					1.99824e-07	2.23668e-07	0.004990	1	0
USH2A	7399	broad.mit.edu	37	1	216052207	216052207	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:216052207G>A	uc001hku.1	-	42	8844	c.8457C>T	c.(8455-8457)ACC>ACT	p.T2819T		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2819	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TCTGAGGTACGGTGGGGTGAG	0.453										HNSCC(13;0.011)			37	63					0	0	0.004289	0	0
USH2A	7399	broad.mit.edu	37	1	216424272	216424272	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:216424272G>A	uc001hku.1	-	12	2527	c.2140C>T	c.(2140-2142)CAG>TAG	p.Q714*	USH2A_uc001hkv.2_Nonsense_Mutation_p.Q714*	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	714	Laminin EGF-like 4.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CACTTGCACTGGCCTGAATTT	0.408										HNSCC(13;0.011)			12	48					0	0	0.001855	0	0
USH2A	7399	broad.mit.edu	37	1	216465577	216465577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:216465577G>A	uc001hku.1	-	10	2167	c.1780C>T	c.(1780-1782)CCT>TCT	p.P594S	USH2A_uc001hkv.2_Missense_Mutation_p.P594S	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	594	Laminin EGF-like 2.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGCTCAAAAGGAAATGGGTCT	0.433										HNSCC(13;0.011)			25	129					0	0	0.005443	0	0
EPRS	2058	broad.mit.edu	37	1	220162035	220162035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:220162035G>A	uc001hly.1	-	19	2942	c.2672C>T	c.(2671-2673)TCT>TTT	p.S891F	EPRS_uc010puf.1_Missense_Mutation_p.S642F|EPRS_uc001hlz.1_Missense_Mutation_p.S898F	NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	891	3 X 57 AA approximate repeats.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	AGCAGGTTCAGAATTTCTGGT	0.433													66	103					0	0	0.003610	0	0
RAB3GAP2	25782	broad.mit.edu	37	1	220344458	220344458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:220344458G>A	uc010puk.1	-	24	2746	c.2582C>T	c.(2581-2583)TCC>TTC	p.S861F	RAB3GAP2_uc001hmf.2_RNA|RAB3GAP2_uc001hmg.2_Missense_Mutation_p.S441F	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic	861					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		AACTGTTTGGGAAAACTAATA	0.408													25	57					0	0	0.003330	0	0
MOSC1	64757	broad.mit.edu	37	1	220971337	220971337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:220971337G>A	uc001hms.2	+	4	982	c.734G>A	c.(733-735)GGA>GAA	p.G245E	MOSC1_uc001hmt.2_Missense_Mutation_p.G245E	NM_022746	NP_073583	Q5VT66	MOSC1_HUMAN	MOCO sulphurase C-terminal domain containing 1	245	MOSC.						molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.0358)		GTAATTTCAGGATGCGATGTC	0.423													54	215					0	0	0.003610	0	0
MIA3	375056	broad.mit.edu	37	1	222826654	222826654	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:222826654G>C	uc001hnl.2	+	15	4303	c.4294G>C	c.(4294-4296)GAT>CAT	p.D1432H	MIA3_uc009xea.1_Missense_Mutation_p.D1209H|MIA3_uc001hnm.2_Missense_Mutation_p.D310H	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	1432	Cytoplasmic (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		AAATGATTCAGATGAATTAGC	0.413													180	297					0	0	0.003610	0	0
WNT3A	89780	broad.mit.edu	37	1	228210554	228210554	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:228210554G>A	uc001hrq.1	+	2	336	c.258G>A	c.(256-258)TGG>TGA	p.W86*	WNT3A_uc001hrp.1_Nonsense_Mutation_p.W86*	NM_033131	NP_149122	P56704	WNT3A_HUMAN	wingless-type MMTV integration site family,	86					axis specification|cell proliferation in forebrain|cell-cell signaling|cellular response to retinoic acid|convergent extension|dermatome development|dorsal/ventral neural tube patterning|embryonic pattern specification|extracellular matrix organization|hemopoietic stem cell proliferation|hippocampus development|inner ear morphogenesis|mammary gland development|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of neuron projection development|notochord development|palate development|paraxial mesodermal cell fate commitment|positive regulation of catenin import into nucleus|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of receptor internalization|positive regulation of transcription from RNA polymerase II promoter|signalosome assembly|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled-2 binding|receptor agonist activity|signal transducer activity|transcription coactivator activity			ovary(1)	1		Prostate(94;0.0405)				GCCGCCGGTGGAACTGCACCA	0.642													30	57					0	0	0.008361	0	0
OBSCN	84033	broad.mit.edu	37	1	228505630	228505631	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:228505630_228505631CC>TT	uc009xez.1	+	53	13931_13932	c.13887_13888CC>TT	c.(13885-13890)GCCCCT>GCTTCT	p.P4630S	OBSCN_uc001hsn.2_Missense_Mutation_p.P4630S	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4630	Ig-like 47.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGCCCTCAGCCCCTGAGAGCCG	0.634													27	40					0	0	0.004672	0	0
URB2	9816	broad.mit.edu	37	1	229794933	229794933	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:229794933C>T	uc001hts.1	+	10	4600	c.4464C>T	c.(4462-4464)TTC>TTT	p.F1488F	URB2_uc009xfd.1_Silent_p.F1488F	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	1488						nucleolus				central_nervous_system(2)|ovary(1)	3						ACGTCCAGTTCCTGCGGGCCT	0.502													128	174					0	0	0.003610	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232539242	232539242	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:232539242G>A	uc001hvg.2	-	19	5050	c.4892C>T	c.(4891-4893)CCC>CTC	p.P1631L	SIPA1L2_uc001hvf.2_Missense_Mutation_p.P687L	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1631					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				TACACATAAGGGCAGCTCTTG	0.577													29	104					0	0	0.005443	0	0
KIAA1383	54627	broad.mit.edu	37	1	232942489	232942489	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:232942489A>C	uc001hvh.2	+	1	1852	c.1720A>C	c.(1720-1722)AAG>CAG	p.K574Q		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	432										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				GACTGAGGATAAGAAGTCACC	0.448													11	55					0	0	0.000978	0	0
KIAA1383	54627	broad.mit.edu	37	1	232942560	232942561	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:232942560_232942561GG>AA	uc001hvh.2	+	1	1923_1924	c.1791_1792GG>AA	c.(1789-1794)GGGGGA>GGAAGA	p.G598R		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	456										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				GTTCTGTGGGGGGATGTGAAAA	0.421													17	45					0	0	0.004672	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394846	233394846	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:233394846C>T	uc001hvl.2	-	5	997	c.762G>A	c.(760-762)AAG>AAA	p.K254K	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	254						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GGGGCAACTTCTTCAAGGGTC	0.502													24	117					0	0	0.003330	0	0
KCNK1	3775	broad.mit.edu	37	1	233807177	233807177	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:233807177C>T	uc010pxo.1	+	3	1080	c.912C>T	c.(910-912)ATC>ATT	p.I304I	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	304	Cytoplasmic (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	TCTCCTCGATCACAGACCAGG	0.488													38	51					0	0	0.004289	0	0
B3GALNT2	148789	broad.mit.edu	37	1	235621987	235621987	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:235621987A>C	uc001hxc.2	-	8	1178	c.949T>G	c.(949-951)TAT>GAT	p.Y317D		NM_152490	NP_689703	Q8NCR0	B3GL2_HUMAN	beta-1,3-N-acetylgalactosaminyltransferase 2	317	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity			breast(1)	1	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.0539)|Prostate(94;0.0353)	OV - Ovarian serous cystadenocarcinoma(106;0.000117)			ATATCATCATAGATGCTGCTT	0.378													43	51					0	0	0.002522	0	0
HEATR1	55127	broad.mit.edu	37	1	236735812	236735812	+	Silent	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:236735812A>G	uc001hyd.1	-	26	3731	c.3606T>C	c.(3604-3606)TCT>TCC	p.S1202S	HEATR1_uc009xgh.1_Silent_p.S364S	NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	1202					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			TTTGCCAGTAAGAACCTCCAA	0.383													31	63					0	0	0.002445	0	0
ACTN2	88	broad.mit.edu	37	1	236898939	236898939	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:236898939C>T	uc001hyf.2	+	8	906	c.702C>T	c.(700-702)ATC>ATT	p.I234I	ACTN2_uc001hyg.2_5'UTR|ACTN2_uc009xgi.1_Intron|ACTN2_uc010pxu.1_Intron	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	234	CH 2.|Actin-binding.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			CTTCAGACATCGTGAACACCC	0.527													11	67					0	0	0.001368	0	0
RYR2	6262	broad.mit.edu	37	1	237777871	237777871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:237777871G>A	uc001hyl.1	+	37	5563	c.5443G>A	c.(5443-5445)GAA>AAA	p.E1815K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1815	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGGGACTACTGAATTCCTCTT	0.483													158	243					0	0	0.003610	0	0
CHRM3	1131	broad.mit.edu	37	1	240071954	240071954	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:240071954G>A	uc001hyp.2	+	5	1982	c.1203G>A	c.(1201-1203)TTG>TTA	p.L401L		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	401	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	TGGTGGACTTGGAGAGGAAAG	0.572													13	23					0	0	0.001855	0	0
CHRM3	1131	broad.mit.edu	37	1	240072236	240072236	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:240072236G>A	uc001hyp.2	+	5	2264	c.1485G>A	c.(1483-1485)GCG>GCA	p.A495A		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	495	Helical; Name=6; (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	CCCTCAGTGCGATCTTGCTTG	0.498													72	90					0	0	0.003610	0	0
FMN2	56776	broad.mit.edu	37	1	240370340	240370340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:240370340C>T	uc010pyd.1	+	5	2453	c.2228C>T	c.(2227-2229)TCG>TTG	p.S743L	FMN2_uc010pye.1_Missense_Mutation_p.S747L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	743					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GAGGCGAAATCGATACAGACT	0.572													10	47					0	0	0.006214	0	0
FMN2	56776	broad.mit.edu	37	1	240374416	240374416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:240374416G>A	uc010pyd.1	+	6	4171	c.3946G>A	c.(3946-3948)GAA>AAA	p.E1316K	FMN2_uc010pye.1_Missense_Mutation_p.E1320K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1316	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			ACTTATTTGGGAAAAAATTGA	0.313													48	87					0	0	0.003610	0	0
FMN2	56776	broad.mit.edu	37	1	240601433	240601433	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:240601433C>T	uc010pyd.1	+	16	5208	c.4983C>T	c.(4981-4983)TTC>TTT	p.F1661F	FMN2_uc010pye.1_Silent_p.F1665F|FMN2_uc010pyg.1_Silent_p.F257F	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1661	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CAAATGCTTTCTTCAGTATCT	0.388													36	142					0	0	0.002836	0	0
RGS7	6000	broad.mit.edu	37	1	241262011	241262011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:241262011G>A	uc001hyv.2	-	3	460	c.130C>T	c.(130-132)CGT>TGT	p.R44C	RGS7_uc010pyh.1_Missense_Mutation_p.R18C|RGS7_uc010pyj.1_5'UTR|RGS7_uc001hyu.2_Missense_Mutation_p.R44C|RGS7_uc009xgn.1_Missense_Mutation_p.R44C|RGS7_uc001hyw.2_Missense_Mutation_p.R44C	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	44	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TTGACCGTACGAATAGGAATT	0.358													11	73					0	0	0.001368	0	0
VN1R5	317705	broad.mit.edu	37	1	247419901	247419901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:247419901G>A	uc010pyu.1	+	2	528	c.528G>A	c.(526-528)ATG>ATA	p.M176I		NM_173858	NP_776257	Q7Z5H4	VN1R5_HUMAN	vomeronasal 1 receptor 5	176	Helical; Name=5; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0	all_cancers(71;5.7e-05)|all_epithelial(71;1.03e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)	all_cancers(173;0.0314)	OV - Ovarian serous cystadenocarcinoma(106;0.00854)			TCCTCAACATGTTCATTGGTG	0.488													79	325					0	0	0.003610	0	0
NLRP3	114548	broad.mit.edu	37	1	247587615	247587615	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:247587615C>T	uc001icr.2	+	5	1008	c.870C>T	c.(868-870)ATC>ATT	p.I290I	NLRP3_uc001ics.2_Silent_p.I290I|NLRP3_uc001icu.2_Silent_p.I290I|NLRP3_uc001icw.2_Silent_p.I290I|NLRP3_uc001icv.2_Silent_p.I290I|NLRP3_uc010pyw.1_Silent_p.I288I|NLRP3_uc001ict.1_Silent_p.I288I	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	290	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TCCACAAGATCGTGAGAAAAC	0.562													32	93					0	0	0.008361	0	0
NLRP3	114548	broad.mit.edu	37	1	247588113	247588113	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:247588113G>A	uc001icr.2	+	5	1506	c.1368G>A	c.(1366-1368)GGG>GGA	p.G456G	NLRP3_uc001ics.2_Silent_p.G456G|NLRP3_uc001icu.2_Silent_p.G456G|NLRP3_uc001icw.2_Silent_p.G456G|NLRP3_uc001icv.2_Silent_p.G456G|NLRP3_uc010pyw.1_Silent_p.G454G|NLRP3_uc001ict.1_Silent_p.G454G	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	456	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CCCGGGGAGGGAGCCAGGAGC	0.592													17	67					0	0	0.004990	0	0
OR2C3	81472	broad.mit.edu	37	1	247694968	247694968	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:247694968G>A	uc009xgy.2	-	2	1208	c.846C>T	c.(844-846)GTC>GTT	p.V282V	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			GCGCAGGAGTGACTACGGTGT	0.532													24	98					0	0	0.005443	0	0
OR13G1	441933	broad.mit.edu	37	1	247835454	247835454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:247835454C>T	uc001idi.1	-	1	890	c.890G>A	c.(889-891)GGA>GAA	p.G297E		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CTTCCTAATTCCTGCCTGCAT	0.423													27	111					0	0	0.002096	0	0
OR13G1	441933	broad.mit.edu	37	1	247836013	247836013	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:247836013G>A	uc001idi.1	-	1	331	c.331C>T	c.(331-333)CTC>TTC	p.L111F		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GTGGTGAAGAGAACCATCTCA	0.468													17	40					0	0	0.008871	0	0
OR13G1	441933	broad.mit.edu	37	1	247836293	247836293	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:247836293C>T	uc001idi.1	-	1	51	c.51G>A	c.(49-51)AAG>AAA	p.K17K		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GGAGTTCAGGCTTTTTGGTGA	0.398													17	85					0	0	0.008871	0	0
TRIM58	25893	broad.mit.edu	37	1	248031151	248031151	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:248031151T>G	uc001ido.2	+	4	800	c.752T>G	c.(751-753)GTG>GGG	p.V251G	OR2W3_uc001idp.1_5'Flank	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	251						intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TTTCAGGGTGTGAGAGGAGTC	0.468													32	54					0	0	0.003271	0	0
OR2M2	391194	broad.mit.edu	37	1	248344172	248344172	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:248344172G>A	uc010pzf.1	+	1	885	c.885G>A	c.(883-885)AAG>AAA	p.K295K		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TCCGCAACAAGGAGGTGACTA	0.453													121	171					0	0	0.003610	0	0
OR2M3	127062	broad.mit.edu	37	1	248366969	248366969	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:248366969C>T	uc010pzg.1	+	1	600	c.600C>T	c.(598-600)TTC>TTT	p.F200F		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	200	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			AGATTCTTTTCATCTGCTGTA	0.443													70	300					0	0	0.003610	0	0
OR2T1	26696	broad.mit.edu	37	1	248569764	248569764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:248569764C>T	uc010pzm.1	+	1	469	c.469C>T	c.(469-471)CTT>TTT	p.L157F		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	157	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTACCTTACCCTTGTGGGAGC	0.512													42	163					0	0	0.002222	0	0
OR2T1	26696	broad.mit.edu	37	1	248569979	248569979	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:248569979C>T	uc010pzm.1	+	1	684	c.684C>T	c.(682-684)TTC>TTT	p.F228F		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	228	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ACCACTTCTTCTGTGAGGCAC	0.512													24	108					0	0	0.003954	0	0
OR2G6	391211	broad.mit.edu	37	1	248685747	248685747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr1:248685747C>T	uc001ien.1	+	1	800	c.800C>T	c.(799-801)TCC>TTC	p.S267F		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AATAGGAGATCCAAAAACCAG	0.443													29	119					0	0	0.002445	0	0
CALML5	51806	broad.mit.edu	37	10	5541038	5541038	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:5541038T>G	uc001iic.2	-	1	496	c.364A>C	c.(364-366)ATG>CTG	p.M122L		NM_017422	NP_059118	Q9NZT1	CALL5_HUMAN	calmodulin-like 5	122	EF-hand 4.				epidermis development|signal transduction		calcium ion binding|protein binding				0						TCGCGGATCATGGCGTCCAGC	0.711													7	7					0	0	0.003080	0	0
C10orf18	54906	broad.mit.edu	37	10	5791322	5791322	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:5791322C>T	uc001iij.2	+	15	6563	c.5938C>T	c.(5938-5940)CTG>TTG	p.L1980L	C10orf18_uc001iik.2_Silent_p.L824L	NM_017782	NP_060252	Q5VWN6	CJ018_HUMAN	hypothetical protein LOC54906	1980										ovary(1)|central_nervous_system(1)	2						CCTGGAGTATCTGCGTTTTGC	0.507													28	24					0	0	0.006320	0	0
SFMBT2	57713	broad.mit.edu	37	10	7217970	7217970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:7217970G>A	uc009xio.1	-	17	2057	c.1966C>T	c.(1966-1968)CAT>TAT	p.H656Y	SFMBT2_uc001ijn.1_Missense_Mutation_p.H656Y|SFMBT2_uc010qay.1_Missense_Mutation_p.H491Y	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	656					regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						GTTTTGGTATGAATGGAGCAG	0.403													23	39					0	0	0.003954	0	0
KIN	22944	broad.mit.edu	37	10	7820848	7820848	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:7820848T>C	uc001ijt.2	-	5	559	c.511A>G	c.(511-513)AAA>GAA	p.K171E	KIN_uc010qaz.1_RNA|KIN_uc009xip.2_Missense_Mutation_p.K171E|KIN_uc010qba.1_Missense_Mutation_p.K65E	NM_012311	NP_036443	O60870	KIN17_HUMAN	HsKin17 protein	171	Potential.				DNA recombination|DNA repair|DNA replication|interspecies interaction between organisms|mRNA processing	cytoplasm|nuclear matrix	double-stranded DNA binding|RNA binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TCAATAAATTTGGCAGTTTTT	0.453													73	87					0	0	0.003610	0	0
TAF3	83860	broad.mit.edu	37	10	8007463	8007463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:8007463C>T	uc010qbd.1	+	3	1990	c.1990C>T	c.(1990-1992)CCC>TCC	p.P664S		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	664	Lys-rich.				maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						GTTGGCCCTGCCCTTGTTCAG	0.423													26	32					0	0	0.008361	0	0
GATA3	2625	broad.mit.edu	37	10	8115874	8115874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:8115874C>T	uc001ika.2	+	6	1777	c.1220C>T	c.(1219-1221)TCG>TTG	p.S407L	GATA3_uc001ijz.2_Missense_Mutation_p.S408L	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	407					aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding			breast(17)|ovary(3)|central_nervous_system(2)	22						AGCCACATCTCGCCCTTCAGC	0.602			F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						25	23					0	0	0.003330	0	0
DCLRE1C	64421	broad.mit.edu	37	10	14950843	14950843	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:14950843C>G	uc001inn.2	-	14	1728	c.1643G>C	c.(1642-1644)AGT>ACT	p.S548T	DCLRE1C_uc010qbx.1_Intron|DCLRE1C_uc001ink.2_Missense_Mutation_p.S201T|DCLRE1C_uc001inl.2_Missense_Mutation_p.S428T|DCLRE1C_uc009xji.2_Missense_Mutation_p.S433T|DCLRE1C_uc001inm.2_Missense_Mutation_p.S428T|DCLRE1C_uc001ino.2_Missense_Mutation_p.S433T|DCLRE1C_uc009xjh.2_RNA|DCLRE1C_uc001inp.2_Missense_Mutation_p.S428T|DCLRE1C_uc001inq.2_Missense_Mutation_p.S428T|DCLRE1C_uc001inr.2_Missense_Mutation_p.S433T	NM_001033855	NP_001029027	Q96SD1	DCR1C_HUMAN	artemis protein isoform a	548				S->A: Reduced IR induced phosphorylation; when associated with A-516; A-534; A-538; A-553; A-561 and A-562.	DNA recombination	nucleus	5'-3' exonuclease activity|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)	1						CCAGCCTTGACTTCCTTGTTC	0.443								Involved_in_tolerance_or_repair_of_DNA_crosslinks|NHEJ					27	30					0	0	0.007291	0	0
KIAA1217	56243	broad.mit.edu	37	10	24822051	24822051	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:24822051C>T	uc001iru.3	+	16	3702	c.3299C>T	c.(3298-3300)CCA>CTA	p.P1100L	KIAA1217_uc001irs.2_Missense_Mutation_p.P1020L|KIAA1217_uc001irt.3_Missense_Mutation_p.P1065L|KIAA1217_uc010qcy.1_Missense_Mutation_p.P1064L|KIAA1217_uc010qcz.1_Missense_Mutation_p.P1065L|KIAA1217_uc001irw.2_Missense_Mutation_p.P783L|KIAA1217_uc001irz.2_Missense_Mutation_p.P783L|KIAA1217_uc001irx.2_Missense_Mutation_p.P783L|KIAA1217_uc001iry.2_Missense_Mutation_p.P783L	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1100					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						ACAAAATATCCAGCAGAGGAG	0.512													26	16					0	0	0.003330	0	0
ARMC4	55130	broad.mit.edu	37	10	28225792	28225792	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:28225792T>G	uc009xky.2	-	15	2213	c.2115A>C	c.(2113-2115)GAA>GAC	p.E705D	ARMC4_uc010qds.1_Missense_Mutation_p.E230D|ARMC4_uc010qdt.1_Missense_Mutation_p.E397D|ARMC4_uc001itz.2_Missense_Mutation_p.E705D	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	705							binding			ovary(4)|skin(2)	6						GGTCCCGGGTTTCCTTATCTT	0.478													24	24					0	0	0.003330	0	0
SVIL	6840	broad.mit.edu	37	10	29840032	29840032	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:29840032C>T	uc001iut.1	-	6	1074	c.321G>A	c.(319-321)AGG>AGA	p.R107R	SVIL_uc001iuu.1_Silent_p.R107R|SVIL_uc009xld.1_Silent_p.R107R	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	107	Interaction with MYLK (By similarity).				cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				CTGCTTTGTACCTTGCAATTC	0.532													47	53					0	0	0.003610	0	0
KIAA1462	57608	broad.mit.edu	37	10	30315548	30315548	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:30315548C>G	uc001iux.2	-	2	3588	c.3529G>C	c.(3529-3531)GAT>CAT	p.D1177H	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.D1039H|KIAA1462_uc009xle.1_Missense_Mutation_p.D1177H	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1177										ovary(4)	4						CCGTCCACATCTGAGTGCTCA	0.572													60	62					0	0	0.003610	0	0
NRP1	8829	broad.mit.edu	37	10	33515180	33515181	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:33515180_33515181CC>TT	uc001iwx.3	-	7	1541_1542	c.1018_1019GG>AA	c.(1018-1020)GGG>AAG	p.G340K	NRP1_uc001iwv.3_Missense_Mutation_p.G340K|NRP1_uc009xlz.2_Missense_Mutation_p.G340K|NRP1_uc001iww.3_Missense_Mutation_p.G159K|NRP1_uc001iwy.3_Missense_Mutation_p.G340K|NRP1_uc001iwz.2_Missense_Mutation_p.G340K|NRP1_uc001ixa.2_Missense_Mutation_p.G340K|NRP1_uc001ixb.1_Missense_Mutation_p.G340K|NRP1_uc001ixc.1_Missense_Mutation_p.G340K	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	340	F5/8 type C 1.|Extracellular (Potential).				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	GCCCTGTGTCCCGACAGCCGTG	0.485													16	25					0	0	0.004672	0	0
BMS1	9790	broad.mit.edu	37	10	43318679	43318679	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:43318679C>T	uc001jaj.2	+	20	3604	c.3246C>T	c.(3244-3246)TTC>TTT	p.F1082F		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	1082					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						AAGGAGCTTTCAGGGCCAGCT	0.512													25	23					0	0	0.003330	0	0
PPYR1	5540	broad.mit.edu	37	10	47087321	47087321	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:47087321C>T	uc001jee.2	+	3	957	c.538C>T	c.(538-540)CTG>TTG	p.L180L	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.L180L	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	180	Extracellular (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						CAACAGCATCCTGGAGAATGT	0.582													18	25					0	0	0.007413	0	0
LOC642826	642826	broad.mit.edu	37	10	47193377	47193377	+	RNA	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:47193377T>C	uc001jei.2	-	16		c.2140A>G			uc009xnf.2_Missense_Mutation_p.M248V					Homo sapiens cDNA, FLJ99065.												0						GACCAGCGCATGGACAGCTTG	0.582													2	6					0	0	0.004672	0	0
CHAT	1103	broad.mit.edu	37	10	50859976	50859976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:50859976G>A	uc001jhz.2	+	11	1711	c.1558G>A	c.(1558-1560)GGG>AGG	p.G520R	CHAT_uc001jhv.1_Missense_Mutation_p.G402R|CHAT_uc001jhx.1_Missense_Mutation_p.G402R|CHAT_uc001jhy.1_Missense_Mutation_p.G402R|CHAT_uc001jia.2_Missense_Mutation_p.G402R|CHAT_uc010qgs.1_Missense_Mutation_p.G402R	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	520	Coenzyme A binding.				neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	TGACAACTATGGGAAAACATT	0.418													10	16					0	0	0.008291	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72500919	72500919	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:72500919G>A	uc001jrh.2	+	12	1924	c.1924_splice	c.e12+1	p.D642_splice	ADAMTS14_uc001jrg.2_Splice_Site_p.D645_splice|ADAMTS14_uc001jri.1_Splice_Site_p.D165_splice	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1						collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						CCTGACGATGGTGAGTGGGCC	0.627													8	12					0	0	0.006214	0	0
CDH23	64072	broad.mit.edu	37	10	73491806	73491806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:73491806G>A	uc001jrx.3	+	31	4155	c.3778G>A	c.(3778-3780)GAG>AAG	p.E1260K	CDH23_uc001jrz.2_Missense_Mutation_p.E876K|C10orf105_uc001jsb.1_Intron|CDH23_uc001jsc.1_Missense_Mutation_p.E68K	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1260	Cadherin 12.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						TGAGATTGACGAGAGCACAGG	0.562													8	17					0	0	0.003080	0	0
OPN4	94233	broad.mit.edu	37	10	88419807	88419807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:88419807C>T	uc001kdq.2	+	6	1183	c.956C>T	c.(955-957)GCC>GTC	p.A319V	OPN4_uc001kdp.2_Missense_Mutation_p.A330V|OPN4_uc010qmk.1_Missense_Mutation_p.A330V|OPN4_uc009xsx.1_5'Flank	NM_033282	NP_150598	Q9UHM6	OPN4_HUMAN	opsin 4 isoform 1	319	Extracellular (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|rhythmic process|visual perception	integral to membrane|plasma membrane	11-cis retinal binding|G-protein coupled photoreceptor activity			ovary(1)	1						GCCCTGGTGGCCTTTGCTGGG	0.622													26	28					0	0	0.002836	0	0
BTAF1	9044	broad.mit.edu	37	10	93773459	93773459	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:93773459C>T	uc001khr.2	+	31	4445	c.4347C>T	c.(4345-4347)TTC>TTT	p.F1449F		NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	1449	Helicase ATP-binding.				negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				TATTTGATTTCCTCATGCCAG	0.403													22	26					0	0	0.002299	0	0
PLCE1	51196	broad.mit.edu	37	10	95791085	95791085	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:95791085C>T	uc001kjk.2	+	2	916	c.282C>T	c.(280-282)ATC>ATT	p.I94I	PLCE1_uc010qnx.1_Silent_p.I94I	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	94					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GGGAGAAAATCATGCCAGATT	0.378													23	21					0	0	0.002780	0	0
CYP2C19	1557	broad.mit.edu	37	10	96534882	96534882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:96534882G>A	uc010qnz.1	+	2	236	c.236G>A	c.(235-237)GGA>GAA	p.G79E	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Missense_Mutation_p.G57E	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	79					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	GTGCTGCATGGATATGAAGTG	0.458													27	34					0	0	0.004656	0	0
TLL2	7093	broad.mit.edu	37	10	98192651	98192651	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:98192651G>A	uc001kml.1	-	4	659	c.433C>T	c.(433-435)CCC>TCC	p.P145S	TLL2_uc009xvf.1_Intron	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	145					cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		CGGACCCGGGGAGAGAAGGTC	0.552													22	29					0	0	0.001882	0	0
SLIT1	6585	broad.mit.edu	37	10	98802661	98802662	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:98802661_98802662CC>TT	uc001kmw.2	-	20	2412_2413	c.2160_2161GG>AA	c.(2158-2163)GAGGAA>GAAAAA	p.E721K	SLIT1_uc009xvh.1_Missense_Mutation_p.E731K	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	721	LRRCT 3.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		GAGTTACCTTCCTCACACCTGA	0.644													21	20					0	0	0.004672	0	0
SEC31B	25956	broad.mit.edu	37	10	102250508	102250508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:102250508G>A	uc001krc.1	-	20	2707	c.2605C>T	c.(2605-2607)CCC>TCC	p.P869S	SEC31B_uc010qpo.1_Missense_Mutation_p.P868S|SEC31B_uc001krd.1_Missense_Mutation_p.P406S|SEC31B_uc001krf.1_Missense_Mutation_p.P406S|SEC31B_uc001kre.1_Missense_Mutation_p.P406S	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	869	Pro-rich.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		ATGGCCTGGGGCCCAGGTGCC	0.572													15	14					0	0	0.003163	0	0
SEMA4G	57715	broad.mit.edu	37	10	102738691	102738691	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:102738691G>A	uc010qpt.1	+	8	1172	c.729G>A	c.(727-729)ACG>ACA	p.T243T	SEMA4G_uc001krv.2_RNA|SEMA4G_uc001krw.1_Silent_p.T243T|SEMA4G_uc001krx.2_Silent_p.T243T|MRPL43_uc001kry.1_3'UTR|MRPL43_uc010qpu.1_3'UTR	NM_017893	NP_060363	Q9NTN9	SEM4G_HUMAN	semaphorin 4G	243	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3.71e-09)|all cancers(201;2.1e-07)		ACTTCTTCACGGAGCGTGCCA	0.607													17	12					0	0	0.008871	0	0
C10orf76	79591	broad.mit.edu	37	10	103789475	103789475	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:103789475G>A	uc009xwy.1	-	5	436	c.334C>T	c.(334-336)CAT>TAT	p.H112Y	C10orf76_uc001kui.2_Missense_Mutation_p.H112Y	NM_024541	NP_078817	Q5T2E6	CJ076_HUMAN	hypothetical protein LOC79591	112						integral to membrane					0		Colorectal(252;0.123)		Epithelial(162;2.41e-08)|all cancers(201;6.41e-07)		TTCTTTTGATGGACTCCTCGA	0.478													24	24					0	0	0.003954	0	0
COL17A1	1308	broad.mit.edu	37	10	105815669	105815669	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:105815669C>T	uc001kxr.2	-	18	1727	c.1558G>A	c.(1558-1560)GAA>AAA	p.E520K	COL17A1_uc010qqv.1_Missense_Mutation_p.E504K	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	520	Extracellular (Potential).|Nonhelical region (NC16).				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CGGTCCTTTTCTATTCTATCC	0.592													46	48					0	0	0.003610	0	0
NRAP	4892	broad.mit.edu	37	10	115388709	115388709	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:115388709T>G	uc001laj.2	-	20	2276	c.2112A>C	c.(2110-2112)GAA>GAC	p.E704D	NRAP_uc009xyb.2_Missense_Mutation_p.E15D|NRAP_uc001lak.2_Missense_Mutation_p.E669D|NRAP_uc001lal.3_Missense_Mutation_p.E704D	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	704	Nebulin 17.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		TCTTGGCTTGTTCCAAGTTGA	0.547													21	18					0	0	0.001882	0	0
NRAP	4892	broad.mit.edu	37	10	115389533	115389533	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:115389533C>T	uc001laj.2	-	19	2018	c.1854G>A	c.(1852-1854)AAG>AAA	p.K618K	NRAP_uc009xyb.2_5'Flank|NRAP_uc001lak.2_Silent_p.K583K|NRAP_uc001lal.3_Silent_p.K618K	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	618	Nebulin 14.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		CAAAGCCTTTCTTATATTCAA	0.463													11	17					0	0	0.000978	0	0
ADRB1	153	broad.mit.edu	37	10	115804217	115804217	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:115804217T>G	uc001lba.2	+	1	412	c.326T>G	c.(325-327)CTG>CGG	p.L109R		NM_000684	NP_000675	P08588	ADRB1_HUMAN	beta-1-adrenergic receptor	109	Helical; Name=2; (By similarity).				positive regulation of cAMP biosynthetic process	integral to plasma membrane	alpha-2A adrenergic receptor binding|beta1-adrenergic receptor activity|protein heterodimerization activity				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0124)|all cancers(201;0.0298)	Acebutolol(DB01193)|Alprenolol(DB00866)|Amiodarone(DB01118)|Arbutamine(DB01102)|Atenolol(DB00335)|Betaxolol(DB00195)|Bevantolol(DB01295)|Bisoprolol(DB00612)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Desipramine(DB01151)|Dobutamine(DB00841)|Dopamine(DB00988)|Epinephrine(DB00668)|Esmolol(DB00187)|Isoetharine(DB00221)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Metoprolol(DB00264)|Nadolol(DB01203)|Norepinephrine(DB00368)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Practolol(DB01297)|Propranolol(DB00571)|Risperidone(DB00734)|Timolol(DB00373)|Ziprasidone(DB00246)	GTCATGGGGCTGCTGGTGGTG	0.652													30	39					0	0	0.002096	0	0
VWA2	340706	broad.mit.edu	37	10	116049073	116049073	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:116049073C>T	uc001lbl.1	+	12	2268	c.1947C>T	c.(1945-1947)GCC>GCT	p.A649A	VWA2_uc001lbk.1_Silent_p.A649A|VWA2_uc009xyf.1_Silent_p.A345A	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	649	VWFA 3.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		AGGATGCAGCCGTTCCTGCCC	0.627													10	10					0	0	0.008291	0	0
ATRNL1	26033	broad.mit.edu	37	10	117704261	117704261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:117704261C>T	uc001lcg.2	+	29	4497	c.4111C>T	c.(4111-4113)CTT>TTT	p.L1371F	ATRNL1_uc010qsm.1_Missense_Mutation_p.L500F|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1371	Cytoplasmic (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		TCGAAAACACCTTTCAACACG	0.428													37	30					0	0	0.008740	0	0
PDZD8	118987	broad.mit.edu	37	10	119044225	119044225	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:119044225C>T	uc001lde.1	-	5	2218	c.2019G>A	c.(2017-2019)TCG>TCA	p.S673S		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	673					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		GACGGTCGTCCGAACTGTCCT	0.428													28	31					0	0	0.008361	0	0
EIF3A	8661	broad.mit.edu	37	10	120816534	120816534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:120816534G>A	uc001ldu.2	-	13	2142	c.1996C>T	c.(1996-1998)CCA>TCA	p.P666S	EIF3A_uc010qsu.1_Missense_Mutation_p.P632S	NM_003750	NP_003741	Q14152	EIF3A_HUMAN	eukaryotic translation initiation factor 3,	666	Interaction with EIF3B.|Glu-rich.				formation of translation initiation complex	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|structural molecule activity|translation initiation factor activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0236)		ATAAAATCTGGATCCAATTCC	0.343													17	9					0	0	0.004990	0	0
HTRA1	5654	broad.mit.edu	37	10	124248988	124248988	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:124248988T>C	uc001lgj.2	+	3	751	c.623T>C	c.(622-624)ATT>ACT	p.I208T		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	208	Serine protease.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				TCTGGGTTTATTGTGTCGGAA	0.488													42	45					0	0	0.003214	0	0
DMBT1	1755	broad.mit.edu	37	10	124390686	124390686	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:124390686C>T	uc001lgk.1	+	46	5954	c.5848C>T	c.(5848-5850)CTG>TTG	p.L1950L	DMBT1_uc001lgl.1_Silent_p.L1940L|DMBT1_uc001lgm.1_Silent_p.L1322L|DMBT1_uc009xzz.1_Silent_p.L1950L|DMBT1_uc010qtx.1_Silent_p.L670L|DMBT1_uc009yab.1_Silent_p.L653L|DMBT1_uc009yac.1_Silent_p.L244L	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1950	SRCR 14.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CCCCATCACCCTGGACGATGT	0.552													38	28					0	0	0.006230	0	0
DMBT1	1755	broad.mit.edu	37	10	124399765	124399765	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:124399765G>A	uc001lgk.1	+	52	6871	c.6765G>A	c.(6763-6765)GTG>GTA	p.V2255V	DMBT1_uc001lgl.1_Silent_p.V2245V|DMBT1_uc001lgm.1_Silent_p.V1627V|DMBT1_uc009xzz.1_Silent_p.V2254V|DMBT1_uc010qtx.1_Silent_p.V975V|DMBT1_uc009yab.1_Silent_p.V958V|DMBT1_uc009yac.1_Silent_p.V549V	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2255	ZP.		V -> M.		epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				ATTTTGACGTGAACATTTCCT	0.468													40	52					0	0	0.004878	0	0
CUZD1	50624	broad.mit.edu	37	10	124595698	124595698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:124595698C>T	uc001lgq.2	-	6	1318	c.986G>A	c.(985-987)AGA>AAA	p.R329K	CUZD1_uc001lgp.2_Missense_Mutation_p.R48K|CUZD1_uc009yad.2_Missense_Mutation_p.R48K|CUZD1_uc009yaf.2_Intron|CUZD1_uc001lgr.2_Missense_Mutation_p.R48K|CUZD1_uc010qty.1_Missense_Mutation_p.R48K|CUZD1_uc009yae.2_Missense_Mutation_p.R48K|CUZD1_uc001lgs.2_Missense_Mutation_p.R329K|CUZD1_uc010qtz.1_Missense_Mutation_p.R329K	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	329	Extracellular (Potential).|ZP.				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		CTTTACCTTTCTGATTGTACC	0.303													29	36					0	0	0.002836	0	0
PTPRE	5791	broad.mit.edu	37	10	129868693	129868693	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:129868693C>T	uc001lkb.2	+	14	1551	c.1272C>T	c.(1270-1272)ATC>ATT	p.I424I	PTPRE_uc009yat.2_Silent_p.I435I|PTPRE_uc009yau.2_Silent_p.I424I|PTPRE_uc001lkd.2_Silent_p.I366I|PTPRE_uc010quq.1_Silent_p.I325I	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	424	Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				TCGACAAGATCGGGCTGGAGG	0.567													4	20					0	0	0.000602	0	0
ZNF511	118472	broad.mit.edu	37	10	135122932	135122932	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr10:135122932G>A	uc001lml.1	+	2	217	c.192G>A	c.(190-192)GTG>GTA	p.V64V	TUBGCP2_uc001lmg.1_5'Flank|TUBGCP2_uc010qvc.1_5'Flank|TUBGCP2_uc009ybk.1_5'Flank|TUBGCP2_uc010qvd.1_5'Flank|TUBGCP2_uc001lmh.1_Intron|ZNF511_uc001lmj.1_Silent_p.V64V|ZNF511_uc001lmk.1_Silent_p.V64V|ZNF511_uc001lmm.1_5'Flank			Q8NB15	ZN511_HUMAN	SubName: Full=cDNA FLJ78327; SubName: Full=Zinc finger protein 511, isoform CRA_d;	64					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		all cancers(32;7.56e-06)|OV - Ovarian serous cystadenocarcinoma(35;8.15e-06)|Epithelial(32;9.99e-06)		TCCAGGACGTGATCATGCAGG	0.612													7	7					0	0	0.006214	0	0
CDHR5	53841	broad.mit.edu	37	11	619372	619372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:619372C>T	uc001lqj.2	-	12	1417	c.1312G>A	c.(1312-1314)GTG>ATG	p.V438M	CDHR5_uc001lqk.2_Missense_Mutation_p.V438M|CDHR5_uc009ycc.2_Missense_Mutation_p.V272M|CDHR5_uc009ycd.2_Missense_Mutation_p.V438M|CDHR5_uc001lql.2_Missense_Mutation_p.V438M	NM_021924	NP_068743	Q9HBB8	CDHR5_HUMAN	mucin and cadherin-like isoform 1	438	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						CCAGAGGTCACCGTGTTGTGG	0.622													9	20					0	0	0.006214	0	0
MUC6	4588	broad.mit.edu	37	11	1027319	1027319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:1027319C>T	uc001lsw.2	-	17	2231	c.2180G>A	c.(2179-2181)GGT>GAT	p.G727D		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	727					maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GAACTTGTAACCCTCCAGTAT	0.662													76	144					0	0	0.003610	0	0
MUC5B	727897	broad.mit.edu	37	11	1267455	1267455	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:1267455G>A	uc009ycr.1	+	49	11220	c.11094G>A	c.(11092-11094)ACG>ACA	p.T3698T	MUC5B_uc001ltb.2_Silent_p.T3118T	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3115	7 X Cys-rich subdomain repeats.|Thr-rich.|17 X approximate tandem repeats, Ser/Thr- rich.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		AGGCCACCACGACAAGGGCCA	0.622													17	42					0	0	0.004990	0	0
KCNQ1	3784	broad.mit.edu	37	11	2608822	2608822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:2608822C>T	uc001lwn.2	+	9	1259	c.1151C>T	c.(1150-1152)GCC>GTC	p.A384V	KCNQ1_uc009ydp.1_Missense_Mutation_p.A168V|KCNQ1_uc001lwo.2_Missense_Mutation_p.A257V	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	384	Cytoplasmic (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	TGCTATGCTGCCGAGAACCCC	0.647													88	224					0	0	0.003610	0	0
MRGPRE	116534	broad.mit.edu	37	11	3249396	3249396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:3249396G>A	uc001lxq.3	-	2	941	c.631C>T	c.(631-633)CCC>TCC	p.P211S		NM_001039165	NP_001034254	Q86SM8	MRGRE_HUMAN	MAS-related GPR, member E	211	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(1)|ovary(1)	2		Medulloblastoma(188;0.00106)|all_epithelial(84;0.00111)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00529)|LUSC - Lung squamous cell carcinoma(625;0.19)		AAGCCCCGGGGTGGGGGCCGC	0.677													3	7					0	0	0.004672	0	0
OR52B4	143496	broad.mit.edu	37	11	4389397	4389397	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:4389397C>T	uc010qye.1	-	1	129	c.129G>A	c.(127-129)GGG>GGA	p.G43G		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCAGGCTGTTCCCAAGAAGGG	0.527													14	29					0	0	0.001855	0	0
TRIM21	6737	broad.mit.edu	37	11	4411334	4411334	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:4411334G>A	uc001lyy.1	-	2	419	c.306C>T	c.(304-306)TTC>TTT	p.F102F		NM_003141	NP_003132	P19474	RO52_HUMAN	tripartite motif protein 21	102	B box-type.				cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein deubiquitination|positive regulation of cell cycle|protein autoubiquitination|protein destabilization|protein monoubiquitination|protein polyubiquitination|protein trimerization	cytoplasmic mRNA processing body|nucleus	DNA binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;2.08e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0851)|LUSC - Lung squamous cell carcinoma(625;0.194)		CTTTCTCACAGAACAGGTGAA	0.557													29	36					0	0	0.007291	0	0
OR52M1	119772	broad.mit.edu	37	11	4566561	4566561	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:4566561C>T	uc010qyf.1	+	1	141	c.141C>T	c.(139-141)ATC>ATT	p.I47I		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	47	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATGTGACCATCCTGGCTGTGG	0.547													28	65					0	0	0.006320	0	0
OR52I1	390037	broad.mit.edu	37	11	4616183	4616183	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:4616183G>A	uc010qyi.1	+	1	915	c.915G>A	c.(913-915)CTG>CTA	p.L305L		NM_001005169	NP_001005169	Q8NGK6	O52I1_HUMAN	olfactory receptor, family 52, subfamily I,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;7.98e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		AACAATTGCTGGAGGGAATAT	0.468													32	91					0	0	0.002836	0	0
OR51E1	143503	broad.mit.edu	37	11	4673853	4673853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:4673853C>T	uc001lzi.3	+	2	241	c.97C>T	c.(97-99)CCA>TCA	p.P33S		NM_152430	NP_689643	Q8TCB6	O51E1_HUMAN	olfactory receptor, family 51, subfamily E,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(3)|pancreas(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;7.37e-14)|GBM - Glioblastoma multiforme(2;2.85e-05)|BRCA - Breast invasive adenocarcinoma(625;0.00222)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTTGGCCTTCCCATTGTGCTC	0.468													46	69					0	0	0.003610	0	0
OR51T1	401665	broad.mit.edu	37	11	4903722	4903722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:4903722G>A	uc010qyp.1	+	1	674	c.674G>A	c.(673-675)AGT>AAT	p.S225N		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	198	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGATCAGCAGTTTTTGGGGA	0.438													40	85					0	0	0.002222	0	0
OR51G1	79324	broad.mit.edu	37	11	4945490	4945490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:4945490C>T	uc010qyr.1	-	1	80	c.80G>A	c.(79-81)GGC>GAC	p.G27D		NM_001005237	NP_001005237	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G,	27	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGAGATCCAGCCATGGAGACC	0.473													11	22					0	0	0.008291	0	0
OR51L1	119682	broad.mit.edu	37	11	5021040	5021040	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:5021040C>T	uc010qyu.1	+	1	828	c.828C>T	c.(826-828)ATC>ATT	p.I276I		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	276	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		TAGTCCACATCCTCATGGCAG	0.458													18	38					0	0	0.007413	0	0
OR51B4	79339	broad.mit.edu	37	11	5322301	5322301	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:5322301C>T	uc010qza.1	-	1	876	c.876G>A	c.(874-876)AAG>AAA	p.K292K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	292	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCTGCTTGGTCTTGATGCTAT	0.433													11	51					0	0	0.008291	0	0
OR51B2	79345	broad.mit.edu	37	11	5344688	5344688	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:5344688G>A	uc001mao.1	-	1	895	c.840C>T	c.(838-840)CTC>CTT	p.L280L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAGGAGGAAAGAGGAAGTAGA	0.358													22	47					0	0	0.001882	0	0
OR51B2	79345	broad.mit.edu	37	11	5344769	5344769	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:5344769C>T	uc001mao.1	-	1	814	c.759G>A	c.(757-759)GTG>GTA	p.V253V	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCAAACCCATCACTGTAACAT	0.398													13	30					0	0	0.002450	0	0
OR51B2	79345	broad.mit.edu	37	11	5344895	5344895	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:5344895G>A	uc001mao.1	-	1	688	c.633C>T	c.(631-633)ATC>ATT	p.I211I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGAAGAGGATGATCAGACAGT	0.388													9	20					0	0	0.006214	0	0
OR51B5	282763	broad.mit.edu	37	11	5363817	5363817	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:5363817C>T	uc001map.1	-	1	938	c.938G>A	c.(937-939)TGA>TAA	p.*313*	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	313					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GATTGGAGATCAGGTTCCAAT	0.383													11	26					0	0	0.000978	0	0
OR51Q1	390061	broad.mit.edu	37	11	5444253	5444253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:5444253C>T	uc010qzd.1	+	1	823	c.823C>T	c.(823-825)CAT>TAT	p.H275Y	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	275	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCCACTGGTCCATGTTATCAT	0.473													29	54					0	0	0.005443	0	0
OR51I2	390064	broad.mit.edu	37	11	5474840	5474840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:5474840G>A	uc010qzf.1	+	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCCCTTGGGGGAAATACAGTG	0.572													17	34					0	0	0.004990	0	0
OR52E6	390078	broad.mit.edu	37	11	5862440	5862440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:5862440G>A	uc010qzq.1	-	1	688	c.688C>T	c.(688-690)CCC>TCC	p.P230S	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCCCAGGAGGGCAGGCAGAAG	0.433													16	30					0	0	0.003163	0	0
OR56A4	120793	broad.mit.edu	37	11	6023368	6023368	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:6023368G>A	uc010qzv.1	-	1	1011	c.1011C>T	c.(1009-1011)CTC>CTT	p.L337L		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGGGGGAATGAGGTGGTGCA	0.488													6	38					0	0	0.001168	0	0
OR56A4	120793	broad.mit.edu	37	11	6023588	6023588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:6023588G>A	uc010qzv.1	-	1	791	c.791C>T	c.(790-792)TCT>TTT	p.S264F		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GATAAGATCAGAGCCCAACAG	0.463													16	25					0	0	0.003163	0	0
DNHD1	144132	broad.mit.edu	37	11	6519925	6519925	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:6519925C>T	uc001mdw.3	+	3	1044	c.480C>T	c.(478-480)CCC>CCT	p.P160P	DNHD1_uc001mdp.2_Silent_p.P160P	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	160					microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		ATCACAGGCCCCCATGCCCAG	0.592													65	135					0	0	0.003610	0	0
ZNF215	7762	broad.mit.edu	37	11	6977185	6977185	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:6977185C>T	uc001mey.2	+	7	1565	c.977C>T	c.(976-978)CCT>CTT	p.P326L	ZNF215_uc010raw.1_3'UTR|ZNF215_uc010rax.1_Missense_Mutation_p.P88L|ZNF215_uc001mez.1_Intron	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	326					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		GTGGGAATTCCTTCAAGAAAG	0.308													25	56					0	0	0.005443	0	0
OVCH2	341277	broad.mit.edu	37	11	7721858	7721858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:7721858C>T	uc010rbf.1	-	7	886	c.886G>A	c.(886-888)GAA>AAA	p.E296K		NM_198185	NP_937828			ovochymase 2 precursor												0				Epithelial(150;7.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.197)		TGGATGTGTTCGTGGATCCAG	0.493													10	20					0	0	0.008291	0	0
OR10A3	26496	broad.mit.edu	37	11	7960951	7960951	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:7960951C>T	uc010rbi.1	-	1	117	c.117G>A	c.(115-117)CTG>CTA	p.L39L		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	39	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CATTTCCCATCAGGGTCACCA	0.473													30	36					0	0	0.008361	0	0
ST5	6764	broad.mit.edu	37	11	8752657	8752657	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:8752657G>A	uc001mgt.2	-	3	366	c.180C>T	c.(178-180)CAC>CAT	p.H60H	ST5_uc009yfr.2_Intron|ST5_uc001mgu.2_Intron|ST5_uc001mgv.2_Silent_p.H60H|ST5_uc010rbq.1_Intron|ST5_uc001mgw.1_Silent_p.H60H	NM_213618	NP_998783	P78524	ST5_HUMAN	suppression of tumorigenicity 5 isoform 1	60	Pro-rich.				positive regulation of ERK1 and ERK2 cascade		protein binding			upper_aerodigestive_tract(1)	1				Epithelial(150;2.63e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0352)		GGGAGCTGGAGTGGCTGGGGT	0.612													22	36					0	0	0.001523	0	0
AMPD3	272	broad.mit.edu	37	11	10506423	10506423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:10506423C>T	uc001mio.1	+	5	981	c.646C>T	c.(646-648)CCC>TCC	p.P216S	AMPD3_uc010rbz.1_Missense_Mutation_p.P57S|AMPD3_uc001min.1_Missense_Mutation_p.P225S|AMPD3_uc009yfw.1_Intron|AMPD3_uc009yfx.1_Missense_Mutation_p.P216S|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.P223S|AMPD3_uc009yfy.2_Missense_Mutation_p.P216S	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	216					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		TGATGCACCCCCCAACCTGGA	0.567													40	60					0	0	0.003214	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16823227	16823227	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:16823227G>A	uc001mmo.2	-	16	2310	c.2295C>T	c.(2293-2295)TCC>TCT	p.S765S	PLEKHA7_uc010rcu.1_Silent_p.S765S|PLEKHA7_uc010rcv.1_Silent_p.S339S|PLEKHA7_uc001mmn.2_Silent_p.S473S	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	765	Potential.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						TGGACTCTCTGGAGAGCTCAG	0.572													10	25					0	0	0.008291	0	0
ABCC8	6833	broad.mit.edu	37	11	17482080	17482080	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:17482080C>T	uc001mnc.2	-	6	1092	c.966G>A	c.(964-966)GGG>GGA	p.G322G	ABCC8_uc010rcy.1_Silent_p.G321G	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	322	Helical; Name=6; (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GGTCCACGATCCCAAAGATGC	0.607													90	247					0	0	0.003610	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956018	18956018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:18956018G>A	uc001mpg.2	-	1	532	c.314C>T	c.(313-315)TCC>TTC	p.S105F		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	105	Helical; Name=3; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						TGCAAAGTAGGAAAACATCAT	0.547													45	257					0	0	0.003610	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956201	18956201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:18956201C>T	uc001mpg.2	-	1	349	c.131G>A	c.(130-132)GGA>GAA	p.G44E		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	44	Helical; Name=1; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						AACTGCGTTTCCTGTCAGCCC	0.567													56	296					0	0	0.003610	0	0
SLC6A5	9152	broad.mit.edu	37	11	20622786	20622786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:20622786G>A	uc001mqd.2	+	2	388	c.115G>A	c.(115-117)GAG>AAG	p.E39K	SLC6A5_uc009yic.2_5'UTR	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	39	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	CCCGGAGCAGGAGCTTCCCGC	0.721													4	16					0	0	0.000248	0	0
ANO5	203859	broad.mit.edu	37	11	22242716	22242716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:22242716C>T	uc001mqi.2	+	5	571	c.254C>T	c.(253-255)TCC>TTC	p.S85F	ANO5_uc001mqj.2_Missense_Mutation_p.S84F	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	85	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						TTTGTGCTTTCCTACGTTGAT	0.343													9	34					0	0	0.008291	0	0
GAS2	2620	broad.mit.edu	37	11	22747923	22747923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:22747923C>T	uc009yie.2	+	4	659	c.353C>T	c.(352-354)TCC>TTC	p.S118F	GAS2_uc001mqm.2_Missense_Mutation_p.S118F|GAS2_uc001mqn.2_RNA|GAS2_uc001mqo.2_Missense_Mutation_p.S118F	NM_001143830	NP_001137302	O43903	GAS2_HUMAN	growth arrest-specific 2	118	CH.				cell cycle arrest|cellular component disassembly involved in apoptosis|regulation of cell shape	actin filament|cytosol|membrane				ovary(1)|skin(1)	2						AATTTCTTATCCTGGTGCCGA	0.393													29	80					0	0	0.002836	0	0
CAT	847	broad.mit.edu	37	11	34473726	34473726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:34473726C>T	uc001mvm.2	+	4	535	c.452C>T	c.(451-453)CCC>CTC	p.P151L	CAT_uc009ykc.1_RNA	NM_001752	NP_001743	P04040	CATA_HUMAN	catalase	151					hydrogen peroxide catabolic process|negative regulation of apoptosis|positive regulation of cell division|protein tetramerization|purine base metabolic process|purine nucleotide catabolic process|UV protection	peroxisomal matrix|peroxisomal membrane	catalase activity|heme binding|NADP binding|protein homodimerization activity			ovary(2)|pancreas(1)	3		Lung NSC(402;2.76e-08)|Acute lymphoblastic leukemia(5;0.00143)|all_hematologic(20;0.0116)|Melanoma(852;0.027)		BRCA - Breast invasive adenocarcinoma(625;0.000995)	Fomepizole(DB01213)	AATAACACCCCCATTTTCTTC	0.413													12	50					0	0	0.000978	0	0
RAG2	5897	broad.mit.edu	37	11	36615272	36615272	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:36615272C>T	uc001mwv.3	-	2	635	c.447G>A	c.(445-447)GGG>GGA	p.G149G	C11orf74_uc010rfd.1_5'Flank|C11orf74_uc001mww.1_5'Flank|C11orf74_uc001mwx.1_5'Flank|C11orf74_uc001mwy.1_5'Flank|C11orf74_uc001mwz.1_5'Flank|C11orf74_uc010rfe.1_5'Flank	NM_000536	NP_000527	P55895	RAG2_HUMAN	recombination activating gene 2	149					chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			skin(3)|ovary(1)|pancreas(1)	5	all_lung(20;0.226)	all_hematologic(20;0.00756)				CCATACTTTTCCCTCGGCTGT	0.453									Familial_Hemophagocytic_Lymphohistiocytosis				37	97					0	0	0.006230	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136952	40136952	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:40136952A>T	uc001mxa.1	-	2	2855	c.891T>A	c.(889-891)CAT>CAA	p.H297Q	LRRC4C_uc001mxc.1_Missense_Mutation_p.H293Q|LRRC4C_uc001mxd.1_Missense_Mutation_p.H293Q|LRRC4C_uc001mxb.1_Missense_Mutation_p.H293Q	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	297					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TGTGATGTAAATGTATCCGCT	0.473													35	71					0	0	0.004289	0	0
API5	8539	broad.mit.edu	37	11	43348116	43348116	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:43348116C>T	uc010rfh.1	+	7	983	c.810C>T	c.(808-810)CTC>CTT	p.L270L	API5_uc010rfg.1_Silent_p.L259L|API5_uc001mxf.2_Silent_p.L270L|API5_uc010rfi.1_Silent_p.L216L|API5_uc001mxg.2_Silent_p.L144L	NM_001142930	NP_001136402	Q9BZZ5	API5_HUMAN	apoptosis inhibitor 5 isoform a	270					anti-apoptosis|apoptosis	cytoplasm|spliceosomal complex	fibroblast growth factor binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						TCCCTAACCTCGGTACCTTGA	0.368													55	158					0	0	0.003610	0	0
TSPAN18	90139	broad.mit.edu	37	11	44939538	44939538	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:44939538C>T	uc001mye.3	+	4	435	c.274C>T	c.(274-276)CTG>TTG	p.L92L	TP53I11_uc001myf.1_Intron|TSPAN18_uc001myg.2_Silent_p.L92L	NM_130783	NP_570139	Q96SJ8	TSN18_HUMAN	tetraspanin 18 isoform 2	92	Helical; (Potential).					integral to membrane					0						CCTGTTCATCCTGATCATCTT	0.572													16	70					0	0	0.006122	0	0
AMBRA1	55626	broad.mit.edu	37	11	46564444	46564444	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:46564444G>A	uc010rgu.1	-	7	1483	c.1123C>T	c.(1123-1125)CAG>TAG	p.Q375*	AMBRA1_uc010rgt.1_5'UTR|AMBRA1_uc009ylc.1_Nonsense_Mutation_p.Q375*|AMBRA1_uc001ncu.1_Nonsense_Mutation_p.Q285*|AMBRA1_uc001ncv.2_Nonsense_Mutation_p.Q285*|AMBRA1_uc001ncw.2_Nonsense_Mutation_p.Q285*|AMBRA1_uc001ncx.2_Nonsense_Mutation_p.Q375*	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	375					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		GTGCTGCTCTGGACTGTACTG	0.627													52	106					0	0	0.003610	0	0
AMBRA1	55626	broad.mit.edu	37	11	46568772	46568772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:46568772G>A	uc010rgu.1	-	4	629	c.269C>T	c.(268-270)TCC>TTC	p.S90F	AMBRA1_uc009ylc.1_Missense_Mutation_p.S90F|AMBRA1_uc001ncu.1_Missense_Mutation_p.S90F|AMBRA1_uc001ncv.2_Missense_Mutation_p.S90F|AMBRA1_uc001ncw.2_Missense_Mutation_p.S90F|AMBRA1_uc001ncx.2_Missense_Mutation_p.S90F	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	90	WD 1.				autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		TCCAATCAGGGAATGAACACA	0.468													32	72					0	0	0.002836	0	0
ARHGAP1	392	broad.mit.edu	37	11	46702856	46702856	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:46702856T>C	uc001ndd.2	-	6	592	c.523A>G	c.(523-525)AAG>GAG	p.K175E		NM_004308	NP_004299	Q07960	RHG01_HUMAN	Rho GTPase activating protein 1	175	CRAL-TRIO.				Rho protein signal transduction	cytosol|intracellular membrane-bounded organelle	SH3 domain binding|SH3/SH2 adaptor activity			skin(1)	1		Lung NSC(402;1.76e-12)|all_lung(304;1.3e-11)		GBM - Glioblastoma multiforme(35;5.17e-06)|BRCA - Breast invasive adenocarcinoma(625;0.00112)|Lung(87;0.153)		ATGAGGGGCTTGAAGAGGATG	0.567													24	75					0	0	0.007291	0	0
LRP4	4038	broad.mit.edu	37	11	46916348	46916348	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:46916348G>A	uc001ndn.3	-	12	1478	c.1332C>T	c.(1330-1332)TTC>TTT	p.F444F		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	444	Extracellular (Potential).				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		TGCGATTGGCGAACAGCAGCA	0.562													24	52					0	0	0.004656	0	0
LRP4	4038	broad.mit.edu	37	11	46916738	46916738	+	Missense_Mutation	SNP	G	A	A	rs140528156		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:46916738G>A	uc001ndn.3	-	11	1434	c.1288C>T	c.(1288-1290)CGG>TGG	p.R430W		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	430	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		CAGCTGCGCCGGTCGGGCCGT	0.607													20	40					0	0	0.008871	0	0
LRP4	4038	broad.mit.edu	37	11	46917529	46917529	+	Silent	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:46917529A>C	uc001ndn.3	-	10	1235	c.1089T>G	c.(1087-1089)GGT>GGG	p.G363G		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	363	Extracellular (Potential).|EGF-like 1; calcium-binding (Potential).				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		GGGCACAGCCACCGTTGTTAA	0.622													16	66					0	0	0.006122	0	0
NR1H3	10062	broad.mit.edu	37	11	47282910	47282910	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:47282910C>T	uc009ylm.2	+	5	839	c.618C>T	c.(616-618)CTC>CTT	p.L206L	NR1H3_uc009yll.1_Silent_p.L212L|NR1H3_uc010rhk.1_Silent_p.L212L|NR1H3_uc001nek.2_Silent_p.L161L|NR1H3_uc001nej.2_Silent_p.L206L|NR1H3_uc001nel.2_Silent_p.L161L|NR1H3_uc001nen.3_Silent_p.L206L|NR1H3_uc001nem.2_Silent_p.L206L|NR1H3_uc001nep.2_Silent_p.L115L	NM_005693	NP_005684	Q13133	NR1H3_HUMAN	nuclear receptor subfamily 1, group H, member 3	206					apoptotic cell clearance|cellular response to lipopolysaccharide|cholesterol homeostasis|negative regulation of cholesterol storage|negative regulation of inflammatory response|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of lipid transport|negative regulation of macrophage activation|negative regulation of pancreatic juice secretion|negative regulation of pinocytosis|negative regulation of secretion of lysosomal enzymes|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of cholesterol homeostasis|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor biosynthetic process|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of triglyceride biosynthetic process|regulation of circadian rhythm|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to progesterone stimulus|triglyceride homeostasis	nuclear chromatin|nucleoplasm	cholesterol binding|steroid hormone receptor activity|sterol response element binding|transcription coactivator activity|zinc ion binding			ovary(2)|lung(1)	3						TGCCCCAGCTCAGCCCGGAAC	0.597													18	17					0	0	0.008871	0	0
MADD	8567	broad.mit.edu	37	11	47330880	47330880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:47330880C>T	uc001ner.1	+	27	4171	c.3980C>T	c.(3979-3981)GCC>GTC	p.A1327V	MADD_uc001neq.2_Missense_Mutation_p.A1268V|MADD_uc001nev.1_Missense_Mutation_p.A1225V|MADD_uc001nes.1_Missense_Mutation_p.A1245V|MADD_uc001net.1_Missense_Mutation_p.A1288V|MADD_uc009yln.1_Missense_Mutation_p.A1221V|MADD_uc001neu.1_Missense_Mutation_p.A1225V|MADD_uc001nex.2_Missense_Mutation_p.A1327V|MADD_uc001nez.2_Missense_Mutation_p.A1224V|MADD_uc001new.2_Missense_Mutation_p.A1267V|MADD_uc009ylo.2_Missense_Mutation_p.A241V	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	1327					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		TGGGAAGATGCCTTCTTAGAT	0.443													22	40					0	0	0.002780	0	0
MYBPC3	4607	broad.mit.edu	37	11	47353667	47353667	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:47353667T>C	uc001nfa.3	-	32	3825	c.3770A>G	c.(3769-3771)AAC>AGC	p.N1257S		NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	1256	Ig-like C2-type 7.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		GCCCTGTAAGTTGGTGGCCCT	0.652													13	37					0	0	0.001368	0	0
OR4X2	119764	broad.mit.edu	37	11	48266730	48266730	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:48266730C>T	uc001ngs.1	+	1	75	c.75C>T	c.(73-75)TTC>TTT	p.F25F		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	25	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TATTTCTGTTCTTGTACACAG	0.453													51	83					0	0	0.003610	0	0
OR4X2	119764	broad.mit.edu	37	11	48266970	48266970	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:48266970C>T	uc001ngs.1	+	1	315	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGAGATTTTCCTGCTCACTG	0.498													30	62					0	0	0.001786	0	0
OR4C3	256144	broad.mit.edu	37	11	48346626	48346626	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:48346626A>G	uc010rhv.1	+	1	134	c.134A>G	c.(133-135)AAC>AGC	p.N45S		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTCTCACAGAACTCAGAGGTA	0.453													21	52					0	0	0.003330	0	0
OR4C3	256144	broad.mit.edu	37	11	48346654	48346654	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:48346654G>A	uc010rhv.1	+	1	162	c.162G>A	c.(160-162)GTG>GTA	p.V54V		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTCTCTTTGTGGTCTTTTTGC	0.463													16	53					0	0	0.003163	0	0
OR4C3	256144	broad.mit.edu	37	11	48347299	48347299	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:48347299C>T	uc010rhv.1	+	1	807	c.807C>T	c.(805-807)TTC>TTT	p.F269F		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GAGCCCACTTCATTGTTGTTG	0.438													27	83					0	0	0.006320	0	0
FOLH1	2346	broad.mit.edu	37	11	49175882	49175882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:49175882C>T	uc001ngy.2	-	16	2047	c.1786G>A	c.(1786-1788)GAT>AAT	p.D596N	FOLH1_uc001ngx.2_Missense_Mutation_p.D28N|FOLH1_uc001ngz.2_Missense_Mutation_p.D596N|FOLH1_uc009yly.2_Missense_Mutation_p.D581N|FOLH1_uc009ylz.2_Missense_Mutation_p.D581N|FOLH1_uc009yma.2_Missense_Mutation_p.D288N	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	596	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	TCTCGACAATCAAAAGGGAGC	0.383													11	28					0	0	0.008871	0	0
LOC646813	646813	broad.mit.edu	37	11	50379319	50379319	+	RNA	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:50379319T>C	uc001nhe.2	+	6		c.802T>C			LOC646813_uc001nhf.1_RNA|LOC646813_uc001nhg.1_RNA|LOC646813_uc001nhh.1_RNA|LOC646813_uc010rib.1_RNA	NR_024504				Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit09-11-09-R.												0						ACAGGAAAATTGCAACTTGAT	0.393													8	13					0	0	0.003080	0	0
OR4A5	81318	broad.mit.edu	37	11	51411660	51411660	+	Missense_Mutation	SNP	G	A	A	rs146541729		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:51411660G>A	uc001nhi.1	-	1	736	c.736C>T	c.(736-738)CTC>TTC	p.L246F		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	246	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				ACAAAAAAGAGGACAACAACG	0.403													11	28					0	0	0.008291	0	0
OR4C46	119749	broad.mit.edu	37	11	51515538	51515538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:51515538G>A	uc010ric.1	+	1	257	c.257G>A	c.(256-258)GGA>GAA	p.G86E		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCACTCTATGGAAAGAAGGCC	0.478													43	101					0	0	0.008740	0	0
OR4A15	81328	broad.mit.edu	37	11	55136058	55136058	+	Silent	SNP	G	A	A	rs141225150	byFrequency	TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:55136058G>A	uc010rif.1	+	1	699	c.699G>A	c.(697-699)GCG>GCA	p.A233A		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	233	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATGGAGGAGCGATTTGTGCTG	0.413													33	55					0	0	0.003755	0	0
OR5D18	219438	broad.mit.edu	37	11	55587477	55587477	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:55587477C>T	uc010rin.1	+	1	372	c.372C>T	c.(370-372)TTC>TTT	p.F124F		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	124	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				ATGACCGCTTCGTGGCCATTT	0.458													37	117					0	0	0.006230	0	0
OR5L2	26338	broad.mit.edu	37	11	55595297	55595297	+	Silent	SNP	G	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:55595297G>T	uc001nhy.1	+	1	603	c.603G>T	c.(601-603)CTG>CTT	p.L201L		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				TGCTGTTCCTGGTGGCCACTT	0.458										HNSCC(27;0.073)			49	96					3.05275e-18	3.43625e-18	0.003214	1	0
OR5M11	219487	broad.mit.edu	37	11	56310405	56310405	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:56310405T>G	uc010rjl.1	-	1	329	c.329A>C	c.(328-330)GAG>GCG	p.E110A		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATGTAAAACTCAGTGAGTAG	0.473													10	28					0	0	0.008291	0	0
OR5AP2	338675	broad.mit.edu	37	11	56409412	56409412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:56409412C>T	uc001njb.1	-	1	504	c.504G>A	c.(502-504)ATG>ATA	p.M168I		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	168	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						ACCTAAAAGTCATCCCTGTAT	0.458													24	88					0	0	0.003954	0	0
OR5AK2	390181	broad.mit.edu	37	11	56757235	56757235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:56757235C>T	uc010rjp.1	+	1	847	c.847C>T	c.(847-849)CCC>TCC	p.P283S		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						CACAGTTATTCCCATGTTAAA	0.318													18	33					0	0	0.008871	0	0
P2RX3	5024	broad.mit.edu	37	11	57115696	57115696	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:57115696G>A	uc001nju.2	+	5	520	c.444G>A	c.(442-444)GAG>GAA	p.E148E		NM_002559	NP_002550	P56373	P2RX3_HUMAN	purinergic receptor P2X3	148	Extracellular (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						GGACCTGTGAGATCCAGGGCT	0.572													8	20					0	0	0.000978	0	0
SERPING1	710	broad.mit.edu	37	11	57369508	57369508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:57369508G>A	uc001nkp.1	+	4	742	c.551G>A	c.(550-552)GGG>GAG	p.G184E	SERPING1_uc001nkq.1_Missense_Mutation_p.G184E|SERPING1_uc010rju.1_Missense_Mutation_p.G132E|SERPING1_uc010rjv.1_Missense_Mutation_p.G189E|SERPING1_uc001nkr.1_Missense_Mutation_p.G184E|SERPING1_uc009ymi.1_Missense_Mutation_p.G184E|SERPING1_uc009ymj.1_Missense_Mutation_p.G184E|SERPING1_uc001nks.1_5'UTR	NM_000062	NP_000053	P05155	IC1_HUMAN	serpin peptidase inhibitor, clade G, member 1	184					blood circulation|blood coagulation, intrinsic pathway|complement activation, classical pathway|innate immune response|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation	extracellular space|platelet alpha granule lumen	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)	1						TTTGTTGCAGGGGCTGGGGAG	0.557									Hereditary_Angioedema				9	31					0	0	0.006214	0	0
OR5B17	219965	broad.mit.edu	37	11	58125748	58125748	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:58125748G>A	uc010rke.1	-	1	795	c.795C>T	c.(793-795)TCC>TCT	p.S265S		NM_001005489	NP_001005489	Q8NGF7	OR5BH_HUMAN	olfactory receptor, family 5, subfamily B,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				CTGTGTCCATGGAATGACTGG	0.403													26	53					0	0	0.003330	0	0
OR5B2	390190	broad.mit.edu	37	11	58190410	58190410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:58190410C>T	uc010rkg.1	-	1	325	c.325G>A	c.(325-327)GAA>AAA	p.E109K		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AAGTAATTTTCCACCGTGGCC	0.517													20	53					0	0	0.001882	0	0
OR5B12	390191	broad.mit.edu	37	11	58206915	58206915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:58206915G>A	uc010rkh.1	-	1	710	c.710C>T	c.(709-711)TCT>TTT	p.S237F		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	237	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AGCACAAGTAGAAAAGGCCTT	0.418													11	24					0	0	0.001368	0	0
GLYAT	10249	broad.mit.edu	37	11	58477521	58477521	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:58477521G>A	uc001nnb.2	-	6	764	c.609C>T	c.(607-609)ACC>ACT	p.T203T		NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	203					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	AGGTGGGAAAGGTCTGAATGC	0.522													19	55					0	0	0.002299	0	0
OR4D11	219986	broad.mit.edu	37	11	59271645	59271645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:59271645G>A	uc001noa.1	+	1	597	c.597G>A	c.(595-597)ATG>ATA	p.M199I		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGTTCTTGATGATTTCCAACA	0.498													51	102					0	0	0.003610	0	0
OR4D9	390199	broad.mit.edu	37	11	59283138	59283138	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:59283138C>T	uc010rkv.1	+	1	753	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCCTGCATTTCGTGCCCTGCA	0.562													76	132					0	0	0.003610	0	0
PATL1	219988	broad.mit.edu	37	11	59415331	59415331	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:59415331C>G	uc001noe.3	-	15	1932	c.1789G>C	c.(1789-1791)GTT>CTT	p.V597L	PATL1_uc009yms.1_Missense_Mutation_p.V567L	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	597	Region C.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						ATACGGGCAACCATTCTCTTC	0.453													8	26					0	0	0.003080	0	0
MS4A6E	245802	broad.mit.edu	37	11	60105285	60105285	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:60105285C>T	uc001npd.2	+	2	233	c.219C>T	c.(217-219)GTC>GTT	p.V73V		NM_139249	NP_640342	Q96DS6	M4A6E_HUMAN	membrane-spanning 4-domains, subfamily A, member	73	Helical; (Potential).					integral to membrane	receptor activity				0						TCCTGTCTGTCAACCCGGCTG	0.458													32	83					0	0	0.002096	0	0
SLC22A25	387601	broad.mit.edu	37	11	62933731	62933731	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:62933731C>T	uc001nwr.1	-	7	1071	c.1071_splice	c.e7-1	p.R357_splice	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_Splice_Site|SLC22A25_uc001nws.1_Splice_Site|SLC22A25_uc001nwt.1_3'UTR	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter						transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						ACTTGCAAATCTGCAGGGAAC	0.433													14	29					0	0	0.004990	0	0
SLC22A25	387601	broad.mit.edu	37	11	62951228	62951228	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:62951228C>T	uc001nwr.1	-	5	892	c.892G>A	c.(892-894)GAA>AAA	p.E298K	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Missense_Mutation_p.E298K	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	298	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						TTTCTAAGTTCCTTTAAGCCC	0.498													65	108					0	0	0.003610	0	0
SLC22A10	387775	broad.mit.edu	37	11	63057749	63057749	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:63057749G>C	uc009yor.2	+	1	320	c.112G>C	c.(112-114)GAG>CAG	p.E38Q	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_Splice_Site|SLC22A10_uc010rmp.1_5'Flank	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	38	Extracellular (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						TATACTGCTAGAGAACTTTGC	0.448													18	58					0	0	0.008871	0	0
SLC22A10	387775	broad.mit.edu	37	11	63065199	63065199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:63065199G>A	uc009yor.2	+	4	1038	c.830G>A	c.(829-831)AGG>AAG	p.R277K	SLC22A10_uc010rmo.1_RNA|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Intron	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	277	Helical; (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						CTTCTTTCAAGGTAGGAGCTT	0.443													32	39					0	0	0.002096	0	0
SLC22A9	114571	broad.mit.edu	37	11	63141470	63141470	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:63141470C>T	uc001nww.2	+	4	1034	c.766C>T	c.(766-768)CGA>TGA	p.R256*	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	256	Extracellular (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						TTTTGCCATTCGAGACTGGCA	0.463													22	30					0	0	0.002299	0	0
SLC22A9	114571	broad.mit.edu	37	11	63143178	63143178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:63143178G>A	uc001nww.2	+	5	1160	c.892G>A	c.(892-894)GAA>AAA	p.E298K	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	298	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						AGGCTTAAAGGAACTTAGAAA	0.498													19	49					0	0	0.006122	0	0
ARL2	402	broad.mit.edu	37	11	64785862	64785862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:64785862C>T	uc001och.3	+	2	186	c.92C>T	c.(91-93)ACC>ATC	p.T31I	ARL2_uc010rnu.1_Missense_Mutation_p.T31I|SNX15_uc001oci.3_5'UTR	NM_001667	NP_001658	P36404	ARL2_HUMAN	ADP-ribosylation factor-like 2	31					cell cycle|centrosome organization|maintenance of protein location in nucleus|negative regulation of GTPase activity|positive regulation of cell-substrate adhesion|positive regulation of microtubule polymerization|small GTPase mediated signal transduction|tight junction assembly|tubulin complex assembly	centrosome|lateral plasma membrane|mitochondrial intermembrane space|nucleus	GTP binding|GTPase activity|GTPase inhibitor activity|protein binding				0						GGAAAGACAACCATCCTGAAG	0.582													4	9					0	0	0.000248	0	0
SYVN1	84447	broad.mit.edu	37	11	64897317	64897317	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:64897317C>T	uc001odb.2	-	14	1573	c.1479G>A	c.(1477-1479)GAG>GAA	p.E493E	SYVN1_uc001odc.2_Silent_p.E492E|SYVN1_uc009yqc.2_Silent_p.E441E	NM_172230	NP_757385	Q86TM6	SYVN1_HUMAN	synoviolin 1 isoform b	493	Cytoplasmic (Potential).				ER-associated protein catabolic process|response to stress	endoplasmic reticulum membrane|integral to membrane|nucleus	acid-amino acid ligase activity|protein binding|zinc ion binding			ovary(1)	1						GCTCATGGCCCTCCAGAGCTC	0.657													15	32					0	0	0.004990	0	0
PELI3	246330	broad.mit.edu	37	11	66243537	66243537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:66243537C>T	uc001oic.3	+	8	1473	c.1309C>T	c.(1309-1311)CAC>TAC	p.H437Y	PELI3_uc001oid.3_Missense_Mutation_p.H413Y|PELI3_uc001oie.3_Missense_Mutation_p.H288Y	NM_145065	NP_659502	Q8N2H9	PELI3_HUMAN	pellino 3 alpha isoform 1	437						cytosol	protein binding			ovary(1)	1						ACCACTGCCCCACGGCACCCA	0.662													10	16					0	0	0.000978	0	0
RBM14	10432	broad.mit.edu	37	11	66393997	66393997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:66393997C>T	uc001oit.2	+	3	2007	c.1868C>T	c.(1867-1869)TCG>TTG	p.S623L	RBM14_uc009yrh.2_3'UTR|RBM14_uc009yri.2_3'UTR|RBM4_uc009yrj.2_Intron|RBM4_uc009yrk.2_Intron	NM_006328	NP_006319	Q96PK6	RBM14_HUMAN	RNA binding motif protein 14	623					DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|histone deacetylation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus	mediator complex|ribonucleoprotein complex|transcription factor complex	ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|protein binding, bridging|RNA binding|RNA polymerase II transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						TCGCAGCTTTCGTTCCGCCGC	0.547													36	61					0	0	0.004878	0	0
NUMA1	4926	broad.mit.edu	37	11	71727571	71727571	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:71727571G>A	uc001orl.1	-	14	1297	c.1125C>T	c.(1123-1125)TGC>TGT	p.C375C	NUMA1_uc009ysw.1_5'Flank|NUMA1_uc001ork.1_Silent_p.C375C|NUMA1_uc001orm.1_Silent_p.C375C|NUMA1_uc001orn.2_5'Flank|NUMA1_uc009ysx.1_Silent_p.C375C|NUMA1_uc001oro.1_Silent_p.C375C	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	375	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						TCTCTTCAAGGCATTTCTGGG	0.512			T	RARA	APL								18	49					0	0	0.001882	0	0
PDE2A	5138	broad.mit.edu	37	11	72295960	72295960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:72295960C>T	uc010rrc.1	-	17	1558	c.1315G>A	c.(1315-1317)GAG>AAG	p.E439K	PDE2A_uc001oso.2_Missense_Mutation_p.E418K|PDE2A_uc010rra.1_Missense_Mutation_p.E432K|PDE2A_uc001osn.2_Missense_Mutation_p.E183K|PDE2A_uc010rrb.1_Missense_Mutation_p.E430K|PDE2A_uc010rrd.1_Missense_Mutation_p.E324K	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	439	GAF 2.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	GCCACCAGCTCATTCTGATCC	0.637													103	198					0	0	0.003610	0	0
MAP6	4135	broad.mit.edu	37	11	75319354	75319354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:75319354C>T	uc001owu.2	-	2	984	c.919G>A	c.(919-921)GCA>ACA	p.A307T	MAP6_uc001owv.2_Missense_Mutation_p.A307T	NM_033063	NP_149052	Q96JE9	MAP6_HUMAN	microtubule-associated protein 6 isoform 1	307	Calmodulin-binding (By similarity).|Mn 3.					Golgi apparatus|microtubule|perinuclear region of cytoplasm	calmodulin binding				0	Ovarian(111;0.11)					TCCGTCCATGCCCTGAATTCA	0.483													16	46					0	0	0.008871	0	0
ODZ4	26011	broad.mit.edu	37	11	78443603	78443603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:78443603C>T	uc001ozl.3	-	21	3359	c.2896G>A	c.(2896-2898)GGC>AGC	p.G966S		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	966	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GAGATGCCGCCATTTGTCACC	0.542													10	20					0	0	0.006214	0	0
PCF11	51585	broad.mit.edu	37	11	82877030	82877030	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:82877030C>T	uc001ozx.3	+	5	1436	c.1091C>T	c.(1090-1092)TCG>TTG	p.S364L	PCF11_uc010rsu.1_Missense_Mutation_p.S364L	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	364	Lys-rich.				mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						GATTCTAAATCGAAATCGAAA	0.313													15	25					0	0	0.004007	0	0
DLG2	1740	broad.mit.edu	37	11	84245714	84245714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:84245714C>T	uc001paj.2	-	2	406	c.103G>A	c.(103-105)GAA>AAA	p.E35K	DLG2_uc010rsz.1_Missense_Mutation_p.E35K|DLG2_uc010rta.1_Missense_Mutation_p.E35K|DLG2_uc001pak.2_Missense_Mutation_p.E140K|DLG2_uc001pal.1_Missense_Mutation_p.E35K	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	35						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding	p.E35E(1)		ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				CCTCTTACTTCGTGGGTTAGT	0.398													36	70					0	0	0.003755	0	0
CCDC81	60494	broad.mit.edu	37	11	86086284	86086284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:86086284G>A	uc001pbx.1	+	1	507	c.79G>A	c.(79-81)GAA>AAA	p.E27K	CCDC81_uc001pbw.1_Missense_Mutation_p.E27K	NM_001156474	NP_001149946	Q6ZN84	CCD81_HUMAN	coiled-coil domain containing 81 isoform 1	27										skin(1)	1		Acute lymphoblastic leukemia(157;5.51e-06)|all_hematologic(158;0.00535)				GAGCCAGGAGGGTAAGCGTGT	0.637													53	115					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	11	89774476	89774476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:89774476G>A	uc010rua.1	+	7	1240	c.1117G>A	c.(1117-1119)GGA>AGA	p.G373R		NM_020358	NP_065091			ring finger protein 18																		GAAGATAGATGGAAAGGAGGG	0.423													9	38					0	0	0.008291	0	0
NAALAD2	10003	broad.mit.edu	37	11	89916124	89916124	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:89916124C>T	uc001pdf.3	+	18	2090	c.1981C>T	c.(1981-1983)CTG>TTG	p.L661L	NAALAD2_uc009yvx.2_Silent_p.L628L|NAALAD2_uc009yvy.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	661	Extracellular (Potential).				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				ACTGATGCTCCTGGAAAGAGC	0.408													44	108					0	0	0.003610	0	0
FAT3	120114	broad.mit.edu	37	11	92539573	92539573	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:92539573A>T	uc001pdj.3	+	11	9156	c.9139A>T	c.(9139-9141)ATC>TTC	p.I3047F		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3047	Cadherin 28.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATCAAATAAAATCATCCTGAA	0.368										TCGA Ovarian(4;0.039)			70	351					0	0	0.003610	0	0
FAT3	120114	broad.mit.edu	37	11	92577503	92577503	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:92577503C>T	uc001pdj.3	+	18	10987	c.10970C>T	c.(10969-10971)TCC>TTC	p.S3657F	FAT3_uc001pdi.3_Missense_Mutation_p.S97F	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3657	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GAAAATGTGTCCCCTGAGGAC	0.572										TCGA Ovarian(4;0.039)			165	328					0	0	0.003610	0	0
CNTN5	53942	broad.mit.edu	37	11	100170010	100170010	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:100170010C>T	uc001pga.2	+	20	2841	c.2502C>T	c.(2500-2502)TTC>TTT	p.F834F	CNTN5_uc001pfz.2_Silent_p.F834F|CNTN5_uc001pgb.2_Silent_p.F760F|CNTN5_uc010ruk.1_Silent_p.F105F	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	834	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CTTCCAAATTCATTTATCGAG	0.428													17	50					0	0	0.007413	0	0
PGR	5241	broad.mit.edu	37	11	100912815	100912815	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:100912815C>T	uc001pgh.2	-	7	3250	c.2507G>A	c.(2506-2508)CGA>CAA	p.R836Q	PGR_uc001pgg.2_Missense_Mutation_p.R217Q|PGR_uc001pgi.2_Missense_Mutation_p.R734Q|PGR_uc009yww.1_RNA|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	836	Steroid-binding.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	GGTTTGACTTCGTAGCCCTTC	0.383													18	29					0	0	0.001523	0	0
MMP12	4321	broad.mit.edu	37	11	102736603	102736603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:102736603G>A	uc001phk.2	-	9	1154	c.1109C>T	c.(1108-1110)TCT>TTT	p.S370F		NM_002426	NP_002417	P39900	MMP12_HUMAN	matrix metalloproteinase 12 preproprotein	370	Hemopexin-like 2.				positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	AAAACCAAAAGAATGTATGCT	0.328													14	41					0	0	0.003163	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103039681	103039681	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:103039681G>T	uc001pho.2	+	32	5104	c.4960G>T	c.(4960-4962)GAA>TAA	p.E1654*	DYNC2H1_uc001phn.1_Nonsense_Mutation_p.E1654*|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	1654	AAA 1 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		GTATACTTATGAATATCAGGT	0.279													15	21					1.62849e-17	1.83193e-17	0.004007	1	0
DYNC2H1	79659	broad.mit.edu	37	11	103173892	103173892	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:103173892C>T	uc001pho.2	+	76	11310	c.11166C>T	c.(11164-11166)CCC>CCT	p.P3722P	DYNC2H1_uc001phn.1_Silent_p.P3729P|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	3722	AAA 6 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		AAATTGAACCCATCTTGATAA	0.363													20	25					0	0	0.008871	0	0
CWF19L2	143884	broad.mit.edu	37	11	107224410	107224410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:107224410G>A	uc010rvp.1	-	13	1955	c.1925C>T	c.(1924-1926)TCC>TTC	p.S642F	CWF19L2_uc001pjh.3_RNA|CWF19L2_uc009yxo.2_Intron	NM_152434	NP_689647	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control	642							catalytic activity				0		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		AGCTGCTTTGGAGACAAACAT	0.398													34	31					0	0	0.004878	0	0
NCAM1	4684	broad.mit.edu	37	11	113102975	113102975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:113102975C>T	uc009yyq.1	+	12	1742	c.1048C>T	c.(1048-1050)CCC>TCC	p.P350S		NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	442	Ig-like C2-type 5.|Extracellular (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		ATTTGCCTATCCCAGTGCCAC	0.517													17	15					0	0	0.004007	0	0
ZBTB16	7704	broad.mit.edu	37	11	114027098	114027098	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:114027098C>T	uc001pop.2	+	3	1572	c.1308C>T	c.(1306-1308)CTC>CTT	p.L436L	ZBTB16_uc001poo.1_Silent_p.L436L|ZBTB16_uc001poq.2_Silent_p.L436L	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	436	C2H2-type 2.				apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		GGTGCGAGCTCTGCGGGAAGC	0.557													22	17					0	0	0.007291	0	0
ZBTB16	7704	broad.mit.edu	37	11	114121187	114121187	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:114121187C>T	uc001pop.2	+	7	2196	c.1932C>T	c.(1930-1932)TCC>TCT	p.S644S	ZBTB16_uc001poq.2_Silent_p.S644S	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	644	C2H2-type 9.				apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		GCCTCTCCTCCATGCAGAAGC	0.607													13	19					0	0	0.001368	0	0
RNF214	257160	broad.mit.edu	37	11	117152757	117152757	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:117152757C>T	uc001pqt.2	+	11	1528	c.1483C>T	c.(1483-1485)CAG>TAG	p.Q495*	RNF214_uc001pqu.2_Nonsense_Mutation_p.Q495*|RNF214_uc010rxf.1_Nonsense_Mutation_p.Q340*	NM_207343	NP_997226	Q8ND24	RN214_HUMAN	ring finger protein 214	495	Pro-rich.						zinc ion binding				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.88e-05)|Epithelial(105;0.000397)|all cancers(92;0.00258)		TGCCCTTTCCCAGCCCAGCCA	0.612													82	60					0	0	0.003610	0	0
DSCAML1	57453	broad.mit.edu	37	11	117651428	117651428	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:117651428C>T	uc001prh.1	-	2	326	c.324G>A	c.(322-324)CCG>CCA	p.P108P	DSCAML1_uc001pri.1_5'UTR	NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	48	Extracellular (Potential).|Ig-like C2-type 1.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		AGCCCGCGGCCGGGCAGGGCA	0.662													19	24					0	0	0.008871	0	0
AMICA1	120425	broad.mit.edu	37	11	118074226	118074226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:118074226C>T	uc001psk.2	-	6	863	c.689G>A	c.(688-690)GGA>GAA	p.G230E	AMICA1_uc001psg.2_Missense_Mutation_p.G40E|AMICA1_uc001psh.2_Missense_Mutation_p.G191E|AMICA1_uc009yzw.1_RNA|AMICA1_uc001psi.2_Missense_Mutation_p.G220E|AMICA1_uc001psj.2_Missense_Mutation_p.G219E|AMICA1_uc010rxw.1_Missense_Mutation_p.G191E|AMICA1_uc010rxx.1_Missense_Mutation_p.G230E|AMICA1_uc001psl.1_Missense_Mutation_p.G186E	NM_001098526	NP_001091996	Q86YT9	JAML1_HUMAN	adhesion molecule, interacts with CXADR antigen	230	Ig-like V-type 2.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	cell junction|integral to membrane				ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		GGTGTAGTTTCCTCCATCTGA	0.517													59	74					0	0	0.003610	0	0
OR6X1	390260	broad.mit.edu	37	11	123624355	123624355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:123624355C>T	uc010rzy.1	-	1	872	c.872G>A	c.(871-873)AGA>AAA	p.R291K		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	291	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		CTCCTTGTTTCTAATAGTATA	0.418													61	74					0	0	0.003610	0	0
OR8B4	283162	broad.mit.edu	37	11	124294506	124294506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:124294506C>T	uc010sak.1	-	1	262	c.262G>A	c.(262-264)GAA>AAA	p.E88K		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		ATGATACTTTCTGAAACAAAG	0.388													21	18					0	0	0.001882	0	0
OR8A1	390275	broad.mit.edu	37	11	124440898	124440898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:124440898G>A	uc010san.1	+	1	934	c.934G>A	c.(934-936)GAA>AAA	p.E312K		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	312	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		GAGGAACAAGGAAGTAAAGGC	0.433													7	28					0	0	0.003080	0	0
VSIG2	23584	broad.mit.edu	37	11	124619748	124619748	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:124619748G>A	uc001qas.2	-	4	518	c.442C>T	c.(442-444)CCC>TCC	p.P148S	VSIG2_uc001qat.2_Missense_Mutation_p.P148S	NM_014312	NP_055127	Q96IQ7	VSIG2_HUMAN	V-set and immunoglobulin domain containing 2	148	Extracellular (Potential).|Ig-like C2-type.					integral to plasma membrane|membrane fraction				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.215)	Breast(109;0.00663)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0215)		CTGCATAAGGGATTACTGGGG	0.343													21	23					0	0	0.008871	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128850516	128850516	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr11:128850516G>A	uc009zcp.2	-	17	1866	c.1866C>T	c.(1864-1866)ATC>ATT	p.I622I	ARHGAP32_uc009zcq.1_Silent_p.I582I|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_Silent_p.I273I	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	622					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						CTCCTACTTCGATATATTTAT	0.418													41	29					0	0	0.002222	0	0
CACNA1C	775	broad.mit.edu	37	12	2693758	2693758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:2693758G>A	uc009zdu.1	+	16	2627	c.2314G>A	c.(2314-2316)GAG>AAG	p.E772K	CACNA1C_uc009zdv.1_Missense_Mutation_p.E769K|CACNA1C_uc001qkb.2_Missense_Mutation_p.E772K|CACNA1C_uc001qkc.2_Missense_Mutation_p.E772K|CACNA1C_uc001qke.2_Missense_Mutation_p.E772K|CACNA1C_uc001qkf.2_Missense_Mutation_p.E772K|CACNA1C_uc001qjz.2_Missense_Mutation_p.E772K|CACNA1C_uc001qkd.2_Missense_Mutation_p.E772K|CACNA1C_uc001qkg.2_Missense_Mutation_p.E772K|CACNA1C_uc009zdw.1_Missense_Mutation_p.E772K|CACNA1C_uc001qkh.2_Missense_Mutation_p.E772K|CACNA1C_uc001qkl.2_Missense_Mutation_p.E772K|CACNA1C_uc001qkn.2_Missense_Mutation_p.E772K|CACNA1C_uc001qko.2_Missense_Mutation_p.E772K|CACNA1C_uc001qkp.2_Missense_Mutation_p.E772K|CACNA1C_uc001qkr.2_Missense_Mutation_p.E772K|CACNA1C_uc001qku.2_Missense_Mutation_p.E772K|CACNA1C_uc001qkq.2_Missense_Mutation_p.E772K|CACNA1C_uc001qks.2_Missense_Mutation_p.E772K|CACNA1C_uc001qkt.2_Missense_Mutation_p.E772K|CACNA1C_uc001qka.1_Missense_Mutation_p.E307K|CACNA1C_uc001qki.1_Missense_Mutation_p.E508K|CACNA1C_uc001qkj.1_Missense_Mutation_p.E508K|CACNA1C_uc001qkk.1_Missense_Mutation_p.E508K|CACNA1C_uc001qkm.1_Missense_Mutation_p.E508K|CACNA1C_uc001qkw.2_Missense_Mutation_p.E61K	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	772	Cytoplasmic (Potential).|Poly-Glu.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	ggaggaagaggagaaggagag	0.463													18	47					0	0	0.007413	0	0
PRMT8	56341	broad.mit.edu	37	12	3678727	3678727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:3678727C>T	uc001qmf.2	+	6	1076	c.709C>T	c.(709-711)CAC>TAC	p.H237Y	PRMT8_uc009zed.2_Missense_Mutation_p.H228Y|PRMT8_uc009zee.1_RNA|PRMT8_uc001qmg.2_Missense_Mutation_p.H51Y	NM_019854	NP_062828	Q9NR22	ANM8_HUMAN	HMT1 hnRNP methyltransferase-like 4	237					regulation of protein binding	cytoplasm|plasma membrane	histone-arginine N-methyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein-arginine omega-N asymmetric methyltransferase activity|protein-arginine omega-N monomethyltransferase activity			ovary(3)|central_nervous_system(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(31;0.0109)|COAD - Colon adenocarcinoma(12;0.0264)			CTTCAAAATCCACTGTAAGTC	0.522													31	59					0	0	0.001786	0	0
EFCAB4B	84766	broad.mit.edu	37	12	3806072	3806072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:3806072G>A	uc001qmj.2	-	4	666	c.94C>T	c.(94-96)CCC>TCC	p.P32S	EFCAB4B_uc010sen.1_Missense_Mutation_p.P32S|EFCAB4B_uc010seo.1_Missense_Mutation_p.P32S	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	32					activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			CTGTCCAGGGGATGCAGGCAG	0.612													13	28					0	0	0.001855	0	0
GALNT8	26290	broad.mit.edu	37	12	4873136	4873136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:4873136G>A	uc001qne.1	+	9	1608	c.1516G>A	c.(1516-1518)GAA>AAA	p.E506K		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	506	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						CCTATTGGATGAAAATGTCTG	0.493													22	61					0	0	0.002780	0	0
KCNA1	3736	broad.mit.edu	37	12	5021334	5021335	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:5021334_5021335CC>TT	uc001qnh.2	+	2	1895_1896	c.790_791CC>TT	c.(790-792)CCT>TTT	p.P264F		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	264	Helical; Name=Segment S3; (Potential).				synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGCCATCATTCCTTATTTCATC	0.545													38	46					0	0	0.004672	0	0
KCNA1	3736	broad.mit.edu	37	12	5021486	5021486	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:5021486C>T	uc001qnh.2	+	2	2047	c.942C>T	c.(940-942)ATC>ATT	p.I314I		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	314					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GCCTCCAGATCCTGGGCCAGA	0.547													20	40					0	0	0.005443	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6427944	6427944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:6427944C>T	uc001qnr.2	+	12	1457	c.1309C>T	c.(1309-1311)CTC>TTC	p.L437F	PLEKHG6_uc001qns.2_Missense_Mutation_p.L437F|PLEKHG6_uc010sew.1_Missense_Mutation_p.L437F|PLEKHG6_uc010sex.1_Missense_Mutation_p.L405F	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	437	PH.				regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						CTCTGATGTGCTCCTTGTGAC	0.642													22	37					0	0	0.002299	0	0
C1RL	51279	broad.mit.edu	37	12	7249655	7249655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:7249655C>T	uc001qsn.2	-	6	813	c.796G>A	c.(796-798)GGC>AGC	p.G266S	C1RL_uc009zft.2_Silent_p.T281T	NM_016546	NP_057630	Q9NZP8	C1RL_HUMAN	complement component 1, r subcomponent-like	266	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis		serine-type endopeptidase activity			pancreas(1)	1						CCCCCACGGCCGTGGATACTG	0.617													17	27					0	0	0.006122	0	0
CD163L1	283316	broad.mit.edu	37	12	7520754	7520754	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:7520754A>C	uc001qsy.2	-	17	4138	c.4112T>G	c.(4111-4113)CTT>CGT	p.L1371R	CD163L1_uc010sge.1_Missense_Mutation_p.L1381R	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	1371	Helical; (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AACCAGGAGAAGGAGCCCAAA	0.373													16	40					0	0	0.004990	0	0
CD163	9332	broad.mit.edu	37	12	7647853	7647853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:7647853C>T	uc001qsz.3	-	6	1372	c.1244G>A	c.(1243-1245)GGA>GAA	p.G415E	CD163_uc001qta.3_Missense_Mutation_p.G415E|CD163_uc009zfw.2_Missense_Mutation_p.G415E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	415	SRCR 4.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						AGATCCACATCCCAGCTGCCT	0.468													29	75					0	0	0.002096	0	0
A2M	2	broad.mit.edu	37	12	9230360	9230360	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:9230360G>A	uc001qvk.1	-	26	3326	c.3213C>T	c.(3211-3213)TCC>TCT	p.S1071S	A2M_uc001qvj.1_Silent_p.S113S|A2M_uc009zgk.1_Silent_p.S921S	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	1071					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	TCTGCCTCTGGGAGAGCCATA	0.478													33	48					0	0	0.006230	0	0
PRB4	5545	broad.mit.edu	37	12	11461474	11461474	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:11461474C>T	uc001qzf.1	-	3	477	c.443G>A	c.(442-444)GGA>GAA	p.G148E	PRB4_uc001qzt.2_Missense_Mutation_p.G148E	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	211	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|9.					extracellular region				ovary(1)	1						CTGGTTACCTCCTTGTGGGGG	0.607										HNSCC(22;0.051)			74	198					0	0	0.003610	0	0
PRB1	5542	broad.mit.edu	37	12	11506687	11506687	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:11506687T>C	uc001qzw.1	-	3	387	c.350A>G	c.(349-351)AAG>AGG	p.K117R	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	178	7.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TCCTTGTGGCTTTCCTGGAGG	0.612													66	334					0	0	0.003610	0	0
PRB2	653247	broad.mit.edu	37	12	11546774	11546774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:11546774C>T	uc010shk.1	-	3	273	c.238G>A	c.(238-240)GGA>AGA	p.G80R		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGGGGTGGTCCTTGTGGCTTT	0.612													89	210					0	0	0.003610	0	0
GPRC5A	9052	broad.mit.edu	37	12	13061552	13061552	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:13061552C>T	uc001rba.2	+	2	1019	c.369C>T	c.(367-369)GTC>GTT	p.V123V	GPRC5A_uc001raz.2_Silent_p.V123V	NM_003979	NP_003970	Q8NFJ5	RAI3_HUMAN	G protein-coupled receptor, family C, group 5,	123	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|Golgi apparatus|integral to plasma membrane	G-protein coupled receptor activity				0		Prostate(47;0.141)		BRCA - Breast invasive adenocarcinoma(232;0.0708)	Tretinoin(DB00755)	CCAAGCTCGTCCGGGGGAGGA	0.557													68	146					0	0	0.003610	0	0
GUCY2C	2984	broad.mit.edu	37	12	14813932	14813932	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:14813932G>A	uc001rcd.2	-	11	1484	c.1347C>T	c.(1345-1347)GTC>GTT	p.V449V		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	449	Helical; (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						TCAGGAGAGCGACGAGCAGGA	0.547													31	72					0	0	0.006230	0	0
ART4	420	broad.mit.edu	37	12	14993629	14993629	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:14993629G>A	uc001rcl.1	-	2	969	c.603C>T	c.(601-603)ACC>ACT	p.T201T	ART4_uc009zid.1_Intron|ART4_uc009zie.1_Intron|ART4_uc001rcm.1_Silent_p.T201T	NM_021071	NP_066549	Q93070	NAR4_HUMAN	ADP-ribosyltransferase 4 precursor	201					arginine metabolic process|protein ADP-ribosylation	anchored to membrane|plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity				0						CAAATCGAATGGTGGCCCCTG	0.498													19	37					0	0	0.008871	0	0
PTPRO	5800	broad.mit.edu	37	12	15637040	15637040	+	Missense_Mutation	SNP	G	A	A	rs147697088		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:15637040G>A	uc001rcv.1	+	2	382	c.208G>A	c.(208-210)GAA>AAA	p.E70K	PTPRO_uc001rcw.1_Missense_Mutation_p.E70K|PTPRO_uc001rcu.1_Missense_Mutation_p.E70K	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	70	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				TTATTTCTTCGAATTTGAGGA	0.368													20	55					0	0	0.001523	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18691241	18691241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:18691241G>A	uc001rdt.2	+	24	3468	c.3352G>A	c.(3352-3354)GAA>AAA	p.E1118K	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.E1159K|PIK3C2G_uc010sic.1_Missense_Mutation_p.E937K	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1118	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				GAACCTGCTGGAAATGGTAAG	0.393													24	48					0	0	0.005443	0	0
PDE3A	5139	broad.mit.edu	37	12	20766429	20766429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:20766429G>A	uc001reh.1	+	3	1086	c.1064G>A	c.(1063-1065)GGC>GAC	p.G355D		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	355				HGLITDLLADPSLPPNVC -> TASLPTSWQTLLFHQTCA (in Ref. 3 and 4).	lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	GAGGCCCACGGCCTCATTACC	0.542													32	59					0	0	0.002445	0	0
ABCC9	10060	broad.mit.edu	37	12	21960391	21960391	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:21960391C>T	uc001rfi.1	-	36	4358	c.4338G>A	c.(4336-4338)GGG>GGA	p.G1446G	ABCC9_uc001rfh.2_Silent_p.G1446G|ABCC9_uc001rfj.1_Silent_p.G1410G|ABCC9_uc001rfg.2_5'UTR	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1446	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity	p.G1446W(1)		ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TAAAATTCTCCCCACCTTCAG	0.418													17	51					0	0	0.006122	0	0
C12orf71	728858	broad.mit.edu	37	12	27235198	27235198	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:27235198T>G	uc001rhq.2	-	1	258	c.219A>C	c.(217-219)CAA>CAC	p.Q73H		NM_001080406	NP_001073875	A8MTZ7	CL071_HUMAN	hypothetical protein LOC728858	73											0						GAATTTGGTCTTGTCTCTTCA	0.517													16	24					0	0	0.004007	0	0
Unknown	0	broad.mit.edu	37	12	31310951	31310951	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:31310951C>T	uc010sjy.1	-	6	664	c.664G>A	c.(664-666)GAT>AAT	p.D222N						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		AATTCATCATCTGAAATAGTT	0.403													27	55					0	0	0.001786	0	0
DENND5B	160518	broad.mit.edu	37	12	31566412	31566412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:31566412G>A	uc001rki.1	-	13	2825	c.2639C>T	c.(2638-2640)TCC>TTC	p.S880F	DENND5B_uc001rkh.1_Missense_Mutation_p.S915F|DENND5B_uc009zjq.1_Intron	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	880	RUN 1.					integral to membrane				ovary(1)|central_nervous_system(1)	2						AAGATGCTGGGACAAGAGCTT	0.403													24	65					0	0	0.002780	0	0
PKP2	5318	broad.mit.edu	37	12	32955454	32955454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:32955454C>T	uc001rlj.3	-	11	2297	c.2182G>A	c.(2182-2184)GAA>AAA	p.E728K	PKP2_uc001rlk.3_Missense_Mutation_p.E684K|PKP2_uc010skj.1_Missense_Mutation_p.E681K	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	728	ARM 6.				cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					AGGCCACTTTCCTTCTGGACA	0.453													42	95					0	0	0.002852	0	0
PKP2	5318	broad.mit.edu	37	12	32975492	32975492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:32975492G>A	uc001rlj.3	-	9	1995	c.1880C>T	c.(1879-1881)TCC>TTC	p.S627F	PKP2_uc001rlk.3_Missense_Mutation_p.S583F|PKP2_uc010skj.1_Missense_Mutation_p.S583F	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	627					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					GATATTCTGGGAATATTTCTC	0.413													24	38					0	0	0.002299	0	0
PKP2	5318	broad.mit.edu	37	12	32996245	32996245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:32996245G>A	uc001rlj.3	-	6	1496	c.1381C>T	c.(1381-1383)CAT>TAT	p.H461Y	PKP2_uc001rlk.3_Intron|PKP2_uc010skj.1_Intron	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	461	ARM 3.				cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TTGACTGTATGGTCTGTACAA	0.289													21	53					0	0	0.001882	0	0
C12orf40	283461	broad.mit.edu	37	12	40114937	40114937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:40114937G>A	uc001rmc.2	+	13	2010	c.1843G>A	c.(1843-1845)GAT>AAT	p.D615N	C12orf40_uc009zjv.1_Intron	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	615										ovary(6)	6						CATACAGTGTGATCTAATTTC	0.408													20	52					0	0	0.008871	0	0
LRRK2	120892	broad.mit.edu	37	12	40643657	40643657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:40643657G>A	uc001rmg.3	+	8	989	c.868G>A	c.(868-870)GAA>AAA	p.E290K	LRRK2_uc001rmh.1_5'Flank	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	290					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				GGTATTAAACGAAGTCCATGA	0.388													19	31					0	0	0.006122	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43860460	43860460	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:43860460G>A	uc010skx.1	-	9	1362	c.1362C>T	c.(1360-1362)TTC>TTT	p.F454F		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	454	Peptidase M12B.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CTTACTCTAGGAATTCAGTAA	0.299													24	48					0	0	0.004656	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43860504	43860504	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:43860504G>A	uc010skx.1	-	9	1318	c.1318C>T	c.(1318-1320)CCT>TCT	p.P440S		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	440	Peptidase M12B.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CAGCTCCAAGGACTCATGTGA	0.318													30	54					0	0	0.002836	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45457365	45457365	+	RNA	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:45457365C>T	uc001rol.2	-	1		c.1830G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						GGAACAGACTCCCTGTGACAG	0.473													16	24					0	0	0.008871	0	0
ARID2	196528	broad.mit.edu	37	12	46230605	46230605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:46230605G>A	uc001ros.1	+	8	854	c.854G>A	c.(853-855)CGG>CAG	p.R285Q	ARID2_uc001ror.2_Missense_Mutation_p.R285Q|ARID2_uc009zkg.1_5'UTR|ARID2_uc009zkh.1_5'Flank|ARID2_uc001rot.1_5'UTR	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	285					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		GAAGGACAGCGGGTACTTCAG	0.403													24	64					0	0	0.003954	0	0
ARID2	196528	broad.mit.edu	37	12	46244079	46244079	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:46244079C>T	uc001ros.1	+	15	2173	c.2173C>T	c.(2173-2175)CAG>TAG	p.Q725*	ARID2_uc001ror.2_Nonsense_Mutation_p.Q725*|ARID2_uc009zkg.1_Nonsense_Mutation_p.Q181*|ARID2_uc009zkh.1_Nonsense_Mutation_p.Q352*|ARID2_uc001rou.1_Nonsense_Mutation_p.Q59*	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	725					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TTCCATACCCCAGACAGGAGT	0.443													32	71					0	0	0.003755	0	0
SLC38A1	81539	broad.mit.edu	37	12	46598324	46598324	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:46598324G>A	uc001rpa.2	-	10	954	c.696C>T	c.(694-696)TTC>TTT	p.F232F	SLC38A1_uc001rpb.2_Silent_p.F232F|SLC38A1_uc001rpc.2_Silent_p.F232F|SLC38A1_uc001rpd.2_Silent_p.F232F|SLC38A1_uc001rpe.2_Silent_p.F232F|SLC38A1_uc010slh.1_Silent_p.F205F|SLC38A1_uc009zkj.1_Silent_p.F232F	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	232	Helical; (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			CCACAATTAGGAAAAAAACCA	0.269													71	135					0	0	0.003610	0	0
AMIGO2	347902	broad.mit.edu	37	12	47472504	47472504	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:47472504C>T	uc001rpm.2	-	3	937	c.282G>A	c.(280-282)AAG>AAA	p.K94K	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Silent_p.K94K|AMIGO2_uc001rpl.2_Silent_p.K94K	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	94	Extracellular (Potential).|LRR 2.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					GGGTGTTCAGCTTTGCAAACG	0.428													27	60					0	0	0.005443	0	0
FAM113B	91523	broad.mit.edu	37	12	47629803	47629803	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:47629803G>A	uc001rpn.2	+	4	1688	c.957G>A	c.(955-957)CAG>CAA	p.Q319Q	FAM113B_uc001rpq.2_Silent_p.Q319Q	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	319	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					tgtccccacagcctcctcctc	0.234													37	80					0	0	0.004289	0	0
COL2A1	1280	broad.mit.edu	37	12	48375178	48375179	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:48375178_48375179CC>TT	uc001rqu.2	-	37	2591_2592	c.2410_2411GG>AA	c.(2410-2412)GGA>AAA	p.G804K	COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.G735K	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	804	Triple-helical region.		G -> A (in hypochondrogenesis).		axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	TCCAACTTCTCCCTGAGGGTGG	0.653													8	25					0	0	0.004672	0	0
H1FNT	341567	broad.mit.edu	37	12	48723794	48723794	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:48723794G>A	uc001rrm.2	+	1	1032	c.720G>A	c.(718-720)AGG>AGA	p.R240R		NM_181788	NP_861453	Q75WM6	H1FNT_HUMAN	H1 histone family, member N, testis-specific	240					chromosome condensation|multicellular organismal development|sperm chromatin condensation|spermatid nucleus elongation	nuclear chromatin	ATP binding|DNA binding			pancreas(1)	1						CCAAGCCCAGGGAAGAGAAGC	0.642													7	7					0	0	0.006214	0	0
MLL2	8085	broad.mit.edu	37	12	49445153	49445153	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:49445153G>A	uc001rta.3	-	10	2313	c.2313C>T	c.(2311-2313)TCC>TCT	p.S771S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	771	Pro-rich.			Missing (in Ref. 1; AAC51734).	chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CAGGCTGGGGGGACAGGTGTG	0.682			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			14	25					0	0	0.004007	0	0
LARP4	113251	broad.mit.edu	37	12	50860828	50860828	+	Silent	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:50860828T>C	uc001rwp.1	+	13	1614	c.1470T>C	c.(1468-1470)AGT>AGC	p.S490S	LARP4_uc001rwo.1_Silent_p.S496S|LARP4_uc001rwq.1_Silent_p.S419S|LARP4_uc001rwr.1_Silent_p.S419S|LARP4_uc001rws.1_Silent_p.S489S|LARP4_uc009zlr.1_Silent_p.S309S|LARP4_uc001rwt.1_Silent_p.S81S	NM_052879	NP_443111	Q71RC2	LARP4_HUMAN	c-Mpl binding protein isoform a	490							nucleotide binding|RNA binding			ovary(1)	1						TACCTGGAAGTTCATCAAGAA	0.393													21	44					0	0	0.002299	0	0
TFCP2	7024	broad.mit.edu	37	12	51512486	51512486	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:51512486G>A	uc001rxw.2	-	2	651	c.192C>T	c.(190-192)ATC>ATT	p.I64I	TFCP2_uc001rxv.1_Silent_p.I64I|TFCP2_uc009zlx.1_Silent_p.I64I|TFCP2_uc001rxx.2_Silent_p.I64I|TFCP2_uc009zly.1_5'UTR	NM_005653	NP_005644	Q12800	TFCP2_HUMAN	transcription factor CP2	64					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GAAAAGGCAGGATTTTATTCT	0.383													24	58					0	0	0.003330	0	0
BIN2	51411	broad.mit.edu	37	12	51695812	51695812	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:51695812C>T	uc001ryg.2	-	5	452	c.400G>A	c.(400-402)GAA>AAA	p.E134K	BIN2_uc009zlz.2_Intron|BIN2_uc001ryh.2_Missense_Mutation_p.E10K|BIN2_uc010sng.1_Missense_Mutation_p.E108K	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	134	BAR.					cytoplasm	protein binding			ovary(1)	1						ACCTTAATTTCACTGAACTGG	0.418													9	27					0	0	0.004482	0	0
KRT5	3852	broad.mit.edu	37	12	52910428	52910428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:52910428C>T	uc001san.2	-	7	1595	c.1432G>A	c.(1432-1434)GAA>AAA	p.E478K	KRT5_uc009zmh.2_Missense_Mutation_p.E478K	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	478	Tail.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		CACCTGCATTCCTCGCCCTCC	0.557													20	39					0	0	0.001882	0	0
KRT1	3848	broad.mit.edu	37	12	53073632	53073632	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:53073632C>T	uc001sau.1	-	1	560	c.501G>A	c.(499-501)GTG>GTA	p.V167V	KRT1_uc001sav.1_Silent_p.V167V	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	167	Head.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						GGTCAATCTCCACATTGAGGG	0.448													40	90					0	0	0.003214	0	0
KRT76	51350	broad.mit.edu	37	12	53165697	53165697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:53165697C>T	uc001sax.2	-	6	1275	c.1221G>A	c.(1219-1221)ATG>ATA	p.M407I		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	407	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						GCCTCTGGATCATCCTGTTGA	0.557													33	74					0	0	0.003271	0	0
KRT78	196374	broad.mit.edu	37	12	53238393	53238393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:53238393C>T	uc001sbc.1	-	5	935	c.871G>A	c.(871-873)GAG>AAG	p.E291K		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	291	Coil 2.|Rod.					keratin filament	protein binding|structural molecule activity	p.E291*(1)		ovary(2)	2						CGGGCGATCTCCTCGTACCGG	0.622													10	49					0	0	0.006214	0	0
KIAA0748	9840	broad.mit.edu	37	12	55360174	55360174	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:55360174G>A	uc001sgn.3	-	6	455	c.345C>T	c.(343-345)TCC>TCT	p.S115S	KIAA0748_uc001sgl.3_5'UTR|KIAA0748_uc001sgm.3_5'UTR|KIAA0748_uc010spb.1_5'UTR|KIAA0748_uc010spc.1_5'UTR|KIAA0748_uc010spd.1_Silent_p.S115S|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	115										ovary(1)|central_nervous_system(1)	2						ACACTTACCTGGAGAAGAGTT	0.353													32	60					0	0	0.004878	0	0
OR6C75	390323	broad.mit.edu	37	12	55758919	55758919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:55758919G>A	uc010spk.1	+	1	25	c.25G>A	c.(25-27)GAC>AAC	p.D9N		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						AGCAGTAACAGACTTTATTCT	0.353													44	82					0	0	0.003610	0	0
OR6C4	341418	broad.mit.edu	37	12	55945170	55945170	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:55945170C>T	uc010spp.1	+	1	160	c.160C>T	c.(160-162)CAG>TAG	p.Q54*		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	54	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCCCCACCTCCAGACCCCCAT	0.418													45	113					0	0	0.003610	0	0
STAT2	6773	broad.mit.edu	37	12	56737284	56737284	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:56737284G>A	uc001slc.2	-	24	2523	c.2445C>T	c.(2443-2445)ATC>ATT	p.I815I	STAT2_uc001slb.2_Silent_p.I357I|STAT2_uc001sld.2_Silent_p.I811I	NM_005419	NP_005410	P52630	STAT2_HUMAN	signal transducer and activator of transcription	815					interspecies interaction between organisms|JAK-STAT cascade|regulation of transcription from RNA polymerase II promoter|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	cytosol|nucleoplasm|plasma membrane	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						CATTCGGCATGATTTCTTCAA	0.512													11	40					0	0	0.001855	0	0
LRP1	4035	broad.mit.edu	37	12	57591968	57591968	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:57591968C>T	uc001snd.2	+	59	9778	c.9312C>T	c.(9310-9312)CCC>CCT	p.P3104P		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3104	Extracellular (Potential).|LDL-receptor class B 26.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TCAGCAACCCCGATGGGCTGG	0.507													12	13					0	0	0.001855	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57871368	57871368	+	Silent	SNP	G	A	A	rs148589826		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:57871368G>A	uc001sod.2	-	7	1036	c.843C>T	c.(841-843)TGC>TGT	p.C281C	ARHGAP9_uc001sny.2_5'Flank|ARHGAP9_uc001snz.2_Silent_p.C26C|ARHGAP9_uc001soa.2_5'UTR|ARHGAP9_uc001sob.2_Silent_p.C210C|ARHGAP9_uc001soc.2_Silent_p.C210C|ARHGAP9_uc001soe.1_Silent_p.C289C|ARHGAP9_uc010sro.1_Silent_p.C210C	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	210					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			GCAGCAGGGGGCATGCAGGGC	0.642													32	50					0	0	0.002445	0	0
RASSF3	283349	broad.mit.edu	37	12	65088588	65088588	+	Silent	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:65088588T>C	uc001ssd.2	+	5	733	c.613T>C	c.(613-615)TTG>CTG	p.L205L	RASSF3_uc009zqn.2_RNA|RASSF3_uc001sse.2_Silent_p.L135L	NM_178169	NP_835463	Q86WH2	RASF3_HUMAN	Ras association (RalGDS/AF-6) domain family	205	SARAH.				signal transduction	cytoplasm|microtubule	identical protein binding				0			Lung(2;0.00133)|LUAD - Lung adenocarcinoma(6;0.0665)|LUSC - Lung squamous cell carcinoma(43;0.132)	GBM - Glioblastoma multiforme(28;0.0611)		CTTGCGCATCTTGGACAAGGA	0.478													23	46					0	0	0.003330	0	0
MSRB3	253827	broad.mit.edu	37	12	65847548	65847548	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:65847548C>T	uc001ssn.2	+	5	415	c.354C>T	c.(352-354)ATC>ATT	p.I118I	MSRB3_uc001ssm.2_Silent_p.I111I|MSRB3_uc009zqp.2_Silent_p.I111I	NM_198080	NP_932346	Q8IXL7	MSRB3_HUMAN	methionine sulfoxide reductase B3 isoform 1	118					protein repair	endoplasmic reticulum|mitochondrion	peptide-methionine-(S)-S-oxide reductase activity|protein-methionine-R-oxide reductase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.131)		CTGAGGCAATCACATTCACAG	0.468													28	75					0	0	0.002445	0	0
NUP107	57122	broad.mit.edu	37	12	69136223	69136224	+	Missense_Mutation	DNP	GG	AA	AA	rs141296706		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:69136223_69136224GG>AA	uc001suf.2	+	28	2874_2875	c.2759_2760GG>AA	c.(2758-2760)GGG>GAA	p.G920E	NUP107_uc001sug.2_Missense_Mutation_p.G679E|NUP107_uc010stj.1_Missense_Mutation_p.G891E	NM_020401	NP_065134	P57740	NU107_HUMAN	nucleoporin 107kDa	920					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			skin(1)	1	Breast(13;6.25e-06)		Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00694)			GACCCATTAGGGTATGAAATTC	0.307													20	48					0	0	0.004672	0	0
KCNMB4	27345	broad.mit.edu	37	12	70824331	70824331	+	Silent	SNP	C	T	T	rs140967177	byFrequency	TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:70824331C>T	uc001svx.2	+	3	984	c.531C>T	c.(529-531)CCC>CCT	p.P177P	uc001svy.1_5'Flank	NM_014505	NP_055320	Q86W47	KCMB4_HUMAN	calcium-activated potassium channel beta 4	177	Helical; Name=2; (Potential).				detection of calcium ion|platelet activation|regulation of action potential in neuron|regulation of neurotransmitter secretion|regulation of vasoconstriction|synaptic transmission	voltage-gated potassium channel complex	calcium-activated potassium channel activity|protein binding				0	Renal(347;0.236)		Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00243)|STAD - Stomach adenocarcinoma(21;0.0118)			TCCTCTGGCCCCTGGTGACAT	0.512													58	106					0	0	0.003610	0	0
PTPRB	5787	broad.mit.edu	37	12	70949780	70949780	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:70949780C>T	uc001swb.3	-	17	4239	c.4209G>A	c.(4207-4209)CTG>CTA	p.L1403L	PTPRB_uc010sto.1_Silent_p.L1313L|PTPRB_uc010stp.1_Silent_p.L1313L|PTPRB_uc001swc.3_Silent_p.L1621L|PTPRB_uc001swa.3_Silent_p.L1533L	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1403	Fibronectin type-III 16.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TTTCTTTCTCCAGCTTTCTGG	0.478													17	45					0	0	0.008871	0	0
PTPRB	5787	broad.mit.edu	37	12	70953405	70953405	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:70953405C>T	uc001swb.3	-	16	3809	c.3779_splice	c.e16-1	p.A1260_splice	PTPRB_uc010sto.1_Splice_Site_p.A1170_splice|PTPRB_uc010stp.1_Splice_Site_p.A1170_splice|PTPRB_uc001swc.3_Splice_Site_p.A1478_splice|PTPRB_uc001swa.3_Splice_Site_p.A1390_splice|PTPRB_uc001swd.3_Intron|PTPRB_uc009zrr.1_Intron	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B						angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GGACTTGGAGCTGAATGTAGG	0.418													8	19					0	0	0.003080	0	0
TRHDE	29953	broad.mit.edu	37	12	72969148	72969148	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:72969148C>T	uc001sxa.2	+	11	2140	c.2110C>T	c.(2110-2112)CAA>TAA	p.Q704*		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	704	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						ATTAATTGATCAATTAATCCG	0.343													20	39					0	0	0.001882	0	0
TRHDE	29953	broad.mit.edu	37	12	73012732	73012732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:73012732G>A	uc001sxa.2	+	13	2278	c.2248G>A	c.(2248-2250)GAT>AAT	p.D750N		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	750	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TGAGGAGAAGGATTTTCTTCC	0.378													20	53					0	0	0.002299	0	0
KCNC2	3747	broad.mit.edu	37	12	75445023	75445023	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:75445023G>A	uc001sxg.1	-	3	1306	c.762C>T	c.(760-762)TTC>TTT	p.F254F	KCNC2_uc009zry.2_Silent_p.F254F|KCNC2_uc001sxe.2_Silent_p.F254F|KCNC2_uc001sxf.2_Silent_p.F254F|KCNC2_uc010stw.1_Silent_p.F254F	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	254					energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						TAACAATATTGAAAGCTTCAT	0.343													12	16					0	0	0.000978	0	0
LIN7A	8825	broad.mit.edu	37	12	81205335	81205335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:81205335C>T	uc001szj.1	-	5	804	c.611G>A	c.(610-612)CGA>CAA	p.R204Q	LIN7A_uc001szk.1_RNA	NM_004664	NP_004655	O14910	LIN7A_HUMAN	lin-7 homolog A	204					exocytosis|protein complex assembly|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	L27 domain binding			ovary(1)|skin(1)	2						CCTGGCTGTTCGTAGCTTTTC	0.418													13	16					0	0	0.001368	0	0
KERA	11081	broad.mit.edu	37	12	91449866	91449866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:91449866C>T	uc001tbl.2	-	2	812	c.193G>A	c.(193-195)GAA>AAA	p.E65K		NM_007035	NP_008966	O60938	KERA_HUMAN	keratocan precursor	65	LRRNT.				response to stimulus|visual perception	proteinaceous extracellular matrix				skin(1)	1						GCAGGAATTTCTTTGAGACCT	0.388													21	43					0	0	0.001523	0	0
C12orf63	374467	broad.mit.edu	37	12	97051735	97051735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:97051735C>T	uc001tet.1	+	4	529	c.451C>T	c.(451-453)CTT>TTT	p.L151F		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	151										skin(6)|ovary(1)	7						TGGTTCTAGTCTTACCTTTGA	0.353													36	103					0	0	0.004289	0	0
C12orf63	374467	broad.mit.edu	37	12	97158896	97158896	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:97158896G>A	uc001tet.1	+	27	3534	c.3456G>A	c.(3454-3456)AAG>AAA	p.K1152K		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	1152										skin(6)|ovary(1)	7						TTATTGGAAAGAAGAATACTA	0.313													29	71					0	0	0.004289	0	0
SLC17A8	246213	broad.mit.edu	37	12	100813680	100813680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:100813680G>A	uc010svi.1	+	12	1826	c.1513G>A	c.(1513-1515)GAG>AAG	p.E505K	SLC17A8_uc009ztx.2_Missense_Mutation_p.E455K	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	505	Cytoplasmic (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						TGCTTCTGGGGAGAAACAGGA	0.473													33	68					0	0	0.003271	0	0
UTP20	27340	broad.mit.edu	37	12	101699781	101699781	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:101699781C>T	uc001tia.1	+	16	2026	c.1870C>T	c.(1870-1872)CAG>TAG	p.Q624*		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	624					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						GCCACTTTCCCAGGAGGCTTT	0.448													39	80					0	0	0.006230	0	0
STAB2	55576	broad.mit.edu	37	12	104056714	104056714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:104056714C>T	uc001tjw.2	+	18	2146	c.1960C>T	c.(1960-1962)CCT>TCT	p.P654S		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	654	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AGTTCTCATTCCTCCCTCCAT	0.438													44	76					0	0	0.003610	0	0
STAB2	55576	broad.mit.edu	37	12	104060106	104060106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:104060106G>A	uc001tjw.2	+	19	2246	c.2060G>A	c.(2059-2061)AGA>AAA	p.R687K		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	687	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TACTGGAGCAGATGTCCTGCT	0.552													25	61					0	0	0.008361	0	0
HSP90B1	7184	broad.mit.edu	37	12	104332163	104332163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:104332163G>A	uc001tkb.1	+	7	1006	c.901G>A	c.(901-903)GAA>AAA	p.E301K	HSP90B1_uc010swg.1_5'UTR|HSP90B1_uc009zui.1_Missense_Mutation_p.E301K	NM_003299	NP_003290	P14625	ENPL_HUMAN	heat shock protein 90kDa beta, member 1	301					actin rod assembly|anti-apoptosis|cellular response to ATP|ER-associated protein catabolic process|protein folding|protein transport|regulation of phosphoprotein phosphatase activity|response to hypoxia|sequestering of calcium ion	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|melanosome|microsome|midbody|perinuclear region of cytoplasm	ATP binding|calcium ion binding|low-density lipoprotein particle receptor binding|protein phosphatase binding|RNA binding|unfolded protein binding|virion binding			ovary(2)|skin(1)	3					Rifabutin(DB00615)	agcagccaaagaagagaaaga	0.204													4	13					0	0	0.000248	0	0
BTBD11	121551	broad.mit.edu	37	12	107937824	107937824	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:107937824C>T	uc001tmk.1	+	3	1919	c.1398C>T	c.(1396-1398)GCC>GCT	p.A466A	BTBD11_uc009zut.1_Silent_p.A466A|BTBD11_uc001tmj.2_Silent_p.A466A	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	466						integral to membrane	DNA binding			skin(2)|ovary(1)	3						AGCCCGAGGCCCTGTACACCC	0.577													8	32					0	0	0.004482	0	0
UBE3B	89910	broad.mit.edu	37	12	109928861	109928861	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:109928861C>T	uc001top.2	+	9	1245	c.642C>T	c.(640-642)ACC>ACT	p.T214T	UBE3B_uc001toq.2_Silent_p.T214T|UBE3B_uc001too.1_RNA|UBE3B_uc009zvj.1_Silent_p.T214T	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	214					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						TATTGTTAACCCGTGGCCTGG	0.393													20	24					0	0	0.001882	0	0
RPH3A	22895	broad.mit.edu	37	12	113334571	113334571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:113334571G>A	uc010syl.1	+	22	2433	c.2071G>A	c.(2071-2073)GTG>ATG	p.V691M	RPH3A_uc001ttz.2_Missense_Mutation_p.V691M|RPH3A_uc001tty.2_Missense_Mutation_p.V687M|RPH3A_uc010sym.1_Missense_Mutation_p.V642M|RPH3A_uc001tua.2_Missense_Mutation_p.V451M	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	691					intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		TGAGAACCACGTGTCAAGTGA	0.537													13	35					0	0	0.001368	0	0
NOS1	4842	broad.mit.edu	37	12	117728169	117728169	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:117728169G>A	uc001twm.1	-	4	1601	c.915C>T	c.(913-915)TTC>TTT	p.F305F		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	305					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TGACCTTGAGGAAGCGTGGAC	0.557													17	37					0	0	0.006122	0	0
NOS1	4842	broad.mit.edu	37	12	117768797	117768797	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:117768797C>T	uc001twm.1	-	2	764	c.78G>A	c.(76-78)GGG>GGA	p.G26G		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	26	Interaction with NOSIP (By similarity).|PDZ.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	ATCCCAGGCCCCCAACTTTGC	0.567													21	59					0	0	0.001882	0	0
CCDC60	160777	broad.mit.edu	37	12	119866561	119866561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:119866561G>A	uc001txe.2	+	2	629	c.164G>A	c.(163-165)CGA>CAA	p.R55Q	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	55										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GACCTTATACGAAGCCGGTGA	0.478													7	19					0	0	0.001984	0	0
CCDC60	160777	broad.mit.edu	37	12	119909856	119909856	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:119909856G>A	uc001txe.2	+	3	693	c.228G>A	c.(226-228)GAG>GAA	p.E76E	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	76	Potential.									ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		TGAGGGAAGAGACTGCAAAGA	0.453													40	79					0	0	0.002522	0	0
CCDC60	160777	broad.mit.edu	37	12	119957997	119957998	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:119957997_119957998GG>AA	uc001txe.2	+	9	1505	c.1040_splice	c.e9+1	p.S347_splice	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60											ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		CTCAAATCAAGGTAGGAAAGCC	0.505													43	92					0	0	0.004672	0	0
CIT	11113	broad.mit.edu	37	12	120306862	120306862	+	Splice_Site	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:120306862A>C	uc001txi.1	-	3	291	c.238_splice	c.e3+1	p.Y80_splice	CIT_uc001txj.1_Splice_Site_p.Y80_splice	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron						intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		CCCCAAACTTACACTTCCGGA	0.393													39	89					0	0	0.006230	0	0
OASL	8638	broad.mit.edu	37	12	121469308	121469308	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:121469308G>A	uc001tzj.1	-	3	600	c.594C>T	c.(592-594)TTC>TTT	p.F198F	OASL_uc001tzk.1_Silent_p.F198F	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	198					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GATGTTTCACGAAATTTCTCT	0.587													127	261					0	0	0.003610	0	0
KDM2B	84678	broad.mit.edu	37	12	121878938	121878938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:121878938G>A	uc001uat.2	-	20	3487	c.3383C>T	c.(3382-3384)TCC>TTC	p.S1128F	KDM2B_uc001uaq.2_Missense_Mutation_p.S568F|KDM2B_uc010szy.1_Missense_Mutation_p.S568F|KDM2B_uc001uar.2_Missense_Mutation_p.S719F|KDM2B_uc001uas.2_Missense_Mutation_p.S1059F|KDM2B_uc001uau.2_Intron|KDM2B_uc001uao.2_Missense_Mutation_p.S376F|KDM2B_uc010szx.1_Missense_Mutation_p.S376F|KDM2B_uc001uap.2_RNA	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	1128					embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						GAGGTCGAGGGAGACGGGCTG	0.607													15	23					0	0	0.004007	0	0
PITPNM2	57605	broad.mit.edu	37	12	123519106	123519106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:123519106G>A	uc001uej.1	-	2	171	c.32C>T	c.(31-33)CCA>CTA	p.P11L	PITPNM2_uc001uek.1_Missense_Mutation_p.P11L|PITPNM2_uc009zxu.1_Missense_Mutation_p.P11L	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	11					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		CACGGTCATTGGCAGAGGAAT	0.552													34	76					0	0	0.005524	0	0
DNAH10	196385	broad.mit.edu	37	12	124350589	124350589	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:124350589G>A	uc001uft.3	+	40	6807	c.6782G>A	c.(6781-6783)TGG>TAG	p.W2261*		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2261	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CGACCATACTGGAAAAAATGG	0.279													18	30					0	0	0.004990	0	0
NCOR2	9612	broad.mit.edu	37	12	124979719	124979720	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:124979719_124979720GG>TA	uc010tba.1	-	1	195_196	c.78_79CC>TA	c.(76-81)TACCCA>TATACA	p.P27T	NCOR2_uc010tay.1_Missense_Mutation_p.P27T|NCOR2_uc010taz.1_Missense_Mutation_p.P27T|NCOR2_uc010tbb.1_Missense_Mutation_p.P27T|NCOR2_uc010tbc.1_Missense_Mutation_p.P27T|NCOR2_uc001ugj.1_Missense_Mutation_p.P27T|NCOR2_uc001ugk.1_Missense_Mutation_p.P27T	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	27					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		ATCTGCACTGGGTAGGAAAGGC	0.649													17	28					0	0	0.004672	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834401	125834401	+	Silent	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:125834401T>G	uc001uhe.1	+	2	464	c.456T>G	c.(454-456)CTT>CTG	p.L152L		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	152	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		ACAGTGACCTTACGGAAGATC	0.542													41	103					0	0	0.002222	0	0
TMEM132D	121256	broad.mit.edu	37	12	129559291	129559291	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:129559291C>T	uc009zyl.1	-	9	2757	c.2429G>A	c.(2428-2430)AGA>AAA	p.R810K	TMEM132D_uc001uia.2_Missense_Mutation_p.R348K	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	810	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CCCTGTGTGTCTGCTGTCACT	0.498													46	77					0	0	0.003610	0	0
RIMBP2	23504	broad.mit.edu	37	12	130898837	130898837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:130898837C>T	uc001uil.2	-	14	2649	c.2485G>A	c.(2485-2487)GAC>AAC	p.D829N		NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	829						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		GAAAGGCGGTCTCGCCCGTAA	0.567													36	72					0	0	0.003610	0	0
EP400	57634	broad.mit.edu	37	12	132522320	132522320	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:132522320C>T	uc001ujn.2	+	30	6080	c.6045C>T	c.(6043-6045)TCC>TCT	p.S2015S	EP400_uc001ujl.2_Silent_p.S2014S|EP400_uc001ujm.2_Silent_p.S1934S	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2051	Helicase C-terminal.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		ATGACTACTCCATGGCTTTCT	0.473													8	36					0	0	0.003080	0	0
NOC4L	79050	broad.mit.edu	37	12	132636693	132636693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr12:132636693C>T	uc001ujz.1	+	14	1423	c.1382C>T	c.(1381-1383)TCC>TTC	p.S461F		NM_024078	NP_076983	Q9BVI4	NOC4L_HUMAN	nucleolar complex associated 4 homolog	461					rRNA processing	integral to membrane|nuclear membrane|nucleolus	protein binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.2e-08)|Epithelial(86;3.34e-07)|all cancers(50;1.97e-05)		CAGGCCCTGTCCATGCCTGAG	0.682													11	18					0	0	0.002450	0	0
LOC284232	284232	broad.mit.edu	37	13	19412884	19412884	+	RNA	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:19412884T>C	uc010tcj.1	-	1		c.33226A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GCAATATCTGTCTTCAAAATG	0.269													4	70					0	0	0.000602	0	0
LOC284232	284232	broad.mit.edu	37	13	19413025	19413025	+	RNA	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:19413025A>G	uc010tcj.1	-	1		c.33085T>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AATAACCTGCACATCCATGCA	0.299													3	15					0	0	0.000248	0	0
GJB6	10804	broad.mit.edu	37	13	20797125	20797125	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:20797125C>T	uc001umz.3	-	3	1048	c.495G>A	c.(493-495)TGG>TGA	p.W165*	GJB6_uc001unc.3_Nonsense_Mutation_p.W165*|GJB6_uc001una.3_Nonsense_Mutation_p.W165*|GJB6_uc001und.3_Nonsense_Mutation_p.W165*|GJB6_uc001unb.3_Nonsense_Mutation_p.W165*	NM_006783	NP_006774	O95452	CXB6_HUMAN	gap junction protein, beta 6	165	Extracellular (Potential).				cell communication|sensory perception of sound	connexon complex|integral to membrane|intracellular membrane-bounded organelle				ovary(1)	1		all_cancers(29;2.04e-22)|all_epithelial(30;1.19e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;2.17e-05)|Epithelial(112;0.00075)|OV - Ovarian serous cystadenocarcinoma(117;0.00978)|Lung(94;0.0238)|GBM - Glioblastoma multiforme(144;0.0323)|LUSC - Lung squamous cell carcinoma(192;0.0744)		ATTTCAACACCCAGGGCAGGT	0.448													12	16					0	0	0.001855	0	0
FGF9	2254	broad.mit.edu	37	13	22275367	22275367	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:22275367C>T	uc001uog.2	+	3	1257	c.420C>T	c.(418-420)TTC>TTT	p.F140F		NM_002010	NP_002001	P31371	FGF9_HUMAN	fibroblast growth factor 9 precursor	140					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|male gonad development|positive regulation of cell division	extracellular space	growth factor activity|heparin binding				0		all_cancers(29;1.23e-20)|all_epithelial(30;9.83e-19)|all_lung(29;9.64e-17)|Lung SC(185;0.0262)|Breast(139;0.106)		all cancers(112;3.92e-05)|Epithelial(112;0.000166)|OV - Ovarian serous cystadenocarcinoma(117;0.00314)|Lung(94;0.163)		GAGAACAGTTCGAAGAAAACT	0.294													14	4					0	0	0.004007	0	0
SACS	26278	broad.mit.edu	37	13	23914341	23914341	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:23914341A>G	uc001uon.2	-	10	4263	c.3674T>C	c.(3673-3675)TTA>TCA	p.L1225S	SACS_uc001uoo.2_Missense_Mutation_p.L1078S|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	1225					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		aaagtgttttaagacagcact	0.209													6	7					0	0	0.001168	0	0
RNF17	56163	broad.mit.edu	37	13	25349023	25349023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:25349023G>A	uc001upr.2	+	3	339	c.298G>A	c.(298-300)GAA>AAA	p.E100K	RNF17_uc010tdd.1_Intron|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E100K|RNF17_uc001ups.2_Missense_Mutation_p.E39K|RNF17_uc001upq.1_Missense_Mutation_p.E100K	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	100					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		CTCCATAATGGAAAAACTGCA	0.323													9	17					0	0	0.008291	0	0
GPR12	2835	broad.mit.edu	37	13	27333041	27333041	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:27333041G>A	uc010aal.2	-	2	1146	c.924C>T	c.(922-924)ATC>ATT	p.I308I	GPR12_uc010tdl.1_Silent_p.I149I	NM_005288	NP_005279	P47775	GPR12_HUMAN	G protein-coupled receptor 12	308	Cytoplasmic (Potential).					integral to plasma membrane					0	Colorectal(5;5.77e-05)	Breast(139;0.198)		Epithelial(112;9.37e-07)|OV - Ovarian serous cystadenocarcinoma(117;1.16e-06)|all cancers(112;8.31e-06)|GBM - Glioblastoma multiforme(144;0.00121)|Lung(94;0.111)|LUSC - Lung squamous cell carcinoma(192;0.184)		GCGCTTTCTGGATCTCTTGGT	0.557													37	21					0	0	0.005524	0	0
PDX1	3651	broad.mit.edu	37	13	28498646	28498646	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:28498646C>T	uc001urt.2	+	2	768	c.660C>T	c.(658-660)GTC>GTT	p.V220V		NM_000209	NP_000200	P52945	PDX1_HUMAN	pancreatic and duodenal homeobox 1	220					detection of glucose|generation of precursor metabolites and energy|insulin secretion|nitric oxide mediated signal transduction|organ morphogenesis|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|type B pancreatic cell differentiation	nucleus	sequence-specific DNA binding transcription factor activity				0	all_cancers(110;0.175)|all_hematologic(3;0.0447)|Acute lymphoblastic leukemia(6;0.155)	Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	GBM - Glioblastoma multiforme(144;0.0402)|all cancers(112;0.0404)|OV - Ovarian serous cystadenocarcinoma(117;0.197)		GTGGCGGGGTCGCGGAGCCTG	0.597													77	58					0	0	0.003610	0	0
PAN3	255967	broad.mit.edu	37	13	28840996	28840996	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:28840996G>A	uc001urz.2	+	9	1126	c.1118G>A	c.(1117-1119)TGC>TAC	p.C373Y	PAN3_uc010tdo.1_Missense_Mutation_p.C519Y|PAN3_uc001ury.2_Missense_Mutation_p.C207Y|PAN3_uc001urx.2_Missense_Mutation_p.C319Y	NM_175854	NP_787050	Q58A45	PAN3_HUMAN	PABP1-dependent poly A-specific ribonuclease	519	Protein kinase.|Interaction with PAN2.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening	centrosome|cytosol	ATP binding|protein kinase activity			ovary(1)	1	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)	Colorectal(13;0.000334)	all cancers(112;0.0102)|Epithelial(112;0.0803)|GBM - Glioblastoma multiforme(144;0.121)|OV - Ovarian serous cystadenocarcinoma(117;0.13)|Lung(94;0.174)		CTGCCATATTGCCTTCGGAGG	0.343													26	26					0	0	0.003954	0	0
FLT1	2321	broad.mit.edu	37	13	29001438	29001438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:29001438C>T	uc001usb.3	-	10	1579	c.1294G>A	c.(1294-1296)GAA>AAA	p.E432K	FLT1_uc010aar.1_Missense_Mutation_p.E432K|FLT1_uc001usc.3_Missense_Mutation_p.E432K|FLT1_uc010tdp.1_Missense_Mutation_p.E432K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	432	Ig-like C2-type 5.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	ACGGCCTTTTCGTAAATCTGG	0.493													12	12					0	0	0.001368	0	0
FREM2	341640	broad.mit.edu	37	13	39262895	39262895	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:39262895G>A	uc001uwv.2	+	1	1723	c.1414G>A	c.(1414-1416)GAT>AAT	p.D472N		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	472	Extracellular (Potential).|CSPG 2.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GGTCATCAGCGATGAGGATGA	0.592													20	23					0	0	0.001882	0	0
STOML3	161003	broad.mit.edu	37	13	39550716	39550716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:39550716G>A	uc001uwx.2	-	3	328	c.190C>T	c.(190-192)CGT>TGT	p.R64C	STOML3_uc010tez.1_Missense_Mutation_p.R55C	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	64	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		CGTCCCAGACGGAATACAACA	0.473													17	21					0	0	0.008871	0	0
SIAH3	283514	broad.mit.edu	37	13	46357845	46357845	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:46357845G>A	uc001vap.2	-	2	565	c.483C>T	c.(481-483)TCC>TCT	p.S161S		NM_198849	NP_942146	Q8IW03	SIAH3_HUMAN	seven in absentia homolog 3	161					multicellular organismal development|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding			ovary(1)|skin(1)	2						GGCCAAGGCAGGAGTGCATGA	0.597													11	13					0	0	0.008291	0	0
THSD1	55901	broad.mit.edu	37	13	52952660	52952660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:52952660C>T	uc001vgo.2	-	5	1990	c.1445G>A	c.(1444-1446)GGA>GAA	p.G482E	THSD1_uc001vgp.2_Missense_Mutation_p.G429E|THSD1_uc010tgz.1_Missense_Mutation_p.G103E|THSD1_uc010aea.2_5'UTR	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	482	Cytoplasmic (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		GGGCCCGTCTCCCCCATCCGA	0.657													18	28					0	0	0.008871	0	0
DIAPH3	81624	broad.mit.edu	37	13	60453532	60453532	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:60453532A>C	uc001vht.2	-	21	2657	c.2438T>G	c.(2437-2439)GTG>GGG	p.V813G	DIAPH3_uc001vhu.2_Missense_Mutation_p.V550G|DIAPH3_uc001vhv.2_Missense_Mutation_p.V391G	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	813	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		GATGTTGTTCACCTGCTCTTC	0.423													16	19					0	0	0.003163	0	0
MYCBP2	23077	broad.mit.edu	37	13	77655574	77655574	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:77655574G>A	uc001vkf.2	-	66	11383	c.11292C>T	c.(11290-11292)TCC>TCT	p.S3764S	MYCBP2_uc010aev.2_Silent_p.S3168S|MYCBP2_uc001vke.2_Silent_p.S384S	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3764	DOC.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		CAAGATCTCGGGAATTGTCCA	0.393													46	45					0	0	0.003610	0	0
SLITRK1	114798	broad.mit.edu	37	13	84455470	84455470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:84455470G>A	uc001vlk.2	-	1	1059	c.173C>T	c.(172-174)TCC>TTC	p.S58F		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	58	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GTAAAACTGGGAAGTCGGGGC	0.433													24	30					0	0	0.006320	0	0
COL4A1	1282	broad.mit.edu	37	13	110845251	110845251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:110845251C>T	uc001vqw.3	-	23	1513	c.1391G>A	c.(1390-1392)GGA>GAA	p.G464E	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	464	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			GCAACTCTCTCCTTTTTGACC	0.498													22	25					0	0	0.003330	0	0
RASA3	22821	broad.mit.edu	37	13	114751155	114751155	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr13:114751155A>G	uc001vui.2	-	23	2491	c.2360T>C	c.(2359-2361)GTT>GCT	p.V787A	RASA3_uc010tkk.1_Missense_Mutation_p.V755A|RASA3_uc001vuj.2_Missense_Mutation_p.V404A	NM_007368	NP_031394	Q14644	RASA3_HUMAN	RAS p21 protein activator 3	787					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	calcium-release channel activity|metal ion binding|Ras GTPase activator activity			lung(3)|skin(1)	4	Lung NSC(43;0.00814)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.016)|all_epithelial(44;0.00577)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.188)	BRCA - Breast invasive adenocarcinoma(86;0.128)			CAAAGCCCCAACCCCAGCGAT	0.557													63	47					0	0	0.003610	0	0
OR4N2	390429	broad.mit.edu	37	14	20295729	20295729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:20295729G>A	uc010tkv.1	+	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATCCTCCCTGGAAATTTTCTC	0.448													70	264					0	0	0.003610	0	0
OR4K2	390431	broad.mit.edu	37	14	20344634	20344634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:20344634G>A	uc001vwh.1	+	1	208	c.208G>A	c.(208-210)GAT>AAT	p.D70N		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTCAATCATTGATATGTCTCT	0.423													47	203					0	0	0.003610	0	0
OR4K1	79544	broad.mit.edu	37	14	20404572	20404572	+	Silent	SNP	T	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:20404572T>A	uc001vwj.1	+	1	747	c.747T>A	c.(745-747)CTT>CTA	p.L249L		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TGGTCATTCTTTTCTTCGGGC	0.428													25	92					0	0	0.003954	0	0
OR4K14	122740	broad.mit.edu	37	14	20482649	20482649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:20482649G>A	uc010tky.1	-	1	704	c.704C>T	c.(703-705)TCC>TTC	p.S235F		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GAGTGCTTTGGATGTGCTACC	0.507													13	15					0	0	0.001368	0	0
OR4K13	390433	broad.mit.edu	37	14	20502084	20502084	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:20502084G>A	uc010tkz.1	-	1	834	c.834C>T	c.(832-834)TTC>TTT	p.F278F		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	278	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		AGAGAGGTGTGAAAATTGTGT	0.333													8	27					0	0	0.004482	0	0
RNASE9	390443	broad.mit.edu	37	14	21024965	21024965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:21024965C>T	uc010aho.2	-	4	423	c.264G>A	c.(262-264)ATG>ATA	p.M88I	RNASE9_uc001vxq.3_Missense_Mutation_p.M93I|RNASE9_uc010ahp.2_Missense_Mutation_p.M93I|RNASE9_uc010ahq.2_Missense_Mutation_p.M93I|RNASE9_uc010ahr.2_Missense_Mutation_p.M93I|RNASE9_uc010ahs.2_Missense_Mutation_p.M88I|RNASE9_uc010aht.2_Missense_Mutation_p.M88I|RNASE9_uc010ahu.2_Missense_Mutation_p.M88I	NM_001110357	NP_001103827	P60153	RNAS9_HUMAN	ribonuclease, RNase A family, 9 (non-active)	88						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(2)	2	all_cancers(95;0.00238)		Epithelial(56;3.32e-06)|all cancers(55;2.46e-05)	GBM - Glioblastoma multiforme(265;0.0141)		CATTTTTTCCCATGATTTCAT	0.403													42	90					0	0	0.003610	0	0
SLC39A2	29986	broad.mit.edu	37	14	21469223	21469223	+	Missense_Mutation	SNP	G	A	A	rs144375696	byFrequency	TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:21469223G>A	uc001vyr.2	+	4	602	c.415G>A	c.(415-417)GAA>AAA	p.E139K	SLC39A2_uc001vys.2_Missense_Mutation_p.E40K	NM_014579	NP_055394	Q9NP94	S39A2_HUMAN	solute carrier family 39 (zinc transporter),	139	Cytoplasmic (Potential).					cytoplasmic membrane-bounded vesicle|integral to plasma membrane	zinc ion transmembrane transporter activity			ovary(2)|central_nervous_system(1)	3	all_cancers(95;0.00267)		OV - Ovarian serous cystadenocarcinoma(11;1.34e-10)|Epithelial(56;1.57e-08)|all cancers(55;7.45e-08)	GBM - Glioblastoma multiforme(265;0.0187)		AGTGCAGGACGAAGAATGGGG	0.547													42	108					0	0	0.002222	0	0
FLJ10357	55701	broad.mit.edu	37	14	21553046	21553046	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:21553046G>A	uc001vzp.2	+	18	3953	c.3924G>A	c.(3922-3924)GGG>GGA	p.G1308G	FLJ10357_uc001vzo.1_Silent_p.G387G|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_Silent_p.G594G	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	1308	PH.				regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		GCCCTGAAGGGGGGTCAGAGA	0.512													37	105					0	0	0.002222	0	0
OR5AU1	390445	broad.mit.edu	37	14	21624050	21624050	+	Silent	SNP	G	A	A	rs143241393		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:21624050G>A	uc010tlp.1	-	1	135	c.135C>T	c.(133-135)ATC>ATT	p.I45I		NM_001004731	NP_001004731	Q8NGC0	O5AU1_HUMAN	olfactory receptor, family 5, subfamily AU,	45	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(95;0.00238)		Epithelial(56;6.88e-07)|all cancers(55;6.02e-06)	GBM - Glioblastoma multiforme(265;0.0192)		AGTGCTCTGCGATGGAGAAAG	0.527													41	66					0	0	0.008740	0	0
OR4E2	26686	broad.mit.edu	37	14	22133482	22133482	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:22133482C>T	uc010tmd.1	+	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		TGTATTTCTTCCTGAGCAATC	0.423													92	223					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	14	22994658	22994658	+	Silent	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:22994658A>C	uc001wbw.2	+	3	388	c.379A>C	c.(379-381)AGA>CGA	p.R127R	uc010aja.1_Intron|uc010tmk.1_Intron|uc001wco.2_Intron|uc010aje.1_Intron|uc001wcp.2_Intron|uc001wcr.1_Intron|uc001wcs.1_Intron|uc010ajf.1_Intron|uc001wcx.3_Intron|uc001wde.1_Intron|uc001wdf.2_Intron|uc010ajk.1_Intron|uc001wdg.1_Intron|uc010ajl.1_Intron|uc010ajo.1_Intron|uc010ajp.1_Intron|uc001wdv.3_Intron|uc001wec.2_Intron|uc001wee.3_Intron|uc010tmt.1_Intron|uc010ajv.1_Intron|uc001weg.2_Intron|uc001wei.2_Intron|uc001wej.2_Intron|uc001wek.2_Intron|uc001wel.2_Intron|uc001wem.3_Intron|uc001wen.1_Intron|uc001weo.2_Intron|uc001wep.2_Intron|uc001weq.2_Intron|uc001wer.2_Intron|uc001wet.2_Intron|uc001weu.2_Intron|uc001wev.2_Intron|uc001wew.2_Intron|uc010tmv.1_Intron|uc001wez.2_Intron|uc010ajx.1_Intron|uc001wfb.1_Intron|uc001wfd.1_Intron|uc001wfe.2_Intron|uc001wfg.2_Intron|uc001wfh.1_Intron|uc001wfi.2_Intron|uc001wfk.2_Intron|uc001wfl.2_Intron|uc010ajy.1_Intron|uc001wfn.2_Intron|uc001wfp.2_Intron|uc001wfq.1_Intron|uc001wfr.1_Intron|uc010ajz.1_Intron|uc001wfs.1_Intron|uc001wft.1_Intron|uc001wfu.2_Intron|uc001wfv.1_Intron|uc001wfw.1_5'UTR|uc001wfx.2_5'Flank|uc001wfy.1_5'Flank					SubName: Full=Alpha-chain C region; Flags: Fragment;																		ATACTTTGGAAGAGGAACTCA	0.488													24	78					0	0	0.005443	0	0
ABHD4	63874	broad.mit.edu	37	14	23072519	23072519	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:23072519T>C	uc001wgm.2	+	3	406	c.337T>C	c.(337-339)TTC>CTC	p.F113L	ABHD4_uc010tmz.1_Missense_Mutation_p.F113L|ABHD4_uc010tna.1_Missense_Mutation_p.F113L|ABHD4_uc010tnb.1_RNA	NM_022060	NP_071343	Q8TB40	ABHD4_HUMAN	abhydrolase domain containing 4	113					lipid catabolic process		hydrolase activity			central_nervous_system(1)	1	all_cancers(95;5.49e-05)			GBM - Glioblastoma multiforme(265;0.0153)		AAGGCCAGCATTCCCAAGGGA	0.612													17	34					0	0	0.006122	0	0
HOMEZ	57594	broad.mit.edu	37	14	23745814	23745814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:23745814G>A	uc001wja.2	-	2	771	c.623C>T	c.(622-624)CCT>CTT	p.P208L	HOMEZ_uc001wjb.2_Missense_Mutation_p.P210L	NM_020834	NP_065885	Q8IX15	HOMEZ_HUMAN	homeodomain leucine zipper protein	208						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(95;5.54e-06)			GBM - Glioblastoma multiforme(265;0.00643)		TCCACTGCCAGGTGTCATCAG	0.532													31	80					0	0	0.008361	0	0
SLC22A17	51310	broad.mit.edu	37	14	23817423	23817423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:23817423C>T	uc001wjl.2	-	5	841	c.785G>A	c.(784-786)CGA>CAA	p.R262Q	SLC22A17_uc010akk.2_Missense_Mutation_p.R44Q|SLC22A17_uc001wjn.2_RNA|SLC22A17_uc001wjm.2_Missense_Mutation_p.R262Q	NM_020372	NP_065105	Q8WUG5	S22AH_HUMAN	solute carrier family 22, member 17 isoform a	262					siderophore transport	integral to organelle membrane|integral to plasma membrane|vacuolar membrane	transmembrane receptor activity|transmembrane transporter activity				0	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00643)		GGGCCGGTTTCGCTCAGCCAG	0.622													38	67					0	0	0.006230	0	0
MYH7	4625	broad.mit.edu	37	14	23902789	23902789	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:23902789G>A	uc001wjx.2	-	3	259	c.153C>T	c.(151-153)ATC>ATT	p.I51I		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	51	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CTCGAGACACGATCTTGGCCT	0.557													54	104					0	0	0.003610	0	0
PCK2	5106	broad.mit.edu	37	14	24569335	24569335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:24569335G>A	uc001wlt.2	+	7	1279	c.1147G>A	c.(1147-1149)GAT>AAT	p.D383N	NRL_uc001wlq.2_Intron|PCK2_uc001wlr.1_Missense_Mutation_p.D395N|PCK2_uc001wls.2_Missense_Mutation_p.D383N|PCK2_uc010tnw.1_Missense_Mutation_p.D249N|PCK2_uc010ald.2_3'UTR|PCK2_uc010ale.2_3'UTR|PCK2_uc010tnx.1_Missense_Mutation_p.D249N|PCK2_uc001wlu.3_Missense_Mutation_p.D249N	NM_004563	NP_004554	Q16822	PCKGM_HUMAN	mitochondrial phosphoenolpyruvate carboxykinase	383					gluconeogenesis	mitochondrial matrix	GTP binding|metal ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			ovary(1)	1				GBM - Glioblastoma multiforme(265;0.0184)		TGAGACCAGTGATGGTGGCGT	0.552													21	38					0	0	0.002299	0	0
DCAF11	80344	broad.mit.edu	37	14	24588358	24588358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:24588358G>A	uc001wlv.2	+	9	1064	c.784G>A	c.(784-786)GAT>AAT	p.D262N	DCAF11_uc001wlw.2_Missense_Mutation_p.D262N|DCAF11_uc001wlz.2_Missense_Mutation_p.D162N|DCAF11_uc001wly.2_Missense_Mutation_p.D218N|DCAF11_uc001wme.2_Missense_Mutation_p.D222N|DCAF11_uc010tny.1_Missense_Mutation_p.D129N|DCAF11_uc001wmd.2_Missense_Mutation_p.D262N|DCAF11_uc001wmc.2_Missense_Mutation_p.D162N|DCAF11_uc001wmb.3_Missense_Mutation_p.D236N|DCAF11_uc001wma.3_Missense_Mutation_p.D262N	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	262						CUL4 RING ubiquitin ligase complex	protein binding				0						TTTTAGGCCAGATGAGCGTCG	0.468													46	121					0	0	0.003610	0	0
G2E3	55632	broad.mit.edu	37	14	31085542	31085542	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:31085542C>T	uc001wqk.2	+	15	2077	c.1923C>T	c.(1921-1923)TCC>TCT	p.S641S	G2E3_uc010tpf.1_Silent_p.S595S|G2E3_uc001wql.1_Silent_p.S153S	NM_017769	NP_060239	Q7L622	G2E3_HUMAN	G2/M-phase specific E3 ubiquitin ligase	641	HECT.				apoptosis|multicellular organismal development|protein modification process	Golgi apparatus|nucleolus	acid-amino acid ligase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						GTTGCAGTTCCATTCCTCCAG	0.348													7	41					0	0	0.001984	0	0
HECTD1	25831	broad.mit.edu	37	14	31637529	31637529	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:31637529G>A	uc001wrc.1	-	10	2086	c.1597C>T	c.(1597-1599)CAG>TAG	p.Q533*	HECTD1_uc001wrd.1_Nonsense_Mutation_p.Q48*	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	533					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		ATAGTTTGCTGAAATGTTTGT	0.348													63	147					0	0	0.003610	0	0
ARHGAP5	394	broad.mit.edu	37	14	32615491	32615492	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:32615491_32615492CC>TT	uc001wrl.2	+	4	4127_4128	c.3888_3889CC>TT	c.(3886-3891)TACCGT>TATTGT	p.R1297C	ARHGAP5_uc001wrm.2_Missense_Mutation_p.R1296C|ARHGAP5_uc001wrn.2_Missense_Mutation_p.R1297C|ARHGAP5_uc001wro.2_Missense_Mutation_p.R36C|ARHGAP5_uc001wrp.2_Missense_Mutation_p.R32C	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	1297	Rho-GAP.				cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		AAGGACTCTACCGTGTCAGCGG	0.277													13	30					0	0	0.004672	0	0
RALGAPA1	253959	broad.mit.edu	37	14	36226075	36226076	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:36226075_36226076GG>AA	uc001wti.2	-	7	977_978	c.586_587CC>TT	c.(586-588)CCA>TTA	p.P196L	RALGAPA1_uc001wtj.2_Missense_Mutation_p.P196L|RALGAPA1_uc010tpv.1_Missense_Mutation_p.P196L|RALGAPA1_uc010tpw.1_Missense_Mutation_p.P196L|RALGAPA1_uc001wtk.1_Missense_Mutation_p.P47L	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	196					activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						TCCTGATTGTGGGGGGACAAGA	0.317													24	65					0	0	0.004672	0	0
PYGL	5836	broad.mit.edu	37	14	51382199	51382199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:51382199G>A	uc001wyu.2	-	11	1385	c.1258C>T	c.(1258-1260)CCT>TCT	p.P420S	PYGL_uc010tqq.1_Missense_Mutation_p.P386S|PYGL_uc001wyv.2_Missense_Mutation_p.P94S	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	420					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	ACATCTTTAGGAAACAAGGCC	0.458													23	44					0	0	0.002780	0	0
GNG2	54331	broad.mit.edu	37	14	52433367	52433367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:52433367C>T	uc001wzi.2	+	4	707	c.178C>T	c.(178-180)CCG>TCG	p.P60S	GNG2_uc001wzh.2_RNA|GNG2_uc010aoc.1_RNA|GNG2_uc001wzj.2_RNA|GNG2_uc001wzk.2_Missense_Mutation_p.P60S	NM_053064	NP_444292	P59768	GBG2_HUMAN	guanine nucleotide binding protein (G protein),	60					cellular response to glucagon stimulus|energy reserve metabolic process|platelet activation|synaptic transmission	heterotrimeric G-protein complex	protein binding|signal transducer activity				0	all_epithelial(31;0.0659)|Breast(41;0.0684)				Halothane(DB01159)	TTCAGAAAACCCGTTTAGGGA	0.522													37	88					0	0	0.007835	0	0
SAMD4A	23034	broad.mit.edu	37	14	55236922	55236922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:55236922G>A	uc001xbb.2	+	8	1695	c.1694G>A	c.(1693-1695)GGA>GAA	p.G565E	SAMD4A_uc001xbc.2_Missense_Mutation_p.G477E|SAMD4A_uc001xbg.2_Missense_Mutation_p.G157E	NM_015589	NP_056404	Q9UPU9	SMAG1_HUMAN	sterile alpha motif domain containing 4 isoform	566					positive regulation of translation	cell junction|cytoplasm|dendrite|synapse|synaptosome	translation repressor activity				0						GACATATCAGGATATCGACAG	0.458													50	106					0	0	0.003610	0	0
SIX4	51804	broad.mit.edu	37	14	61180583	61180583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:61180583G>A	uc001xfc.2	-	3	1888	c.1888C>T	c.(1888-1890)CCC>TCC	p.P630S		NM_017420	NP_059116	Q9UIU6	SIX4_HUMAN	sine oculis homeobox homolog 4	630						nucleus				breast(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0275)		AGCTCAGTGGGATTTAGTAGT	0.473													13	14					0	0	0.001855	0	0
SIX4	51804	broad.mit.edu	37	14	61190726	61190726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:61190726C>T	uc001xfc.2	-	1	67	c.67G>A	c.(67-69)GAA>AAA	p.E23K	SIX4_uc010app.1_Missense_Mutation_p.E15K	NM_017420	NP_059116	Q9UIU6	SIX4_HUMAN	sine oculis homeobox homolog 4	23			E -> Q (in a breast cancer sample; somatic mutation).			nucleus		p.E23Q(1)		breast(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0275)		GAGGCGCTTTCCATCCCATTC	0.582													56	103					0	0	0.003610	0	0
KCNH5	27133	broad.mit.edu	37	14	63174486	63174486	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:63174486C>T	uc001xfx.2	-	11	2758	c.2707G>A	c.(2707-2709)GAG>AAG	p.E903K	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	903	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		AAGGCCTGCTCGGGGATGGGA	0.547													52	91					0	0	0.003610	0	0
C14orf50	145376	broad.mit.edu	37	14	65031494	65031494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:65031494G>A	uc001xhl.1	+	4	304	c.208G>A	c.(208-210)GAA>AAA	p.E70K		NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376	70										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		AGAAGTCAAGGAAAAAGGAAA	0.403													88	138					0	0	0.003610	0	0
FNTB	2342	broad.mit.edu	37	14	65494184	65494184	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:65494184C>T	uc001xia.2	+	5	553	c.388C>T	c.(388-390)CTG>TTG	p.L130L	FNTB_uc010tsl.1_Silent_p.L164L|FNTB_uc010tsm.1_Silent_p.L84L|MAX_uc001xic.1_Intron|FNTB_uc001xid.2_5'UTR|FNTB_uc010tso.1_Silent_p.L45L	NM_002028	NP_002019	P49356	FNTB_HUMAN	farnesyltransferase, CAAX box, beta	130	PFTB 1.				protein farnesylation	microtubule associated complex	protein binding|protein farnesyltransferase activity			ovary(1)	1				all cancers(60;0.00115)|OV - Ovarian serous cystadenocarcinoma(108;0.00412)|BRCA - Breast invasive adenocarcinoma(234;0.011)		GTGTCAGTTCCTGGAGCTGTG	0.493													64	129					0	0	0.003610	0	0
DCAF5	8816	broad.mit.edu	37	14	69521511	69521511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:69521511G>A	uc001xkp.2	-	9	2111	c.1892C>T	c.(1891-1893)TCG>TTG	p.S631L	DCAF5_uc001xkq.2_Missense_Mutation_p.S630L	NM_003861	NP_003852	Q96JK2	DCAF5_HUMAN	WD repeat domain 22	631						CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)	2						CTCAGGGGACGAGGTTGGGGA	0.493													40	73					0	0	0.008740	0	0
SLC10A1	6554	broad.mit.edu	37	14	70252859	70252859	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:70252859G>A	uc001xlr.2	-	2	656	c.522C>T	c.(520-522)ATC>ATT	p.I174I		NM_003049	NP_003040	Q14973	NTCP_HUMAN	solute carrier family 10, member 1	174	Helical; (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(1)	1				all cancers(60;0.00228)|BRCA - Breast invasive adenocarcinoma(234;0.0137)|OV - Ovarian serous cystadenocarcinoma(108;0.0226)		ATTTGAGGACGATCCCTATGG	0.473													47	74					0	0	0.003610	0	0
MAP3K9	4293	broad.mit.edu	37	14	71209195	71209195	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:71209195C>T	uc001xmm.2	-	6	1440	c.1440G>A	c.(1438-1440)CTG>CTA	p.L480L	MAP3K9_uc010ttk.1_Silent_p.L217L|MAP3K9_uc001xmk.2_Silent_p.L174L|MAP3K9_uc001xml.2_Silent_p.L480L	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	480	Leucine-zipper 2.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		GCTCCCGTTCCAGGATGTCAA	0.622													12	36					0	0	0.001368	0	0
RGS6	9628	broad.mit.edu	37	14	72936762	72936762	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:72936762C>T	uc001xna.3	+	8	1030	c.507C>T	c.(505-507)TTC>TTT	p.F169F	RGS6_uc010ttn.1_Silent_p.F169F|RGS6_uc001xmx.3_Silent_p.F169F|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Silent_p.F169F|RGS6_uc010ttp.1_Silent_p.F100F|RGS6_uc001xmz.1_Silent_p.F30F|RGS6_uc010arg.2_RNA	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	169					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		AGTGGGAATTCATCTTTATGC	0.413													16	25					0	0	0.006122	0	0
ZC3H14	79882	broad.mit.edu	37	14	89042269	89042269	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:89042269A>G	uc001xww.2	+	8	1333	c.1108A>G	c.(1108-1110)ACT>GCT	p.T370A	ZC3H14_uc010twd.1_Missense_Mutation_p.T370A|ZC3H14_uc010twe.1_Missense_Mutation_p.T370A|ZC3H14_uc001xwx.2_Missense_Mutation_p.T370A|ZC3H14_uc010twf.1_Missense_Mutation_p.T215A|ZC3H14_uc001xwy.2_Missense_Mutation_p.T336A|ZC3H14_uc010twg.1_Missense_Mutation_p.T215A|ZC3H14_uc001xxa.2_5'UTR	NM_024824	NP_079100	Q6PJT7	ZC3HE_HUMAN	zinc finger CCCH-type containing 14 isoform 1	370						cytoplasm|cytoplasm|nuclear speck	protein binding|RNA binding|zinc ion binding			ovary(2)|skin(1)	3						AACAAAAACAACTAACTACTC	0.318													17	23					0	0	0.006122	0	0
FBLN5	10516	broad.mit.edu	37	14	92336596	92336596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:92336596C>T	uc001xzx.3	-	11	1792	c.1319G>A	c.(1318-1320)CGG>CAG	p.R440Q	TC2N_uc001xzv.3_5'Flank|FBLN5_uc010aud.2_Missense_Mutation_p.R445Q|FBLN5_uc010aue.2_Missense_Mutation_p.R481Q|FBLN5_uc001xzw.2_RNA	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	440					cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				CACATATATCCGCAGTCGGAT	0.552													47	41					0	0	0.003214	0	0
KIAA1409	57578	broad.mit.edu	37	14	94158208	94158208	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:94158208C>T	uc001ybv.1	+	45	7121	c.7038C>T	c.(7036-7038)TTC>TTT	p.F2346F	KIAA1409_uc001ybs.1_Silent_p.F2324F	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2501						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		AGAATGAATTCAGCTTCACGG	0.478													48	44					0	0	0.003610	0	0
ASB2	51676	broad.mit.edu	37	14	94413746	94413746	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:94413746T>C	uc001ycc.1	-	5	1346	c.857A>G	c.(856-858)AAC>AGC	p.N286S	ASB2_uc001ycd.2_Missense_Mutation_p.N334S|ASB2_uc001yce.1_Missense_Mutation_p.N232S	NM_016150	NP_057234	Q96Q27	ASB2_HUMAN	ankyrin repeat and SOCS box-containing protein	286					intracellular signal transduction					ovary(1)|pancreas(1)	2		all_cancers(154;0.13)		COAD - Colon adenocarcinoma(157;0.217)|Epithelial(152;0.232)		GCCGTCCTTGTTGGTCTTGTT	0.632													21	28					0	0	0.002780	0	0
SERPINA10	51156	broad.mit.edu	37	14	94756405	94756405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:94756405C>T	uc001yct.2	-	2	992	c.526G>A	c.(526-528)GAG>AAG	p.E176K	SERPINA10_uc001ycu.3_Missense_Mutation_p.E176K	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	176					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		AAGAAAGTCTCTTTGACATCA	0.453													27	43					0	0	0.006320	0	0
SERPINA11	256394	broad.mit.edu	37	14	94914706	94914706	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:94914706T>G	uc001ydd.1	-	2	466	c.406A>C	c.(406-408)AAA>CAA	p.K136Q		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	136					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		TTTCCTACTTTTAGTTCGAGT	0.532													80	73					0	0	0.003610	0	0
SERPINA4	5267	broad.mit.edu	37	14	95030311	95030311	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:95030311G>A	uc001ydk.2	+	2	558	c.492G>A	c.(490-492)GAG>GAA	p.E164E	SERPINA4_uc010avd.2_Silent_p.E201E|SERPINA4_uc001ydl.2_Silent_p.E164E	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	164					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		CCGTCTATGAGGCTAAACTCT	0.517													39	30					0	0	0.008740	0	0
SERPINA5	5104	broad.mit.edu	37	14	95053711	95053711	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:95053711C>T	uc001ydm.2	+	3	222	c.12C>T	c.(10-12)TTC>TTT	p.F4F	SERPINA5_uc010ave.2_Silent_p.F4F|SERPINA5_uc001ydn.1_Silent_p.F4F	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	4					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	TGCAGCTCTTCCTCCTCTTGT	0.587													38	38					0	0	0.002222	0	0
BDKRB2	624	broad.mit.edu	37	14	96706806	96706806	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:96706806C>T	uc010avm.1	+	3	337	c.141C>T	c.(139-141)TGC>TGT	p.C47C	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Silent_p.C20C|BDKRB2_uc001yfg.2_Silent_p.C47C	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	47	Extracellular (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		AGAGCAAATGCCCCCAAGTGG	0.577													57	59					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106173759	106173759	+	RNA	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:106173759C>T	uc010tyt.1	-	3633		c.60139G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001ysc.2_5'Flank					Parts of antibodies, mostly variable regions.												0						CGGGGCAGCTCCTGTGACCCC	0.672													25	15					0	0	0.008361	0	0
ADAM6	8755	broad.mit.edu	37	14	106208272	106208272	+	RNA	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:106208272C>T	uc010tyt.1	-	3627		c.58942G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Missense_Mutation_p.A76T|uc001ysf.2_Missense_Mutation_p.A76T					Parts of antibodies, mostly variable regions.												0						GCTGGGAGGGCTTTGTTGGAG	0.617													104	144					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106237454	106237454	+	RNA	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:106237454C>T	uc010tyt.1	-	3611		c.57429G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						CTCACCAACTCTCTTGTCCAC	0.647													24	41					0	0	0.003755	0	0
ADAM6	8755	broad.mit.edu	37	14	106586370	106586370	+	RNA	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:106586370G>A	uc010tyt.1	-	1286		c.27860C>T			uc001ysv.2_RNA					Parts of antibodies, mostly variable regions.												0						GCACAGGAGAGTCTCAGGGAC	0.552													36	41					0	0	0.006999	0	0
ADAM6	8755	broad.mit.edu	37	14	106622086	106622086	+	RNA	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:106622086C>T	uc010tyt.1	-	1113		c.25560G>A								Parts of antibodies, mostly variable regions.												0						GGGCCCAGTTCATGTCACTGT	0.592													80	61					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	107083719	107083719	+	RNA	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr14:107083719G>A	uc010tyt.1	-	112		c.5155C>T								Parts of antibodies, mostly variable regions.												0						CTCTCAGAAAGTATTTCCCAT	0.488													6	5					0	0	0.001168	0	0
LOC646214	646214	broad.mit.edu	37	15	21936529	21936529	+	RNA	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:21936529G>A	uc010tzj.1	-	1		c.4211C>T				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						GTAGAAAATGGAAAAAAGAAT	0.363													21	152					0	0	0.008871	0	0
NF1P1	440225	broad.mit.edu	37	15	22143224	22143225	+	RNA	DNP	GG	AA	AA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:22143224_22143225GG>AA	uc010tzs.1	-	3		c.362_363CC>TT								Human NF1-related locus DNA in A9 mouse DNA background.												0						CAGAGCAGTTGGTAGAGTAAAT	0.406													7	49					0	0	0.004672	0	0
OR4N4	283694	broad.mit.edu	37	15	22382823	22382823	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:22382823G>A	uc001yuc.1	+	7	1332	c.351G>A	c.(349-351)GTG>GTA	p.V117V	LOC727924_uc001yub.1_Intron|OR4N4_uc010tzv.1_Silent_p.V117V	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TCCTTGTTGTGATGGCCTTTG	0.507													17	101					0	0	0.002780	0	0
Unknown	0	broad.mit.edu	37	15	22473085	22473085	+	RNA	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:22473085C>T	uc001yuj.1	-	2		c.186G>A								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		CCAGCCCCTTCCCTGGGGGCT	0.572													25	162					0	0	0.002780	0	0
CYFIP1	23191	broad.mit.edu	37	15	22940812	22940812	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:22940812C>T	uc001yus.2	+	11	1181	c.1077C>T	c.(1075-1077)TTC>TTT	p.F359F	CYFIP1_uc001yut.2_Silent_p.F359F|CYFIP1_uc010aya.1_Silent_p.F387F	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	359					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		ACATGCGCTTCATTTCGGAGC	0.607													12	24					0	0	0.002450	0	0
HERC2	8924	broad.mit.edu	37	15	28362298	28362298	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:28362298G>A	uc001zbj.2	-	87	13381	c.13275C>T	c.(13273-13275)GTC>GTT	p.V4425V	HERC2_uc001zbi.2_Silent_p.V114V	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4425					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		TTGATCGTTTGACCTGGAGAG	0.622													14	17					0	0	0.006122	0	0
HERC2	8924	broad.mit.edu	37	15	28502311	28502311	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:28502311G>A	uc001zbj.2	-	17	2519	c.2413C>T	c.(2413-2415)CTG>TTG	p.L805L	HERC2_uc001zbl.1_Silent_p.L500L	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	805					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		TGCCGAAGCAGGAGATCCAGC	0.557													30	35					0	0	0.007291	0	0
C15orf55	256646	broad.mit.edu	37	15	34640675	34640675	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:34640675C>T	uc001zif.2	+	2	677	c.522C>T	c.(520-522)CCC>CCT	p.P174P	C15orf55_uc010ucc.1_Silent_p.P202P|C15orf55_uc010ucd.1_Silent_p.P192P	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	174	Pro-rich.					cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		CCATTGTGCCCCTGGAAAAAG	0.597			T	BRD3|BRD4	lethal midline carcinoma								9	19					0	0	0.006214	0	0
C15orf55	256646	broad.mit.edu	37	15	34647840	34647840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:34647840G>A	uc001zif.2	+	7	1702	c.1547G>A	c.(1546-1548)GGG>GAG	p.G516E	C15orf55_uc010ucc.1_Missense_Mutation_p.G544E|C15orf55_uc010ucd.1_Missense_Mutation_p.G534E	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	516						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		GGGCTTCAGGGGGCTGGGGGC	0.592			T	BRD3|BRD4	lethal midline carcinoma								48	79					0	0	0.003610	0	0
TYRO3	7301	broad.mit.edu	37	15	41861141	41861141	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:41861141C>T	uc001zof.1	+	9	1397	c.1173C>T	c.(1171-1173)ATC>ATT	p.I391I		NM_006293	NP_006284	Q06418	TYRO3_HUMAN	TYRO3 protein tyrosine kinase precursor	391	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			ovary(3)|lung(2)|central_nervous_system(1)	6		all_cancers(109;7.33e-15)|all_epithelial(112;2.8e-12)|Lung NSC(122;3.48e-08)|all_lung(180;1.71e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.31e-18)|GBM - Glioblastoma multiforme(113;9.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.117)		AGGACCTGATCGTACGTGTGT	0.587													15	30					0	0	0.002450	0	0
TMEM87A	25963	broad.mit.edu	37	15	42519037	42519037	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:42519037A>T	uc010udd.1	-	15	1529	c.1370T>A	c.(1369-1371)ATG>AAG	p.M457K		NM_015497	NP_056312	Q8NBN3	TM87A_HUMAN	transmembrane protein 87A isoform 1	457	Helical; (Potential).					integral to membrane				ovary(1)	1		all_cancers(109;4.28e-16)|all_epithelial(112;1.04e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;1.03e-06)		CCAGAGAACCATGATGACAAA	0.483													50	120					0	0	0.003610	0	0
UBR1	197131	broad.mit.edu	37	15	43360109	43360109	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:43360109G>C	uc001zqq.2	-	6	851	c.785C>G	c.(784-786)GCC>GGC	p.A262G	UBR1_uc010udk.1_Missense_Mutation_p.A262G	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	262					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		TTTGTCAATGGCAGTGGTATG	0.468													27	49					0	0	0.005443	0	0
TGM7	116179	broad.mit.edu	37	15	43571474	43571474	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:43571474C>T	uc001zrf.1	-	11	1685	c.1680G>A	c.(1678-1680)GAG>GAA	p.E560E		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	560					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	GCCACTGTGTCTCTAAGCACA	0.498													9	18					0	0	0.004482	0	0
MAP1A	4130	broad.mit.edu	37	15	43817994	43817994	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:43817994G>A	uc001zrt.2	+	4	4790	c.4323G>A	c.(4321-4323)AAG>AAA	p.K1441K		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1441						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	AAAAAGACAAGGCCCTGGAAC	0.448													12	28					0	0	0.000978	0	0
SPG11	80208	broad.mit.edu	37	15	44898230	44898230	+	Silent	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:44898230A>T	uc001ztx.2	-	20	3544	c.3513T>A	c.(3511-3513)GCT>GCA	p.A1171A	SPG11_uc010ueh.1_Silent_p.A1171A|SPG11_uc010uei.1_Silent_p.A1171A	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	1171	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		TACCTCCTATAGCTAGTGTGT	0.373													13	31					0	0	0.004990	0	0
FBN1	2200	broad.mit.edu	37	15	48719795	48719795	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:48719795G>A	uc001zwx.1	-	58	7501	c.7173C>T	c.(7171-7173)CCC>CCT	p.P2391P	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2391					heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		CTCGGCCATGGGGACAGAGTT	0.473													29	51					0	0	0.003271	0	0
ATP8B4	79895	broad.mit.edu	37	15	50212466	50212466	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:50212466C>T	uc001zxu.2	-	18	2042	c.1900G>A	c.(1900-1902)GAA>AAA	p.E634K	ATP8B4_uc010ber.2_Missense_Mutation_p.E507K|ATP8B4_uc010ufd.1_Missense_Mutation_p.E444K|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	634	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TCAATTTCTTCATATAGCCCA	0.393													33	80					0	0	0.005524	0	0
DMXL2	23312	broad.mit.edu	37	15	51773612	51773612	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:51773612G>A	uc002abf.2	-	24	5916	c.5691C>T	c.(5689-5691)TGC>TGT	p.C1897C	DMXL2_uc002abd.2_5'UTR|DMXL2_uc010ufy.1_Silent_p.C1897C|DMXL2_uc010bfa.2_Silent_p.C1261C	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1897						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		CTAAAACAGGGCATCCAACTT	0.358													42	95					0	0	0.002522	0	0
DMXL2	23312	broad.mit.edu	37	15	51791231	51791231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:51791231C>T	uc002abf.2	-	18	4415	c.4190G>A	c.(4189-4191)CGA>CAA	p.R1397Q	DMXL2_uc010ufy.1_Missense_Mutation_p.R1397Q|DMXL2_uc010bfa.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1397						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		ACTAATAGTTCGAGAGAGATG	0.413													65	175					0	0	0.003610	0	0
UNC13C	440279	broad.mit.edu	37	15	54685301	54685301	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:54685301A>T	uc002ack.2	+	16	4769	c.4769A>T	c.(4768-4770)GAT>GTT	p.D1590V	UNC13C_uc002acl.2_Missense_Mutation_p.D420V	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1590					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AAGAATTTGGATTTTTGGCCC	0.393													20	49					0	0	0.001523	0	0
UNC13C	440279	broad.mit.edu	37	15	54825229	54825229	+	Silent	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:54825229T>C	uc002ack.2	+	24	5661	c.5661T>C	c.(5659-5661)ATT>ATC	p.I1887I		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1887	MHD2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ATGCAGAGATTGTGTTAAGAT	0.338													6	8					0	0	0.003080	0	0
NEDD4	4734	broad.mit.edu	37	15	56130018	56130018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:56130018C>T	uc002adj.2	-	20	3788	c.3488G>A	c.(3487-3489)CGA>CAA	p.R1163Q	NEDD4_uc002adl.2_Missense_Mutation_p.R744Q|NEDD4_uc002adi.2_Missense_Mutation_p.R1091Q|NEDD4_uc010ugj.1_Missense_Mutation_p.R1147Q|NEDD4_uc010bfm.2_Missense_Mutation_p.R1146Q|NEDD4_uc002adk.2_Intron	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	1163	HECT.				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		CTTCTGGATTCGGTTTACAAA	0.318													12	28					0	0	0.002450	0	0
GCOM1	145781	broad.mit.edu	37	15	57910270	57910270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:57910270C>T	uc002aei.2	+	3	321	c.202C>T	c.(202-204)CCT>TCT	p.P68S	GCOM1_uc002aej.2_Missense_Mutation_p.P68S|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Missense_Mutation_p.P68S|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.P68S|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	68					intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						CAGGAAACTTCCTCAGGGTGT	0.423													16	32					0	0	0.007413	0	0
AQP9	366	broad.mit.edu	37	15	58465319	58465319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:58465319G>A	uc002aez.2	+	3	648	c.291G>A	c.(289-291)ATG>ATA	p.M97I	ALDH1A2_uc010ugw.1_Intron|AQP9_uc010ugx.1_Missense_Mutation_p.M32I	NM_020980	NP_066190	O43315	AQP9_HUMAN	aquaporin 9	97	Cytoplasmic (Potential).				cellular response to cAMP|excretion|immune response|metabolic process|response to mercury ion|response to osmotic stress|water homeostasis	integral to plasma membrane|intracellular membrane-bounded organelle	amine transmembrane transporter activity|carboxylic acid transmembrane transporter activity|glycerol channel activity|porin activity|purine base transmembrane transporter activity|pyrimidine base transmembrane transporter activity|water channel activity			ovary(1)	1				GBM - Glioblastoma multiforme(80;0.16)		TTGGACGGATGAAATGGTTCA	0.478													76	173					0	0	0.003610	0	0
AQP9	366	broad.mit.edu	37	15	58467217	58467217	+	Silent	SNP	G	A	A	rs140673133	byFrequency	TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:58467217G>A	uc002aez.2	+	4	834	c.477G>A	c.(475-477)GCG>GCA	p.A159A	ALDH1A2_uc010ugw.1_Intron|AQP9_uc010ugx.1_Silent_p.A94A	NM_020980	NP_066190	O43315	AQP9_HUMAN	aquaporin 9	159	Helical; (Potential).				cellular response to cAMP|excretion|immune response|metabolic process|response to mercury ion|response to osmotic stress|water homeostasis	integral to plasma membrane|intracellular membrane-bounded organelle	amine transmembrane transporter activity|carboxylic acid transmembrane transporter activity|glycerol channel activity|porin activity|purine base transmembrane transporter activity|pyrimidine base transmembrane transporter activity|water channel activity			ovary(1)	1				GBM - Glioblastoma multiforme(80;0.16)		TATCTCTGGCGAACGCATTTG	0.418													29	64					0	0	0.008361	0	0
RNF111	54778	broad.mit.edu	37	15	59323125	59323125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:59323125G>A	uc002afv.2	+	2	383	c.104G>A	c.(103-105)GGG>GAG	p.G35E	RNF111_uc002afs.2_Missense_Mutation_p.G35E|RNF111_uc002aft.2_Missense_Mutation_p.G35E|RNF111_uc002afu.2_Missense_Mutation_p.G35E|RNF111_uc002afw.2_Missense_Mutation_p.G35E	NM_017610	NP_060080	Q6ZNA4	RN111_HUMAN	ring finger protein 111	35					multicellular organismal development|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2				all cancers(107;0.194)		AGTCTGAAAGGGATCCTTTTG	0.438													16	38					0	0	0.003163	0	0
TLN2	83660	broad.mit.edu	37	15	63000709	63000709	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:63000709C>T	uc002alb.3	+	18	2181	c.2181C>T	c.(2179-2181)AGC>AGT	p.S727S		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	727					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						AGGTTGTGAGCCCCACTATTA	0.597													25	63					0	0	0.005443	0	0
ZNF609	23060	broad.mit.edu	37	15	64915042	64915042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:64915042C>T	uc002ann.2	+	2	764	c.764C>T	c.(763-765)TCC>TTC	p.S255F		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	255						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						TCCCCTGTTTCCACACCAGCA	0.463													58	130					0	0	0.003610	0	0
C15orf44	81556	broad.mit.edu	37	15	65890674	65890674	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:65890674T>A	uc002apd.2	-	6	1069	c.733A>T	c.(733-735)AAA>TAA	p.K245*	C15orf44_uc010uix.1_Nonsense_Mutation_p.K281*|C15orf44_uc010uiz.1_Nonsense_Mutation_p.K209*|C15orf44_uc010uja.1_Nonsense_Mutation_p.K196*|C15orf44_uc010ujb.1_Nonsense_Mutation_p.K166*|C15orf44_uc002ape.3_Nonsense_Mutation_p.K245*|C15orf44_uc010uiy.1_Nonsense_Mutation_p.K166*	NM_030800	NP_110427	Q96SY0	CO044_HUMAN	hypothetical protein LOC81556 isoform 2	245										ovary(1)	1						TTAATGACTTTAGGGATAGGA	0.373													11	44					0	0	0.001368	0	0
ITGA11	22801	broad.mit.edu	37	15	68608005	68608005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:68608005C>T	uc002ari.2	-	22	2863	c.2776G>A	c.(2776-2778)GAG>AAG	p.E926K	ITGA11_uc010bib.2_Missense_Mutation_p.E926K	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	926	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	GCAGCGAGCTCGATCTCCAGG	0.587													4	20					0	0	0.001984	0	0
KIF23	9493	broad.mit.edu	37	15	69733239	69733239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:69733239C>T	uc002asb.2	+	18	2317	c.2200C>T	c.(2200-2202)CCT>TCT	p.P734S	KIF23_uc002asc.2_Intron|KIF23_uc010bii.2_Missense_Mutation_p.P624S|KIF23_uc010ukc.1_Intron	NM_138555	NP_612565	Q02241	KIF23_HUMAN	kinesin family member 23 isoform 1	734					blood coagulation|cytokinesis|microtubule-based movement|mitosis|mitotic spindle elongation	cytosol|kinesin complex|microtubule|midbody|nucleoplasm|spindle	ATP binding|microtubule motor activity|protein binding				0						GCAGAAAATTCCTACGTACAA	0.502													21	19					0	0	0.001882	0	0
THSD4	79875	broad.mit.edu	37	15	72057427	72057427	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:72057427C>T	uc002atb.1	+	15	2737	c.2658C>T	c.(2656-2658)ACC>ACT	p.T886T	THSD4_uc002ate.2_Silent_p.T526T|THSD4_uc002atg.1_Silent_p.T89T	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	886	TSP type-1 5.					proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						ATGCAGACACCTTTGAAGTGT	0.512													40	66					0	0	0.008740	0	0
CYP11A1	1583	broad.mit.edu	37	15	74630423	74630423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:74630423C>T	uc002axt.2	-	9	1611	c.1456G>A	c.(1456-1458)GAA>AAA	p.E486K	CYP11A1_uc002axs.2_Missense_Mutation_p.E328K|CYP11A1_uc010bjm.1_Missense_Mutation_p.E328K|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Missense_Mutation_p.E404K	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	486					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	TGTTGGATTTCAACTCTGAAG	0.522													31	61					0	0	0.002445	0	0
UBL7	84993	broad.mit.edu	37	15	74742300	74742300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:74742300G>A	uc002axw.1	-	7	803	c.641C>T	c.(640-642)TCC>TTC	p.S214F	UBL7_uc002axx.1_Missense_Mutation_p.S254F|UBL7_uc010bjr.1_Missense_Mutation_p.S105F|UBL7_uc002axy.1_Missense_Mutation_p.S214F|UBL7_uc002axz.1_Missense_Mutation_p.S214F	NM_032907	NP_116296	Q96S82	UBL7_HUMAN	ubiquitin-like 7	214							protein binding			ovary(1)	1						GTATGAGCTGGAGGGCATGCT	0.592													11	23					0	0	0.001855	0	0
ARID3B	10620	broad.mit.edu	37	15	74887993	74887993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:74887993G>A	uc002aye.2	+	9	1765	c.1564G>A	c.(1564-1566)GGG>AGG	p.G522R	ARID3B_uc002ayd.2_Missense_Mutation_p.G521R|CLK3_uc002ayf.1_5'Flank	NM_006465	NP_006456	Q8IVW6	ARI3B_HUMAN	AT rich interactive domain 3B	522					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						CCTCATCACGGGGTCTGCTCC	0.547													13	31					0	0	0.004990	0	0
PTPN9	5780	broad.mit.edu	37	15	75815515	75815515	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:75815515G>A	uc002bal.2	-	4	877	c.369C>T	c.(367-369)GTC>GTT	p.V123V		NM_002833	NP_002824	P43378	PTN9_HUMAN	protein tyrosine phosphatase, non-receptor type	123	CRAL-TRIO.					cytoplasmic part	non-membrane spanning protein tyrosine phosphatase activity|protein binding			lung(1)|skin(1)	2						CCACATGTTGGACTGACTTGT	0.418													19	34					0	0	0.006122	0	0
SNUPN	10073	broad.mit.edu	37	15	75890927	75890927	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:75890927G>A	uc002ban.2	-	9	945	c.855C>T	c.(853-855)GTC>GTT	p.V285V	SNUPN_uc002bao.2_Silent_p.V285V|SNUPN_uc002bap.2_Silent_p.V327V|SNUPN_uc002baq.2_Silent_p.V285V|SNUPN_uc002bar.2_Silent_p.V285V|SNUPN_uc002bas.2_Silent_p.V285V	NM_005701	NP_005692	O95149	SPN1_HUMAN	snurportin 1	285	Necessary for binding to the m3G-cap structure.				ncRNA metabolic process|protein import into nucleus|spliceosomal snRNP assembly	cytosol|nuclear pore	protein transporter activity|RNA cap binding			pancreas(1)	1						CTACACCAAGGACATCTGACA	0.572													76	188					0	0	0.003610	0	0
ISL2	64843	broad.mit.edu	37	15	76630250	76630250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:76630250G>A	uc002bbw.1	+	2	268	c.190G>A	c.(190-192)GAG>AAG	p.E64K		NM_145805	NP_665804	Q96A47	ISL2_HUMAN	ISL LIM homeobox 2	64	LIM zinc-binding 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GTACCTGGACGAGACGTGCAC	0.667													14	35					0	0	0.004990	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79058565	79058565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:79058565G>A	uc002bej.3	-	19	3899	c.3688C>T	c.(3688-3690)CCC>TCC	p.P1230S	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1230					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GGCAGGTGGGGTGCTCCTCGG	0.647													16	35					0	0	0.007413	0	0
BTBD1	53339	broad.mit.edu	37	15	83699002	83699002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:83699002C>T	uc002bjn.2	-	5	1144	c.941G>A	c.(940-942)CGA>CAA	p.R314Q	BTBD1_uc002bjo.2_Missense_Mutation_p.R314Q	NM_025238	NP_079514	Q9H0C5	BTBD1_HUMAN	BTB (POZ) domain containing 1 isoform 1	314						cytoplasmic mRNA processing body|protein complex	protein binding			ovary(1)|central_nervous_system(1)	2				all cancers(203;0.000186)		GTATTCAACTCGGGGTTTAGG	0.448													67	127					0	0	0.003610	0	0
BNC1	646	broad.mit.edu	37	15	83926632	83926632	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:83926632G>A	uc002bjt.1	-	5	2635	c.2547C>T	c.(2545-2547)CCC>CCT	p.P849P	BNC1_uc010uos.1_Silent_p.P837P	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	849					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CCTCGCTCAAGGGGCCAGAGT	0.532													27	56					0	0	0.005443	0	0
BNC1	646	broad.mit.edu	37	15	83932172	83932172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:83932172G>A	uc002bjt.1	-	4	1919	c.1831C>T	c.(1831-1833)CGT>TGT	p.R611C	BNC1_uc010uos.1_Missense_Mutation_p.R599C	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	611					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						ACTGATTCACGATGGCAGGGC	0.547													30	61					0	0	0.002836	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84611694	84611694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:84611694G>A	uc002bjz.3	+	19	2574	c.2350G>A	c.(2350-2352)GTC>ATC	p.V784I	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.V784I|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.V784I	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	784	TSP type-1 6.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GAACAGAAGAGTCACCTGTCG	0.547													14	36					0	0	0.001855	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84651197	84651197	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:84651197C>T	uc002bjz.3	+	21	3041	c.2817C>T	c.(2815-2817)TTC>TTT	p.F939F	ADAMTSL3_uc010bmt.1_Silent_p.F939F|ADAMTSL3_uc010bmu.1_Silent_p.F939F	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	939	Ig-like C2-type 1.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TGCGACGATTCCAGAAATCTC	0.498													42	70					0	0	0.002522	0	0
FANCI	55215	broad.mit.edu	37	15	89848902	89848902	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:89848902G>A	uc010bnp.1	+	31	3412	c.3322G>A	c.(3322-3324)GGA>AGA	p.G1108R	FANCI_uc002bnm.1_Missense_Mutation_p.G1048R|FANCI_uc002bnn.1_RNA|FANCI_uc002bnp.1_Missense_Mutation_p.G869R|FANCI_uc002bnq.1_Missense_Mutation_p.G521R	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	1108					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					CAAGCTTAAGGGACAAGTGAG	0.433								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				29	56					0	0	0.007291	0	0
FAM174B	400451	broad.mit.edu	37	15	93277250	93277250	+	RNA	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:93277250G>A	uc002bsl.3	-	1		c.55C>T						Q3ZCQ3	F174B_HUMAN	Homo sapiens cDNA PSEC0264 fis, clone NT2RP3002337.							integral to membrane					0						GAGGTACCCCGGAATCGCAGC	0.587													16	21					0	0	0.007413	0	0
SPATA8	145946	broad.mit.edu	37	15	97326937	97326937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr15:97326937G>A	uc002bue.2	+	1	262	c.52G>A	c.(52-54)GAA>AAA	p.E18K	uc010uro.1_5'Flank|uc010urp.1_5'Flank|uc002bud.1_5'Flank	NM_173499	NP_775770	Q6RVD6	SPAT8_HUMAN	spermatogenesis associated 8	18										ovary(1)|skin(1)	2	Melanoma(26;0.0142)|Lung NSC(78;0.041)|all_lung(78;0.0468)		OV - Ovarian serous cystadenocarcinoma(32;0.0718)			TCTCTACCAGGAAATTGCCCC	0.552													21	48					0	0	0.001523	0	0
RHBDL1	9028	broad.mit.edu	37	16	727513	727513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:727513G>A	uc002cis.1	+	5	965	c.938G>A	c.(937-939)GGC>GAC	p.G313D	RHBDL1_uc002cir.1_Missense_Mutation_p.G248D|RHBDL1_uc010uun.1_Missense_Mutation_p.G248D|STUB1_uc002cit.2_5'Flank|STUB1_uc002ciu.2_5'Flank|STUB1_uc010bqz.2_5'Flank|STUB1_uc002civ.2_5'Flank	NM_003961	NP_003952	O75783	RHBL1_HUMAN	rhomboid protease 1	313	Helical; (Potential).				proteolysis|signal transduction	integral to plasma membrane|membrane fraction	calcium ion binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.0218)				GGAGGCTCCGGCGGGGTCTAC	0.721													11	25					0	0	0.002450	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270431	1270431	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:1270431G>A	uc002cks.2	+	35	6747	c.6499G>A	c.(6499-6501)GAG>AAG	p.E2167K	CACNA1H_uc002ckt.2_Missense_Mutation_p.E2161K|CACNA1H_uc002cku.2_Missense_Mutation_p.E862K|CACNA1H_uc010brj.2_Missense_Mutation_p.E878K|CACNA1H_uc002ckv.2_Missense_Mutation_p.E856K	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2167	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	GGAGCCTGGGGAGGCGAAGGC	0.711													11	27					0	0	0.001368	0	0
TELO2	9894	broad.mit.edu	37	16	1547053	1547053	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:1547053C>T	uc002cly.2	+	4	921	c.630C>T	c.(628-630)TCC>TCT	p.S210S	TELO2_uc010uvg.1_Silent_p.S210S	NM_016111	NP_057195	Q9Y4R8	TELO2_HUMAN	TEL2, telomere maintenance 2, homolog	210						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding				0		Hepatocellular(780;0.219)				TGGATTCCTCCGTGTCCTTCG	0.617													16	20					0	0	0.004007	0	0
TBL3	10607	broad.mit.edu	37	16	2025693	2025694	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:2025693_2025694CC>TT	uc002cnu.1	+	10	1071_1072	c.969_970CC>TT	c.(967-972)TCCCTG>TCTTTG	p.323_324SL>SL	TBL3_uc002cnv.1_Silent_p.209_210SL>SL|TBL3_uc010bsb.1_Silent_p.112_113SL>SL|TBL3_uc010bsc.1_Silent_p.209_210SL>SL|TBL3_uc010uvt.1_5'UTR|TBL3_uc002cnw.1_5'Flank	NM_006453	NP_006444	Q12788	TBL3_HUMAN	transducin beta-like 3	323_324	WD 6.				G-protein signaling, coupled to cGMP nucleotide second messenger|rRNA processing	nucleolus|small-subunit processome	receptor signaling protein activity				0						AGGCTCGCTCCCTGCGGCTGCA	0.668													14	29					0	0	0.004672	0	0
ZG16B	124220	broad.mit.edu	37	16	2880726	2880726	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:2880726C>T	uc002cru.2	+	3	268	c.192C>T	c.(190-192)TTC>TTT	p.F64F		NM_145252	NP_660295	Q96DA0	ZG16B_HUMAN	zymogen granule protein 16 homolog B precursor	64						extracellular region	sugar binding			ovary(1)	1						GCAAGTATTTCAGCACCACTG	0.527													59	111					0	0	0.003610	0	0
FLYWCH1	84256	broad.mit.edu	37	16	2979713	2979713	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:2979713G>A	uc002csd.2	+	3	390	c.27G>A	c.(25-27)CAG>CAA	p.Q9Q	FLYWCH1_uc002csb.2_Silent_p.Q9Q|FLYWCH1_uc002csc.2_Silent_p.Q9Q	NM_032296	NP_115672	Q4VC44	FWCH1_HUMAN	FLYWCH-type zinc finger 1 isoform a	9						nucleus	DNA binding|metal ion binding				0						CCAGCGAGCAGGAGGGCGAGA	0.692													6	11					0	0	0.003080	0	0
TRAP1	10131	broad.mit.edu	37	16	3727657	3727657	+	Silent	SNP	G	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:3727657G>T	uc002cvt.3	-	6	635	c.546C>A	c.(544-546)GCC>GCA	p.A182A	TRAP1_uc002cvs.2_5'UTR|TRAP1_uc010uxf.1_Silent_p.A129A	NM_016292	NP_057376	Q12931	TRAP1_HUMAN	TNF receptor-associated protein 1 precursor	182					cellular response to oxidative stress|protein folding	mitochondrion	ATP binding|tumor necrosis factor receptor binding|unfolded protein binding			central_nervous_system(1)	1		Ovarian(90;0.0261)				CATCCAGGAAGGCCTGTGGGG	0.587													18	35					6.49762e-13	7.30019e-13	0.006122	1	0
SEPT12	124404	broad.mit.edu	37	16	4833547	4833547	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:4833547G>A	uc002cxq.2	-	7	783	c.642C>T	c.(640-642)AAC>AAT	p.N214N	SEPT12_uc002cxr.2_Silent_p.N168N|SEPT12_uc010bty.2_RNA	NM_144605	NP_653206	Q8IYM1	SEP12_HUMAN	septin 12 isoform 2	214					cell cycle|cell division	cleavage furrow|midbody|perinuclear region of cytoplasm|septin complex|spindle|stress fiber	GDP binding|GTP binding|phosphatidylinositol binding|protein homodimerization activity			skin(1)	1						GGGTCCTCAGGTTCTGCTGGA	0.607													36	70					0	0	0.002222	0	0
SEC14L5	9717	broad.mit.edu	37	16	5046880	5046880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:5046880C>T	uc002cye.2	+	8	985	c.805C>T	c.(805-807)CGG>TGG	p.R269W		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	269						integral to membrane|intracellular	transporter activity				0						GCACATCCTTCGGTTCCTGCG	0.507													10	24					0	0	0.008291	0	0
USP7	7874	broad.mit.edu	37	16	8996003	8996003	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:8996003G>A	uc002czl.2	-	18	2182	c.1983C>T	c.(1981-1983)TTC>TTT	p.F661F	USP7_uc010uyk.1_Silent_p.F562F|USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Silent_p.F562F|USP7_uc002czk.2_Silent_p.F645F|USP7_uc010uyl.1_RNA	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	661	Interaction with ICP0/VMW110.				interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						CTGTTTCCAGGAATATTGTCC	0.463													21	75					0	0	0.003330	0	0
TEKT5	146279	broad.mit.edu	37	16	10721525	10721525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:10721525G>A	uc002czz.1	-	7	1445	c.1373C>T	c.(1372-1374)GCC>GTC	p.A458V		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	458					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						GAGGGTGTTGGCCTTGATGGC	0.657													27	47					0	0	0.005443	0	0
SNX29	92017	broad.mit.edu	37	16	12662380	12662380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:12662380G>A	uc002dby.3	+	14	1237	c.1181G>A	c.(1180-1182)GGA>GAA	p.G394E		NM_001080530	NP_001073999	Q8TEQ0	SNX29_HUMAN	sorting nexin 29	394	PX.				cell communication		phosphatidylinositol binding			ovary(1)	1						ACCCCGCCCGGAGAGCCTGTG	0.632													12	36					0	0	0.002450	0	0
MKL2	57496	broad.mit.edu	37	16	14328110	14328110	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:14328110C>T	uc010uza.1	+	9	956	c.801C>T	c.(799-801)TCC>TCT	p.S267S	MKL2_uc002dcg.2_Silent_p.S267S|MKL2_uc002dch.2_Silent_p.S256S|MKL2_uc010uzb.1_Silent_p.S216S	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	256					cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						ACACTGTGTCCTCAGCAAAGC	0.532													19	43					0	0	0.007413	0	0
NOMO1	23420	broad.mit.edu	37	16	14973896	14973896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:14973896C>T	uc002dcv.2	+	24	2848	c.2782C>T	c.(2782-2784)CCC>TCC	p.P928S		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	928	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						TTACTTCAAACCCATGATGAA	0.517													41	128					0	0	0.003610	0	0
KIAA0430	9665	broad.mit.edu	37	16	15709850	15709850	+	Silent	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:15709850A>G	uc002ddr.2	-	16	3283	c.3090T>C	c.(3088-3090)TGT>TGC	p.C1030C	KIAA0430_uc002ddq.2_Silent_p.C864C|KIAA0430_uc010uzv.1_Silent_p.C1026C|KIAA0430_uc010uzw.1_Silent_p.C1029C	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	1029						peroxisome	nucleotide binding|RNA binding				0						CTGCAATGTAACAATCTGGAA	0.383													39	106					0	0	0.002522	0	0
TMC7	79905	broad.mit.edu	37	16	19020599	19020599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:19020599C>T	uc002dfq.2	+	2	303	c.173C>T	c.(172-174)TCC>TTC	p.S58F	TMC7_uc010vao.1_Missense_Mutation_p.S58F|TMC7_uc002dfp.2_Missense_Mutation_p.S58F|TMC7_uc010vap.1_5'UTR	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	58	Extracellular (Potential).					integral to membrane				skin(2)|ovary(1)	3						ACTGTCCATTCCCGGGACAAG	0.517													21	37					0	0	0.001882	0	0
SYT17	51760	broad.mit.edu	37	16	19236021	19236021	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:19236021C>T	uc002dfw.2	+	7	1420	c.1089C>T	c.(1087-1089)ATC>ATT	p.I363I	SYT17_uc002dfx.2_Silent_p.I302I|SYT17_uc002dfy.2_Silent_p.I359I|SYT17_uc002dfv.1_Silent_p.I302I	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	363	C2 2.					membrane|synaptic vesicle	transporter activity			ovary(1)	1						TTGTGAAAATCCAGCTGGTGC	0.408													26	37					0	0	0.006320	0	0
TMC5	79838	broad.mit.edu	37	16	19451378	19451378	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:19451378G>A	uc002dgc.3	+	3	767	c.18G>A	c.(16-18)AGG>AGA	p.R6R	TMC5_uc010vaq.1_Silent_p.R6R|TMC5_uc002dgb.3_Silent_p.R6R|TMC5_uc010var.1_Silent_p.R6R	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	6	Extracellular (Potential).					integral to membrane				skin(1)	1						CCTACTACAGGAATAACTGGT	0.448													21	64					0	0	0.002780	0	0
TMC5	79838	broad.mit.edu	37	16	19452014	19452014	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:19452014C>T	uc002dgc.3	+	3	1403	c.654C>T	c.(652-654)CCC>CCT	p.P218P	TMC5_uc010vaq.1_Silent_p.P218P|TMC5_uc002dgb.3_Silent_p.P218P|TMC5_uc010var.1_Silent_p.P218P	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	218	Extracellular (Potential).					integral to membrane				skin(1)	1						ACTCTCCACCCTTTTTTGGGG	0.448													25	57					0	0	0.003954	0	0
TMC5	79838	broad.mit.edu	37	16	19460909	19460909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:19460909G>A	uc002dgc.3	+	5	1753	c.1004G>A	c.(1003-1005)GGA>GAA	p.G335E	TMC5_uc010vaq.1_Missense_Mutation_p.G335E|TMC5_uc002dgb.3_Missense_Mutation_p.G335E|TMC5_uc010var.1_Missense_Mutation_p.G335E	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	335	Extracellular (Potential).					integral to membrane				skin(1)	1						CATGCTTATGGAAACCCACCA	0.358													49	103					0	0	0.003610	0	0
TMC5	79838	broad.mit.edu	37	16	19475337	19475337	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:19475337C>T	uc002dgc.3	+	8	2225	c.1476C>T	c.(1474-1476)TTC>TTT	p.F492F	TMC5_uc010vaq.1_Silent_p.F492F|TMC5_uc002dgb.3_Silent_p.F492F|TMC5_uc010var.1_Silent_p.F492F|TMC5_uc002dgd.1_Silent_p.F246F|TMC5_uc002dge.3_Silent_p.F246F|TMC5_uc002dgf.3_Silent_p.F175F|TMC5_uc002dgg.3_Silent_p.F133F	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	492	Helical; (Potential).					integral to membrane				skin(1)	1						TGGAGTTTTTCACTGGGGTGG	0.512													13	38					0	0	0.003163	0	0
DCUN1D3	123879	broad.mit.edu	37	16	20871470	20871471	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:20871470_20871471GG>AA	uc002dhz.2	-	3	793_794	c.652_653CC>TT	c.(652-654)CCT>TTT	p.P218F	ERI2_uc002dht.3_Intron	NM_173475	NP_775746	Q8IWE4	DCNL3_HUMAN	DCN1, defective in cullin neddylation 1, domain	218	DCUN1.				negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|positive regulation of apoptosis|response to gamma radiation|response to UV-C	perinuclear region of cytoplasm				ovary(2)	2				GBM - Glioblastoma multiforme(48;0.249)		CAATACCGGAGGATTGTTCTGG	0.5													58	112					0	0	0.004672	0	0
RRN3P3	100131998	broad.mit.edu	37	16	22441236	22441236	+	RNA	SNP	G	A	A	rs114681793	by1000genomes	TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:22441236G>A	uc002dkp.2	-	5		c.1170C>T			RRN3P3_uc010vbu.1_RNA	NR_027460				Homo sapiens cDNA FLJ31180 fis, clone KIDNE2000266.												0						TGTTCCTCTCGATGATGGTGT	0.507													7	51					0	0	0.001984	0	0
CHP2	63928	broad.mit.edu	37	16	23767750	23767750	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:23767750T>G	uc002dmb.1	+	5	817	c.394T>G	c.(394-396)TCC>GCC	p.S132A		NM_022097	NP_071380	O43745	CHP2_HUMAN	hepatocellular carcinoma antigen gene 520	132	EF-hand 3.|1 (Potential).						calcium ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(48;0.0144)		TGGGAAGATCTCCAGGCATGA	0.542													11	15					0	0	0.008291	0	0
CHP2	63928	broad.mit.edu	37	16	23768600	23768600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:23768600G>A	uc002dmb.1	+	6	916	c.493G>A	c.(493-495)GAT>AAT	p.D165N		NM_022097	NP_071380	O43745	CHP2_HUMAN	hepatocellular carcinoma antigen gene 520	165	2 (Potential).|EF-hand 4.						calcium ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(48;0.0144)		GCAGGAGGCTGATGAAGATGG	0.567													15	36					0	0	0.002450	0	0
RBBP6	5930	broad.mit.edu	37	16	24573272	24573272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:24573272C>T	uc002dmh.2	+	10	2119	c.1079C>T	c.(1078-1080)TCT>TTT	p.S360F	RBBP6_uc010vcb.1_Missense_Mutation_p.S227F|RBBP6_uc002dmi.2_Missense_Mutation_p.S360F|RBBP6_uc010bxr.2_Missense_Mutation_p.S360F|RBBP6_uc002dmk.2_Missense_Mutation_p.S227F	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	360					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		CTGATGAGATCTCCGATATCA	0.443													23	66					0	0	0.001882	0	0
RABEP2	79874	broad.mit.edu	37	16	28925996	28925996	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:28925996G>A	uc002drq.2	-	4	588	c.540C>T	c.(538-540)ATC>ATT	p.I180I	uc010vct.1_Intron|RABEP2_uc010vdf.1_Silent_p.I109I|RABEP2_uc010byn.2_Silent_p.I180I|RABEP2_uc002drr.2_Silent_p.I180I	NM_024816	NP_079092	Q9H5N1	RABE2_HUMAN	rabaptin, RAB GTPase binding effector protein 2	180	Potential.				endocytosis|protein transport	early endosome	growth factor activity|GTPase activator activity			ovary(1)|breast(1)|skin(1)	3						CCCTCACCTGGATCTCCTGAA	0.662													31	82					0	0	0.003755	0	0
SETD1A	9739	broad.mit.edu	37	16	30980955	30980955	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:30980955T>G	uc002ead.1	+	12	3647	c.2961T>G	c.(2959-2961)GAT>GAG	p.D987E		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	987	Glu-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						ATGAGGAAGATGAAGATCGAG	0.507													9	25					0	0	0.004482	0	0
ITGAM	3684	broad.mit.edu	37	16	31336715	31336715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:31336715C>T	uc002ebq.2	+	20	2593	c.2495C>T	c.(2494-2496)TCC>TTC	p.S832F	ITGAM_uc002ebr.2_Missense_Mutation_p.S833F|ITGAM_uc010can.2_Missense_Mutation_p.S238F|ITGAM_uc002ebs.1_Missense_Mutation_p.S238F|ITGAM_uc010vfj.1_RNA	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	832	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						CGGAAGGTGTCCACGCTCCAG	0.562													13	51					0	0	0.004007	0	0
ITGAX	3687	broad.mit.edu	37	16	31383821	31383821	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:31383821C>T	uc002ebu.1	+	18	2350	c.2283C>T	c.(2281-2283)TTC>TTT	p.F761F	ITGAX_uc002ebt.2_Silent_p.F761F	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	761	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGAGATACTTCACGGCCTCCG	0.632													19	32					0	0	0.007413	0	0
HERC2P4	440362	broad.mit.edu	37	16	32163545	32163545	+	RNA	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:32163545C>T	uc002ecx.2	-	2		c.226G>A				NR_002827				Homo sapiens hect domain and RLD 2 pseudogene 4, mRNA (cDNA clone IMAGE:5416019).												0						CCAAACTCATCGTGCACAATT	0.582													9	71					0	0	0.008291	0	0
UBE2MP1	606551	broad.mit.edu	37	16	34404226	34404226	+	RNA	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:34404226A>T	uc002edv.1	-	1		c.537T>A				NR_002837				full-length cDNA clone CS0DH003YB23 of T cells (Jurkat cell line) of Homo sapiens (human).												0						TGCAGGCCATAAATTATGGAG	0.517													11	24					0	0	0.008291	0	0
UBE2MP1	606551	broad.mit.edu	37	16	34404247	34404247	+	RNA	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:34404247G>A	uc002edv.1	-	1		c.516C>T				NR_002837				full-length cDNA clone CS0DH003YB23 of T cells (Jurkat cell line) of Homo sapiens (human).												0						TTTATCGTAAGGACTGGCTTC	0.512													12	28					0	0	0.000978	0	0
ABCC12	94160	broad.mit.edu	37	16	48173146	48173146	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:48173146C>T	uc002efc.1	-	5	1105	c.759G>A	c.(757-759)GCG>GCA	p.A253A	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Silent_p.A253A|ABCC12_uc010vgj.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	253	ABC transmembrane type-1 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				AAAAGGCGTACGCCGCACAAA	0.473													33	48					0	0	0.002096	0	0
CX3CL1	6376	broad.mit.edu	37	16	57416259	57416260	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:57416259_57416260CC>TT	uc002eli.2	+	3	576_577	c.509_510CC>TT	c.(508-510)CCC>CTT	p.P170L		NM_002996	NP_002987	P78423	X3CL1_HUMAN	chemokine (C-X3-C motif) ligand 1 precursor	170	Mucin-like stalk.|Extracellular (Potential).				cell adhesion|cytokine-mediated signaling pathway|defense response|immune response|leukocyte adhesive activation|positive regulation of calcium-independent cell-cell adhesion|positive regulation of inflammatory response	cell surface|extracellular space|integral to membrane|plasma membrane	chemokine activity				0						ACCAGGCTCCCCCCGACGCCAA	0.678													29	39					0	0	0.004672	0	0
CCDC102A	92922	broad.mit.edu	37	16	57546746	57546746	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:57546746C>T	uc002elw.2	-	9	1773	c.1560G>A	c.(1558-1560)GGG>GGA	p.G520G		NM_033212	NP_149989	Q96A19	C102A_HUMAN	coiled-coil domain containing 102A	520										ovary(1)	1						TGCGGATCTTCCCGAAGAGGG	0.637													29	50					0	0	0.008361	0	0
CNOT1	23019	broad.mit.edu	37	16	58570932	58570932	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:58570932G>A	uc002env.2	-	39	5900	c.5607C>T	c.(5605-5607)GGC>GGT	p.G1869G	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Silent_p.G1864G|CNOT1_uc010vik.1_Silent_p.G826G	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	1869					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		TACTGTCGCGGCCAGCTGCTG	0.483													35	58					0	0	0.006230	0	0
PLEKHG4	25894	broad.mit.edu	37	16	67314616	67314616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:67314616C>T	uc002eso.3	+	2	3037	c.502C>T	c.(502-504)CCC>TCC	p.P168S	PLEKHG4_uc002esp.3_5'UTR|PLEKHG4_uc002esq.3_Missense_Mutation_p.P168S|PLEKHG4_uc002esr.1_Intron|PLEKHG4_uc010cef.2_Missense_Mutation_p.P168S|PLEKHG4_uc002ess.3_Missense_Mutation_p.P168S|PLEKHG4_uc010ceg.2_Intron	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	168					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		TTCCCAAGCCCCCAGTGGATC	0.612													23	63					0	0	0.003954	0	0
HYDIN	54768	broad.mit.edu	37	16	71163659	71163659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:71163659C>T	uc002ezr.2	-	9	1239	c.1111G>A	c.(1111-1113)GAT>AAT	p.D371N	HYDIN_uc010cfz.1_Missense_Mutation_p.D116N|HYDIN_uc002ezv.2_Missense_Mutation_p.D371N|HYDIN_uc010vmc.1_Missense_Mutation_p.D388N|HYDIN_uc010vmd.1_Missense_Mutation_p.D398N|HYDIN_uc002ezw.3_Missense_Mutation_p.D388N	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	371										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGTAAAGGATCAGTAATGCAC	0.443													7	15					0	0	0.001855	0	0
CHST4	10164	broad.mit.edu	37	16	71571180	71571180	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:71571180C>T	uc002fan.2	+	2	781	c.600C>T	c.(598-600)ATC>ATT	p.I200I	CHST4_uc002fao.2_Silent_p.I200I	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	200	Lumenal (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						ACCTGCATATCGTGCACCTGG	0.607													11	35					0	0	0.008291	0	0
TAT	6898	broad.mit.edu	37	16	71610158	71610158	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:71610158T>C	uc002fap.2	-	2	260	c.161A>G	c.(160-162)AAC>AGC	p.N54S	TAT_uc002faq.2_Missense_Mutation_p.N54S|TAT_uc002far.2_Missense_Mutation_p.N54S	NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	54					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	TCGGATGGGGTTGAAAGTTTT	0.507													10	26					0	0	0.008291	0	0
ZFHX3	463	broad.mit.edu	37	16	72827743	72827743	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:72827743C>T	uc002fck.2	-	9	9511	c.8838G>A	c.(8836-8838)CAG>CAA	p.Q2946Q	ZFHX3_uc002fcl.2_Silent_p.Q2032Q	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2946	Homeobox 4.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GAAAACGTTTCTGCCCAGGCC	0.527													24	67					0	0	0.003330	0	0
CLEC18B	497190	broad.mit.edu	37	16	74455147	74455147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:74455147G>A	uc002fct.2	-	1	222	c.22C>T	c.(22-24)CCT>TCT	p.P8S	CLEC18B_uc002fcu.2_Missense_Mutation_p.P8S|CLEC18B_uc010vmu.1_Missense_Mutation_p.P8S|CLEC18B_uc010vmw.1_Missense_Mutation_p.P8S	NM_001011880	NP_001011880	Q6UXF7	CL18B_HUMAN	C-type lectin domain family 18, member B	8						extracellular region	sugar binding				0						CCCCGGCCAGGGGAGGTCTCT	0.682													21	40					0	0	0.001882	0	0
GLG1	2734	broad.mit.edu	37	16	74493682	74493682	+	Silent	SNP	G	A	A	rs139538436		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:74493682G>A	uc002fcy.3	-	23	3092	c.3042C>T	c.(3040-3042)TCC>TCT	p.S1014S	GLG1_uc002fcx.2_Silent_p.S1014S|GLG1_uc002fcw.3_Silent_p.S1003S|GLG1_uc002fcz.3_Silent_p.S431S	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	1014	Extracellular (Potential).|Cys-rich GLG1 15.					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						CACATAGACTGGAGATCTGTT	0.383													10	17					0	0	0.000978	0	0
SLC38A8	146167	broad.mit.edu	37	16	84066964	84066964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:84066964G>A	uc002fhg.1	-	3	499	c.499C>T	c.(499-501)CCG>TCG	p.P167S		NM_001080442	NP_001073911	A6NNN8	S38A8_HUMAN	solute carrier family 38, member 8	167	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane					0						ATCTCCCGCGGGGCAGACAGG	0.657													54	133					0	0	0.003610	0	0
TAF1C	9013	broad.mit.edu	37	16	84214762	84214762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:84214762G>A	uc002fhn.2	-	11	1501	c.1273C>T	c.(1273-1275)CGT>TGT	p.R425C	TAF1C_uc002fhm.2_Missense_Mutation_p.R332C|TAF1C_uc010vnx.1_Missense_Mutation_p.R399C|TAF1C_uc010vny.1_Missense_Mutation_p.R16C|TAF1C_uc010vnz.1_Missense_Mutation_p.R93C|TAF1C_uc002fho.2_Intron|TAF1C_uc010voa.1_Missense_Mutation_p.R93C|TAF1C_uc002fhp.1_Intron	NM_005679	NP_005670	Q15572	TAF1C_HUMAN	TBP-associated factor 1C isoform 1	425					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding			ovary(1)	1						GCCCCCAAACGAAAAAGCAAC	0.632													20	39					0	0	0.001882	0	0
ADAD2	161931	broad.mit.edu	37	16	84229830	84229830	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:84229830C>T	uc002fhr.2	+	8	1494	c.1380C>T	c.(1378-1380)GTC>GTT	p.V460V	ADAD2_uc002fhq.2_Silent_p.V542V|uc002fhs.1_Intron	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform	460	A to I editase.				RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						CTCCCTACGTCCGGACCGCCC	0.697													23	59					0	0	0.003954	0	0
ATP2C2	9914	broad.mit.edu	37	16	84488422	84488422	+	Splice_Site	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:84488422A>C	uc002fhx.2	+	21	2070	c.1981_splice	c.e21-2	p.A661_splice	ATP2C2_uc010chj.2_Splice_Site_p.A661_splice|ATP2C2_uc002fhy.2_Splice_Site_p.A678_splice|ATP2C2_uc002fhz.2_Splice_Site_p.A510_splice	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2						ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						CTCTTTCCAAAGGCTCTGCAG	0.607													11	32					0	0	0.000978	0	0
KLHL36	79786	broad.mit.edu	37	16	84690709	84690709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:84690709C>T	uc002fig.2	+	3	437	c.296C>T	c.(295-297)GCC>GTC	p.A99V	KLHL36_uc010chl.2_Missense_Mutation_p.A98V	NM_024731	NP_079007	Q8N4N3	KLH36_HUMAN	kelch-like 36	99	BTB.									skin(2)	2						GGGCTCAAGGCCGTGGTGGAC	0.597													9	24					0	0	0.006214	0	0
CRISPLD2	83716	broad.mit.edu	37	16	84882995	84882995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:84882995C>T	uc010voh.1	+	4	591	c.364C>T	c.(364-366)CGC>TGC	p.R122C	CRISPLD2_uc010vog.1_Intron|CRISPLD2_uc002fio.2_Missense_Mutation_p.R122C|CRISPLD2_uc002fim.2_Missense_Mutation_p.R122C|CRISPLD2_uc002fin.3_Missense_Mutation_p.R122C	NM_031476	NP_113664	Q9H0B8	CRLD2_HUMAN	cysteine-rich secretory protein LCCL domain	122						extracellular region|transport vesicle					0						CTGCAGGTATCGCTCTCCGGG	0.642													26	41					0	0	0.007291	0	0
IRF8	3394	broad.mit.edu	37	16	85952177	85952177	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:85952177C>T	uc002fjh.2	+	7	813	c.756C>T	c.(754-756)TTC>TTT	p.F252F	IRF8_uc010chp.2_Intron	NM_002163	NP_002154	Q02556	IRF8_HUMAN	interferon regulatory factor 8	252					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(2)|ovary(1)	3		Prostate(104;0.0771)				TGGTGCGCTTCCCGCCGGCCG	0.736													11	29					0	0	0.008291	0	0
MTHFSD	64779	broad.mit.edu	37	16	86575369	86575369	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:86575369G>A	uc002fjn.2	-	7	666	c.615C>T	c.(613-615)CTC>CTT	p.L205L	MTHFSD_uc010voo.1_Silent_p.L185L|MTHFSD_uc002fjo.2_Silent_p.L42L|MTHFSD_uc002fjm.2_Silent_p.L204L|MTHFSD_uc010vop.1_Silent_p.L42L|MTHFSD_uc010voq.1_Silent_p.L204L|MTHFSD_uc010vor.1_Silent_p.L205L|MTHFSD_uc002fjp.2_Silent_p.L185L	NM_001159377	NP_001152849	Q2M296	MTHSD_HUMAN	methenyltetrahydrofolate synthetase domain	205					folic acid-containing compound biosynthetic process		5-formyltetrahydrofolate cyclo-ligase activity|ATP binding|RNA binding				0						TGGTTGGAGTGAGGATGTAGT	0.582													29	60					0	0	0.005443	0	0
CDH15	1013	broad.mit.edu	37	16	89261465	89261465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr16:89261465C>T	uc002fmt.2	+	14	2424	c.2347C>T	c.(2347-2349)CCG>TCG	p.P783S		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	783	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		GTATGGGCACCCGTGCGGGTT	0.662													14	37					0	0	0.002450	0	0
GEMIN4	50628	broad.mit.edu	37	17	650010	650010	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:650010A>T	uc002frs.1	-	2	1392	c.1273T>A	c.(1273-1275)TTT>ATT	p.F425I	GEMIN4_uc010vqa.1_3'UTR	NM_015721	NP_056536	P57678	GEMI4_HUMAN	gemin 4	425					rRNA processing|spliceosomal snRNP assembly	Cajal body|cytosol|nucleolus|small nuclear ribonucleoprotein complex|spliceosomal complex	protein binding			ovary(2)|kidney(1)|skin(1)	4		Myeloproliferative disorder(207;0.204)		UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		TCAGAGGCAAAAATGTAGCAC	0.562													11	27					0	0	0.008291	0	0
OR3A4	390756	broad.mit.edu	37	17	3213760	3213760	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:3213760C>T	uc002fvi.2	+	1	222	c.156C>T	c.(154-156)ATC>ATT	p.I52I		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						TGGCGGCCATCCTTATGGAAA	0.547													25	44					0	0	0.003954	0	0
OR3A4	390756	broad.mit.edu	37	17	3213868	3213868	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:3213868C>T	uc002fvi.2	+	1	330	c.264C>T	c.(262-264)TTC>TTT	p.F88F		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						TGAGCCATTTCATATCCAACG	0.542													10	62					0	0	0.004007	0	0
PLD2	5338	broad.mit.edu	37	17	4726006	4726006	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:4726006C>T	uc002fzc.2	+	25	2750	c.2649C>T	c.(2647-2649)CCC>CCT	p.P883P	PLD2_uc002fzd.2_Silent_p.P872P	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	883					cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	CCGTGGAGCCCTTGGCCACGG	0.647													40	56					0	0	0.002852	0	0
KIF1C	10749	broad.mit.edu	37	17	4926928	4926928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:4926928C>T	uc002gan.1	+	23	3120	c.2794C>T	c.(2794-2796)CCT>TCT	p.P932S		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	932					microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						GGAGGAGGACCCTGCCTTCCG	0.716													14	35					0	0	0.001855	0	0
DERL2	51009	broad.mit.edu	37	17	5388504	5388504	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:5388504G>A	uc002gcc.1	-	2	142	c.126C>T	c.(124-126)TAC>TAT	p.Y42Y	MIS12_uc002gcd.2_5'Flank|MIS12_uc002gce.2_5'Flank	NM_016041	NP_057125	Q9GZP9	DERL2_HUMAN	Der1-like domain family, member 2	42	Cytoplasmic (Potential).				endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of cell growth|positive regulation of cell proliferation|retrograde protein transport, ER to cytosol	integral to endoplasmic reticulum membrane	protein binding				0						CAGGATTGAAGTACAACTGAA	0.294													11	21					0	0	0.001368	0	0
BCL6B	255877	broad.mit.edu	37	17	6929856	6929856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:6929856G>A	uc002geg.2	+	6	1027	c.970G>A	c.(970-972)GAA>AAA	p.E324K	BCL6B_uc010clt.1_Missense_Mutation_p.E325K	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	324						nucleus	zinc ion binding			skin(1)	1						TCCTGGGGACGAAGACAAACC	0.562													48	47					0	0	0.003610	0	0
WDR16	146845	broad.mit.edu	37	17	9515711	9515711	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:9515711A>C	uc002gly.2	+	8	1009	c.940A>C	c.(940-942)ATT>CTT	p.I314L	WDR16_uc002glz.2_Missense_Mutation_p.I246L|WDR16_uc010coc.2_Missense_Mutation_p.I324L	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	314	WD 4.					cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						AGAATCGCACATTTATCGTGT	0.443													27	28					0	0	0.004656	0	0
WDR16	146845	broad.mit.edu	37	17	9532059	9532059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:9532059G>A	uc002gly.2	+	9	1165	c.1096G>A	c.(1096-1098)GAG>AAG	p.E366K	WDR16_uc002glz.2_Missense_Mutation_p.E298K|WDR16_uc010coc.2_Missense_Mutation_p.E376K	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	366	WD 5.					cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						ATCCAACAGGGAGCTGCTGCG	0.527													14	13					0	0	0.003163	0	0
GLP2R	9340	broad.mit.edu	37	17	9783827	9783827	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:9783827C>T	uc002gmd.1	+	11	1278	c.1278C>T	c.(1276-1278)TCC>TCT	p.S426S		NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	426	Helical; Name=7; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	CACTGAGCTCCTTTCATGTAA	0.403													24	26					0	0	0.003330	0	0
MYH4	4622	broad.mit.edu	37	17	10358358	10358358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:10358358C>T	uc002gmn.2	-	21	2446	c.2335G>A	c.(2335-2337)GAA>AAA	p.E779K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	779	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TCTCGCATTTCCTCTAGAGTT	0.418													24	40					0	0	0.006320	0	0
MYH4	4622	broad.mit.edu	37	17	10362699	10362699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:10362699C>T	uc002gmn.2	-	15	1567	c.1456G>A	c.(1456-1458)GAG>AAG	p.E486K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	486	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGCAGTTTCTCGTTGGTGAAG	0.433													37	37					0	0	0.006230	0	0
MYH1	4619	broad.mit.edu	37	17	10399694	10399694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:10399694C>T	uc002gmo.2	-	34	4923	c.4829G>A	c.(4828-4830)AGG>AAG	p.R1610K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1610	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						ATTCCTGCTCCTGATCTCAGC	0.473													63	52					0	0	0.003610	0	0
MYH1	4619	broad.mit.edu	37	17	10419600	10419600	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:10419600G>A	uc002gmo.2	-	4	358	c.264C>T	c.(262-264)ATC>ATT	p.I88I	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	88	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CCATGTCCTCGATCTTGTCAT	0.478													50	55					0	0	0.003610	0	0
MYOCD	93649	broad.mit.edu	37	17	12626277	12626277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:12626277G>A	uc002gnn.2	+	5	666	c.367G>A	c.(367-369)GAA>AAA	p.E123K	MYOCD_uc002gno.2_Missense_Mutation_p.E123K|MYOCD_uc002gnp.1_Missense_Mutation_p.E27K	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	123	RPEL 3.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		GGAGCTGGTGGAAAAAAACAT	0.473													61	57					0	0	0.003610	0	0
CDRT15P	94158	broad.mit.edu	37	17	13928350	13928350	+	RNA	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:13928350G>A	uc002god.1	+	1		c.536G>A				NR_003261				Homo sapiens CMT1A duplicated region transcript 15 pseudogene (CDRT15P), non-coding RNA.												0						TCCAGCCAAGGACCAGACCAA	0.602													12	10					0	0	0.004007	0	0
ZNF287	57336	broad.mit.edu	37	17	16455518	16455518	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:16455518T>G	uc002gqi.2	-	6	2391	c.1938A>C	c.(1936-1938)AAA>AAC	p.K646N		NM_020653	NP_065704	Q9HBT7	ZN287_HUMAN	zinc finger protein 287	639					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.083)		ATTTAAAGGGTTTTTCTCCAT	0.388													14	14					0	0	0.001855	0	0
MYO15A	51168	broad.mit.edu	37	17	18023148	18023148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:18023148C>T	uc010vxh.1	+	2	1372	c.1034C>T	c.(1033-1035)CCC>CTC	p.P345L		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	345	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					TACCTGGATCCCTATGCGCCG	0.592													25	28					0	0	0.006320	0	0
MYO15A	51168	broad.mit.edu	37	17	18023245	18023245	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:18023245C>T	uc010vxh.1	+	2	1469	c.1131C>T	c.(1129-1131)ACC>ACT	p.T377T		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	377	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					TCCACTACACCGTCCCCTATG	0.597													30	36					0	0	0.002836	0	0
MAP2K3	5606	broad.mit.edu	37	17	21201725	21201725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:21201725G>A	uc002gys.2	+	2	315	c.50G>A	c.(49-51)GGA>GAA	p.G17E	MAP2K3_uc002gyt.2_5'UTR|MAP2K3_uc002gyu.2_5'UTR	NM_145109	NP_659731	P46734	MP2K3_HUMAN	mitogen-activated protein kinase kinase 3	17					activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of transcription, DNA-dependent|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0				COAD - Colon adenocarcinoma(3;0.0131)|Colorectal(15;0.0553)		TCCATTCTAGGAAAATCCAAG	0.577													55	217					0	0	0.003610	0	0
SLC13A2	9058	broad.mit.edu	37	17	26800787	26800787	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:26800787C>T	uc002hbh.2	+	1	124	c.57C>T	c.(55-57)TTC>TTT	p.F19F	SLC13A2_uc010wal.1_Silent_p.F19F|SLC13A2_uc010wam.1_5'UTR|SLC13A2_uc010wan.1_Silent_p.F19F|SLC13A2_uc010wao.1_Silent_p.F19F|SLC13A2_uc002hbi.2_5'UTR	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	19	Helical; (Potential).					integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	TCGTGTTCTTCGTGCCCATTC	0.607													10	21					0	0	0.001368	0	0
SLC13A2	9058	broad.mit.edu	37	17	26823577	26823577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:26823577C>T	uc002hbh.2	+	11	1647	c.1580C>T	c.(1579-1581)TCT>TTT	p.S527F	SLC13A2_uc010wam.1_Missense_Mutation_p.S483F|SLC13A2_uc010wan.1_Missense_Mutation_p.S576F|SLC13A2_uc010wao.1_Missense_Mutation_p.S484F|SLC13A2_uc002hbi.2_Missense_Mutation_p.S456F	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	527	Helical; (Potential).					integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	ATCGTCTTCTCTTTCGGGGAC	0.557													22	42					0	0	0.003954	0	0
SEZ6	124925	broad.mit.edu	37	17	27296881	27296881	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:27296881G>A	uc002hdp.2	-	4	1142	c.948C>T	c.(946-948)TTC>TTT	p.F316F	SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Silent_p.F316F|SEZ6_uc002hdq.1_Silent_p.F191F|SEZ6_uc010crz.1_Silent_p.F316F	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	316	Extracellular (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			CCCGCAGCAGGAAAGACTGGT	0.647													9	24					0	0	0.004482	0	0
CPD	1362	broad.mit.edu	37	17	28770828	28770828	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:28770828G>A	uc002hfb.1	+	11	2397	c.2382G>A	c.(2380-2382)CAG>CAA	p.Q794Q	CPD_uc010wbo.1_Silent_p.Q547Q|CPD_uc010wbp.1_RNA	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	794	Extracellular (Potential).|Carboxypeptidase-like 2.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						AGGTTCATCAGGGCGTCAGAG	0.378													37	81					0	0	0.006230	0	0
CPD	1362	broad.mit.edu	37	17	28783503	28783503	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:28783503A>T	uc002hfb.1	+	17	3472	c.3457A>T	c.(3457-3459)ATG>TTG	p.M1153L	CPD_uc010wbo.1_Missense_Mutation_p.M906L|CPD_uc010wbp.1_Intron	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	1153	Extracellular (Potential).|Carboxypeptidase-like 3.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						AGGAGGAGTAATGCGTGGAGC	0.338													28	32					0	0	0.002096	0	0
ADAP2	55803	broad.mit.edu	37	17	29280360	29280360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:29280360G>A	uc002hfx.2	+	8	1075	c.796G>A	c.(796-798)GGG>AGG	p.G266R	ADAP2_uc010csk.2_Missense_Mutation_p.G272R|ADAP2_uc002hfy.2_Missense_Mutation_p.G266R|ADAP2_uc010csl.2_RNA	NM_018404	NP_060874	Q9NPF8	ADAP2_HUMAN	centaurin-alpha 2 protein	266	PH 2.				heart development|regulation of ARF GTPase activity	mitochondrial envelope|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding, bridging|zinc ion binding	p.?(1)		ovary(1)	1						GGAAAAGACTGGGCCAAAGGT	0.468													9	16					0	0	0.008291	0	0
SPACA3	124912	broad.mit.edu	37	17	31322522	31322522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:31322522G>A	uc002hhs.1	+	2	205	c.130G>A	c.(130-132)GGT>AGT	p.G44S	SPACA3_uc010cte.1_RNA	NM_173847	NP_776246	Q8IXA5	SACA3_HUMAN	sperm acrosome associated 3	44	Cytoplasmic (Potential).				cell wall macromolecule catabolic process|defense response to Gram-positive bacterium|monocyte activation|peptidoglycan catabolic process|positive regulation of macrophage activation|positive regulation of phagocytosis|response to virus	acrosomal membrane|extracellular region|integral to membrane|lysosome	bacterial cell surface binding|lysozyme activity|protein binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.193)			GAGCCAGAGTGGTGGTGGCTC	0.617													35	66					0	0	0.003271	0	0
TMEM132E	124842	broad.mit.edu	37	17	32954075	32954075	+	Silent	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:32954075A>C	uc002hif.2	+	3	1055	c.727A>C	c.(727-729)AGG>CGG	p.R243R		NM_207313	NP_997196	Q6IEE7	T132E_HUMAN	transmembrane protein 132E precursor	243	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(366;0.231)		CTTCACACTCAGGTAGTAGGG	0.617													23	45					0	0	0.005443	0	0
ZNF830	91603	broad.mit.edu	37	17	33289169	33289169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:33289169C>T	uc002hih.3	+	1	621	c.584C>T	c.(583-585)TCC>TTC	p.S195F	CCT6B_uc002hig.2_5'Flank|CCT6B_uc010ctg.2_5'Flank|CCT6B_uc010wcc.1_5'Flank	NM_052857	NP_443089	Q96NB3	ZN830_HUMAN	coiled-coil domain containing 16	195					cell division|mitosis	cytoplasm|nucleus	metal ion binding			breast(1)	1		Ovarian(249;0.17)				CACTCAGTTTCCTCTTCACGG	0.438													14	18					0	0	0.001855	0	0
SLFN11	91607	broad.mit.edu	37	17	33679437	33679437	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:33679437G>A	uc010ctp.2	-	7	3086	c.2644C>T	c.(2644-2646)CTG>TTG	p.L882L	SLFN11_uc010ctq.2_Silent_p.L882L|SLFN11_uc002hjh.3_Silent_p.L882L|SLFN11_uc002hjg.3_Silent_p.L882L|SLFN11_uc010ctr.2_Silent_p.L882L	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	882						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AGACAGATCAGAACATTGGGT	0.463													54	134					0	0	0.003610	0	0
SLFN13	146857	broad.mit.edu	37	17	33767881	33767881	+	Silent	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:33767881A>C	uc002hjk.1	-	4	2757	c.2427T>G	c.(2425-2427)GTT>GTG	p.V809V	SLFN13_uc010wch.1_Silent_p.V809V|SLFN13_uc002hjl.2_Silent_p.V809V|SLFN13_uc010ctt.2_Silent_p.V491V|SLFN13_uc002hjm.2_Silent_p.V478V	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	809						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		CAAGCACAGCAACATCCTTTG	0.443													34	50					0	0	0.005524	0	0
SLFN12L	342615	broad.mit.edu	37	17	33802161	33802161	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:33802161G>A	uc002hjn.2	-	5	2514	c.1635C>T	c.(1633-1635)ATC>ATT	p.I545I		NM_001145027	NP_001138499			schlafen family member 12-like											ovary(1)	1						TCAAGTAGAAGATCTTTGTCA	0.383													14	29					0	0	0.001855	0	0
TAF15	8148	broad.mit.edu	37	17	34144726	34144726	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:34144726G>T	uc002hkd.2	+	2	100	c.14G>T	c.(13-15)GGA>GTA	p.G5V	TAF15_uc010ctw.1_RNA|TAF15_uc002hkc.2_Missense_Mutation_p.G5V	NM_139215	NP_631961	Q92804	RBP56_HUMAN	TBP-associated factor 15 isoform 1	5	Gln/Gly/Ser/Tyr-rich.				positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding|zinc ion binding		TAF15/NR4A3(33)	bone(33)|lung(1)|skin(1)	35		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0193)		CTAGATTCTGGAAGTTACGGT	0.333			T	TEC|CHN1|ZNF384	extraskeletal myxoid chondrosarcomas|ALL								20	41					1.56452e-12	1.75668e-12	0.007413	1	0
LYZL6	57151	broad.mit.edu	37	17	34263826	34263826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:34263826G>A	uc002hkj.1	-	3	460	c.310C>T	c.(310-312)CCC>TCC	p.P104S	LYZL6_uc002hkk.1_Missense_Mutation_p.P104S	NM_020426	NP_065159	O75951	LYZL6_HUMAN	lysozyme-like 6 precursor	104					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AGAAGGTTGGGATTCAGCAGA	0.572													36	65					0	0	0.008740	0	0
TADA2A	6871	broad.mit.edu	37	17	35830620	35830620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:35830620C>T	uc002hnt.2	+	13	1169	c.1012C>T	c.(1012-1014)CGC>TGC	p.R338C	TADA2A_uc002hnv.2_Missense_Mutation_p.R338C|TADA2A_uc002hnw.2_Missense_Mutation_p.R237C|TADA2A_uc010cvb.2_Missense_Mutation_p.R134C	NM_001488	NP_001479	O75478	TAD2A_HUMAN	transcriptional adaptor 2A isoform a	338					histone H3 acetylation|transcription from RNA polymerase II promoter	chromosome|PCAF complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity|zinc ion binding			breast(3)|skin(1)	4						GCAGTGGCTCCGCCGGCAAGC	0.512													40	86					0	0	0.008740	0	0
LASP1	3927	broad.mit.edu	37	17	37046721	37046722	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:37046721_37046722CC>TT	uc002hra.2	+	3	544_545	c.213_214CC>TT	c.(211-216)AACCTT>AATTTT	p.L72F	LASP1_uc010wdy.1_Missense_Mutation_p.L72F|LASP1_uc010cvq.2_5'UTR|LASP1_uc010wdz.1_Intron	NM_006148	NP_006139	Q14847	LASP1_HUMAN	LIM and SH3 protein 1	72	Nebulin 1.					cortical actin cytoskeleton	ion transmembrane transporter activity|SH3/SH2 adaptor activity|zinc ion binding			lung(1)	1						CCCCGGAAAACCTTCGCCTCAA	0.624			T	MLL	AML								19	68					0	0	0.004672	0	0
PLXDC1	57125	broad.mit.edu	37	17	37265218	37265218	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:37265218G>A	uc002hrg.2	-	4	620	c.408C>T	c.(406-408)GTC>GTT	p.V136V	PLXDC1_uc002hrh.2_RNA|PLXDC1_uc002hri.2_RNA|PLXDC1_uc002hrj.1_RNA|PLXDC1_uc002hrk.1_RNA	NM_020405	NP_065138	Q8IUK5	PXDC1_HUMAN	plexin domain containing 1 precursor	136	Extracellular (Potential).				angiogenesis	cytoplasm|extracellular region|integral to membrane|tight junction				ovary(1)|kidney(1)|skin(1)	3						CAAAGGACAAGACCACTCTCT	0.607													12	30					0	0	0.000978	0	0
GSDMB	55876	broad.mit.edu	37	17	38062490	38062490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:38062490C>T	uc010cwj.2	-	7	767	c.762G>A	c.(760-762)ATG>ATA	p.M254I	GSDMB_uc010cwi.2_Missense_Mutation_p.M1I|GSDMB_uc010cwk.2_RNA|GSDMB_uc010cwl.2_RNA|GSDMB_uc010cwm.2_RNA|GSDMB_uc002htg.2_Missense_Mutation_p.M232I|GSDMB_uc002hth.2_Missense_Mutation_p.M241I|GSDMB_uc010wem.1_Missense_Mutation_p.M245I	NM_001042471	NP_001035936	Q8TAX9	GSDMB_HUMAN	gasdermin B isoform 1	249	Potential.					cytoplasm				breast(1)|pancreas(1)	2						ACTTCTCCTTCATGTTTCTGG	0.498													20	56					0	0	0.002780	0	0
GSDMA	284110	broad.mit.edu	37	17	38122529	38122529	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:38122529G>A	uc002htl.1	+	3	349	c.231G>A	c.(229-231)GGG>GGA	p.G77G	GSDMA_uc002htm.1_Silent_p.G77G	NM_178171	NP_835465	Q96QA5	GSDMA_HUMAN	gasdermin 1	77					apoptosis|induction of apoptosis	perinuclear region of cytoplasm					0						CAGACACTGGGAATTTTGGCT	0.398													26	42					0	0	0.005443	0	0
SMARCE1	6605	broad.mit.edu	37	17	38792324	38792324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:38792324G>A	uc002hux.2	-	7	524	c.400C>T	c.(400-402)CAT>TAT	p.H134Y	SMARCE1_uc010wff.1_Missense_Mutation_p.H99Y|SMARCE1_uc010wfg.1_Missense_Mutation_p.H64Y|SMARCE1_uc002huy.2_Missense_Mutation_p.H99Y|SMARCE1_uc010wfh.1_Missense_Mutation_p.H64Y|SMARCE1_uc010wfi.1_Missense_Mutation_p.H116Y|SMARCE1_uc002huz.1_Missense_Mutation_p.H99Y|SMARCE1_uc010wfj.1_Missense_Mutation_p.H116Y	NM_003079	NP_003070	Q969G3	SMCE1_HUMAN	SWI/SNF-related matrix-associated	134	HMG box.				chromatin modification|negative regulation of transcription, DNA-dependent|nervous system development|nucleosome disassembly|regulation of transcription from RNA polymerase II promoter	nBAF complex|npBAF complex|nuclear chromosome|SWI/SNF complex|transcriptional repressor complex	chromatin binding|DNA binding|N-acetyltransferase activity|protein binding|protein N-terminus binding|transcription coactivator activity				0		Breast(137;0.000812)				GGGGAATTATGATAGGCCTTC	0.308													20	69					0	0	0.003330	0	0
KRT24	192666	broad.mit.edu	37	17	38855755	38855755	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:38855755G>A	uc002hvd.2	-	6	1359	c.1302C>T	c.(1300-1302)ATC>ATT	p.I434I		NM_019016	NP_061889	Q2M2I5	K1C24_HUMAN	keratin 24	434	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.00526)				GGCGTGTCTTGATGTCCAGCA	0.507													51	113					0	0	0.003610	0	0
KRT10	3858	broad.mit.edu	37	17	38976631	38976631	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:38976631C>T	uc002hvi.2	-	4	938	c.912G>A	c.(910-912)GTG>GTA	p.V304V	KRT10_uc010cxd.2_5'Flank|TMEM99_uc002hvj.1_Intron	NM_000421	NP_000412	P13645	K1C10_HUMAN	keratin 10	304	Linker 12.|Rod.|Gly-rich.				epidermis development		protein binding|structural constituent of epidermis				0		Breast(137;0.000301)				CATTCATTTCCACATTCACAT	0.418													36	103					0	0	0.006999	0	0
KCNH4	23415	broad.mit.edu	37	17	40315269	40315269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:40315269G>A	uc002hzb.2	-	14	2894	c.2561C>T	c.(2560-2562)CCC>CTC	p.P854L		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	854	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		CTGGGAGCGGGGCCTTGGCAG	0.537													22	42					0	0	0.003330	0	0
DHX8	1659	broad.mit.edu	37	17	41571178	41571178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:41571178C>T	uc002idu.1	+	8	1209	c.1136C>T	c.(1135-1137)CCT>CTT	p.P379L	DHX8_uc010wif.1_Missense_Mutation_p.P288L|DHX8_uc010wig.1_Missense_Mutation_p.P379L	NM_004941	NP_004932	Q14562	DHX8_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 8	379						catalytic step 2 spliceosome	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|pancreas(1)	4		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.08)		GTCAGTGCTCCTGAAGTAGAG	0.517													42	93					0	0	0.002852	0	0
IMP5	162540	broad.mit.edu	37	17	43922587	43922587	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:43922587G>A	uc010wka.1	+	1	315	c.315G>A	c.(313-315)ACG>ACA	p.T105T	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	105	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		GCTTCCACACGAAAGGCTGGC	0.667													25	37					0	0	0.005443	0	0
MAPT	4137	broad.mit.edu	37	17	44060587	44060587	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:44060587G>A	uc002ijr.3	+	6	737	c.417G>A	c.(415-417)GAG>GAA	p.E139E	MAPT_uc010dau.2_Silent_p.E139E|MAPT_uc002ijs.3_Intron|MAPT_uc002ijx.3_Intron|MAPT_uc002ijt.3_Intron|MAPT_uc002iju.3_Intron|MAPT_uc002ijv.3_Intron	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	139					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				TCCTCCGAGAGCCAGGCCCCC	0.667													6	7					0	0	0.003080	0	0
STH	246744	broad.mit.edu	37	17	44076811	44076811	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:44076811T>G	uc002ijy.2	+	1	196	c.166T>G	c.(166-168)TCC>GCC	p.S56A	MAPT_uc010dau.2_Intron|MAPT_uc002ijr.3_Intron|MAPT_uc002ijs.3_Intron|MAPT_uc002ijx.3_Intron|MAPT_uc002ijt.3_Intron|MAPT_uc002iju.3_Intron|MAPT_uc002ijv.3_Intron	NM_001007532	NP_001007533	Q8IWL8	STH_HUMAN	saitohin	56						cytoplasm|nucleus					0						GGAAGTAGCTTCCCTGTTGAC	0.483													15	40					0	0	0.002450	0	0
STH	246744	broad.mit.edu	37	17	44076813	44076813	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:44076813C>T	uc002ijy.2	+	1	198	c.168C>T	c.(166-168)TCC>TCT	p.S56S	MAPT_uc010dau.2_Intron|MAPT_uc002ijr.3_Intron|MAPT_uc002ijs.3_Intron|MAPT_uc002ijx.3_Intron|MAPT_uc002ijt.3_Intron|MAPT_uc002iju.3_Intron|MAPT_uc002ijv.3_Intron	NM_001007532	NP_001007533	Q8IWL8	STH_HUMAN	saitohin	56						cytoplasm|nucleus					0						AAGTAGCTTCCCTGTTGACCC	0.493													15	40					0	0	0.002450	0	0
NGFR	4804	broad.mit.edu	37	17	47579543	47579543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:47579543C>T	uc002ioz.3	+	2	310	c.185C>T	c.(184-186)ACC>ATC	p.T62I		NM_002507	NP_002498	P08138	TNR16_HUMAN	nerve growth factor receptor precursor	62	TNFR-Cys 1.|Extracellular (Potential).				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|membrane protein intracellular domain proteolysis|negative regulation of axonogenesis|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis	cell surface|cytosol|endosome|extracellular region|integral to plasma membrane|nucleoplasm				ovary(1)|lung(1)	2	all_cancers(4;1.45e-13)|Breast(4;6.34e-28)|all_epithelial(4;4.95e-17)					GCCAACCAGACCGTGTGTGAG	0.463													23	42					0	0	0.002780	0	0
SPOP	8405	broad.mit.edu	37	17	47685283	47685283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:47685283G>A	uc010dbk.2	-	8	1299	c.667C>T	c.(667-669)CCG>TCG	p.P223S	SPOP_uc002ipb.2_Missense_Mutation_p.P223S|SPOP_uc002ipc.2_Missense_Mutation_p.P223S|SPOP_uc002ipd.2_Missense_Mutation_p.P223S|SPOP_uc002ipe.2_Missense_Mutation_p.P223S|SPOP_uc002ipf.2_Missense_Mutation_p.P223S|SPOP_uc002ipg.2_Missense_Mutation_p.P223S	NM_003563	NP_003554	O43791	SPOP_HUMAN	speckle-type POZ protein	223	BTB.				mRNA processing	nucleus	protein binding			prostate(2)|ovary(2)|lung(2)	6						CTAAAAACCGGAGAACGAGCT	0.408										Prostate(2;0.17)			59	117					0	0	0.003610	0	0
XYLT2	64132	broad.mit.edu	37	17	48434518	48434518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:48434518G>A	uc002iqo.2	+	9	1955	c.1846G>A	c.(1846-1848)GGG>AGG	p.G616R	XYLT2_uc010dbo.2_Intron	NM_022167	NP_071450	Q9H1B5	XYLT2_HUMAN	xylosyltransferase II	616	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			pancreas(1)	1	Breast(11;7.18e-19)					CTCAGCCCAGGGGCCGGCAGA	0.647													13	20					0	0	0.002450	0	0
ABCC3	8714	broad.mit.edu	37	17	48745836	48745836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:48745836G>A	uc002isl.2	+	14	1908	c.1828G>A	c.(1828-1830)GAA>AAA	p.E610K		NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	610	Cytoplasmic (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GAGCCAAGAGGAACTTGACCC	0.567													31	59					0	0	0.002096	0	0
ABCC3	8714	broad.mit.edu	37	17	48746224	48746224	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:48746224C>T	uc002isl.2	+	15	1961	c.1881C>T	c.(1879-1881)ATC>ATT	p.I627I		NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	627	Cytoplasmic (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GCTATGCCATCACCATACACA	0.542													5	17					0	0	0.001168	0	0
CA10	56934	broad.mit.edu	37	17	49731087	49731087	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:49731087A>C	uc002itw.3	-	5	1462	c.476T>G	c.(475-477)ATC>AGC	p.I159S	CA10_uc002itu.3_Missense_Mutation_p.I88S|CA10_uc002itv.3_Missense_Mutation_p.I165S|CA10_uc002itx.3_Missense_Mutation_p.I159S|CA10_uc002ity.3_Missense_Mutation_p.I159S|CA10_uc002itz.2_Missense_Mutation_p.I159S	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	159					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			GTTATAGTGGATGAGCTGCAC	0.408													11	33					0	0	0.000978	0	0
BZRAP1	9256	broad.mit.edu	37	17	56384997	56384997	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:56384997G>A	uc002ivx.3	-	24	5829	c.4958C>T	c.(4957-4959)CCC>CTC	p.P1653L	BZRAP1_uc002ivv.2_5'Flank|BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Missense_Mutation_p.P1593L|BZRAP1_uc010wnt.1_Missense_Mutation_p.P1653L	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1653	SH3 2.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CTCTCGGAAGGGAAGCTCTTC	0.547													16	25					0	0	0.004007	0	0
RNF43	54894	broad.mit.edu	37	17	56435450	56435450	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:56435450G>A	uc002iwf.2	-	8	3643	c.1687C>T	c.(1687-1689)CAG>TAG	p.Q563*	RNF43_uc010wnv.1_Nonsense_Mutation_p.Q522*|RNF43_uc002iwh.3_Nonsense_Mutation_p.Q563*|RNF43_uc002iwg.3_Nonsense_Mutation_p.Q563*|RNF43_uc010dcw.2_Nonsense_Mutation_p.Q436*	NM_017763	NP_060233	Q68DV7	RNF43_HUMAN	ring finger protein 43 precursor	563	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear envelope	ligase activity|protein binding|zinc ion binding			ovary(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCATGCCACTGGAACCGCTTT	0.622													59	117					0	0	0.003610	0	0
HSF5	124535	broad.mit.edu	37	17	56557419	56557419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:56557419G>A	uc002iwi.1	-	2	884	c.760C>T	c.(760-762)CCG>TCG	p.P254S		NM_001080439	NP_001073908	Q4G112	HSF5_HUMAN	heat shock transcription factor family member 5	254						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					ACAGGAAACGGAACCCCTTTA	0.473													52	116					0	0	0.003610	0	0
TRIM37	4591	broad.mit.edu	37	17	57093067	57093067	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:57093067T>C	uc002iwy.3	-	21	2924	c.2480A>G	c.(2479-2481)GAC>GGC	p.D827G	TRIM37_uc002iwz.3_Missense_Mutation_p.D827G|TRIM37_uc002ixa.3_Missense_Mutation_p.D705G|TRIM37_uc010woc.1_Missense_Mutation_p.D793G	NM_001005207	NP_001005207	O94972	TRI37_HUMAN	tripartite motif-containing 37 protein	827						perinuclear region of cytoplasm|peroxisome	ligase activity|protein binding|zinc ion binding			lung(2)|pancreas(2)|ovary(1)|skin(1)|breast(1)	7	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					ACACTGCCGGTCTTCAGTTTT	0.502									Mulibrey_Nanism				51	73					0	0	0.003610	0	0
C17orf71	55181	broad.mit.edu	37	17	57290928	57290928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:57290928C>T	uc002ixi.2	+	3	2786	c.2744C>T	c.(2743-2745)CCT>CTT	p.P915L		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	915					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					GTTGTGGTTCCTGATGCTCCT	0.393													45	110					0	0	0.003610	0	0
CLTC	1213	broad.mit.edu	37	17	57754377	57754377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:57754377C>T	uc002ixq.1	+	17	3067	c.2624C>T	c.(2623-2625)ACT>ATT	p.T875I	CLTC_uc002ixp.2_Missense_Mutation_p.T875I|CLTC_uc002ixr.1_Missense_Mutation_p.T879I	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	875	Heavy chain arm.|Proximal segment.				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					GAGCCTGCTACTCACAATGCC	0.433			T	ALK|TFE3	ALCL|renal 								16	41					0	0	0.004990	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60344541	60344541	+	RNA	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:60344541C>T	uc010woz.1	-	12		c.939G>A			uc010wpb.1_5'Flank	NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						AACGCCTGTTCGCCTTCTACC	0.597													93	189					0	0	0.003610	0	0
KCNH6	81033	broad.mit.edu	37	17	61613048	61613048	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:61613048C>T	uc002jay.2	+	6	1200	c.1120C>T	c.(1120-1122)CTA>TTA	p.L374L	KCNH6_uc002jax.1_Silent_p.L374L|KCNH6_uc010wpl.1_Silent_p.L251L|KCNH6_uc010wpm.1_Silent_p.L374L|KCNH6_uc002jaz.1_Silent_p.L374L	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	374	Helical; Voltage-sensor; Name=Segment S4; (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	CCTGATTGGGCTATTGAAGAC	0.597													21	30					0	0	0.002780	0	0
BPTF	2186	broad.mit.edu	37	17	65955759	65955759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:65955759C>T	uc002jgf.2	+	24	8090	c.8029C>T	c.(8029-8031)CCT>TCT	p.P2677S	BPTF_uc002jge.2_Missense_Mutation_p.P2660S|BPTF_uc002jgg.2_Missense_Mutation_p.P334S|BPTF_uc002jgh.2_Missense_Mutation_p.P136S	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	2803	Pro-rich.			AP -> VL (in Ref. 1; BAA89208).	brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			GACAccagctcctccagcccc	0.473													15	21					0	0	0.002450	0	0
TMEM104	54868	broad.mit.edu	37	17	72832438	72832438	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:72832438A>G	uc002jls.3	+	10	1265	c.1103A>G	c.(1102-1104)AAC>AGC	p.N368S	TMEM104_uc010wrf.1_Intron|TMEM104_uc010wrg.1_Intron|TMEM104_uc010dfx.2_Missense_Mutation_p.N368S	NM_017728	NP_060198	Q8NE00	TM104_HUMAN	transmembrane protein 104	368	Helical; (Potential).					integral to membrane					0	all_lung(278;0.23)					ATCAGCACCAACTTCCCCATC	0.622													52	119					0	0	0.003610	0	0
EVPL	2125	broad.mit.edu	37	17	74005097	74005097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:74005097C>T	uc002jqi.2	-	22	4417	c.4189G>A	c.(4189-4191)GAG>AAG	p.E1397K	EVPL_uc010wss.1_Missense_Mutation_p.E1419K|EVPL_uc010wst.1_Missense_Mutation_p.E867K	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1397	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CCCACCTCCTCATCCAGGCTC	0.697													31	69					0	0	0.002836	0	0
SEPT9	10801	broad.mit.edu	37	17	75398431	75398432	+	Nonsense_Mutation	DNP	GG	TA	TA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:75398431_75398432GG>TA	uc002jts.3	+	3	493_494	c.367_368GG>TA	c.(367-369)GGG>TAG	p.G123*	SEPT9_uc010wtk.1_Nonsense_Mutation_p.G104*|SEPT9_uc002jtt.3_5'UTR|SEPT9_uc002jtu.3_Nonsense_Mutation_p.G105*|SEPT9_uc002jtv.2_Nonsense_Mutation_p.G116*|SEPT9_uc002jtw.2_5'UTR|SEPT9_uc002jtx.1_5'UTR|SEPT9_uc010wtl.1_5'Flank	NM_001113491	NP_001106963	Q9UHD8	SEPT9_HUMAN	septin 9 isoform a	123					cell cycle|cell division|protein heterooligomerization	microtubule|perinuclear region of cytoplasm|stress fiber	GTP binding|GTPase activity|protein binding|protein binding			breast(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(99;0.153)			GGAGAACGCCGGGGCCATCGGC	0.683													9	26					0	0	0.004672	0	0
TSPAN10	83882	broad.mit.edu	37	17	79609470	79609470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:79609470C>T	uc010die.2	+	1	122	c.32C>T	c.(31-33)TCC>TTC	p.S11F	TSPAN10_uc002kaw.1_Missense_Mutation_p.S11F|TSPAN10_uc010did.1_RNA	NM_031945	NP_114151	Q9H1Z9	TSN10_HUMAN	tetraspanin 10	11						integral to membrane				ovary(1)	1	all_neural(118;0.0878)|all_lung(278;0.175)|Lung NSC(278;0.192)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			CCCTTACTGTCCCAGGTGAGC	0.642													33	80					0	0	0.007835	0	0
PDE6G	5148	broad.mit.edu	37	17	79620265	79620265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:79620265C>T	uc002kay.3	-	2	215	c.71G>A	c.(70-72)AGG>AAG	p.R24K	PDE6G_uc002kaz.3_Intron	NM_002602	NP_002593	P18545	CNRG_HUMAN	phosphodiesterase 6G	24	Arg/Lys-rich (basic).				platelet activation|visual perception	cytosol	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|enzyme inhibitor activity				0	all_neural(118;0.0878)|all_lung(278;0.175)|Lung NSC(278;0.192)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			GGGCCCTTTCCTGGGGGTGAC	0.627													45	91					0	0	0.003610	0	0
ZNF750	79755	broad.mit.edu	37	17	80788365	80788365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:80788365C>T	uc002kga.2	-	3	2136	c.1825G>A	c.(1825-1827)GCC>ACC	p.A609T	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	609						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GTGGGTGGGGCCCCGTCACCG	0.677													25	28					0	0	0.005443	0	0
CETN1	1068	broad.mit.edu	37	18	580612	580612	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:580612G>A	uc002kko.1	+	1	246	c.204G>A	c.(202-204)GAG>GAA	p.E68E		NM_004066	NP_004057	Q12798	CETN1_HUMAN	centrin 1	68	EF-hand 2.				cell division|mitosis	spindle pole	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding			upper_aerodigestive_tract(1)|ovary(1)	2						GGAAGGAAGAGATGAAGAAAA	0.552													13	22					0	0	0.001368	0	0
DSC3	1825	broad.mit.edu	37	18	28584168	28584168	+	Missense_Mutation	SNP	C	T	T	rs138482790		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:28584168C>T	uc002kwj.3	-	13	2208	c.2053G>A	c.(2053-2055)GGA>AGA	p.G685R	DSC3_uc002kwi.3_Missense_Mutation_p.G685R	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	685	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			AGTATTACTCCTGTACTCCTT	0.373													29	54					0	0	0.002836	0	0
DSC2	1824	broad.mit.edu	37	18	28662218	28662218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:28662218G>A	uc002kwl.3	-	9	1703	c.1249C>T	c.(1249-1251)CTT>TTT	p.L417F	DSC2_uc002kwk.3_Missense_Mutation_p.L417F	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	417	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			ACTACACAAAGAACTCCTTCA	0.289													25	71					0	0	0.003954	0	0
DSC2	1824	broad.mit.edu	37	18	28669455	28669455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:28669455C>T	uc002kwl.3	-	5	1031	c.577G>A	c.(577-579)GGA>AGA	p.G193R	DSC2_uc002kwk.3_Missense_Mutation_p.G193R	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	193	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			TACAAGTTTCCAGTGTCTCTC	0.398													20	46					0	0	0.005443	0	0
DSC1	1823	broad.mit.edu	37	18	28711664	28711664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:28711664C>T	uc002kwn.2	-	15	2642	c.2380G>A	c.(2380-2382)GGA>AGA	p.G794R	DSC1_uc002kwm.2_Missense_Mutation_p.G794R|uc002kwo.1_RNA	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	794	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TGTCCACCTCCTTTGTTGGAA	0.512													61	109					0	0	0.003610	0	0
DSC1	1823	broad.mit.edu	37	18	28720107	28720107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:28720107G>A	uc002kwn.2	-	10	1680	c.1418C>T	c.(1417-1419)CCT>CTT	p.P473L	DSC1_uc002kwm.2_Missense_Mutation_p.P473L	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	473	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TTTCACTGGAGGGTGGCATTC	0.473													23	68					0	0	0.003954	0	0
DSG3	1830	broad.mit.edu	37	18	29055672	29055672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:29055672G>A	uc002kws.2	+	16	2558	c.2449G>A	c.(2449-2451)GAT>AAT	p.D817N	DSG3_uc002kwt.2_Missense_Mutation_p.D99N	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	817	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GTTGATCTATGATAATGAAGG	0.458													39	46					0	0	0.002522	0	0
MCART2	147407	broad.mit.edu	37	18	29340393	29340393	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:29340393G>A	uc002kxa.2	-	1	451	c.232C>T	c.(232-234)CGA>TGA	p.R78*		NM_001034172	NP_001029344	Q3SY17	MCAR2_HUMAN	mitochondrial carrier triple repeat 2	78	Solcar 1.				transport	integral to membrane|mitochondrial inner membrane				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(10;0.0539)			TACAAATTTCGAAATCCATCC	0.463													33	75					0	0	0.002836	0	0
ASXL3	80816	broad.mit.edu	37	18	31320358	31320358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:31320358C>T	uc010dmg.1	+	11	3045	c.2990C>T	c.(2989-2991)CCT>CTT	p.P997L	ASXL3_uc002kxq.2_Missense_Mutation_p.P704L	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	997					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AGCAGCCCACCTGAGAAAGAA	0.438													9	13					0	0	0.006214	0	0
SETBP1	26040	broad.mit.edu	37	18	42531222	42531222	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:42531222G>A	uc010dni.2	+	4	2213	c.1917G>A	c.(1915-1917)GAG>GAA	p.E639E		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	639						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		TGCCGGGAGAGGACAAACCCA	0.488									Schinzel-Giedion_syndrome				20	57					0	0	0.001523	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45566434	45566434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:45566434G>A	uc002lda.2	-	1	1061	c.1045C>T	c.(1045-1047)CCC>TCC	p.P349S	ZBTB7C_uc002ldb.2_Missense_Mutation_p.P349S|ZBTB7C_uc010dnu.2_Missense_Mutation_p.P358S|ZBTB7C_uc010dnv.2_Missense_Mutation_p.P371S|ZBTB7C_uc010dnw.2_Missense_Mutation_p.P349S|ZBTB7C_uc010dnx.1_Missense_Mutation_p.P349S|ZBTB7C_uc010dny.1_Missense_Mutation_p.P349S|ZBTB7C_uc010dnz.1_Missense_Mutation_p.P371S|ZBTB7C_uc010dob.1_Missense_Mutation_p.P349S|ZBTB7C_uc010doc.1_Missense_Mutation_p.P358S|ZBTB7C_uc010dod.1_Missense_Mutation_p.P371S|ZBTB7C_uc010doe.1_Missense_Mutation_p.P349S|ZBTB7C_uc010dof.1_Missense_Mutation_p.P349S|ZBTB7C_uc010dog.1_Missense_Mutation_p.P349S|ZBTB7C_uc010doh.1_Missense_Mutation_p.P358S|ZBTB7C_uc010doi.1_Missense_Mutation_p.P349S|ZBTB7C_uc010doj.1_Missense_Mutation_p.P358S|ZBTB7C_uc010dok.1_Missense_Mutation_p.P398S|ZBTB7C_uc010dol.1_Missense_Mutation_p.P358S|ZBTB7C_uc010doa.1_Missense_Mutation_p.P371S|ZBTB7C_uc010don.1_Missense_Mutation_p.P357S|ZBTB7C_uc010doo.1_Missense_Mutation_p.P349S|ZBTB7C_uc010dop.1_Missense_Mutation_p.P349S|ZBTB7C_uc010doq.1_Missense_Mutation_p.P358S|ZBTB7C_uc010dor.1_Missense_Mutation_p.P371S|ZBTB7C_uc010dos.1_Missense_Mutation_p.P349S|ZBTB7C_uc010dot.1_Missense_Mutation_p.P349S|ZBTB7C_uc010dou.1_Missense_Mutation_p.P358S|ZBTB7C_uc010dom.1_Missense_Mutation_p.P358S	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	349						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						AGGGGCCAGGGTGGGAAGAGG	0.647													32	85					0	0	0.003271	0	0
DCC	1630	broad.mit.edu	37	18	50432669	50432669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:50432669G>A	uc002lfe.1	+	3	1255	c.668G>A	c.(667-669)GGA>GAA	p.G223E	DCC_uc010xdr.1_Missense_Mutation_p.G71E	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	223	Extracellular (Potential).|Ig-like C2-type 2.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane		p.G223R(1)		skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TCAAGAACAGGAAATGAAGCA	0.428													13	30					0	0	0.003163	0	0
RAB27B	5874	broad.mit.edu	37	18	52555288	52555288	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:52555288G>A	uc002lfr.2	+	5	517	c.406G>A	c.(406-408)GAC>AAC	p.D136N		NM_004163	NP_004154	O00194	RB27B_HUMAN	RAB27B, member RAS oncogene family	136	GTP.				protein transport|small GTPase mediated signal transduction	Golgi apparatus|plasma membrane	GTP binding|GTPase activity				0				Colorectal(16;0.0273)|READ - Rectum adenocarcinoma(59;0.219)		CAACAAGGCAGACCTACCAGA	0.433													41	93					0	0	0.007835	0	0
CCDC68	80323	broad.mit.edu	37	18	52596091	52596091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:52596091C>T	uc002lfs.2	-	8	795	c.623G>A	c.(622-624)AGA>AAA	p.R208K	CCDC68_uc002lft.2_Missense_Mutation_p.R208K	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	208	Potential.									skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		AGACAGTTTTCTTTCTAGTAG	0.363													6	24					0	0	0.001984	0	0
CCDC68	80323	broad.mit.edu	37	18	52604176	52604176	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:52604176C>T	uc002lfs.2	-	6	531	c.359G>A	c.(358-360)AGA>AAA	p.R120K	CCDC68_uc002lft.2_Missense_Mutation_p.R120K	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	120	Potential.									skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		TCCTGCTTCTCTGGAGGCTTG	0.423													27	46					0	0	0.002836	0	0
Unknown	0	broad.mit.edu	37	18	54814973	54814973	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:54814973C>T	uc002lgm.2	+	1	638	c.430C>T	c.(430-432)CTG>TTG	p.L144L						RecName: Full=Protein FAM44C;																		TCATGAATTCCTGGTGGCCCA	0.507													9	17					0	0	0.006214	0	0
ALPK2	115701	broad.mit.edu	37	18	56205126	56205126	+	Missense_Mutation	SNP	G	A	A	rs115584025	byFrequency	TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:56205126G>A	uc002lhj.3	-	5	2507	c.2293C>T	c.(2293-2295)CGT>TGT	p.R765C	ALPK2_uc002lhk.1_Missense_Mutation_p.R96C	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	765							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						AAGTCAGCACGAGCATCCTTG	0.517													41	94					0	0	0.006230	0	0
ALPK2	115701	broad.mit.edu	37	18	56205350	56205350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:56205350G>A	uc002lhj.3	-	5	2283	c.2069C>T	c.(2068-2070)TCC>TTC	p.S690F	ALPK2_uc002lhk.1_Missense_Mutation_p.S21F	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	690							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						GTTTGAGAAGGAAATTGTTGT	0.493													11	27					0	0	0.008291	0	0
SERPINB4	6318	broad.mit.edu	37	18	61324641	61324641	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:61324641T>A	uc002ljg.2	-	5	501	c.475A>T	c.(475-477)ATT>TTT	p.I159F	SERPINB3_uc002lji.2_Missense_Mutation_p.I159F|SERPINB3_uc010dqa.2_Missense_Mutation_p.I159F			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	159					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						AGGTTTTTAATTTTTTCTGCA	0.348													29	55					0	0	0.001786	0	0
SERPINB4	6318	broad.mit.edu	37	18	61326699	61326699	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:61326699G>A	uc002ljg.2	-	3	311	c.285C>T	c.(283-285)TCC>TCT	p.S95S	SERPINB3_uc002lji.2_Silent_p.S95S|SERPINB3_uc010dqa.2_Silent_p.S95S|SERPINB3_uc010dqb.2_Silent_p.S95S			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	95					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						ATGCATCAGTGGATTTGTTGA	0.383													42	106					0	0	0.008740	0	0
SERPINB11	89778	broad.mit.edu	37	18	61390289	61390289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:61390289G>A	uc002ljk.3	+	9	897	c.835G>A	c.(835-837)GAA>AAA	p.E279K	SERPINB11_uc010xes.1_Missense_Mutation_p.E104K|SERPINB11_uc010dqd.2_Missense_Mutation_p.E165K|SERPINB11_uc002ljj.3_Missense_Mutation_p.E165K|SERPINB11_uc010dqe.2_Missense_Mutation_p.E78K|SERPINB11_uc010dqf.2_Missense_Mutation_p.E77K	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	279					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				TAACATGATGGAAAGAGAAGT	0.418													3	10					0	0	0.000248	0	0
NETO1	81832	broad.mit.edu	37	18	70417358	70417358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:70417358C>T	uc002lkw.2	-	9	1764	c.1480G>A	c.(1480-1482)GAA>AAA	p.E494K	NETO1_uc002lkx.1_Missense_Mutation_p.E493K|NETO1_uc002lky.1_Missense_Mutation_p.E494K	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	494	Cytoplasmic (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		TCTTCGATTTCATCTATGTCA	0.473													11	42					0	0	0.008291	0	0
ZNF236	7776	broad.mit.edu	37	18	74649199	74649199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr18:74649199C>T	uc002lmi.2	+	26	4874	c.4676C>T	c.(4675-4677)TCG>TTG	p.S1559L	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	1559					cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		ATGTCCTCGTCGGGCGTGGGA	0.547													37	42					0	0	0.005524	0	0
ARID3A	1820	broad.mit.edu	37	19	964880	964880	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:964880G>A	uc002lql.2	+	6	1288	c.998G>A	c.(997-999)AGT>AAT	p.S333N		NM_005224	NP_005215	Q99856	ARI3A_HUMAN	AT rich interactive domain 3A (BRIGHT- like)	333						cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGGGCCTCAGTAACCCCAAT	0.632													24	32					0	0	0.005443	0	0
DOT1L	84444	broad.mit.edu	37	19	2222480	2222480	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:2222480C>T	uc002lvb.3	+	24	3348	c.3312C>T	c.(3310-3312)TCC>TCT	p.S1104S	DOT1L_uc002lvc.1_Silent_p.S398S|DOT1L_uc002lve.1_3'UTR	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	1104						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGGCGTGTCCCCCAAGCGCC	0.701													9	26					0	0	0.004482	0	0
ZNF556	80032	broad.mit.edu	37	19	2877909	2877909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:2877909G>A	uc002lwp.1	+	4	1040	c.953G>A	c.(952-954)GGA>GAA	p.G318E	ZNF556_uc002lwq.2_Missense_Mutation_p.G317E	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	318	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TATAAGTGTGGAAAATGCGGG	0.507													27	41					0	0	0.007291	0	0
ZNF556	80032	broad.mit.edu	37	19	2878238	2878238	+	Missense_Mutation	SNP	G	A	A	rs35494032	byFrequency	TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:2878238G>A	uc002lwp.1	+	4	1369	c.1282G>A	c.(1282-1284)GAA>AAA	p.E428K	ZNF556_uc002lwq.2_Missense_Mutation_p.E427K	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	428	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGTAAATGCGAAAAATGTGG	0.448													42	120					0	0	0.003214	0	0
GNA15	2769	broad.mit.edu	37	19	3151735	3151735	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:3151735G>A	uc002lxf.2	+	4	774	c.516G>A	c.(514-516)GAG>GAA	p.E172E		NM_002068	NP_002059	P30679	GNA15_HUMAN	guanine nucleotide binding protein (G protein),	172					activation of phospholipase C activity by dopamine receptor signaling pathway|activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			skin(2)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.04e-05)|OV - Ovarian serous cystadenocarcinoma(105;5.08e-113)|Epithelial(107;6.19e-111)|all cancers(105;6.19e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00145)|STAD - Stomach adenocarcinoma(1328;0.184)		GCATCACCGAGGAGGGCTACG	0.627													34	97					0	0	0.005524	0	0
ITGB1BP3	27231	broad.mit.edu	37	19	3941087	3941087	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:3941087C>T	uc002lyz.3	+	7	704	c.414C>T	c.(412-414)GTC>GTT	p.V138V	ITGB1BP3_uc010xia.1_Silent_p.V143V	NM_170678	NP_733778	Q9NPI5	NRK2_HUMAN	integrin beta 1 binding protein 3	138					pyridine nucleotide biosynthetic process		ATP binding|metal ion binding|protein binding|ribosylnicotinamide kinase activity			skin(2)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00463)|STAD - Stomach adenocarcinoma(1328;0.18)		ACTACACAGTCCCTGATCCCC	0.582													48	108					0	0	0.003610	0	0
MPND	84954	broad.mit.edu	37	19	4359203	4359204	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:4359203_4359204GG>AA	uc002mae.2	+	11	1347_1348	c.1280_1281GG>AA	c.(1279-1281)AGG>AAA	p.R427K	MPND_uc010dtx.2_RNA|MPND_uc002mag.2_Missense_Mutation_p.R407K|MPND_uc002maf.2_Missense_Mutation_p.R457K|MPND_uc002mah.2_Missense_Mutation_p.R315K|MPND_uc002mai.2_Missense_Mutation_p.R316K	NM_032868	NP_116257	Q8N594	MPND_HUMAN	MPN domain containing isoform 1	427							peptidase activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		GACCTCGTGAGGCTCCAGGAAC	0.629													14	33					0	0	0.004672	0	0
CHAF1A	10036	broad.mit.edu	37	19	4418031	4418031	+	Silent	SNP	C	T	T	rs143106881		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:4418031C>T	uc002mal.2	+	4	1075	c.975C>T	c.(973-975)TTC>TTT	p.F325F		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	325	Arg/Glu/Lys-rich.				cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		CTAAGAAATTCGTCAAAGGCT	0.348								Chromatin_Structure					26	52					0	0	0.007291	0	0
GPR108	56927	broad.mit.edu	37	19	6733259	6733259	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:6733259G>A	uc002mfp.2	-	9	823	c.777C>T	c.(775-777)CCC>CCT	p.P259P	GPR108_uc010duv.2_5'Flank|GPR108_uc002mfn.2_5'UTR|GPR108_uc002mfo.3_Silent_p.P17P|GPR108_uc010duw.2_RNA	NM_001080452	NP_001073921	Q9NPR9	GP108_HUMAN	G protein-coupled receptor 108 isoform 1	259						integral to membrane					0						GCTTGAAAAGGGGCATCTCCG	0.488													26	46					0	0	0.008361	0	0
VAV1	7409	broad.mit.edu	37	19	6828654	6828654	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:6828654G>A	uc002mfu.1	+	12	1211	c.1114G>A	c.(1114-1116)GAG>AAG	p.E372K	VAV1_uc010xjh.1_Missense_Mutation_p.E340K|VAV1_uc010dva.1_Missense_Mutation_p.E372K|VAV1_uc002mfv.1_Missense_Mutation_p.E317K	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	372	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						GTGCGTGAACGAGGTCAAGCG	0.637													64	158					0	0	0.003610	0	0
EMR1	2015	broad.mit.edu	37	19	6921750	6921750	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:6921750C>T	uc002mfw.2	+	14	1685	c.1647C>T	c.(1645-1647)ATC>ATT	p.I549I	EMR1_uc010dvc.2_Silent_p.I549I|EMR1_uc010dvb.2_Silent_p.I497I|EMR1_uc010xji.1_Silent_p.I408I|EMR1_uc010xjj.1_Silent_p.I372I	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	549	GPS.|Extracellular (Potential).|Ser/Thr-rich.				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					AGAGGCCCATCTGTGTTTCCT	0.413													19	20					0	0	0.006122	0	0
INSR	3643	broad.mit.edu	37	19	7184365	7184365	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:7184365G>A	uc002mgd.1	-	3	1045	c.936C>T	c.(934-936)ATC>ATT	p.I312I	INSR_uc002mge.1_Silent_p.I312I|INSR_uc002mgf.2_Silent_p.I312I	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	312	Cys-rich.				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GACACTCAGGGATGCACTTGT	0.567													78	173					0	0	0.003610	0	0
TIMM44	10469	broad.mit.edu	37	19	8006055	8006055	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:8006055G>A	uc002miz.2	-	2	75	c.73C>T	c.(73-75)CTT>TTT	p.L25F	TIMM44_uc002mja.2_5'UTR|TIMM44_uc010dvx.1_RNA	NM_006351	NP_006342	O43615	TIM44_HUMAN	translocase of inner mitochondrial membrane 44	25					protein targeting to mitochondrion	mitochondrial inner membrane presequence translocase complex|mitochondrial matrix	ATP binding|P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1						TGGCTGGAAAGAAATTGGATT	0.547													31	72					0	0	0.002096	0	0
MYO1F	4542	broad.mit.edu	37	19	8610586	8610586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:8610586G>A	uc002mkg.2	-	13	1418	c.1304C>T	c.(1303-1305)CCA>CTA	p.P435L	MYO1F_uc002mkh.2_3'UTR	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	435	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						GTACTGGATTGGAGTCCAGCG	0.577													89	167					0	0	0.003610	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8651534	8651534	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:8651534G>A	uc002mkj.1	-	20	2585	c.2311C>T	c.(2311-2313)CTA>TTA	p.L771L	ADAMTS10_uc002mki.1_Silent_p.L258L|ADAMTS10_uc002mkk.1_Silent_p.L403L	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	771	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GTCCCAGCTAGAGGCAGACGG	0.622											OREG0025221	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	36	89					0	0	0.006230	0	0
MUC16	94025	broad.mit.edu	37	19	9046526	9046526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:9046526G>A	uc002mkp.2	-	5	35309	c.35105C>T	c.(35104-35106)TCC>TTC	p.S11702F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11704	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTTGTTCTGGAAACAGGTGT	0.507													48	83					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9057584	9057584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:9057584C>T	uc002mkp.2	-	3	30066	c.29862G>A	c.(29860-29862)ATG>ATA	p.M9954I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9956	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTGATGGTCATTTGTGTTG	0.498													97	231					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9061841	9061841	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:9061841C>T	uc002mkp.2	-	3	25809	c.25605G>A	c.(25603-25605)GAG>GAA	p.E8535E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8537	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGTGGTCATCTCTGAGTGTG	0.527													24	48					0	0	0.002299	0	0
MUC16	94025	broad.mit.edu	37	19	9063943	9063943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:9063943C>T	uc002mkp.2	-	3	23707	c.23503G>A	c.(23503-23505)GAG>AAG	p.E7835K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7837	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCGCTGGACTCCCTCAATCCA	0.542													14	39					0	0	0.003163	0	0
MUC16	94025	broad.mit.edu	37	19	9064386	9064386	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:9064386G>A	uc002mkp.2	-	3	23264	c.23060C>T	c.(23059-23061)CCA>CTA	p.P7687L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7689	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGGGGAGGATGGAGGGCTGGT	0.552													18	40					0	0	0.006122	0	0
MUC16	94025	broad.mit.edu	37	19	9065317	9065317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:9065317C>T	uc002mkp.2	-	3	22333	c.22129G>A	c.(22129-22131)GAT>AAT	p.D7377N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7379	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGTGGCACATCCCCAGCACCT	0.507													10	23					0	0	0.008291	0	0
MUC16	94025	broad.mit.edu	37	19	9085985	9085985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:9085985C>T	uc002mkp.2	-	1	6034	c.5830G>A	c.(5830-5832)GAA>AAA	p.E1944K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1944	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGACTTCTTCCACTGGAATG	0.493													23	44					0	0	0.002780	0	0
MUC16	94025	broad.mit.edu	37	19	9089865	9089865	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:9089865G>A	uc002mkp.2	-	1	2154	c.1950C>T	c.(1948-1950)TCC>TCT	p.S650S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	650	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGAGACACGGAGACTGGGA	0.552													40	102					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9090467	9090467	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:9090467C>T	uc002mkp.2	-	1	1552	c.1348G>A	c.(1348-1350)GAA>AAA	p.E450K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	450	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCAGTCATTTCGGACTCTTCT	0.488													60	106					0	0	0.003610	0	0
TSPAN16	26526	broad.mit.edu	37	19	11422892	11422892	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:11422892G>A	uc002mqv.1	+	6	831	c.681G>A	c.(679-681)GTG>GTA	p.V227V	TSPAN16_uc002mqu.1_RNA|uc002mqw.1_Intron	NM_012466	NP_036598	Q9UKR8	TSN16_HUMAN	transmembrane 4 superfamily member 16	227	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						GAGCTGCAGTGATACAGGTAA	0.343													9	19					0	0	0.006214	0	0
ZNF136	7695	broad.mit.edu	37	19	12298480	12298480	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:12298480C>T	uc002mti.2	+	4	1387	c.1287C>T	c.(1285-1287)TTC>TTT	p.F429F	ZNF136_uc010xmh.1_Silent_p.F363F	NM_003437	NP_003428	P52737	ZN136_HUMAN	zinc finger protein 136	429	C2H2-type 11.				negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|pancreas(1)	2						GTAAAGCTTTCGTTTCTTCAA	0.383													8	25					0	0	0.003080	0	0
ZNF799	90576	broad.mit.edu	37	19	12502860	12502860	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:12502860G>A	uc010dyt.2	-	4	502	c.352C>T	c.(352-354)CTT>TTT	p.L118F	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	118					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						TAACAATTAAGGGATGAATGA	0.438													38	51					0	0	0.006999	0	0
MAST1	22983	broad.mit.edu	37	19	12975890	12975890	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:12975890G>A	uc002mvm.2	+	14	1664	c.1536G>A	c.(1534-1536)AAG>AAA	p.K512K		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	512	Protein kinase.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						GTCACATCAAGCTCACAGATT	0.572													21	85					0	0	0.001882	0	0
MAST1	22983	broad.mit.edu	37	19	12975917	12975917	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:12975917G>C	uc002mvm.2	+	14	1691	c.1563G>C	c.(1561-1563)ATG>ATC	p.M521I		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	521	Protein kinase.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						TCTCCAAGATGGGGCTCATGA	0.572													22	80					0	0	0.003330	0	0
CACNA1A	773	broad.mit.edu	37	19	13476165	13476165	+	Silent	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:13476165T>C	uc010dze.2	-	5	986	c.750A>G	c.(748-750)GGA>GGG	p.G250G	CACNA1A_uc002mwy.3_Silent_p.G250G	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	250	I.|Extracellular (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TATGAAATTTTCCCATATAAA	0.443													45	97					0	0	0.003610	0	0
PKN1	5585	broad.mit.edu	37	19	14580207	14580207	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:14580207C>T	uc002myp.2	+	16	2199	c.2031C>T	c.(2029-2031)TTC>TTT	p.F677F	PKN1_uc002myq.2_Silent_p.F683F|PKN1_uc002myr.2_Silent_p.F17F	NM_002741	NP_002732	Q16512	PKN1_HUMAN	protein kinase N1 isoform 2	677	Protein kinase.				activation of JUN kinase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	endosome|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|GTP-Rho binding|histone binding|histone deacetylase binding|histone kinase activity (H3-T11 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|Rac GTPase binding			ovary(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8						GACACCCCTTCCTGGTGAACC	0.612													34	93					0	0	0.002836	0	0
NOTCH3	4854	broad.mit.edu	37	19	15272507	15272507	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:15272507G>A	uc002nan.2	-	33	6008	c.5932C>T	c.(5932-5934)CTG>TTG	p.L1978L		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1978	ANK 5.|Cytoplasmic (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			CGGGCGGCCAGGAATAGGGGG	0.637													11	20					0	0	0.000978	0	0
RASAL3	64926	broad.mit.edu	37	19	15566920	15566920	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:15566920G>A	uc002nbe.2	-	11	1802	c.1716C>T	c.(1714-1716)TCC>TCT	p.S572S	RASAL3_uc002nbd.2_5'Flank|RASAL3_uc010eaa.1_Silent_p.S60S	NM_022904	NP_075055	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	572	Ras-GAP.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity				0						CTCACTCGTAGGAATGGATAA	0.498													19	50					0	0	0.001882	0	0
CYP4F11	57834	broad.mit.edu	37	19	16024572	16024572	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:16024572C>T	uc002nbu.2	-	13	1581	c.1545G>A	c.(1543-1545)CGG>CGA	p.R515R	CYP4F11_uc010eab.1_3'UTR|CYP4F11_uc002nbt.2_Silent_p.R515R	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	515					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						GGGGCTCCACCCGCAGCCAAA	0.607													7	11					0	0	0.003080	0	0
ANKLE1	126549	broad.mit.edu	37	19	17397289	17397289	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:17397289C>T	uc002nga.2	+	9	2052	c.1776C>T	c.(1774-1776)CAC>CAT	p.H592H	ANKLE1_uc010xpm.1_RNA|ANKLE1_uc010eao.1_Silent_p.H588H|ANKLE1_uc010xpn.1_Missense_Mutation_p.T574I|ANKLE1_uc002nfy.2_Silent_p.H555H|ANKLE1_uc002nfz.2_Silent_p.H298H	NM_152363	NP_689576	Q8NAG6	ANKL1_HUMAN	ankyrin repeat domain 41	592						nuclear envelope					0						ACCTGCTGCACCGTGCCCTCC	0.662													14	16					0	0	0.001855	0	0
UNC13A	23025	broad.mit.edu	37	19	17728550	17728550	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:17728550G>A	uc002nhd.2	-	40	4783	c.4783C>T	c.(4783-4785)CTG>TTG	p.L1595L		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1507	MHD2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TTGATTAGCAGGTCGGTGGCC	0.637													34	107					0	0	0.004289	0	0
KCNN1	3780	broad.mit.edu	37	19	18100635	18100635	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:18100635C>T	uc002nht.2	+	8	1591	c.1281C>T	c.(1279-1281)TTC>TTT	p.F427F	KCNN1_uc010xqa.1_Silent_p.F427F	NM_002248	NP_002239	Q92952	KCNN1_HUMAN	potassium intermediate/small conductance	427	Calmodulin-binding (By similarity).				synaptic transmission	voltage-gated potassium channel complex	calmodulin binding|small conductance calcium-activated potassium channel activity				0						AGCGTAAGTTCCTCCAAGCCA	0.572													26	48					0	0	0.007291	0	0
HAPLN4	404037	broad.mit.edu	37	19	19371841	19371842	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:19371841_19371842CC>TT	uc002nmb.2	-	3	319_320	c.264_265GG>AA	c.(262-267)AAGGTG>AAAATG	p.V89M	HAPLN4_uc002nmc.2_Missense_Mutation_p.V89M	NM_023002	NP_075378	Q86UW8	HPLN4_HUMAN	hyaluronan and proteoglycan link protein 4	89	Ig-like C2-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			pancreas(1)	1			Epithelial(12;0.00575)			GGGTCCACCACCTTTGTCCACT	0.678													24	43					0	0	0.004672	0	0
NDUFA13	51079	broad.mit.edu	37	19	19637050	19637050	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:19637050A>G	uc010xqy.1	+	2	662	c.403A>G	c.(403-405)AAG>GAG	p.K135E	NDUFA13_uc002nms.2_Missense_Mutation_p.K135E|NDUFA13_uc010xqx.1_Missense_Mutation_p.K135E|YJEFN3_uc002nmt.1_5'Flank|YJEFN3_uc010ecf.1_5'Flank|YJEFN3_uc002nmu.1_5'Flank	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	52					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	GAGCATAATGAAGTGGAACCG	0.627													9	30					0	0	0.004482	0	0
LPAR2	9170	broad.mit.edu	37	19	19737444	19737444	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:19737444C>A	uc002nnb.3	-	2	789	c.650G>T	c.(649-651)CGG>CTG	p.R217L	LPAR2_uc002nna.3_Missense_Mutation_p.R217L|LPAR2_uc002nnc.3_Missense_Mutation_p.R217L	NM_004720	NP_004711	Q9HBW0	LPAR2_HUMAN	lysophosphatidic acid receptor 2	217	Cytoplasmic (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	cell surface|integral to plasma membrane	LIM domain binding|lipid binding			ovary(1)|breast(1)	2						CTGCACTCGCCGCCGCACGTA	0.602													31	69					8.16721e-17	9.18174e-17	0.002096	1	0
ZNF91	7644	broad.mit.edu	37	19	23542382	23542382	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:23542382G>A	uc002nre.2	-	4	3512	c.3399C>T	c.(3397-3399)CCC>CCT	p.P1133P	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Silent_p.P1101P	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	1133						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				CACATTTGTAGGGTTTCTCTC	0.328													15	36					0	0	0.003163	0	0
ZNF536	9745	broad.mit.edu	37	19	30936591	30936591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:30936591G>A	uc002nsu.1	+	2	2260	c.2122G>A	c.(2122-2124)GGG>AGG	p.G708R	ZNF536_uc010edd.1_Missense_Mutation_p.G708R	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	708					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CTCCCAGACCGGGAGTGCCCA	0.677													11	30					0	0	0.001368	0	0
KIAA0355	9710	broad.mit.edu	37	19	34832669	34832669	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:34832669C>T	uc002nvd.3	+	10	2689	c.1830C>T	c.(1828-1830)TCC>TCT	p.S610S		NM_014686	NP_055501	O15063	K0355_HUMAN	hypothetical protein LOC9710	610										ovary(1)	1	Esophageal squamous(110;0.162)					CTCAGAATTCCAGTAATACAG	0.453													22	47					0	0	0.001882	0	0
HPN	3249	broad.mit.edu	37	19	35551285	35551285	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:35551285C>T	uc002nxq.1	+	9	734	c.489C>T	c.(487-489)ATC>ATT	p.I163I	HPN_uc002nxr.1_Silent_p.I163I|HPN_uc002nxs.1_Intron|HPN_uc010xsh.1_Silent_p.I132I|HPN_uc002nxt.1_Silent_p.I47I|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	163	Extracellular (Potential).|Peptidase S1.				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	TGGACCGCATCGTGGGAGGCC	0.692													24	43					0	0	0.004656	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36278422	36278422	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:36278422C>T	uc002obs.1	+	21	2557	c.2472C>T	c.(2470-2472)CCC>CCT	p.P824P	ARHGAP33_uc002obt.1_Silent_p.P849P|ARHGAP33_uc010eel.2_Silent_p.P573P|ARHGAP33_uc002obv.1_Silent_p.P573P	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						GCCAGCGGCCCATGGGGACCT	0.687													10	16					0	0	0.000978	0	0
LRFN3	79414	broad.mit.edu	37	19	36435786	36435786	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:36435786C>T	uc002oco.2	+	3	2204	c.1752C>T	c.(1750-1752)TCC>TCT	p.S584S		NM_024509	NP_078785	Q9BTN0	LRFN3_HUMAN	leucine rich repeat and fibronectin type III	584	Cytoplasmic (Potential).				cell adhesion	axon|cell junction|dendrite|integral to membrane|postsynaptic membrane|presynaptic membrane					0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GCGTTTGCTCCCAGACCAAcg	0.453													10	13					0	0	0.008291	0	0
WDR62	284403	broad.mit.edu	37	19	36562584	36562584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:36562584C>T	uc002odc.2	+	8	1100	c.1009C>T	c.(1009-1011)CTT>TTT	p.L337F	WDR62_uc002odd.2_Missense_Mutation_p.L337F|WDR62_uc002odb.2_Missense_Mutation_p.L337F	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	337					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GCCACACTACCTTGGGGTAGA	0.617													13	29					0	0	0.002450	0	0
ZNF540	163255	broad.mit.edu	37	19	38103018	38103018	+	Silent	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:38103018T>G	uc002ogq.2	+	5	1169	c.837T>G	c.(835-837)GGT>GGG	p.G279G	ZNF540_uc002ogu.2_Silent_p.G279G|ZNF540_uc010efq.2_Silent_p.G247G	NM_152606	NP_689819	Q8NDQ6	ZN540_HUMAN	zinc finger protein 540	279	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GTGATAAGGGTTTTTTTAGTA	0.299													21	31					0	0	0.001882	0	0
ZNF540	163255	broad.mit.edu	37	19	38103515	38103515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:38103515G>A	uc002ogq.2	+	5	1666	c.1334G>A	c.(1333-1335)GGG>GAG	p.G445E	ZNF540_uc002ogu.2_Missense_Mutation_p.G445E|ZNF540_uc010efq.2_Missense_Mutation_p.G413E	NM_152606	NP_689819	Q8NDQ6	ZN540_HUMAN	zinc finger protein 540	445	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AAGGAATGCGGGAAAGCCTTT	0.423													18	39					0	0	0.006122	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38632042	38632042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:38632042C>T	uc002ohk.2	+	11	3871	c.3362C>T	c.(3361-3363)CCC>CTC	p.P1121L		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	1121					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CCCATAGTCCCCTTCCGGGAG	0.647													36	86					0	0	0.007835	0	0
YIF1B	90522	broad.mit.edu	37	19	38799877	38799877	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:38799877G>A	uc002ohz.2	-	3	438	c.389C>T	c.(388-390)CCC>CTC	p.P130L	YIF1B_uc002ohw.2_Missense_Mutation_p.P99L|YIF1B_uc002ohx.2_Missense_Mutation_p.P115L|YIF1B_uc010xtx.1_Missense_Mutation_p.P113L|YIF1B_uc010xty.1_Missense_Mutation_p.P99L|YIF1B_uc002oia.2_Missense_Mutation_p.P127L|YIF1B_uc002ohy.2_Missense_Mutation_p.P127L|YIF1B_uc002oib.2_Missense_Mutation_p.P127L	NM_001039672	NP_001034761	Q5BJH7	YIF1B_HUMAN	Yip1 interacting factor homolog B isoform 5	130	Cytoplasmic (Potential).					integral to membrane					0	all_cancers(60;1.07e-06)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GTGTAGGTAGGGGAAGAACAG	0.607													57	142					0	0	0.003610	0	0
RYR1	6261	broad.mit.edu	37	19	38976621	38976621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:38976621C>T	uc002oit.2	+	34	5456	c.5326C>T	c.(5326-5328)CAT>TAT	p.H1776Y	RYR1_uc002oiu.2_Missense_Mutation_p.H1776Y	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1776	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCCCCCGCATCATTTCTCGCC	0.687													15	29					0	0	0.003163	0	0
RYR1	6261	broad.mit.edu	37	19	38976836	38976836	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:38976836C>T	uc002oit.2	+	34	5671	c.5541C>T	c.(5539-5541)ACC>ACT	p.T1847T	RYR1_uc002oiu.2_Silent_p.T1847T	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1847	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCGTGTCCACCCTGCTGGTAA	0.527													69	190					0	0	0.003610	0	0
RYR1	6261	broad.mit.edu	37	19	38979973	38979973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:38979973G>A	uc002oit.2	+	35	5834	c.5704G>A	c.(5704-5706)GAA>AAA	p.E1902K	RYR1_uc002oiu.2_Missense_Mutation_p.E1902K	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1902	Glu-rich (acidic).|Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	aacagcacaggaaaaggaaga	0.209													13	25					0	0	0.001855	0	0
CAPN12	147968	broad.mit.edu	37	19	39228929	39228929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:39228929C>T	uc002ojd.1	-	8	1258	c.949G>A	c.(949-951)GAG>AAG	p.E317K	CAPN12_uc010egd.1_5'Flank|CAPN12_uc002ojc.1_5'Flank	NM_144691	NP_653292	Q6ZSI9	CAN12_HUMAN	calpain 12	317	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2	all_cancers(60;2.87e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			TCGCCATCCTCCTTTTTCACC	0.652													12	22					0	0	0.002450	0	0
LRFN1	57622	broad.mit.edu	37	19	39798745	39798745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:39798745G>A	uc002okw.2	-	2	1844	c.1844C>T	c.(1843-1845)GCT>GTT	p.A615V		NM_020862	NP_065913	Q9P244	LRFN1_HUMAN	leucine rich repeat and fibronectin type III	615	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic density|postsynaptic membrane				ovary(2)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			GGCGGGGGCAGCCTGGGACTC	0.746													4	18					0	0	0.001168	0	0
SUPT5H	6829	broad.mit.edu	37	19	39963960	39963960	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:39963960C>T	uc002olo.3	+	24	2555	c.2376C>T	c.(2374-2376)CCC>CCT	p.P792P	SUPT5H_uc002olp.3_Silent_p.P792P|SUPT5H_uc002olq.3_Silent_p.P788P|SUPT5H_uc002oln.3_Silent_p.P792P|SUPT5H_uc002olr.3_Silent_p.P792P|SUPT5H_uc002ols.1_Silent_p.P415P|SUPT5H_uc010egp.1_Missense_Mutation_p.P158S	NM_001111020	NP_001104490	O00267	SPT5H_HUMAN	suppressor of Ty 5 homolog isoform a	792	CTR1-6.|9 X 7 AA approximate tandem repeats of G- S-[QR]-T-P-X-[YQ], motif CTR1.				cell cycle|chromatin remodeling|mRNA capping|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|response to organic substance|retroviral genome replication|transcription elongation from RNA polymerase II promoter	nucleoplasm	enzyme binding|protein heterodimerization activity			ovary(3)|pancreas(1)	4	all_cancers(60;6.69e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;1.57e-06)|Ovarian(47;0.159)		Epithelial(26;3.9e-26)|all cancers(26;1.35e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CACAGACACCCCTCCAGGATG	0.617													38	70					0	0	0.002222	0	0
LGALS14	56891	broad.mit.edu	37	19	40197274	40197274	+	Missense_Mutation	SNP	C	T	T	rs150238702		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:40197274C>T	uc002omg.2	+	2	276	c.53C>T	c.(52-54)TCG>TTG	p.S18L	LGALS14_uc002omf.2_Missense_Mutation_p.S47L	NM_020129	NP_064514	Q8TCE9	PPL13_HUMAN	lectin, galactoside-binding, soluble, 14 isoform	18	Galectin.					nucleus	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;4.39e-06)|all_lung(34;6.76e-08)|Lung NSC(34;7.98e-08)|Ovarian(47;0.06)	Myeloproliferative disorder(2;0.0741)	Epithelial(26;1.08e-24)|OV - Ovarian serous cystadenocarcinoma(5;1.92e-24)|all cancers(26;4.12e-22)			CCTGTTGGTTCGTGCGTGATA	0.507													75	121					0	0	0.003610	0	0
PRX	57716	broad.mit.edu	37	19	40902863	40902863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:40902863G>A	uc002onr.2	-	7	1665	c.1396C>T	c.(1396-1398)CCA>TCA	p.P466S	PRX_uc002onq.2_Missense_Mutation_p.P327S|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	466	5.|55 X 5 AA approximate tandem repeats of [LVMAG]-[PSREQC]-[EDKL]-[LIVMAP]- [AQKHRPE]; that may have a tripeptide spacer of [LV]-P-[KER].				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TCCACCTCTGGGAGTCGAACC	0.597													58	111					0	0	0.003610	0	0
SHKBP1	92799	broad.mit.edu	37	19	41095040	41095040	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:41095040C>T	uc002oob.2	+	15	1594	c.1545C>T	c.(1543-1545)CCC>CCT	p.P515P	SHKBP1_uc002ooc.2_Silent_p.P490P|SHKBP1_uc002ood.2_Intron|SHKBP1_uc010xvl.1_Silent_p.P438P|SHKBP1_uc002ooe.2_Silent_p.P352P|SHKBP1_uc002oof.2_Silent_p.P352P|SHKBP1_uc010xvm.1_Silent_p.P295P|SHKBP1_uc010xvn.1_Silent_p.P393P	NM_138392	NP_612401	Q8TBC3	SHKB1_HUMAN	SH3KBP1 binding protein 1	515						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|pancreas(1)	2			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			AGGTGGTGCCCAGTGCCAGCC	0.647													13	25					0	0	0.001855	0	0
SHKBP1	92799	broad.mit.edu	37	19	41096235	41096235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:41096235C>T	uc002oob.2	+	16	1724	c.1675C>T	c.(1675-1677)CGG>TGG	p.R559W	SHKBP1_uc002ooc.2_Missense_Mutation_p.R534W|SHKBP1_uc002ood.2_Intron|SHKBP1_uc010xvl.1_Missense_Mutation_p.R482W|SHKBP1_uc002ooe.2_Missense_Mutation_p.R396W|SHKBP1_uc002oof.2_Missense_Mutation_p.R396W|SHKBP1_uc010xvm.1_Missense_Mutation_p.R339W|SHKBP1_uc010xvn.1_Missense_Mutation_p.R437W|LTBP4_uc002oog.1_5'Flank	NM_138392	NP_612401	Q8TBC3	SHKB1_HUMAN	SH3KBP1 binding protein 1	559	WD 5.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|pancreas(1)	2			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GCTCGGCTCTCGGCCCCGGCG	0.711													5	16					0	0	0.001168	0	0
CEACAM6	4680	broad.mit.edu	37	19	42265234	42265234	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:42265234G>A	uc002orm.2	+	3	651	c.502G>A	c.(502-504)GAA>AAA	p.E168K		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	168	Ig-like C2-type 1.				cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		CTTCACCTGTGAACCTGAGGT	0.567													80	142					0	0	0.003610	0	0
ERF	2077	broad.mit.edu	37	19	42753410	42753410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:42753410G>A	uc002ote.3	-	4	1012	c.854C>T	c.(853-855)CCG>CTG	p.P285L	ERF_uc002otd.3_Missense_Mutation_p.P16L	NM_006494	NP_006485	P50548	ERF_HUMAN	Ets2 repressor factor	285					cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			lung(1)|kidney(1)|central_nervous_system(1)|skin(1)	4		Prostate(69;0.00682)				GGGGTACATCGGGCTCAGCGT	0.697													13	16					0	0	0.001368	0	0
PSG3	5671	broad.mit.edu	37	19	43236937	43236937	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:43236937G>A	uc002oue.2	-	3	840	c.708C>T	c.(706-708)CTC>CTT	p.L236L	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Silent_p.L258L	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	236					defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GATACTCACGGAGGAGATTCA	0.537													106	202					0	0	0.003610	0	0
PSG3	5671	broad.mit.edu	37	19	43243169	43243169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:43243169G>A	uc002oue.2	-	2	269	c.137C>T	c.(136-138)TCC>TTC	p.S46F	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.S68F	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	46	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				CTTCCCCTTGGAAACTTTGGT	0.463													55	146					0	0	0.003610	0	0
ZNF283	284349	broad.mit.edu	37	19	44352446	44352446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:44352446C>T	uc002oxr.3	+	7	1961	c.1693C>T	c.(1693-1695)CAT>TAT	p.H565Y	ZNF283_uc002oxp.3_Missense_Mutation_p.H426Y	NM_181845	NP_862828	Q8N7M2	ZN283_HUMAN	zinc finger protein 283	565					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				TCAGAAAATTCATACCGGTGA	0.418													22	34					0	0	0.001882	0	0
ZNF229	7772	broad.mit.edu	37	19	44934700	44934700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:44934700C>T	uc002oze.1	-	6	690	c.256G>A	c.(256-258)GAT>AAT	p.D86N	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Missense_Mutation_p.D80N	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	86	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				TACTCCGTATCCTTTCCATTC	0.403													6	33					0	0	0.001168	0	0
CEACAM20	125931	broad.mit.edu	37	19	45028276	45028276	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:45028276A>C	uc010ejn.1	-	3	231	c.215T>G	c.(214-216)ATT>AGT	p.I72S	CEACAM20_uc010ejo.1_Missense_Mutation_p.I72S|CEACAM20_uc010ejp.1_Missense_Mutation_p.I72S|CEACAM20_uc010ejq.1_Missense_Mutation_p.I72S	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	72	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				GCTGACTGCAATGGAGGGTTT	0.522													105	273					0	0	0.003610	0	0
CCDC8	83987	broad.mit.edu	37	19	46915445	46915445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:46915445C>T	uc002pep.2	-	1	1475	c.623G>A	c.(622-624)CGG>CAG	p.R208Q		NM_032040	NP_114429	Q9H0W5	CCDC8_HUMAN	coiled-coil domain containing 8	208						plasma membrane				ovary(3)	3				OV - Ovarian serous cystadenocarcinoma(262;4.66e-05)|all cancers(93;0.000582)|Epithelial(262;0.00428)|GBM - Glioblastoma multiforme(486;0.0421)		CTTCACCCTCCGCTTCAGCTT	0.692													8	19					0	0	0.003080	0	0
NPAS1	4861	broad.mit.edu	37	19	47535945	47535945	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:47535945C>T	uc002pfw.2	+	5	673	c.477C>T	c.(475-477)TTC>TTT	p.F159F	NPAS1_uc002pfx.2_5'UTR|NPAS1_uc002pfy.2_Silent_p.F159F|NPAS1_uc010xyj.1_5'Flank	NM_002517	NP_002508	Q99742	NPAS1_HUMAN	neuronal PAS domain protein 1	159	PAS 1.				central nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0		all_cancers(25;4.31e-08)|all_epithelial(76;2.96e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.102)		all cancers(93;6.02e-05)|OV - Ovarian serous cystadenocarcinoma(262;7.35e-05)|Epithelial(262;0.00389)|GBM - Glioblastoma multiforme(486;0.0252)		AAGGAAAATTCCTCTACATCT	0.577											OREG0025585	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	46					0	0	0.006320	0	0
CA11	770	broad.mit.edu	37	19	49142225	49142225	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:49142225A>C	uc002pjz.1	-	8	1443	c.881T>G	c.(880-882)TTG>TGG	p.L294W	SEC1_uc010xzv.1_Intron|SEC1_uc002pka.2_Intron|SEC1_uc010xzw.1_Intron|SEC1_uc010ema.2_Intron|DBP_uc002pjx.3_5'Flank|DBP_uc002pjy.2_5'Flank|DBP_uc010elz.1_5'Flank	NM_001217	NP_001208	O75493	CAH11_HUMAN	carbonic anhydrase XI precursor	294						extracellular region					0		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000103)|all cancers(93;0.000119)|GBM - Glioblastoma multiforme(486;0.00634)|Epithelial(262;0.016)		CCTGTGGGCCAAGGGCTGCAG	0.652													10	21					0	0	0.006214	0	0
FLT3LG	2323	broad.mit.edu	37	19	49979049	49979049	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:49979049C>T	uc010yau.1	+	3	225	c.135C>T	c.(133-135)ATC>ATT	p.I45I	FLT3LG_uc002pnv.2_5'UTR|FLT3LG_uc002pnw.2_5'UTR|FLT3LG_uc002pnu.2_Silent_p.I45I|FLT3LG_uc002pnx.2_Silent_p.I45I|FLT3LG_uc010yav.1_5'UTR	NM_001459	NP_001450	P49771	FLT3L_HUMAN	fms-related tyrosine kinase 3 ligand precursor	45	Extracellular (Potential).				positive regulation of cell proliferation|signal transduction	extracellular space|integral to membrane|plasma membrane|soluble fraction	cytokine activity				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00154)|GBM - Glioblastoma multiforme(486;0.0246)		CTGTCAAAATCCGTGAGCTGG	0.507													26	27					0	0	0.003954	0	0
RRAS	6237	broad.mit.edu	37	19	50138891	50138891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:50138891G>A	uc002pop.1	-	6	644	c.599C>T	c.(598-600)CCG>CTG	p.P200L		NM_006270	NP_006261	P10301	RRAS_HUMAN	related RAS viral (r-ras) oncogene homolog	200					axon guidance|Ras protein signal transduction|synaptic transmission	intracellular|plasma membrane	GDP binding|GTP binding|GTPase activity|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00114)|GBM - Glioblastoma multiforme(134;0.0206)		GGGAGGGCTCGGTGGGAGCTC	0.617													40	100					0	0	0.006999	0	0
SHANK1	50944	broad.mit.edu	37	19	51218955	51218955	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:51218955G>A	uc002psx.1	-	3	511	c.492C>T	c.(490-492)ACC>ACT	p.T164T		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	164					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		CATCCAGGTTGGTCTGTTTGT	0.547													60	116					0	0	0.003610	0	0
KLK6	5653	broad.mit.edu	37	19	51465128	51465128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:51465128G>A	uc002pui.2	-	6	714	c.454C>T	c.(454-456)CCT>TCT	p.P152S	KLK6_uc010eoj.2_Intron|KLK6_uc002puh.2_Missense_Mutation_p.P161S|KLK6_uc002puj.2_Missense_Mutation_p.P45S|KLK6_uc010ycn.1_Missense_Mutation_p.P45S|KLK6_uc002pul.2_Missense_Mutation_p.P152S|KLK6_uc002pum.2_Missense_Mutation_p.P45S	NM_001012964	NP_001012982	Q92876	KLK6_HUMAN	kallikrein-related peptidase 6 isoform A	152	Peptidase S1.				amyloid precursor protein metabolic process|central nervous system development|collagen catabolic process|hormone metabolic process|myelination|positive regulation of G-protein coupled receptor protein signaling pathway|protein autoprocessing|proteolysis|regulation of cell differentiation|tissue regeneration	endoplasmic reticulum|extracellular region|microsome|mitochondrion|nucleolus	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00372)|GBM - Glioblastoma multiforme(134;0.00871)		ATGGTGTCAGGGAAATCACCT	0.587													20	43					0	0	0.002299	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51920542	51920542	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:51920542G>A	uc002pwo.2	-	2	831	c.215C>T	c.(214-216)CCT>CTT	p.P72L	SIGLEC10_uc002pwp.2_Missense_Mutation_p.P72L|SIGLEC10_uc002pwq.2_Missense_Mutation_p.P72L|SIGLEC10_uc002pwr.2_Missense_Mutation_p.P72L|SIGLEC10_uc010ycy.1_Missense_Mutation_p.P72L|SIGLEC10_uc010ycz.1_Missense_Mutation_p.P72L|SIGLEC10_uc010eow.2_Intron|SIGLEC10_uc002pws.1_Missense_Mutation_p.P56L	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	72	Extracellular (Potential).|Ig-like V-type.				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		TGTGGCCACAGGAGCACCCTT	0.592													22	53					0	0	0.001882	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51955768	51955768	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:51955768C>T	uc002pwt.2	-	7	1432	c.1365G>A	c.(1363-1365)GTG>GTA	p.V455V	SIGLEC8_uc010yda.1_Silent_p.V346V|SIGLEC8_uc002pwu.2_Intron|SIGLEC8_uc010eox.2_Silent_p.V362V	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	455	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		CCTGAGGCTTCACTTTATGGA	0.562													27	51					0	0	0.007291	0	0
ZNF677	342926	broad.mit.edu	37	19	53741297	53741297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:53741297G>A	uc002qbf.1	-	5	868	c.683C>T	c.(682-684)CCA>CTA	p.P228L	ZNF677_uc002qbg.1_Missense_Mutation_p.P228L	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	zinc finger protein 677	228					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00352)		AGGAGGAAGTGGTGAAACTGA	0.353													21	23					0	0	0.008871	0	0
VN1R2	317701	broad.mit.edu	37	19	53762433	53762433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:53762433C>T	uc002qbi.2	+	1	889	c.805C>T	c.(805-807)CAT>TAT	p.H269Y		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	269	Helical; Name=5; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		GACATCCTTCCATGATGTTTT	0.453													49	86					0	0	0.003610	0	0
ZNF765	91661	broad.mit.edu	37	19	53911937	53911937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:53911937C>T	uc010ydx.1	+	6	1456	c.1129C>T	c.(1129-1131)CAT>TAT	p.H377Y	ZNF765_uc002qbm.2_Missense_Mutation_p.H377Y|ZNF765_uc002qbn.2_Intron	NM_001040185	NP_001035275	Q7L2R6	ZN765_HUMAN	zinc finger protein 765	377	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00379)		TCATAGAGTTCATACTGGAGA	0.408													24	35					0	0	0.002780	0	0
ZNF813	126017	broad.mit.edu	37	19	53994186	53994186	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:53994186C>T	uc002qbu.2	+	4	828	c.700C>T	c.(700-702)CAA>TAA	p.Q234*	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	234	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		AAGGAAACATCAAATAATCCA	0.383													24	52					0	0	0.002299	0	0
MIR518C	574477	broad.mit.edu	37	19	54212022	54212022	+	RNA	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:54212022G>A	hsa-mir-518c|MI0003159	+			c.34G>A			MIR524_hsa-mir-524|MI0003160_5'Flank																	0						TCTCTGGAGGGAAGCACTTTC	0.403													13	29					0	0	0.002450	0	0
NLRP12	91662	broad.mit.edu	37	19	54313050	54313050	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:54313050C>T	uc002qch.3	-	3	2083	c.1863G>A	c.(1861-1863)CAG>CAA	p.Q621Q	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Silent_p.Q621Q|NLRP12_uc002qcj.3_Silent_p.Q621Q|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.Q621Q	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	621					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		ACTCCTCCTCCTGGATCTCGT	0.557													20	29					0	0	0.001882	0	0
PRKCG	5582	broad.mit.edu	37	19	54394975	54394975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:54394975G>A	uc002qcq.1	+	6	859	c.577G>A	c.(577-579)GAT>AAT	p.D193N	PRKCG_uc010eqz.1_Missense_Mutation_p.D193N|PRKCG_uc010yef.1_Missense_Mutation_p.D193N|PRKCG_uc010yeg.1_Missense_Mutation_p.D193N|PRKCG_uc010yeh.1_Missense_Mutation_p.D80N	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	193	C2.	Calcium 2 (By similarity).			activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding	p.D193N(1)		lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		TGGTCTCTCTGATCCCTATGT	0.537													40	101					0	0	0.002852	0	0
TMC4	147798	broad.mit.edu	37	19	54676765	54676765	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:54676765C>T	uc010erf.2	-	1	180	c.48G>A	c.(46-48)AGG>AGA	p.R16R	TMC4_uc002qdo.2_Silent_p.R16R	NM_001145303	NP_001138775	Q7Z404	TMC4_HUMAN	transmembrane channel-like 4 isoform 1	16	Extracellular (Potential).					integral to membrane				pancreas(1)	1	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					CCAGCCACCCCCTAGAGGAGC	0.632													37	102					0	0	0.003610	0	0
LILRA3	11026	broad.mit.edu	37	19	54802032	54802032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:54802032G>A	uc002qfd.2	-	6	1221	c.1156C>T	c.(1156-1158)CCT>TCT	p.P386S	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Missense_Mutation_p.P322S	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	386	Ig-like C2-type 4.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GAGGTCACAGGACTCATGGGG	0.587													49	107					0	0	0.003610	0	0
LILRA3	11026	broad.mit.edu	37	19	54802566	54802566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:54802566C>T	uc002qfd.2	-	5	940	c.875G>A	c.(874-876)GGG>GAG	p.G292E	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Missense_Mutation_p.G228E	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	292	Ig-like C2-type 3.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GTACTGGCCCCCGTAGGAGCG	0.682													17	63					0	0	0.001523	0	0
LILRA2	11027	broad.mit.edu	37	19	55086465	55086465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:55086465C>T	uc002qgg.3	+	4	709	c.620C>T	c.(619-621)TCT>TTT	p.S207F	LILRA2_uc010ern.2_Missense_Mutation_p.S207F|LILRA2_uc002qgf.2_Missense_Mutation_p.S207F|LILRA2_uc010yfe.1_Missense_Mutation_p.S207F|LILRA2_uc010yff.1_Missense_Mutation_p.S195F|LILRA2_uc010ero.2_Missense_Mutation_p.S195F|LILRA2_uc010yfg.1_Missense_Mutation_p.S207F	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	207	Extracellular (Potential).|Ig-like C2-type 2.				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		TATGTGTGGTCTCTACCCAGT	0.587													48	100					0	0	0.003610	0	0
LILRA1	11024	broad.mit.edu	37	19	55105721	55105721	+	Silent	SNP	C	T	T	rs147201880	byFrequency	TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:55105721C>T	uc002qgh.1	+	2	194	c.12C>T	c.(10-12)ATC>ATT	p.I4I	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Silent_p.I4I	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	4					cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		TGACCCCCATCGTCACAGTCC	0.582													37	57					0	0	0.003610	0	0
KIR2DL4	3805	broad.mit.edu	37	19	55315353	55315353	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:55315353C>T	uc010yfm.1	+	2	88	c.48C>T	c.(46-48)TTC>TTT	p.F16F	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL4_uc010yfl.1_Silent_p.F11F|KIR2DL4_uc002qhg.2_Silent_p.F16F|KIR2DL4_uc002qhi.2_Silent_p.F16F|KIR2DL4_uc002qhh.2_Silent_p.F16F|KIR2DL4_uc002qhj.2_Silent_p.F16F|KIR2DL4_uc002qhf.2_Silent_p.F16F|KIR2DL4_uc010esd.2_Silent_p.F16F|KIR2DL4_uc010ese.2_5'Flank	NM_002255	NP_002246	Q99706	KI2L4_HUMAN	killer cell immunoglobulin-like receptor, two	16					cellular defense response|regulation of immune response	integral to plasma membrane	protein binding|transmembrane receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0192)		CAGGGTTCTTCTTGGACCAGA	0.502													56	28					0	0	0.003610	0	0
NCR1	9437	broad.mit.edu	37	19	55424075	55424075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:55424075C>T	uc002qib.2	+	7	789	c.751C>T	c.(751-753)CAC>TAC	p.H251Y	NCR1_uc002qic.2_Missense_Mutation_p.H250Y|NCR1_uc002qie.2_Missense_Mutation_p.H234Y|NCR1_uc002qid.2_Missense_Mutation_p.H156Y|NCR1_uc002qif.2_Missense_Mutation_p.H139Y|NCR1_uc010esj.2_Missense_Mutation_p.H144Y	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	251	Extracellular (Potential).				cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		CCTCTGGGATCACACTGCCCA	0.478													15	50					0	0	0.004007	0	0
NLRP7	199713	broad.mit.edu	37	19	55451188	55451188	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:55451188G>A	uc002qih.3	-	4	1075	c.999C>T	c.(997-999)TTC>TTT	p.F333F	NLRP7_uc002qig.3_Silent_p.F333F|NLRP7_uc002qii.3_Silent_p.F333F|NLRP7_uc010esk.2_Silent_p.F333F|NLRP7_uc010esl.2_Silent_p.F361F	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	333	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		AGTGTCTCAGGAAATAGGCCC	0.647													20	31					0	0	0.002780	0	0
SBK2	646643	broad.mit.edu	37	19	56041190	56041190	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:56041190G>A	uc010ygc.1	-	3	957	c.957C>T	c.(955-957)ATC>ATT	p.I319I		NM_001101401	NP_001094871	P0C263	SBK2_HUMAN	SH3-binding domain kinase family, member 2	319	Protein kinase.						ATP binding|protein serine/threonine kinase activity				0						CCCTGATGGCGATCACAGCGC	0.756													20	35					0	0	0.002299	0	0
NLRP4	147945	broad.mit.edu	37	19	56369320	56369320	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:56369320T>A	uc002qmd.3	+	3	983	c.561T>A	c.(559-561)TAT>TAA	p.Y187*	NLRP4_uc002qmf.2_Nonsense_Mutation_p.Y112*|NLRP4_uc010etf.2_Nonsense_Mutation_p.Y18*	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	187	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		ACACGTTCTATTTCTGCTGCA	0.502													48	91					0	0	0.003610	0	0
NLRP4	147945	broad.mit.edu	37	19	56370296	56370296	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:56370296G>A	uc002qmd.3	+	3	1959	c.1537G>A	c.(1537-1539)GAA>AAA	p.E513K	NLRP4_uc002qmf.2_Missense_Mutation_p.E438K|NLRP4_uc010etf.2_Missense_Mutation_p.E344K	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	513							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		AAAGGAACAAGAAAAACTGGA	0.423													28	59					0	0	0.006320	0	0
NLRP13	126204	broad.mit.edu	37	19	56423350	56423350	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:56423350C>T	uc010ygg.1	-	5	1858	c.1833G>A	c.(1831-1833)AGG>AGA	p.R611R		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	611							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CCTCCATTACCCTGGGAGATA	0.398													18	36					0	0	0.004990	0	0
NLRP8	126205	broad.mit.edu	37	19	56466604	56466604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:56466604C>T	uc002qmh.2	+	3	1251	c.1180C>T	c.(1180-1182)CGG>TGG	p.R394W	NLRP8_uc010etg.2_Missense_Mutation_p.R394W	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	394	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		CTCCATGTGCCGGGTCCCTGT	0.468													27	67					0	0	0.008361	0	0
ZIM3	114026	broad.mit.edu	37	19	57646872	57646872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:57646872G>A	uc002qnz.1	-	5	1219	c.833C>T	c.(832-834)TCC>TTC	p.S278F		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	278					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ACACTGATAGGATTTCTTGGC	0.373													50	74					0	0	0.003610	0	0
ZNF749	388567	broad.mit.edu	37	19	57955356	57955356	+	Silent	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:57955356A>G	uc002qoq.2	+	3	1094	c.840A>G	c.(838-840)TCA>TCG	p.S280S	ZNF547_uc002qpm.3_Intron	NM_001023561	NP_001018855	O43361	ZN749_HUMAN	zinc finger protein 749	280					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)|Lung(386;0.177)		GCTTTCTTTCAAAAAGGTCTG	0.448													24	46					0	0	0.003330	0	0
SNTG2	54221	broad.mit.edu	37	2	1133456	1133456	+	Silent	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:1133456T>C	uc002qwq.2	+	6	500	c.372T>C	c.(370-372)GTT>GTC	p.V124V	SNTG2_uc002qwp.2_RNA|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	124	PDZ.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		CTGTTCAGGTTAATGGCATAC	0.269													46	31					0	0	0.003610	0	0
DDX1	1653	broad.mit.edu	37	2	15770985	15770985	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:15770985C>T	uc002rce.2	+	26	2466	c.2178C>T	c.(2176-2178)TTC>TTT	p.F726F		NM_004939	NP_004930	Q92499	DDX1_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	726	Necessary for interaction with HNRNPK.				DNA duplex unwinding|double-strand break repair|multicellular organismal development|regulation of transcription, DNA-dependent|regulation of translational initiation|spliceosome assembly|transcription, DNA-dependent	cleavage body|stress granule|tRNA-splicing ligase complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|DNA/RNA helicase activity|exonuclease activity|poly(A) RNA binding|protein binding|RNA helicase activity|transcription cofactor activity			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.197)	all_epithelial(98;2.96e-07)|Acute lymphoblastic leukemia(84;4.24e-05)|Ovarian(717;0.0694)	GBM - Glioblastoma multiforme(3;0.00969)	Epithelial(75;4.35e-05)|OV - Ovarian serous cystadenocarcinoma(76;0.133)		AGACATCTTTCCTGCATCTTG	0.418													56	32					0	0	0.003610	0	0
KCNS3	3790	broad.mit.edu	37	2	18113419	18113419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:18113419G>A	uc002rcv.2	+	3	1595	c.1144G>A	c.(1144-1146)GCG>ACG	p.A382T	KCNS3_uc002rcw.2_Missense_Mutation_p.A382T	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	382	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GGTCACCTTGGCGGGAAAGCT	0.552													53	25					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21224685	21224685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:21224685C>T	uc002red.2	-	29	13737	c.13609G>A	c.(13609-13611)GAG>AAG	p.E4537K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4537					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTCAGTAACTCCGTGATGTAT	0.358													435	229					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21229895	21229895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:21229895C>T	uc002red.2	-	26	9973	c.9845G>A	c.(9844-9846)AGT>AAT	p.S3282N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3282					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GATGGAGAAACTAGGCATGCT	0.468													412	189					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21230801	21230801	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:21230801G>A	uc002red.2	-	26	9067	c.8939C>T	c.(8938-8940)TCC>TTC	p.S2980F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2980					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AAAGTTGAGGGAGCCAGATTC	0.428													391	193					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21250807	21250807	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:21250807T>A	uc002red.2	-	14	2088	c.1960A>T	c.(1960-1962)AAA>TAA	p.K654*		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	654	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CCTTCTATTTTGGCTGAGGCT	0.403													361	169					0	0	0.003610	0	0
CGREF1	10669	broad.mit.edu	37	2	27324160	27324160	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:27324160C>T	uc010eys.1	-	7	1030	c.888G>A	c.(886-888)GTG>GTA	p.V296V	CGREF1_uc010ylf.1_Intron|CGREF1_uc002rip.1_Intron|CGREF1_uc002riq.2_Silent_p.V313V|CGREF1_uc010eyr.1_Silent_p.V418V|CGREF1_uc002rir.1_Silent_p.V296V|CGREF1_uc002ris.2_Nonsense_Mutation_p.W297*	NM_006569	NP_006560	Q99674	CGRE1_HUMAN	cell growth regulator with EF-hand domain 1	296					cell adhesion|cell cycle arrest|negative regulation of cell proliferation|response to stress	extracellular region	calcium ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CATCATTCTCCACTTGAACAA	0.502													122	67					0	0	0.003610	0	0
C2orf16	84226	broad.mit.edu	37	2	27801308	27801308	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:27801308A>C	uc002rkz.3	+	1	1920	c.1869A>C	c.(1867-1869)GAA>GAC	p.E623D		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	623										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					TAGCCCTAGAATCAGGAATTG	0.423													34	21					0	0	0.003271	0	0
ALK	238	broad.mit.edu	37	2	29498286	29498286	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:29498286G>A	uc002rmy.2	-	10	2801	c.1894C>T	c.(1894-1896)CTG>TTG	p.L632L		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	632	MAM 2.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	TAGCAGTCCAGGCTGATGGAG	0.562			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				22	13					0	0	0.001882	0	0
YPEL5	51646	broad.mit.edu	37	2	30379533	30379533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:30379533C>T	uc002rna.3	+	4	577	c.16C>T	c.(16-18)CTT>TTT	p.L6F	YPEL5_uc002rnb.3_Missense_Mutation_p.L6F|YPEL5_uc002rnc.3_Missense_Mutation_p.L6F|YPEL5_uc002rmz.3_Missense_Mutation_p.L6F|YPEL5_uc010ezn.2_Intron|YPEL5_uc002rnd.2_Missense_Mutation_p.L6F	NM_001127401	NP_001120873	P62699	YPEL5_HUMAN	yippee-like 5	6							peptide-methionine-(S)-S-oxide reductase activity				0	Acute lymphoblastic leukemia(172;0.155)					CAGAATTTTCCTTGATCATAT	0.418													78	46					0	0	0.003610	0	0
CRIM1	51232	broad.mit.edu	37	2	36749303	36749303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:36749303G>A	uc002rpd.2	+	13	2314	c.2275G>A	c.(2275-2277)GAT>AAT	p.D759N		NM_016441	NP_057525	Q9NZV1	CRIM1_HUMAN	cysteine-rich motor neuron 1 precursor	759	Extracellular (Potential).|VWFC 5.				nervous system development|regulation of cell growth	extracellular region|integral to membrane|plasma membrane	insulin-like growth factor binding|insulin-like growth factor receptor activity|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_hematologic(82;0.131)|Acute lymphoblastic leukemia(82;0.154)				TGATGAAGGGGATATATTCCT	0.448													72	36					0	0	0.003610	0	0
ABCG8	64241	broad.mit.edu	37	2	44079832	44079832	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:44079832G>A	uc002rtq.2	+	6	879	c.789G>A	c.(787-789)CGG>CGA	p.R263R	ABCG8_uc010yoa.1_Silent_p.R263R	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	263	ABC transporter.|Cytoplasmic (Potential).		R -> Q (in STSL).		cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				AAGGCAACCGGCTGGTGCTCA	0.582													242	145					0	0	0.003610	0	0
ABCG8	64241	broad.mit.edu	37	2	44102518	44102518	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:44102518G>A	uc002rtq.2	+	11	1812	c.1722G>A	c.(1720-1722)GGG>GGA	p.G574G	ABCG8_uc010yoa.1_Silent_p.G573G	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	574	Helical; Name=5; (Potential).|ABC transmembrane type-2.		G -> R (in STSL).|G -> E (in STSL).		cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				ACCTCGCCGGGGGCTTCATGA	0.602													243	124					0	0	0.003610	0	0
PRKCE	5581	broad.mit.edu	37	2	46237593	46237593	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:46237593G>A	uc002rut.2	+	10	1571	c.1374G>A	c.(1372-1374)AGG>AGA	p.R458R		NM_005400	NP_005391	Q02156	KPCE_HUMAN	protein kinase C, epsilon	458	Protein kinase.				activation of phospholipase C activity|induction of apoptosis|intracellular signal transduction|nerve growth factor receptor signaling pathway|platelet activation	cytosol|endoplasmic reticulum|plasma membrane	ATP binding|enzyme activator activity|metal ion binding|signal transducer activity			lung(4)|ovary(3)|kidney(1)|breast(1)|large_intestine(1)	10		all_hematologic(82;0.155)|Acute lymphoblastic leukemia(82;0.209)	LUSC - Lung squamous cell carcinoma(58;0.171)			CAGAGAAGAGGATTTTGGCTC	0.493													60	25					0	0	0.003610	0	0
BCL11A	53335	broad.mit.edu	37	2	60688537	60688537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:60688537C>T	uc002sae.1	-	4	1738	c.1510G>A	c.(1510-1512)GAG>AAG	p.E504K	BCL11A_uc002sab.2_Missense_Mutation_p.E504K|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.E173K|BCL11A_uc010ypj.1_Missense_Mutation_p.E470K|BCL11A_uc002sad.1_Missense_Mutation_p.E352K|BCL11A_uc002saf.1_Missense_Mutation_p.E470K	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	504	Glu-rich.				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TCCGTCAGctcctcctcctcc	0.448			T	IGH@	B-CLL								86	47					0	0	0.003610	0	0
LOC388955	388955	broad.mit.edu	37	2	63849372	63849372	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:63849372C>T	uc002sck.1	-	1	788	c.594G>A	c.(592-594)AAG>AAA	p.K198K		NR_003131				SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;												0						GGTCCTTGGCCTTCTCTGTAG	0.587													7	1					0	0	0.001984	0	0
DYSF	8291	broad.mit.edu	37	2	71896816	71896816	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:71896816G>A	uc002sie.2	+	50	5983	c.5607G>A	c.(5605-5607)TGG>TGA	p.W1869*	DYSF_uc010feg.2_Nonsense_Mutation_p.W1900*|DYSF_uc010feh.2_Nonsense_Mutation_p.W1876*|DYSF_uc002sig.3_Nonsense_Mutation_p.W1855*|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Nonsense_Mutation_p.W1890*|DYSF_uc010fef.2_Nonsense_Mutation_p.W1907*|DYSF_uc010fei.2_Nonsense_Mutation_p.W1886*|DYSF_uc010fek.2_Nonsense_Mutation_p.W1887*|DYSF_uc010fej.2_Nonsense_Mutation_p.W1877*|DYSF_uc010fel.2_Nonsense_Mutation_p.W1856*|DYSF_uc010feo.2_Nonsense_Mutation_p.W1901*|DYSF_uc010fem.2_Nonsense_Mutation_p.W1891*|DYSF_uc010fen.2_Nonsense_Mutation_p.W1908*|DYSF_uc002sif.2_Nonsense_Mutation_p.W1870*|DYSF_uc010yqy.1_Nonsense_Mutation_p.W750*|DYSF_uc010yqz.1_Nonsense_Mutation_p.W630*	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1869	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						ACTTCAACTGGAGGTTCATTT	0.488													59	32					0	0	0.003610	0	0
VAMP8	8673	broad.mit.edu	37	2	85808710	85808710	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:85808710C>G	uc002spt.3	+	3	296	c.174C>G	c.(172-174)TTC>TTG	p.F58L	VAMP5_uc002spu.1_5'Flank	NM_003761	NP_003752	Q9BV40	VAMP8_HUMAN	vesicle-associated membrane protein 8	58	Cytoplasmic (Potential).|v-SNARE coiled-coil homology.				post-Golgi vesicle-mediated transport	early endosome|integral to membrane|membrane fraction|plasma membrane|secretory granule membrane					0						CTGAGCACTTCAAGACGACAT	0.473													6	96					0	0	0.001168	0	0
MAP4K4	9448	broad.mit.edu	37	2	102490542	102490542	+	Splice_Site	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:102490542A>C	uc002tbg.2	+	23	2691	c.2636_splice	c.e23-2	p.V879_splice	MAP4K4_uc002tbc.2_Splice_Site_p.V960_splice|MAP4K4_uc002tbd.2_Splice_Site_p.V852_splice|MAP4K4_uc002tbe.2_Splice_Site_p.V798_splice|MAP4K4_uc002tbf.2_Splice_Site_p.V913_splice|MAP4K4_uc010yvy.1_Splice_Site_p.V875_splice|MAP4K4_uc002tbh.2_Splice_Site_p.V797_splice|MAP4K4_uc002tbi.2_Splice_Site_p.V682_splice|MAP4K4_uc010yvz.1_Splice_Site_p.V919_splice|MAP4K4_uc002tbk.2_Splice_Site_p.V334_splice|MAP4K4_uc002tbl.2_Splice_Site_p.V65_splice	NM_145687	NP_663720	O95819	M4K4_HUMAN	mitogen-activated protein kinase kinase kinase						intracellular protein kinase cascade|regulation of JNK cascade|response to stress	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	4						ATTGTGTTTCAGTGGGATTTT	0.428													21	11					0	0	0.002780	0	0
SLC9A2	6549	broad.mit.edu	37	2	103281594	103281594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:103281594G>A	uc002tca.2	+	3	931	c.789G>A	c.(787-789)ATG>ATA	p.M263I		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	263	Extracellular (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TTTGCCAGATGAAAACCATTG	0.463													84	53					0	0	0.003610	0	0
RGPD3	653489	broad.mit.edu	37	2	107029659	107029659	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:107029659A>C	uc010ywi.1	-	22	5204	c.5147T>G	c.(5146-5148)GTC>GGC	p.V1716G		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1716	GRIP.				intracellular transport		binding			ovary(1)	1						CTGCAGCAAGACGTTCTTCAA	0.408													105	53					0	0	0.003610	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460333	107460333	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:107460333T>C	uc002tdq.2	-	2	220	c.101A>G	c.(100-102)AAC>AGC	p.N34S	ST6GAL2_uc002tdr.2_Missense_Mutation_p.N34S|ST6GAL2_uc002tds.3_Missense_Mutation_p.N34S	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	34	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CTCAGCGGGGTTGCTGTCGGT	0.562													32	17					0	0	0.002096	0	0
RGPD4	285190	broad.mit.edu	37	2	108479151	108479151	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:108479151T>C	uc010ywk.1	+	16	2301	c.2219T>C	c.(2218-2220)CTG>CCG	p.L740P	RGPD4_uc002tdu.2_5'UTR|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	740					intracellular transport		binding			skin(2)	2						CCTGTGCCCCTGGAGTCTGTA	0.328													3	118					0	0	0.000248	0	0
RGPD4	285190	broad.mit.edu	37	2	108488331	108488331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:108488331G>A	uc010ywk.1	+	20	3953	c.3871G>A	c.(3871-3873)GGA>AGA	p.G1291R	RGPD4_uc002tdu.2_Missense_Mutation_p.G478R|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1291					intracellular transport		binding			skin(2)	2						GTCAACAACAGGATCTAACTT	0.413													237	117					0	0	0.003610	0	0
RGPD4	285190	broad.mit.edu	37	2	108489210	108489210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:108489210G>A	uc010ywk.1	+	20	4832	c.4750G>A	c.(4750-4752)GAA>AAA	p.E1584K	RGPD4_uc002tdu.2_Missense_Mutation_p.E771K|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1584					intracellular transport		binding			skin(2)	2						TAACAACAGTGAAACTAGTTC	0.368													219	141					0	0	0.003610	0	0
TFCP2L1	29842	broad.mit.edu	37	2	121991770	121991770	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:121991770C>T	uc002tmx.2	-	12	1188	c.1095G>A	c.(1093-1095)CGG>CGA	p.R365R	TFCP2L1_uc010flr.2_Silent_p.R365R|TFCP2L1_uc010flq.2_RNA	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	365					female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					GCCTCACATTCCTGGCAGGAG	0.507													45	16					0	0	0.002852	0	0
Unknown	0	broad.mit.edu	37	2	131459903	131459903	+	RNA	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:131459903C>T	uc010zan.1	+	3		c.428C>T								Homo sapiens cDNA FLJ30428 fis, clone BRACE2008941.																		CTGATTTCACCACAAGCAACT	0.473													6	2					0	0	0.004482	0	0
GPR148	344561	broad.mit.edu	37	2	131486883	131486883	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:131486883C>T	uc002trv.1	+	1	161	c.159C>T	c.(157-159)TTC>TTT	p.F53F		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	53	Helical; Name=1; (Potential).			CMPQAASNTSLGLGDLRVPSSMLYWLFLPSSLLAAA -> S S (in Ref. 2; AAP34196).		integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					ACTGGCTTTTCCTTCCCTCAA	0.632													32	18					0	0	0.002096	0	0
ARHGEF4	50649	broad.mit.edu	37	2	131798931	131798931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:131798931G>A	uc002tsa.1	+	9	1753	c.1233G>A	c.(1231-1233)ATG>ATA	p.M411I	ARHGEF4_uc010fmw.1_Intron|ARHGEF4_uc002tsb.1_Missense_Mutation_p.M411I|ARHGEF4_uc010fmx.1_Missense_Mutation_p.M351I|ARHGEF4_uc002tsc.1_5'UTR	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	411	DH.				apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		TGCAGAAGATGATTGACATCT	0.587													38	22					0	0	0.004878	0	0
POTEE	445582	broad.mit.edu	37	2	131976359	131976359	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:131976359C>T	uc002tsn.2	+	1	436	c.384C>T	c.(382-384)TTC>TTT	p.F128F	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	128							ATP binding				0						ACAGCGCCTTCATGGAGCCCA	0.597													59	33					0	0	0.003610	0	0
LOC401010	401010	broad.mit.edu	37	2	132201266	132201266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:132201266C>T	uc002tst.2	-	1	1202	c.736G>A	c.(736-738)GAA>AAA	p.E246K		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						ACAGACGTTTCCTTCTTGCGG	0.612													22	16					0	0	0.001882	0	0
LCT	3938	broad.mit.edu	37	2	136575460	136575460	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:136575460G>A	uc002tuu.1	-	6	1169	c.1158C>T	c.(1156-1158)TTC>TTT	p.F386F		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	386	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		CACCCCAGAGGAAGCCTTCAG	0.597													81	32					0	0	0.003610	0	0
THSD7B	80731	broad.mit.edu	37	2	138413199	138413199	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:138413199C>T	uc002tva.1	+	21	3987	c.3987C>T	c.(3985-3987)ATC>ATT	p.I1329I	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AGGACAGCATCCTGAAGCAGC	0.498													20	8					0	0	0.002780	0	0
THSD7B	80731	broad.mit.edu	37	2	138421074	138421074	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:138421074G>A	uc002tva.1	+	25	4493	c.4493G>A	c.(4492-4494)GGG>GAG	p.G1498E	THSD7B_uc010zbj.1_RNA	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AACCTTTCTGGGAAAAACAGA	0.363													9	4					0	0	0.004482	0	0
LRP1B	53353	broad.mit.edu	37	2	142567858	142567858	+	Silent	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:142567858A>G	uc002tvj.1	-	2	1167	c.195T>C	c.(193-195)TCT>TCC	p.S65S	LRP1B_uc010fnl.1_Silent_p.S102S	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	65	Extracellular (Potential).|LDL-receptor class A 1.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGGTATCTAAAGACTCGTCTG	0.458										TSP Lung(27;0.18)			27	16					0	0	0.006320	0	0
NEB	4703	broad.mit.edu	37	2	152410459	152410459	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:152410459C>T	uc010fnx.2	-	98	14597	c.14406G>A	c.(14404-14406)AAG>AAA	p.K4802K	NEB_uc002txr.2_Silent_p.K1225K	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4802	Nebulin 131.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TCTGGGAATCCTTGGCAGTAA	0.453													86	53					0	0	0.003610	0	0
FAP	2191	broad.mit.edu	37	2	163044759	163044759	+	Silent	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:163044759A>C	uc002ucd.2	-	20	1942	c.1734T>G	c.(1732-1734)GCT>GCG	p.A578A	FAP_uc010fpc.2_Silent_p.A127A|FAP_uc010zct.1_Silent_p.A553A|FAP_uc010fpd.2_Silent_p.A57A	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	578	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						CACCTTGGAAAGCTGTTCCTC	0.443													77	34					0	0	0.003610	0	0
SCN3A	6328	broad.mit.edu	37	2	165970408	165970408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:165970408C>T	uc002ucx.2	-	20	4079	c.3587G>A	c.(3586-3588)CGA>CAA	p.R1196Q	SCN3A_uc002ucy.2_Missense_Mutation_p.R1147Q|SCN3A_uc002ucz.2_Missense_Mutation_p.R1147Q|SCN3A_uc002uda.1_Missense_Mutation_p.R1016Q|SCN3A_uc002udb.1_Missense_Mutation_p.R1016Q	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1196						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	GCAGGTTTTTCGAAGATTCCA	0.333													74	39					0	0	0.003610	0	0
SCN7A	6332	broad.mit.edu	37	2	167262489	167262489	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:167262489G>A	uc002udu.1	-	25	4777	c.4650C>T	c.(4648-4650)TTC>TTT	p.F1550F		NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	1550					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						GTTTTGCCATGAAAAGAGGAG	0.438													65	30					0	0	0.003610	0	0
LRP2	4036	broad.mit.edu	37	2	170029621	170029621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:170029621C>T	uc002ues.2	-	57	11341	c.11128G>A	c.(11128-11130)GAT>AAT	p.D3710N		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3710	LDL-receptor class A 30.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CCTTGCTCATCACTGTTGTCC	0.498													36	18					0	0	0.008740	0	0
TTN	7273	broad.mit.edu	37	2	179464508	179464508	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:179464508T>C	uc010zfg.1	-	238	48640	c.48416A>G	c.(48415-48417)AAA>AGA	p.K16139R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K9834R|TTN_uc010zfi.1_Missense_Mutation_p.K9767R|TTN_uc010zfj.1_Missense_Mutation_p.K9642R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17066							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCTTTAATTTTGGCCACAAT	0.383													60	31					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179585223	179585223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:179585223C>T	uc010zfg.1	-	77	19758	c.19534G>A	c.(19534-19536)GAT>AAT	p.D6512N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D3173N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7439							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGACTTGTATCAAAATGTTTT	0.393													53	25					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179590133	179590133	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:179590133C>G	uc010zfg.1	-	68	17290	c.17066G>C	c.(17065-17067)GGT>GCT	p.G5689A	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G2350A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6616							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTCATTCCACCATCATTCTT	0.358													4	6					0	0	0.003163	0	0
TTN	7273	broad.mit.edu	37	2	179590143	179590143	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:179590143T>G	uc010zfg.1	-	68	17280	c.17056A>C	c.(17056-17058)AAG>CAG	p.K5686Q	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.K2347Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6613							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCATCATTCTTGATTTGGCAG	0.373													7	7					0	0	0.007413	0	0
TTN	7273	broad.mit.edu	37	2	179594491	179594491	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:179594491G>A	uc010zfg.1	-	60	14981	c.14757C>T	c.(14755-14757)TTC>TTT	p.F4919F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F1580F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5846							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGAAATCTGGAAAGTGGCTA	0.458													84	44					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179597667	179597667	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:179597667G>A	uc010zfg.1	-	52	12728	c.12504C>T	c.(12502-12504)GCC>GCT	p.A4168A	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.A829A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5095							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTCCAAAGAGGCTGTGCCTT	0.483													29	14					0	0	0.006320	0	0
TTN	7273	broad.mit.edu	37	2	179597678	179597678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:179597678C>T	uc010zfg.1	-	52	12717	c.12493G>A	c.(12493-12495)GAA>AAA	p.E4165K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E826K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5092							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTGTGCCTTCCACAAATGCT	0.483													27	13					0	0	0.004656	0	0
TTN	7273	broad.mit.edu	37	2	179610475	179610475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:179610475C>T	uc002unb.2	-	46	16876	c.16652G>A	c.(16651-16653)GGA>GAA	p.G5551E	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	9021							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACTAATTTTCCATCTTTGTA	0.413													54	27					0	0	0.003610	0	0
CCDC141	285025	broad.mit.edu	37	2	179714852	179714852	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:179714852A>C	uc002unf.1	-	11	1613	c.1556T>G	c.(1555-1557)GTG>GGG	p.V519G		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	519							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			GTGTTTTGTCACTATTTTCTC	0.368													36	29					0	0	0.006999	0	0
AOX1	316	broad.mit.edu	37	2	201468806	201468806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:201468806C>T	uc002uvx.2	+	8	756	c.655C>T	c.(655-657)CCT>TCT	p.P219S		NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	219					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	ACTGATATTTCCTCCTGAGCT	0.383													27	17					0	0	0.005443	0	0
ICA1L	130026	broad.mit.edu	37	2	203693702	203693702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:203693702C>T	uc002uzh.1	-	3	195	c.31G>A	c.(31-33)GAT>AAT	p.D11N	ICA1L_uc002uzi.1_Missense_Mutation_p.D11N|ICA1L_uc002uzj.2_Missense_Mutation_p.D11N|ICA1L_uc002uzk.1_Missense_Mutation_p.D11N	NM_138468	NP_612477	Q8NDH6	ICA1L_HUMAN	islet cell autoantigen 1,69kDa-like isoform 1	11											0						GACTGATTATCTTCTGGTCTG	0.333													278	145					0	0	0.003610	0	0
ZDBF2	57683	broad.mit.edu	37	2	207172424	207172424	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:207172424C>G	uc002vbp.2	+	5	3422	c.3172C>G	c.(3172-3174)CTA>GTA	p.L1058V		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1058							nucleic acid binding|zinc ion binding			ovary(3)	3						CCAACCTCAACTAGCTTTTTT	0.333													50	28					0	0	0.003610	0	0
MAP2	4133	broad.mit.edu	37	2	210557362	210557362	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:210557362C>T	uc002vde.1	+	7	716	c.468C>T	c.(466-468)GCC>GCT	p.A156A	MAP2_uc002vdc.1_Silent_p.A156A|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Silent_p.A152A	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	156					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	TACTTACAGCCTCGAAGATGG	0.393													28	18					0	0	0.004656	0	0
ERBB4	2066	broad.mit.edu	37	2	212812239	212812239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:212812239C>T	uc002veg.1	-	3	435	c.337G>A	c.(337-339)GAT>AAT	p.D113N	ERBB4_uc002veh.1_Missense_Mutation_p.D113N|ERBB4_uc010zji.1_Missense_Mutation_p.D113N|ERBB4_uc010zjj.1_Missense_Mutation_p.D113N|ERBB4_uc010fut.1_Missense_Mutation_p.D113N	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	113	Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		GCATATCGATCCTCATAAAGT	0.383										TSP Lung(8;0.080)			39	14					0	0	0.006999	0	0
SMARCAL1	50485	broad.mit.edu	37	2	217297570	217297570	+	Silent	SNP	C	T	T	rs139469074		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:217297570C>T	uc002vgc.3	+	8	1794	c.1464C>T	c.(1462-1464)TCC>TCT	p.S488S	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Silent_p.S488S|SMARCAL1_uc010fvg.2_Silent_p.S488S	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	488	Helicase ATP-binding.				chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		TGCCATCCTCCGTGCGCTTCA	0.517									Schimke_Immuno-Osseous_Dysplasia				72	48					0	0	0.003610	0	0
PLCD4	84812	broad.mit.edu	37	2	219487534	219487534	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:219487534G>A	uc002vij.1	+	6	900	c.705G>A	c.(703-705)CAG>CAA	p.Q235Q	PLCD4_uc002vik.1_Silent_p.Q82Q|PLCD4_uc010zkk.1_Intron	NM_032726	NP_116115	Q9BRC7	PLCD4_HUMAN	phospholipase C, delta 4	235	EF-hand 3.				intracellular signal transduction|lipid catabolic process	endoplasmic reticulum|membrane|nucleus	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)	3		Renal(207;0.0915)		Epithelial(149;5.11e-07)|all cancers(144;0.000104)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		AAGAGGAGCAGAAGGAGAGAG	0.483													93	31					0	0	0.003610	0	0
SLC4A3	6508	broad.mit.edu	37	2	220496989	220496989	+	Silent	SNP	C	T	T	rs145141849	byFrequency	TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:220496989C>T	uc002vmp.3	+	8	1235	c.966C>T	c.(964-966)TTC>TTT	p.F322F	SLC4A3_uc002vmo.3_Silent_p.F349F|SLC4A3_uc010fwm.2_5'UTR|SLC4A3_uc010fwn.1_5'UTR	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	322	Cytoplasmic.				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCCAGGTGTTCGTGGAGCTGA	0.672													41	23					0	0	0.007835	0	0
COL4A4	1286	broad.mit.edu	37	2	228012173	228012173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:228012173C>T	uc010zlt.1	-	2	681	c.27G>A	c.(25-27)ATG>ATA	p.M9I		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	9					axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		AGGAGCACCTCATTAGTACTA	0.428													203	93					0	0	0.003610	0	0
COL4A3	1285	broad.mit.edu	37	2	228118844	228118844	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:228118844A>G	uc002vom.1	+	14	944	c.782A>G	c.(781-783)AAG>AGG	p.K261R	COL4A3_uc002von.1_Missense_Mutation_p.K261R|COL4A3_uc002voo.1_Missense_Mutation_p.K261R|COL4A3_uc002vop.1_Missense_Mutation_p.K261R|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	261	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		AAGGGGGAAAAGGGAGACAAG	0.433													4	99					0	0	0.000602	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881727	228881727	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:228881727G>A	uc002vpq.2	-	7	3890	c.3843C>T	c.(3841-3843)TCC>TCT	p.S1281S	SPHKAP_uc002vpp.2_Silent_p.S1281S|SPHKAP_uc010zlx.1_Silent_p.S1281S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1281						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GACCGGATGAGGACGCGCTAC	0.507													38	25					0	0	0.008740	0	0
SP140	11262	broad.mit.edu	37	2	231103041	231103041	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:231103041G>A	uc002vql.2	+	3	466	c.351G>A	c.(349-351)AGG>AGA	p.R117R	SP140_uc010zma.1_RNA|SP140_uc002vqj.2_Silent_p.R117R|SP140_uc002vqk.2_Silent_p.R117R|SP140_uc002vqn.2_Silent_p.R117R|SP140_uc002vqm.2_Silent_p.R117R|SP140_uc010fxl.2_Silent_p.R117R	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	117	HSR.				defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		TGTTCAGCAGGATTAACCTGA	0.428													39	19					0	0	0.006999	0	0
SP140L	93349	broad.mit.edu	37	2	231256831	231256831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:231256831G>A	uc010fxm.1	+	12	1085	c.994G>A	c.(994-996)GAT>AAT	p.D332N	SP140L_uc010fxo.1_Missense_Mutation_p.D104N	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	332	SAND.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						ACAGACTGAGGATGGAAAATG	0.527													69	24					0	0	0.003610	0	0
AGAP1	116987	broad.mit.edu	37	2	236706445	236706445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:236706445C>T	uc002vvs.2	+	7	1311	c.716C>T	c.(715-717)TCC>TTC	p.S239F	AGAP1_uc002vvt.2_Missense_Mutation_p.S239F	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	239	Small GTPase-like.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						CAGCAGCTGTCCATAGGACCC	0.502													162	86					0	0	0.003610	0	0
COL6A3	1293	broad.mit.edu	37	2	238253051	238253051	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:238253051C>T	uc002vwl.2	-	36	7895	c.7610G>A	c.(7609-7611)GGG>GAG	p.G2537E	COL6A3_uc002vwo.2_Missense_Mutation_p.G2331E|COL6A3_uc010znj.1_Missense_Mutation_p.G1930E|COL6A3_uc002vwj.2_5'Flank|COL6A3_uc002vwp.1_Missense_Mutation_p.G358E	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2537	VWFA 11.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GGGGGTGATCCCCGCATCTGA	0.537													131	43					0	0	0.003610	0	0
AQP12A	375318	broad.mit.edu	37	2	241631577	241631577	+	Silent	SNP	G	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:241631577G>C	uc002vzu.2	+	2	279	c.210G>C	c.(208-210)GCG>GCC	p.A70A	AQP12A_uc002vzv.2_Intron	NM_198998	NP_945349	Q8IXF9	AQ12A_HUMAN	aquaporin 12A	70	Helical; Name=2; (Potential).					integral to membrane	transporter activity				0		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;2.2e-31)|all cancers(36;1.08e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.52e-06)|Lung(119;0.00163)|LUSC - Lung squamous cell carcinoma(224;0.008)|Colorectal(34;0.0124)|COAD - Colon adenocarcinoma(134;0.0757)		TCTTCCTGGCGCACGGGGTCA	0.667													4	52					0	0	0.008291	0	0
KIF1A	547	broad.mit.edu	37	2	241689893	241689893	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr2:241689893T>G	uc002vzy.2	-	26	2773	c.2627A>C	c.(2626-2628)AAG>ACG	p.K876T	KIF1A_uc010fzk.2_Missense_Mutation_p.K977T|KIF1A_uc002vzz.1_Missense_Mutation_p.K977T	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	876					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CACCTCGCCCTTCTCGCTGAC	0.657													17	14					0	0	0.006122	0	0
TGM6	343641	broad.mit.edu	37	20	2375916	2375916	+	Silent	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:2375916A>C	uc002wfy.1	+	3	319	c.258A>C	c.(256-258)ACA>ACC	p.T86T	TGM6_uc010gal.1_Silent_p.T86T	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	86					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	AGGGCTGGACAGCAGCAAGGG	0.612													9	21					0	0	0.004482	0	0
C20orf141	128653	broad.mit.edu	37	20	2796002	2796002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:2796002G>A	uc010gat.2	+	2	255	c.172G>A	c.(172-174)GGA>AGA	p.G58R	C20orf141_uc002wgv.1_Missense_Mutation_p.G58R|C20orf141_uc002wgw.2_Missense_Mutation_p.G58R|uc002wgx.1_5'Flank|uc002wgy.1_5'Flank	NM_080739	NP_542777	Q9NUB4	CT141_HUMAN	hypothetical protein LOC128653	58	Leu-rich.					integral to membrane					0						GGGGGCACTAGGACTGACAAT	0.612													42	98					0	0	0.003214	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3683845	3683845	+	Silent	SNP	G	A	A	rs143886579		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:3683845G>A	uc002wja.2	-	5	1227	c.1227C>T	c.(1225-1227)AAC>AAT	p.N409N	SIGLEC1_uc002wiz.3_Silent_p.N409N|SIGLEC1_uc002wjc.2_Silent_p.N320N	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	409	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						GCCTCTTACGGTTGACTACCA	0.612													15	27					0	0	0.006122	0	0
PROKR2	128674	broad.mit.edu	37	20	5282768	5282768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:5282768C>T	uc010zqw.1	-	2	1073	c.1073G>A	c.(1072-1074)GGG>GAG	p.G358E	PROKR2_uc010zqx.1_Missense_Mutation_p.G358E|PROKR2_uc010zqy.1_Missense_Mutation_p.G358E	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	358	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GGACTTGCTCCCCCGCTGGGA	0.547										HNSCC(71;0.22)			16	59					0	0	0.004990	0	0
PLCB1	23236	broad.mit.edu	37	20	8698405	8698405	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:8698405G>A	uc002wnb.2	+	14	1426	c.1423G>A	c.(1423-1425)GAA>AAA	p.E475K	PLCB1_uc010zrb.1_Missense_Mutation_p.E374K|PLCB1_uc002wna.2_Missense_Mutation_p.E475K|PLCB1_uc002wnc.1_Missense_Mutation_p.E374K|PLCB1_uc002wnd.1_Missense_Mutation_p.E52K	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	475					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CAAGTCATCAGAAGGAAGCGG	0.453													30	53					0	0	0.007291	0	0
PLCB4	5332	broad.mit.edu	37	20	9440329	9440329	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:9440329C>T	uc002wnf.2	+	33	3220	c.3084C>T	c.(3082-3084)ATC>ATT	p.I1028I	PLCB4_uc010gbx.2_Silent_p.I1040I|PLCB4_uc002wne.2_Silent_p.I1028I|PLCB4_uc002wnh.2_Silent_p.I875I	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	1028					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CAGAAATGATCAATACCCACA	0.483													7	27					0	0	0.003080	0	0
PAK7	57144	broad.mit.edu	37	20	9538374	9538374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:9538374C>T	uc002wnl.2	-	8	2169	c.1624G>A	c.(1624-1626)GAA>AAA	p.E542K	PAK7_uc002wnk.2_Missense_Mutation_p.E542K|PAK7_uc002wnj.2_Missense_Mutation_p.E542K|PAK7_uc010gby.1_Missense_Mutation_p.E542K	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	542	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			ATCTGTTCTTCATTCATTCTG	0.413													18	38					0	0	0.007413	0	0
PAK7	57144	broad.mit.edu	37	20	9560815	9560815	+	Missense_Mutation	SNP	C	T	T	rs143654195		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:9560815C>T	uc002wnl.2	-	5	1512	c.967G>A	c.(967-969)GAG>AAG	p.E323K	PAK7_uc002wnk.2_Missense_Mutation_p.E323K|PAK7_uc002wnj.2_Missense_Mutation_p.E323K|PAK7_uc010gby.1_Missense_Mutation_p.E323K	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	323	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			ATTGTGGGCTCGGACAAGCGA	0.522													73	180					0	0	0.003610	0	0
PAK7	57144	broad.mit.edu	37	20	9624959	9624959	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:9624959C>T	uc002wnl.2	-	4	563	c.18G>A	c.(16-18)AAG>AAA	p.K6K	PAK7_uc002wnk.2_Silent_p.K6K|PAK7_uc002wnj.2_Silent_p.K6K|PAK7_uc010gby.1_Silent_p.K6K	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	6							ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CAATCTTTTTCTTTTTCTTCC	0.438													10	35					0	0	0.001855	0	0
SPTLC3	55304	broad.mit.edu	37	20	13134660	13134660	+	Silent	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:13134660A>G	uc002wod.1	+	10	1579	c.1290A>G	c.(1288-1290)AGA>AGG	p.R430R		NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	430					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	GGCTGCAGAGAGTACAGCAAC	0.433													27	63					0	0	0.002096	0	0
SEL1L2	80343	broad.mit.edu	37	20	13845827	13845827	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:13845827C>T	uc010gcf.2	-	17	1713	c.1631G>A	c.(1630-1632)CGA>CAA	p.R544Q	SEL1L2_uc002woq.3_Missense_Mutation_p.R405Q|SEL1L2_uc010zrl.1_Missense_Mutation_p.E489K|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	544	Extracellular (Potential).					integral to membrane	binding			ovary(2)	2						AATGGCAGCTCGATTCCATAG	0.428													33	85					0	0	0.004878	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060247	35060247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:35060247G>A	uc002xff.2	+	3	562	c.127G>A	c.(127-129)GAG>AAG	p.E43K	DLGAP4_uc010zvp.1_Missense_Mutation_p.E43K	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	43					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CTTCGCCCGCGAGGCCCGCTT	0.687													16	26					0	0	0.004990	0	0
DSN1	79980	broad.mit.edu	37	20	35399459	35399459	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:35399459T>C	uc010gfr.2	-	3	545	c.172A>G	c.(172-174)AGC>GGC	p.S58G	DSN1_uc002xfz.2_Missense_Mutation_p.S58G|DSN1_uc002xfy.3_Intron|DSN1_uc002xga.2_Missense_Mutation_p.S58G|DSN1_uc010zvs.1_Intron|DSN1_uc002xgc.2_Missense_Mutation_p.S42G|DSN1_uc002xgb.2_Missense_Mutation_p.S42G	NM_001145316	NP_001138788	Q9H410	DSN1_HUMAN	DSN1, MIND kinetochore complex component,	58					cell division|chromosome segregation|mitotic prometaphase	cytosol|MIS12/MIND type complex|nucleus	protein binding			ovary(2)	2		Myeloproliferative disorder(115;0.00874)				TTTTTAGGGCTAGAGCCAAGG	0.448													66	128					0	0	0.003610	0	0
SAMHD1	25939	broad.mit.edu	37	20	35526843	35526843	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:35526843C>T	uc002xgh.1	-	14	1738	c.1608G>A	c.(1606-1608)CAG>CAA	p.Q536Q	SAMHD1_uc010gft.1_Intron	NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	536					defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				AAGTAGTTACCTGGTTTTTAG	0.323													31	74					0	0	0.008361	0	0
LBP	3929	broad.mit.edu	37	20	36997662	36997662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:36997662G>A	uc002xic.1	+	10	1040	c.1005G>A	c.(1003-1005)ATG>ATA	p.M335I		NM_004139	NP_004130	P18428	LBP_HUMAN	lipopolysaccharide-binding protein precursor	335					acute-phase response|cellular defense response|cellular response to lipoteichoic acid|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|detection of molecule of bacterial origin|innate immune response|lipid transport|lipopolysaccharide transport|lipopolysaccharide-mediated signaling pathway|macrophage activation involved in immune response|negative regulation of tumor necrosis factor production|opsonization|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of macrophage activation|positive regulation of respiratory burst involved in inflammatory response|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of tumor necrosis factor production|Toll signaling pathway	extracellular space	Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|lipid binding|lipopolysaccharide binding|lipoteichoic acid binding|receptor binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				ACCCCAACATGAACCTGGAAC	0.507													38	66					0	0	0.004878	0	0
CD40	958	broad.mit.edu	37	20	44757560	44757560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:44757560C>T	uc002xrg.1	+	9	792	c.715C>T	c.(715-717)CCC>TCC	p.P239S	CD40_uc002xrh.1_3'UTR|CD40_uc002xri.1_3'UTR|CD40_uc002xrj.1_RNA|CD40_uc002xrk.1_RNA|CD40_uc002xrl.1_RNA	NM_001250	NP_001241	P25942	TNR5_HUMAN	CD40 antigen isoform 1 precursor	239	Cytoplasmic (Potential).				B cell proliferation|cellular response to mechanical stimulus|inflammatory response|platelet activation|positive regulation of endothelial cell apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein complex assembly	CD40 receptor complex|extracellular region	enzyme binding|receptor activity			lung(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)			Simvastatin(DB00641)	GATCAATTTTCCCGACGATCT	0.607									Immune_Deficiency_with_Hyper-IgM		OREG0025991	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	43					0	0	0.004990	0	0
ZNF334	55713	broad.mit.edu	37	20	45131369	45131369	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:45131369C>T	uc002xsc.2	-	5	793	c.609G>A	c.(607-609)CAG>CAA	p.Q203Q	ZNF334_uc002xsa.2_Silent_p.Q226Q|ZNF334_uc002xsb.2_Silent_p.Q165Q|ZNF334_uc002xsd.2_Silent_p.Q165Q|ZNF334_uc010ghl.2_Silent_p.Q202Q	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	203					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				GTTTCAAAATCTGAATGTTCT	0.363													34	63					0	0	0.006230	0	0
EYA2	2139	broad.mit.edu	37	20	45633618	45633618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:45633618G>A	uc002xsm.2	+	4	567	c.193G>A	c.(193-195)GCC>ACC	p.A65T	EYA2_uc010ghp.2_Missense_Mutation_p.A65T|EYA2_uc002xsn.2_Missense_Mutation_p.A70T|EYA2_uc002xso.2_Missense_Mutation_p.A65T|EYA2_uc002xsp.2_Missense_Mutation_p.A65T|EYA2_uc002xsq.2_Missense_Mutation_p.A65T	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	65					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				GCCTTCCACAGCCATGGCAGC	0.577													34	89					0	0	0.006230	0	0
SLC9A8	23315	broad.mit.edu	37	20	48481306	48481307	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:48481306_48481307CC>TT	uc002xuv.1	+	10	1093_1094	c.883_884CC>TT	c.(883-885)CCT>TTT	p.P295F	SLC9A8_uc010zym.1_5'UTR|SLC9A8_uc010gic.2_5'UTR|SLC9A8_uc010gid.2_5'UTR	NM_015266	NP_056081	Q9Y2E8	SL9A8_HUMAN	sodium/hydrogen exchanger 8	295						Golgi membrane|integral to membrane	sodium:hydrogen antiporter activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;3.91e-07)			GAGGAAAACGCCTTCCTTGGAG	0.45													16	64					0	0	0.004672	0	0
MC3R	4159	broad.mit.edu	37	20	54824259	54824259	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:54824259C>T	uc002xxb.2	+	1	472	c.360C>T	c.(358-360)TTC>TTT	p.F120F		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	157	Helical; Name=3; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			ACAACATCTTCGACTCCATGA	0.552													20	82					0	0	0.001882	0	0
GNAS	2778	broad.mit.edu	37	20	57429123	57429123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:57429123C>T	uc002xzw.2	+	1	1088	c.803C>T	c.(802-804)CCC>CTC	p.P268L	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			CGCCTCACTCCCGCCGCGAAC	0.692			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			4	22					0	0	0.000248	0	0
ZNF831	128611	broad.mit.edu	37	20	57829627	57829627	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:57829627C>T	uc002yan.2	+	5	4863	c.4863C>T	c.(4861-4863)ATC>ATT	p.I1621I		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1621						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CTGGATTAATCACTCGGAAAG	0.488													27	83					0	0	0.006320	0	0
LAMA5	3911	broad.mit.edu	37	20	60889937	60889937	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:60889937A>C	uc002ycq.2	-	60	8181	c.8114T>G	c.(8113-8115)GTG>GGG	p.V2705G		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	2705	Domain II and I.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGCGTTGTGCACCCCACGGTT	0.672													36	69					0	0	0.003271	0	0
DPH3B	100132911	broad.mit.edu	37	20	61477088	61477088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:61477088C>T	uc011aan.1	+	1	613	c.73C>T	c.(73-75)CCC>TCC	p.P25S	TCFL5_uc002ydo.2_Intron|TCFL5_uc002ydp.2_Intron	NM_080750	NP_542788	Q9H4G8	DPH3B_HUMAN	DPH3B, KTI11 homolog B	25	DPH-type.						metal ion binding				0						ATATTTCTGTCCCTGCCCATG	0.507													8	27					0	0	0.004482	0	0
NPBWR2	2832	broad.mit.edu	37	20	62737326	62737326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr20:62737326C>T	uc011abt.1	-	1	859	c.859G>A	c.(859-861)GAC>AAC	p.D287N		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	287	Extracellular (Potential).					plasma membrane	opioid receptor activity|protein binding			large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					TGGGGCAGGTCCGTGGTCAGG	0.637													17	39					0	0	0.001523	0	0
TPTE	7179	broad.mit.edu	37	21	10934997	10934997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:10934997C>T	uc002yip.1	-	15	1164	c.796G>A	c.(796-798)GAA>AAA	p.E266K	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.E248K|TPTE_uc002yir.1_Missense_Mutation_p.E228K|TPTE_uc010gkv.1_Missense_Mutation_p.E128K	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	266	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CGCACAACTTCCTAAAAAAGA	0.333													11	113					0	0	0.000978	0	0
TPTE	7179	broad.mit.edu	37	21	10951345	10951345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:10951345G>A	uc002yip.1	-	10	735	c.367C>T	c.(367-369)CCT>TCT	p.P123S	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.P105S|TPTE_uc002yir.1_Missense_Mutation_p.P85S|TPTE_uc010gkv.1_5'UTR	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	123					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TACTCCAAAGGAATATAAAGT	0.318													24	103					0	0	0.006320	0	0
POTED	317754	broad.mit.edu	37	21	14982936	14982936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:14982936G>A	uc002yjb.1	+	1	439	c.387G>A	c.(385-387)ATG>ATA	p.M129I		NM_174981	NP_778146	Q86YR6	POTED_HUMAN	pote protein	129						plasma membrane				ovary(3)|skin(3)	6						GCGCCTTCATGGAGCCGAGGT	0.602													33	11					0	0	0.001786	0	0
RNF160	26046	broad.mit.edu	37	21	30338844	30338844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:30338844G>A	uc002ymr.2	-	10	2120	c.2107C>T	c.(2107-2109)CCT>TCT	p.P703S	RNF160_uc010gll.1_RNA	NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	657							ligase activity|zinc ion binding				0						TGCACCGCAGGATTTTTTTGT	0.393													16	37					0	0	0.006122	0	0
CLDN8	9073	broad.mit.edu	37	21	31587917	31587917	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:31587917C>T	uc002ynu.1	-	1	402	c.327G>A	c.(325-327)GGG>GGA	p.G109G		NM_199328	NP_955360	P56748	CLD8_HUMAN	claudin 8	109	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion	endoplasmic reticulum|integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TCTCATTGTCCCCCGTGCACC	0.542													11	19					0	0	0.008291	0	0
KRTAP23-1	337963	broad.mit.edu	37	21	31720772	31720772	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:31720772G>A	uc002yny.1	-	1	153	c.153C>T	c.(151-153)TTC>TTT	p.F51F		NM_181624	NP_853655	A1A580	KR231_HUMAN	keratin associated protein 23-1	51						intermediate filament					0						GCAGAGAGAGGAACCCAGCTG	0.607													11	32					0	0	0.008291	0	0
KRTAP19-8	728299	broad.mit.edu	37	21	32410572	32410572	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:32410572C>T	uc010glt.2	-	1	224	c.191G>A	c.(190-192)TGA>TAA	p.*64*		NM_001099219	NP_001092689	Q3LI54	KR198_HUMAN	keratin associated protein 19-8	64						intermediate filament				upper_aerodigestive_tract(1)	1						GTTCACTCTTCAGTAGAAGGC	0.473													30	76					0	0	0.002836	0	0
GART	2618	broad.mit.edu	37	21	34889366	34889366	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:34889366G>A	uc002yrx.2	-	16	2172	c.2037C>T	c.(2035-2037)GCC>GCT	p.A679A	GART_uc002yrz.2_Silent_p.A679A|GART_uc010gmd.2_Silent_p.A341A|GART_uc002yry.2_Silent_p.A679A	NM_000819	NP_000810	P22102	PUR2_HUMAN	phosphoribosylglycinamide formyltransferase,	679	AIRS.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|metal ion binding|methyltransferase activity|phosphoribosylamine-glycine ligase activity|phosphoribosylformylglycinamidine cyclo-ligase activity|phosphoribosylglycinamide formyltransferase activity|protein binding			ovary(1)	1					Pemetrexed(DB00642)	CAGTAATATGGGCAAAGGCTT	0.458													36	80					0	0	0.003755	0	0
ERG	2078	broad.mit.edu	37	21	39774513	39774513	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:39774513T>A	uc010gnw.2	-	7	955	c.660A>T	c.(658-660)CAA>CAT	p.Q220H	ERG_uc002yxa.2_Missense_Mutation_p.Q213H|ERG_uc011aek.1_Missense_Mutation_p.Q121H|ERG_uc010gnv.2_Missense_Mutation_p.Q121H|ERG_uc010gnx.2_Missense_Mutation_p.Q220H|ERG_uc011ael.1_Missense_Mutation_p.Q220H|ERG_uc002yxb.2_Missense_Mutation_p.Q220H|ERG_uc011aem.1_Intron|ERG_uc002yxc.3_Missense_Mutation_p.Q220H|ERG_uc010gny.1_Intron	NM_001136155	NP_001129627	P11308	ERG_HUMAN	ets-related isoform 4	220					cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		TMPRSS2/ERG(2499)|FUS/ERG(163)|EWSR1/ERG(162)	prostate(2499)|bone(167)|haematopoietic_and_lymphoid_tissue(153)|soft_tissue(5)|lung(2)|skin(1)|ovary(1)	2828		Prostate(19;3.6e-06)				GTGGAGAGTTTTGTAAGGCTT	0.438													18	47					0	0	0.007413	0	0
ABCG1	9619	broad.mit.edu	37	21	43646014	43646014	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:43646014G>A	uc002zaq.2	+	2	382	c.276G>A	c.(274-276)TGG>TGA	p.W92*	ABCG1_uc002zan.2_Nonsense_Mutation_p.W94*|ABCG1_uc002zam.2_Nonsense_Mutation_p.W70*|ABCG1_uc002zao.2_Nonsense_Mutation_p.W89*|ABCG1_uc002zap.2_Nonsense_Mutation_p.W92*|ABCG1_uc002zar.2_Nonsense_Mutation_p.W103*|ABCG1_uc011aev.1_Nonsense_Mutation_p.W103*	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	92	Cytoplasmic (Potential).|ABC transporter.				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	GACCCTGGTGGAGGAAGAAAG	0.473													43	99					0	0	0.003610	0	0
ABCG1	9619	broad.mit.edu	37	21	43704787	43704787	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:43704787C>T	uc002zaq.2	+	7	958	c.852C>T	c.(850-852)TTC>TTT	p.F284F	ABCG1_uc002zan.2_Silent_p.F286F|ABCG1_uc002zam.2_Silent_p.F262F|ABCG1_uc002zao.2_Silent_p.F281F|ABCG1_uc002zap.2_Silent_p.F284F|ABCG1_uc002zar.2_Silent_p.F295F|ABCG1_uc011aev.1_Silent_p.F295F|ABCG1_uc010gpb.1_5'Flank	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	284	Cytoplasmic (Potential).|ABC transporter.				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	TCGAGCTGTTCGACCAGGTAC	0.612													24	76					0	0	0.004656	0	0
TFF1	7031	broad.mit.edu	37	21	43783428	43783428	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:43783428G>A	uc002zax.1	-	2	214	c.174C>T	c.(172-174)TTC>TTT	p.F58F		NM_003225	NP_003216	P04155	TFF1_HUMAN	trefoil factor 1 precursor	58	P-type.				carbohydrate metabolic process|response to estradiol stimulus		growth factor activity				0						CGGTGTCGTCGAAACAGCAGC	0.517													17	45					0	0	0.004007	0	0
SLC37A1	54020	broad.mit.edu	37	21	44000468	44000468	+	Nonstop_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:44000468T>G	uc002zbi.2	+	21	2012	c.1600T>G	c.(1600-1602)TGA>GGA	p.*534G	SLC37A1_uc002zbj.2_Nonstop_Mutation_p.*534G	NM_018964	NP_061837	P57057	GLPT_HUMAN	solute carrier family 37 member 1	534					carbohydrate transport|transmembrane transport	integral to membrane					0						TAAGGAACAGTGACACCCCAC	0.527													7	30					0	0	0.004482	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011572	46011573	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:46011572_46011573GG>AA	uc002zfm.2	-	1	814_815	c.793_794CC>TT	c.(793-795)CCC>TTC	p.P265F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	265	29 X 5 AA repeats of C-C-X(3).					keratin filament					0						GTGCTGGCAGGGGGAGGAGGTG	0.649													35	77					0	0	0.004672	0	0
KRTAP10-8	386681	broad.mit.edu	37	21	46032718	46032718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:46032718C>T	uc002zfo.1	+	1	723	c.701C>T	c.(700-702)TCC>TTC	p.S234F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198695	NP_941968	P60410	KR108_HUMAN	keratin associated protein 10-8	234	19 X 5 AA repeats of C-C-X(3).					keratin filament				large_intestine(1)|breast(1)	2						cctgcctcctcctgccagccc	0.194													11	22					0	0	0.008291	0	0
KRTAP12-2	353323	broad.mit.edu	37	21	46086702	46086702	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:46086702G>A	uc002zfu.2	-	1	143	c.102C>T	c.(100-102)TGC>TGT	p.C34C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181684	NP_859012	P59991	KR122_HUMAN	keratin associated protein 12-2	34	23 X 5 AA approximate repeats.|5.					keratin filament					0						CAGGCACACAGCAGGATGCCT	0.667													11	22					0	0	0.000978	0	0
KRTAP12-1	353332	broad.mit.edu	37	21	46101782	46101782	+	Missense_Mutation	SNP	C	T	T	rs138110019		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:46101782C>T	uc002zfv.2	-	1	297	c.257G>A	c.(256-258)AGA>AAA	p.R86K	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181686	NP_859014	P59990	KR121_HUMAN	keratin associated protein 12-1	86	13.|14 X 5 AA approximate repeats.					keratin filament		p.R86K(1)		skin(2)	2						GGAGATGGGTCTGCAGAGGAC	0.637													21	48					0	0	0.002299	0	0
SLC19A1	6573	broad.mit.edu	37	21	46936041	46936041	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:46936041G>A	uc002zhl.1	-	6	1426	c.1307C>T	c.(1306-1308)TCC>TTC	p.S436F	SLC19A1_uc010gpy.1_Intron|SLC19A1_uc011aft.1_Missense_Mutation_p.S396F|SLC19A1_uc002zhm.1_Intron|SLC19A1_uc010gpz.1_Missense_Mutation_p.S315F	NM_194255	NP_919231	P41440	S19A1_HUMAN	solute carrier family 19 member 1	436	Helical; (Probable).				folic acid metabolic process	integral to plasma membrane|membrane fraction	folic acid binding|folic acid transporter activity|methotrexate transporter activity|reduced folate carrier activity				0				Colorectal(79;0.0569)|READ - Rectum adenocarcinoma(84;0.172)		GAAGTACACGGAGTATAACTG	0.672													13	23					0	0	0.002450	0	0
FTCD	10841	broad.mit.edu	37	21	47566215	47566215	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:47566215G>A	uc002zif.2	-	8	977	c.933C>T	c.(931-933)TCC>TCT	p.S311S	FTCD_uc002zig.2_Silent_p.S311S|FTCD_uc002zih.2_Silent_p.S311S|FTCD_uc010gqf.2_Silent_p.S311S|FTCD_uc010gqg.1_Silent_p.S180S	NM_006657	NP_006648	O95954	FTCD_HUMAN	formiminotransferase cyclodeaminase	311	Formiminotransferase C-subdomain (By similarity).				folic acid-containing compound metabolic process|histidine catabolic process	centriole|cytosol|Golgi apparatus	folic acid binding|formimidoyltetrahydrofolate cyclodeaminase activity|glutamate formimidoyltransferase activity			pancreas(1)|skin(1)	2	Breast(49;0.214)			Colorectal(79;0.235)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	AGGGGCACAGGGAGTCCAGGC	0.687													6	10					0	0	0.001984	0	0
TOP3B	8940	broad.mit.edu	37	22	22322018	22322018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:22322018G>A	uc002zvs.2	-	8	1244	c.809C>T	c.(808-810)GCA>GTA	p.A270V	TOP3B_uc010gtm.1_5'UTR|TOP3B_uc002zvr.2_5'UTR|TOP3B_uc010gtl.2_Missense_Mutation_p.A270V|TOP3B_uc002zvt.3_Missense_Mutation_p.A270V	NM_003935	NP_003926	O95985	TOP3B_HUMAN	topoisomerase (DNA) III beta	270					DNA topological change	nucleus	ATP binding|DNA topoisomerase type I activity|protein binding			kidney(1)	1	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.145)		AAACATCTGTGCGATCTCCCG	0.502													28	67					0	0	0.001786	0	0
CABIN1	23523	broad.mit.edu	37	22	24439440	24439440	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:24439440C>T	uc002zzi.1	+	6	547	c.420C>T	c.(418-420)ATC>ATT	p.I140I	CABIN1_uc002zzj.1_Silent_p.I140I|CABIN1_uc002zzl.1_Silent_p.I140I|CABIN1_uc010guk.1_Silent_p.I95I|CABIN1_uc002zzk.1_Silent_p.I95I	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	140	TPR 3.				cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TCATCCGGATCCCCCTGGCTC	0.547													27	57					0	0	0.005443	0	0
MYO18B	84700	broad.mit.edu	37	22	26231385	26231385	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:26231385C>T	uc003abz.1	+	17	3433	c.3183C>T	c.(3181-3183)TTC>TTT	p.F1061F	MYO18B_uc003aca.1_Silent_p.F942F|MYO18B_uc010guy.1_Silent_p.F943F|MYO18B_uc010guz.1_Silent_p.F942F|MYO18B_uc011aka.1_Silent_p.F215F|MYO18B_uc011akb.1_Silent_p.F574F	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1061	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GTGCTGCTTTCGAGAAGAAAG	0.567													43	77					0	0	0.003214	0	0
MYO18B	84700	broad.mit.edu	37	22	26294333	26294333	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:26294333G>A	uc003abz.1	+	29	4978	c.4728G>A	c.(4726-4728)AGG>AGA	p.R1576R	MYO18B_uc003aca.1_Silent_p.R1457R|MYO18B_uc010guy.1_Silent_p.R1458R|MYO18B_uc010guz.1_Silent_p.R1456R|MYO18B_uc011aka.1_Silent_p.R730R|MYO18B_uc011akb.1_Silent_p.R1089R	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1576	Potential.|Tail.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AACTGAAGAGGAAGTGCCACC	0.493													26	59					0	0	0.004656	0	0
MYO18B	84700	broad.mit.edu	37	22	26299723	26299723	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:26299723G>A	uc003abz.1	+	31	5323	c.5073G>A	c.(5071-5073)TGG>TGA	p.W1691*	MYO18B_uc003aca.1_Nonsense_Mutation_p.W1572*|MYO18B_uc010guy.1_Nonsense_Mutation_p.W1573*|MYO18B_uc010guz.1_Nonsense_Mutation_p.W1571*|MYO18B_uc011aka.1_Nonsense_Mutation_p.W845*|MYO18B_uc011akb.1_Nonsense_Mutation_p.W1204*	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1691	Potential.|Tail.|Gln-rich.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AGAGGCTCTGGAAGTTGGAAT	0.552													5	13					0	0	0.000602	0	0
MTMR3	8897	broad.mit.edu	37	22	30394825	30394825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:30394825C>T	uc003agv.3	+	8	864	c.536C>T	c.(535-537)TCC>TTC	p.S179F	MTMR3_uc003agu.3_Missense_Mutation_p.S179F|MTMR3_uc003agw.3_Missense_Mutation_p.S179F	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	179	Myotubularin phosphatase.				phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			TGGAGGATTTCCAACATCAAT	0.448													12	13					0	0	0.000978	0	0
SEC14L2	23541	broad.mit.edu	37	22	30812060	30812060	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:30812060C>T	uc003ahr.2	+	10	1068	c.895C>T	c.(895-897)CCT>TCT	p.P299S	SEC14L2_uc003ahq.2_Missense_Mutation_p.P299S|SEC14L2_uc011akx.1_Missense_Mutation_p.P245S|SEC14L2_uc003ahs.2_Missense_Mutation_p.P225S|SEC14L2_uc011aky.1_Missense_Mutation_p.P216S|SEC14L2_uc003aht.2_RNA|SEC14L2_uc003ahu.3_Intron|SEC14L2_uc010gvv.2_Intron|SEC14L2_uc010gvw.1_Intron|MTP18_uc010gvx.1_Intron|MTP18_uc003ahv.1_Missense_Mutation_p.P123S|MTP18_uc010gvy.1_Intron	NM_012429	NP_036561	O76054	S14L2_HUMAN	SEC14-like 2 isoform 1	299	GOLD.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	phospholipid binding|transporter activity|vitamin E binding				0					Vitamin E(DB00163)	GATCCTCTTCCCTGGCTGTGT	0.557													34	89					0	0	0.006999	0	0
SLC5A4	6527	broad.mit.edu	37	22	32631037	32631037	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:32631037G>A	uc003ami.2	-	8	710	c.708C>T	c.(706-708)TAC>TAT	p.Y236Y		NM_014227	NP_055042	Q9NY91	SC5A4_HUMAN	solute carrier family 5 (low affinity glucose	236	Extracellular (Potential).				carbohydrate transport|sodium ion transport	integral to membrane	symporter activity				0						TGGCATTCACGTACTTCTCGG	0.468													53	97					0	0	0.003610	0	0
BPIL2	254240	broad.mit.edu	37	22	32853264	32853264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:32853264C>T	uc003amn.2	-	1	110	c.110G>A	c.(109-111)AGG>AAG	p.R37K	BPIL2_uc010gwo.2_5'UTR|BPIL2_uc011amb.1_Intron|BPIL2_uc003amo.3_Missense_Mutation_p.R37K	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing	37						extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						GTCAAGTGCCCTCTGAGTAAT	0.498													8	38					0	0	0.004482	0	0
C22orf33	339669	broad.mit.edu	37	22	37395952	37395952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:37395952G>A	uc003aqf.2	-	4	709	c.563C>T	c.(562-564)CCT>CTT	p.P188L	C22orf33_uc003aqe.2_Missense_Mutation_p.P103L	NM_001163857	NP_001157329	O43247	EAN57_HUMAN	hypothetical protein LOC339669 isoform 1	188											0						GATTTCCACAGGATTCTGGGT	0.542													32	51					0	0	0.003271	0	0
ZC3H7B	23264	broad.mit.edu	37	22	41735092	41735092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:41735092C>T	uc003azw.2	+	9	929	c.713C>T	c.(712-714)GCC>GTC	p.A238V	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	254					interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						GACCTGCTGGCCCCCCTGGAC	0.662													41	69					0	0	0.006230	0	0
SREBF2	6721	broad.mit.edu	37	22	42280955	42280955	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:42280955C>T	uc003bbi.2	+	11	2317	c.2148C>T	c.(2146-2148)ATC>ATT	p.I716I	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|SREBF2_uc003bbj.2_RNA	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	716	Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						TGGTTGAGATCCATCTGACTG	0.587													12	36					0	0	0.002450	0	0
PACSIN2	11252	broad.mit.edu	37	22	43272197	43272198	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:43272197_43272198GG>AT	uc010gzg.2	-	10	1515_1516	c.1293_1294CC>AT	c.(1291-1296)GTCCGG>GTATGG	p.R432W	PACSIN2_uc003bdg.3_Missense_Mutation_p.R432W|PACSIN2_uc003bde.3_Missense_Mutation_p.R432W|PACSIN2_uc003bdf.3_Missense_Mutation_p.R391W	NM_007229	NP_009160	Q9UNF0	PACN2_HUMAN	protein kinase C and casein kinase substrate in	432	SH3.				actin cytoskeleton organization|endocytosis	cytoplasmic membrane-bounded vesicle	transporter activity				0		Glioma(61;0.222)				TACAGGGCCCGGACTCGCACTT	0.609													15	43					0	0	0.004672	0	0
SULT4A1	25830	broad.mit.edu	37	22	44234753	44234753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:44234753C>T	uc003bee.1	-	4	618	c.502G>A	c.(502-504)GAT>AAT	p.D168N	SULT4A1_uc003bed.1_Missense_Mutation_p.D89N|SULT4A1_uc003bef.1_RNA|SULT4A1_uc011aqb.1_Intron	NM_014351	NP_055166	Q9BR01	ST4A1_HUMAN	sulfotransferase family 4A, member 1	168					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	sulfotransferase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)		Colorectal(1;0.00242)|READ - Rectum adenocarcinoma(1;0.0419)		TCACGCTTATCATTCATAAAC	0.438													8	38					0	0	0.004482	0	0
PARVB	29780	broad.mit.edu	37	22	44514984	44514984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:44514984G>A	uc003ben.2	+	4	392	c.340G>A	c.(340-342)GAC>AAC	p.D114N	PARVB_uc003bem.2_Missense_Mutation_p.D147N|PARVB_uc010gzn.2_Missense_Mutation_p.D62N|PARVB_uc003beo.2_Missense_Mutation_p.D77N	NM_013327	NP_037459	Q9HBI1	PARVB_HUMAN	parvin, beta isoform b	114	CH 1.				cell adhesion|cell junction assembly	cytoskeleton|cytosol|focal adhesion	actin binding				0		Ovarian(80;0.0246)|all_neural(38;0.0423)				GCTGGAGGAAGACCTGTATGA	0.602													44	106					0	0	0.003610	0	0
FBLN1	2192	broad.mit.edu	37	22	45937138	45937138	+	Missense_Mutation	SNP	C	T	T	rs113064196		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:45937138C>T	uc003bgj.1	+	9	1099	c.952C>T	c.(952-954)CCG>TCG	p.P318S	FBLN1_uc003bgg.1_Missense_Mutation_p.P318S|FBLN1_uc003bgh.2_Missense_Mutation_p.P318S|FBLN1_uc010gzz.2_Missense_Mutation_p.P356S|FBLN1_uc003bgi.1_Missense_Mutation_p.P318S	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	318	EGF-like 4; calcium-binding (Potential).				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TATCAGTGCCCCGTGCCCTAT	0.532													26	48					0	0	0.004656	0	0
CELSR1	9620	broad.mit.edu	37	22	46930693	46930693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:46930693G>A	uc003bhw.1	-	1	2375	c.2375C>T	c.(2374-2376)TCC>TTC	p.S792F		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	792	Extracellular (Potential).|Cadherin 6.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		TGTGTAATGGGAGCTCTGAAA	0.582													21	22					0	0	0.001523	0	0
GRAMD4	23151	broad.mit.edu	37	22	47058961	47058961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr22:47058961C>T	uc003bhx.2	+	5	530	c.491C>T	c.(490-492)TCG>TTG	p.S164L	GRAMD4_uc010had.2_Missense_Mutation_p.S103L	NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein	164					apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		GGGCTGTCCTCGCGCCTGCAG	0.672													25	43					0	0	0.005443	0	0
GRM7	2917	broad.mit.edu	37	3	7494349	7494349	+	Silent	SNP	C	T	T	rs143220145	byFrequency	TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:7494349C>T	uc003bqm.2	+	6	1504	c.1230C>T	c.(1228-1230)TTC>TTT	p.F410F	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.F410F|GRM7_uc003bql.2_Silent_p.F410F|GRM7_uc003bqn.1_5'UTR|GRM7_uc010hch.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	410	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	AAGTCCAGTTCGTGATTGACG	0.428													17	32					0	0	0.004990	0	0
BRPF1	7862	broad.mit.edu	37	3	9776317	9776317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:9776317C>T	uc003bse.2	+	2	892	c.493C>T	c.(493-495)CAC>TAC	p.H165Y	BRPF1_uc003bsf.2_Missense_Mutation_p.H165Y|BRPF1_uc003bsg.2_Missense_Mutation_p.H165Y|BRPF1_uc011ati.1_Missense_Mutation_p.H165Y	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	165	Interaction with MYST3 and MYST4.				histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					CCATCACCACCACCACAATGT	0.557													13	31					0	0	0.001855	0	0
HDAC11	79885	broad.mit.edu	37	3	13543387	13543387	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:13543387T>G	uc003bxy.2	+	7	639	c.506T>G	c.(505-507)GTG>GGG	p.V169G	HDAC11_uc010heb.2_Missense_Mutation_p.W127G|HDAC11_uc011aux.1_5'UTR|HDAC11_uc003bxz.2_Missense_Mutation_p.V141G|HDAC11_uc011auy.1_Missense_Mutation_p.V118G	NM_024827	NP_079103	Q96DB2	HDA11_HUMAN	histone deacetylase 11 isoform 1	169	Histone deacetylase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex|plasma membrane	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription factor binding			ovary(2)	2						TTTGAGCGTGTGGAGGGCATC	0.612													33	85					0	0	0.006999	0	0
FGD5	152273	broad.mit.edu	37	3	14939084	14939084	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:14939084G>A	uc003bzc.2	+	5	2927	c.2817G>A	c.(2815-2817)CGG>CGA	p.R939R	FGD5_uc011avk.1_Silent_p.R939R|FGD5_uc003bzd.2_Silent_p.R17R	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	939	DH.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						CATTGGCCCGGGAGGAGCTGA	0.552													4	5					0	0	0.000248	0	0
PLCL2	23228	broad.mit.edu	37	3	17052619	17052619	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:17052619A>C	uc011awc.1	+	5	1862	c.1757A>C	c.(1756-1758)CAG>CCG	p.Q586P	PLCL2_uc011awd.1_Missense_Mutation_p.Q468P	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	594					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						GAAATGTCTCAGAGGATGGGA	0.423													11	21					0	0	0.008291	0	0
TBC1D5	9779	broad.mit.edu	37	3	17202628	17202628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:17202628G>A	uc003cbf.2	-	22	3880	c.2215C>T	c.(2215-2217)CGC>TGC	p.R739C	TBC1D5_uc010heu.2_Missense_Mutation_p.R326C|TBC1D5_uc010hev.2_Missense_Mutation_p.R761C|TBC1D5_uc003cbe.2_Missense_Mutation_p.R739C	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	739						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						CTGAGGGTGCGAAGAGGCTGG	0.582													13	45					0	0	0.001368	0	0
KCNH8	131096	broad.mit.edu	37	3	19295239	19295239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:19295239G>A	uc003cbk.1	+	2	365	c.170G>A	c.(169-171)CGA>CAA	p.R57Q	KCNH8_uc011awe.1_Missense_Mutation_p.R57Q|KCNH8_uc010hex.1_5'UTR	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	57	Cytoplasmic (Potential).|PAS.					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						GGATTTGCCCGAACTGAAGTC	0.458													81	133					0	0	0.003610	0	0
ZNF385D	79750	broad.mit.edu	37	3	21467032	21467032	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:21467032G>A	uc003cce.2	-	6	1212	c.804C>T	c.(802-804)CAC>CAT	p.H268H		NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	268	Matrin-type 3.					nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						AGATTTCACAGTGAAATGTTT	0.428													32	69					0	0	0.002445	0	0
STT3B	201595	broad.mit.edu	37	3	31621363	31621363	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:31621363A>G	uc011axe.1	+	3	486	c.486A>G	c.(484-486)ATA>ATG	p.I162M	STT3B_uc010hft.1_Missense_Mutation_p.I162M|STT3B_uc003cer.1_Missense_Mutation_p.I162M	NM_178862	NP_849193	Q8TCJ2	STT3B_HUMAN	source of immunodominant MHC-associated	162					protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding				0						CATTGAACATAACTGTTCACA	0.353													26	45					0	0	0.003954	0	0
ARPP21	10777	broad.mit.edu	37	3	35756948	35756948	+	Silent	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:35756948A>G	uc003cgb.2	+	12	1179	c.915A>G	c.(913-915)GAA>GAG	p.E305E	ARPP21_uc003cga.2_Silent_p.E271E|ARPP21_uc011axy.1_Silent_p.E271E|ARPP21_uc003cgf.2_Silent_p.E107E	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	305						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						GCTCCCAGGAAAGCCTTTTTG	0.323													18	55					0	0	0.001523	0	0
GOLGA4	2803	broad.mit.edu	37	3	37366306	37366306	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:37366306C>T	uc003cgv.2	+	14	3233	c.2929C>T	c.(2929-2931)CAG>TAG	p.Q977*	GOLGA4_uc010hgr.1_Nonsense_Mutation_p.Q538*|GOLGA4_uc003cgw.2_Nonsense_Mutation_p.Q999*|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Nonsense_Mutation_p.Q858*	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	977	Potential.|Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						ATTACTGGATCAGGAAGCCAA	0.338													38	78					0	0	0.008740	0	0
VILL	50853	broad.mit.edu	37	3	38035811	38035811	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:38035811G>A	uc003chj.2	+	4	481	c.195G>A	c.(193-195)GGG>GGA	p.G65G	VILL_uc003chk.1_Silent_p.G65G|VILL_uc003chl.2_Silent_p.G65G|VILL_uc010hgu.2_5'UTR	NM_015873	NP_056957	O15195	VILL_HUMAN	villin-like protein	65	Gelsolin-like 1.				actin filament capping|cytoskeleton organization	actin cytoskeleton	actin binding|structural constituent of cytoskeleton				0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		ACTGGGTCGGGAAGCAGGCGG	0.697													13	22					0	0	0.003163	0	0
ACAA1	30	broad.mit.edu	37	3	38167134	38167134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:38167134G>A	uc003cht.2	-	11	1328	c.1121C>T	c.(1120-1122)GCC>GTC	p.A374V	ACAA1_uc003chu.2_Missense_Mutation_p.A281V|ACAA1_uc010hgy.2_Missense_Mutation_p.A333V|ACAA1_uc010hgz.2_Intron|ACAA1_uc003chv.2_Missense_Mutation_p.A222V	NM_001607	NP_001598	P09110	THIK_HUMAN	acetyl-Coenzyme A acyltransferase 1 isoform a	374					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy	peroxisomal matrix	acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0523)|Kidney(284;0.0657)		GTGCCCTAAGGCCACTGCACC	0.617													16	36					0	0	0.004007	0	0
SLC22A13	9390	broad.mit.edu	37	3	38316508	38316508	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:38316508G>A	uc003chz.3	+	4	720	c.666G>A	c.(664-666)AGG>AGA	p.R222R	SLC22A13_uc011aym.1_RNA|SLC22A13_uc011ayn.1_Silent_p.R222R	NM_004256	NP_004247	Q9Y226	S22AD_HUMAN	solute carrier family 22 (organic anion	222	Cytoplasmic (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0533)|Kidney(284;0.067)		CCTCATGGAGGACGCAGGCCG	0.597													41	82					0	0	0.008740	0	0
SCN5A	6331	broad.mit.edu	37	3	38592926	38592926	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:38592926A>C	uc003cio.2	-	28	5131	c.4937T>G	c.(4936-4938)CTG>CGG	p.L1646R	SCN5A_uc003cin.2_Missense_Mutation_p.L1645R|SCN5A_uc003cil.3_Missense_Mutation_p.L1646R|SCN5A_uc010hhi.2_Missense_Mutation_p.L1628R|SCN5A_uc010hhk.2_Missense_Mutation_p.L1613R|SCN5A_uc011ayr.1_Missense_Mutation_p.L1592R	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1646					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GGCAAAGAGCAGCGTGCGGAT	0.582													31	86					0	0	0.002836	0	0
SCN5A	6331	broad.mit.edu	37	3	38627507	38627507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:38627507G>A	uc003cio.2	-	16	2656	c.2462C>T	c.(2461-2463)TCA>TTA	p.S821L	SCN5A_uc003cin.2_Missense_Mutation_p.S821L|SCN5A_uc003cil.3_Missense_Mutation_p.S821L|SCN5A_uc010hhi.2_Missense_Mutation_p.S821L|SCN5A_uc010hhk.2_Missense_Mutation_p.S821L|SCN5A_uc011ayr.1_Missense_Mutation_p.S821L|SCN5A_uc010hhj.1_Missense_Mutation_p.S432L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	821	Helical; Voltage-sensor; Name=S4 of repeat II; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GGTGGGCCATGATTTGGCCAG	0.582													15	28					0	0	0.003163	0	0
SCN11A	11280	broad.mit.edu	37	3	38889207	38889207	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:38889207G>A	uc011ays.1	-	26	4553	c.4354C>T	c.(4354-4356)CAG>TAG	p.Q1452*		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1452	IV.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ATGTGCTCCTGATTTTCCAAG	0.507													13	24					0	0	0.002450	0	0
SCN11A	11280	broad.mit.edu	37	3	38941523	38941523	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:38941523G>A	uc011ays.1	-	13	2083	c.1884C>T	c.(1882-1884)ATC>ATT	p.I628I		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	628	II.|Helical; Name=S2 of repeat II; (By similarity).				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CGAGCGCAATGATTTTTAGGC	0.408													8	13					0	0	0.004482	0	0
SCN11A	11280	broad.mit.edu	37	3	38949510	38949510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:38949510G>A	uc011ays.1	-	10	1602	c.1403C>T	c.(1402-1404)TCC>TTC	p.S468F		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	468					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CAAAAAGAAGGACTTCCTTTT	0.398													26	83					0	0	0.004656	0	0
SCN11A	11280	broad.mit.edu	37	3	38962691	38962691	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:38962691C>T	uc011ays.1	-	6	967	c.768G>A	c.(766-768)GTG>GTA	p.V256V		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	256	Helical; Name=S5 of repeat I; (By similarity).|I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TGAGGATAATCACGTTGACCA	0.532													54	101					0	0	0.003610	0	0
XIRP1	165904	broad.mit.edu	37	3	39229895	39229895	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:39229895G>A	uc003cjk.1	-	2	1263	c.1042C>T	c.(1042-1044)CTG>TTG	p.L348L	XIRP1_uc003cji.2_Silent_p.L348L|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	348	Xin 8.						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GTCTCAAACAGATGCTGCTGC	0.602													38	66					0	0	0.005524	0	0
CCK	885	broad.mit.edu	37	3	42299711	42299711	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:42299711C>T	uc003clc.1	-	3	436	c.227G>A	c.(226-228)CGA>CAA	p.R76Q	CCK_uc003cld.1_Missense_Mutation_p.R76Q	NM_000729	NP_000720	P06307	CCKN_HUMAN	cholecystokinin preproprotein	76					axonogenesis|eating behavior|neuron migration		neuropeptide hormone activity			central_nervous_system(1)	1		Ovarian(412;0.0728)		KIRC - Kidney renal clear cell carcinoma(284;0.219)		GATGGACATTCGTCCAGAAGG	0.473													30	56					0	0	0.006230	0	0
KBTBD5	131377	broad.mit.edu	37	3	42733442	42733442	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:42733442T>G	uc003clv.1	+	6	1923	c.1823T>G	c.(1822-1824)TTC>TGC	p.F608C		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	608	Kelch 5.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		GGTGCCACCTTCCTACCAGTG	0.582													34	52					0	0	0.004878	0	0
C3orf39	84892	broad.mit.edu	37	3	43122588	43122588	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:43122588G>A	uc003cmq.1	-	2	477	c.336C>T	c.(334-336)TTC>TTT	p.F112F	C3orf39_uc003cmr.1_Silent_p.F112F	NM_032806	NP_116195	Q8NAT1	AGO61_HUMAN	glycosyltransferase precursor	112						extracellular region	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0571)|Kidney(284;0.0718)		GGGCTGGCTGGAAGCGCCGGG	0.602													24	47					0	0	0.002299	0	0
ZNF445	353274	broad.mit.edu	37	3	44491960	44491960	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:44491960A>T	uc003cnf.2	-	6	1147	c.799T>A	c.(799-801)TAT>AAT	p.Y267N	ZNF445_uc011azv.1_Missense_Mutation_p.Y255N|ZNF445_uc011azw.1_Missense_Mutation_p.Y267N	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	267	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		ATGTTCCTATAATTCTCCAGC	0.483													33	42					0	0	0.002836	0	0
ALS2CL	259173	broad.mit.edu	37	3	46718189	46718189	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:46718189G>A	uc003cqa.1	-	18	2161	c.1971C>T	c.(1969-1971)ATC>ATT	p.I657I	ALS2CL_uc003cpx.1_Silent_p.I4I|ALS2CL_uc003cpy.1_RNA|ALS2CL_uc003cpz.1_Silent_p.I172I|ALS2CL_uc003cqb.1_Silent_p.I657I|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	657					endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		GCTCCTCCAGGATGTCTTCCA	0.652													23	46					0	0	0.003954	0	0
COL7A1	1294	broad.mit.edu	37	3	48626092	48626092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:48626092G>A	uc003ctz.2	-	19	2571	c.2570C>T	c.(2569-2571)TCC>TTC	p.S857F		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	857	Nonhelical region (NC1).|Fibronectin type-III 7.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GACAACAATGGAGACAGGTGT	0.582													15	29					0	0	0.003163	0	0
USP19	10869	broad.mit.edu	37	3	49149150	49149150	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:49149150G>A	uc003cwd.1	-	20	2852	c.2691C>T	c.(2689-2691)TCC>TCT	p.S897S	USP19_uc003cwa.2_Silent_p.S705S|USP19_uc003cvz.3_Silent_p.S1000S|USP19_uc011bcg.1_Silent_p.S988S|USP19_uc003cwb.2_Intron|USP19_uc003cwc.1_Silent_p.S655S|USP19_uc011bch.1_Silent_p.S998S	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	897	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CAGCCTCCAGGGAACCTGTGG	0.637													20	47					0	0	0.002299	0	0
LAMB2	3913	broad.mit.edu	37	3	49159424	49159424	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:49159424G>C	uc003cwe.2	-	29	5175	c.4876C>G	c.(4876-4878)CGG>GGG	p.R1626G	USP19_uc003cvz.3_5'Flank|USP19_uc011bcg.1_5'Flank|USP19_uc003cwb.2_5'Flank|USP19_uc003cwd.1_5'Flank|USP19_uc011bch.1_5'Flank|USP19_uc011bci.1_5'Flank	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	1626	Potential.|Domain I.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity	p.R1626P(1)		ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		ACTGCCCCCCGGATGGCACCC	0.607													36	63					0	0	0.005524	0	0
NICN1	84276	broad.mit.edu	37	3	49466624	49466624	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:49466624G>A	uc003cwz.1	-	1	134	c.49C>T	c.(49-51)CAG>TAG	p.Q17*	NICN1_uc003cxa.2_RNA|NICN1_uc011bcr.1_Nonsense_Mutation_p.Q17*	NM_032316	NP_115692	Q9BSH3	NICN1_HUMAN	nicolin 1	17						microtubule|nucleus					0				BRCA - Breast invasive adenocarcinoma(193;4.52e-05)|Kidney(197;0.00217)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		TCGCCCACCTGGAGGGCTACG	0.657													15	21					0	0	0.004990	0	0
MON1A	84315	broad.mit.edu	37	3	49949036	49949036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:49949036G>A	uc003cxz.2	-	3	953	c.827C>T	c.(826-828)TCC>TTC	p.S276F	MON1A_uc003cya.2_Intron|MON1A_uc003cyb.2_Intron	NM_032355	NP_115731	Q86VX9	MON1A_HUMAN	MON1 homolog A isoform a	179							protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CATAGTGCTGGAAAGTGCCTC	0.592													23	42					0	0	0.002780	0	0
RBM15B	29890	broad.mit.edu	37	3	51430285	51430285	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:51430285C>T	uc003dbd.2	+	1	1555	c.1455C>T	c.(1453-1455)CTC>CTT	p.L485L		NM_013286	NP_037418	Q8NDT2	RB15B_HUMAN	RNA binding motif protein 15B	485	RRM 3.				interspecies interaction between organisms|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nucleoplasm	nucleotide binding|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000224)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		ACCGCAGGCTCCGCGTGGATT	0.572													20	58					0	0	0.001523	0	0
TEX264	51368	broad.mit.edu	37	3	51718650	51718650	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:51718650G>A	uc010hls.2	+	4	649	c.480G>A	c.(478-480)AAG>AAA	p.K160K	TEX264_uc003dbk.3_Silent_p.K160K|TEX264_uc010hlt.2_5'UTR|TEX264_uc003dbl.3_Silent_p.K160K|TEX264_uc003dbm.3_Silent_p.K199K	NM_001129884	NP_001123356	Q9Y6I9	TX264_HUMAN	testis expressed 264 precursor	160						extracellular region					0				BRCA - Breast invasive adenocarcinoma(193;8.53e-05)|Kidney(197;0.000594)|KIRC - Kidney renal clear cell carcinoma(197;0.000759)		CCTACATCAAGGTGAGGCACA	0.602													5	13					0	0	0.001984	0	0
ITIH1	3697	broad.mit.edu	37	3	52821082	52821082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:52821082G>A	uc003dfs.2	+	14	1879	c.1855G>A	c.(1855-1857)GGC>AGC	p.G619S	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Missense_Mutation_p.G220S|ITIH1_uc010hmo.1_Missense_Mutation_p.G173S|ITIH1_uc003dfu.2_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	619	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		GGACCAGGACGGCCTGAAGCC	0.592													26	71					0	0	0.002836	0	0
RFT1	91869	broad.mit.edu	37	3	53159945	53159945	+	Silent	SNP	G	A	A	rs148510042		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:53159945G>A	uc003dgj.2	-	2	183	c.129C>T	c.(127-129)ATC>ATT	p.I43I	RFT1_uc003dgk.2_Silent_p.I43I	NM_052859	NP_443091	Q96AA3	RFT1_HUMAN	RFT1 homolog	43	Helical; (Potential).				carbohydrate transport|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane	lipid transporter activity	p.I43I(1)		skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;6.98e-05)|Kidney(197;0.0017)|KIRC - Kidney renal clear cell carcinoma(197;0.00192)|OV - Ovarian serous cystadenocarcinoma(275;0.104)		CTACGCCAACGATTTCCTTTG	0.408													13	30					0	0	0.001368	0	0
IL17RB	55540	broad.mit.edu	37	3	53890992	53890992	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:53890992C>T	uc003dha.2	+	7	690	c.651C>T	c.(649-651)ATC>ATT	p.I217I		NM_018725	NP_061195	Q9NRM6	I17RB_HUMAN	interleukin 17B receptor precursor	217	Extracellular (Potential).				defense response|regulation of cell growth	extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)		GCACTATCATCGGGTTTTCTC	0.463													57	115					0	0	0.003610	0	0
ERC2	26059	broad.mit.edu	37	3	56207483	56207483	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:56207483G>A	uc003dhr.1	-	4	1396	c.1140C>T	c.(1138-1140)ATC>ATT	p.I380I		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	380	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CCTTCATTTCGATGACAGTCT	0.468													26	44					0	0	0.006320	0	0
DNASE1L3	1776	broad.mit.edu	37	3	58178429	58178429	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:58178429C>T	uc003djo.1	-	8	1000	c.903G>A	c.(901-903)AAG>AAA	p.K301K	DNASE1L3_uc011bfd.1_Silent_p.K271K|DNASE1L3_uc003djp.1_Silent_p.K301K|DNASE1L3_uc003djq.1_3'UTR	NM_004944	NP_004935	Q13609	DNSL3_HUMAN	deoxyribonuclease I-like 3 precursor	301	Nuclear localization signal (Potential).				apoptosis|DNA catabolic process	nucleus	calcium ion binding|DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters			breast(2)|large_intestine(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.00021)|KIRC - Kidney renal clear cell carcinoma(284;0.0445)|Kidney(284;0.0556)|OV - Ovarian serous cystadenocarcinoma(275;0.202)		AGCGTTTGCTCTTTGTTTTCT	0.348													29	74					0	0	0.007291	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64589969	64589969	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:64589969G>A	uc003dmg.2	-	24	3545	c.3513C>T	c.(3511-3513)GCC>GCT	p.A1171A	ADAMTS9_uc011bfo.1_Silent_p.A1143A|ADAMTS9_uc003dmh.1_Silent_p.A1000A|ADAMTS9_uc011bfp.1_Silent_p.A82A	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1171					glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TCGTTTCCGGGGCAGCTGGGG	0.488													99	251					0	0	0.003610	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64599113	64599113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:64599113C>T	uc003dmg.2	-	22	3294	c.3262G>A	c.(3262-3264)GAT>AAT	p.D1088N	ADAMTS9_uc011bfo.1_Missense_Mutation_p.D1060N|ADAMTS9_uc003dmh.1_Missense_Mutation_p.D917N|ADAMTS9_uc011bfp.1_5'UTR	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1088	TSP type-1 5.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CACATTCTATCATTTAATCGA	0.517													142	314					0	0	0.003610	0	0
PDZRN3	23024	broad.mit.edu	37	3	73433735	73433735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:73433735G>A	uc003dpl.1	-	10	2078	c.1982C>T	c.(1981-1983)CCT>CTT	p.P661L	PDZRN3_uc011bgh.1_Missense_Mutation_p.P318L|PDZRN3_uc010hoe.1_Missense_Mutation_p.P359L|PDZRN3_uc011bgf.1_Missense_Mutation_p.P378L|PDZRN3_uc011bgg.1_Missense_Mutation_p.P381L	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	661							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		CAGGCCGTAAGGGGTGGCGCT	0.667													26	51					0	0	0.005443	0	0
CNTN3	5067	broad.mit.edu	37	3	74411041	74411041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:74411041C>T	uc003dpm.1	-	10	1444	c.1364G>A	c.(1363-1365)AGA>AAA	p.R455K		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	455	Ig-like C2-type 5.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		ATCAAAATACCTTTCATGCTC	0.448													23	34					0	0	0.003954	0	0
ROBO2	6092	broad.mit.edu	37	3	77542460	77542460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:77542460C>T	uc003dpy.3	+	5	1376	c.733C>T	c.(733-735)CGT>TGT	p.R245C	ROBO2_uc003dpz.2_Missense_Mutation_p.R245C|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.R245C	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	245	Ig-like C2-type 3.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		TGTAGAATTTCGTTGTCAAGT	0.418													22	42					0	0	0.001882	0	0
ROBO1	6091	broad.mit.edu	37	3	78710396	78710396	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:78710396G>A	uc003dqe.2	-	16	2312	c.2104C>T	c.(2104-2106)CAG>TAG	p.Q702*	ROBO1_uc003dqb.2_Nonsense_Mutation_p.Q663*|ROBO1_uc003dqc.2_Nonsense_Mutation_p.Q666*|ROBO1_uc003dqd.2_Nonsense_Mutation_p.Q666*|ROBO1_uc010hoh.2_5'UTR|ROBO1_uc011bgl.1_Nonsense_Mutation_p.Q274*|ROBO1_uc003dqf.1_Nonsense_Mutation_p.Q381*	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	702	Extracellular (Potential).|Fibronectin type-III 2.				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		TGTATATACTGAGACTGTTGA	0.323													7	12					0	0	0.001984	0	0
COL8A1	1295	broad.mit.edu	37	3	99513871	99513871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:99513871G>A	uc003dtg.1	+	5	1371	c.1126G>A	c.(1126-1128)GAG>AAG	p.E376K	COL8A1_uc003dth.1_Missense_Mutation_p.E376K|COL8A1_uc003dti.1_Missense_Mutation_p.E377K	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	376	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						ACCAAGAGGGGAGAAAGGACC	0.617													9	19					0	0	0.004482	0	0
TRAT1	50852	broad.mit.edu	37	3	108572544	108572544	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:108572544G>A	uc003dxi.1	+	6	525	c.381G>A	c.(379-381)CAG>CAA	p.Q127Q	TRAT1_uc010hpx.1_Silent_p.Q90Q	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	127	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						CCAGGAAACAGAATACTCATT	0.443													14	18					0	0	0.001855	0	0
SLC9A10	285335	broad.mit.edu	37	3	111887770	111887770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:111887770C>T	uc003dyu.2	-	25	3413	c.3191G>A	c.(3190-3192)CGA>CAA	p.R1064Q	SLC9A10_uc011bhu.1_Missense_Mutation_p.R327Q|SLC9A10_uc010hqc.2_Missense_Mutation_p.R1016Q	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	1064					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						ATAAGTTTTTCGTAACAGACA	0.323													34	32					0	0	0.008740	0	0
NR1I2	8856	broad.mit.edu	37	3	119536041	119536041	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:119536041C>T	uc003edj.2	+	9	3126	c.1287C>T	c.(1285-1287)TTC>TTT	p.F429F	NR1I2_uc003edi.2_Silent_p.F392F|NR1I2_uc003edk.2_Silent_p.F468F|NR1I2_uc003edl.2_Silent_p.F317F	NM_003889	NP_003880	O75469	NR1I2_HUMAN	nuclear receptor subfamily 1, group I, member 2	429	Ligand-binding.				drug export|exogenous drug catabolic process|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|steroid metabolic process|xenobiotic metabolic process|xenobiotic transport	nucleoplasm	drug binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(114;0.175)	Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Rifampin(DB01045)|Vitamin E(DB00163)	AGGAGTTGTTCGGCATCACAG	0.637													38	28					0	0	0.006999	0	0
FBXO40	51725	broad.mit.edu	37	3	121340695	121340695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:121340695C>T	uc003eeg.2	+	3	629	c.419C>T	c.(418-420)TCC>TTC	p.S140F		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	140					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		CTCTTCAGATCCTTGAAAATG	0.493													15	16					0	0	0.004990	0	0
SLC15A2	6565	broad.mit.edu	37	3	121643803	121643803	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:121643803C>T	uc003eep.2	+	13	1200	c.1047C>T	c.(1045-1047)CCC>CCT	p.P349P	SLC15A2_uc011bjn.1_Silent_p.P318P	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	349	Helical; (Potential).				protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TTCTAAATCCCCTTCTGGTTC	0.388													51	62					0	0	0.003610	0	0
KPNA1	3836	broad.mit.edu	37	3	122182787	122182787	+	Splice_Site	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:122182787A>C	uc003efd.1	-	4	373	c.337_splice	c.e4+1	p.E113_splice	KPNA1_uc011bjr.1_Splice_Site|KPNA1_uc010hrh.2_Splice_Site|KPNA1_uc003efe.2_Splice_Site_p.E113_splice	NM_002264	NP_002255	P52294	IMA1_HUMAN	karyopherin alpha 1						DNA fragmentation involved in apoptotic nuclear change|NLS-bearing substrate import into nucleus|regulation of DNA recombination|viral genome transport in host cell|viral infectious cycle	cytosol|nuclear pore|nucleoplasm	nuclear localization sequence binding|protein binding|protein transporter activity				0				GBM - Glioblastoma multiforme(114;0.0898)		TTCATAGCTCACCTTTTGAAA	0.353													19	22					0	0	0.008871	0	0
KALRN	8997	broad.mit.edu	37	3	124174098	124174098	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:124174098G>A	uc003ehg.2	+	22	3748	c.3621G>A	c.(3619-3621)ACG>ACA	p.T1207T	KALRN_uc010hrv.1_Silent_p.T1198T|KALRN_uc003ehf.1_Silent_p.T1207T|KALRN_uc011bjy.1_Silent_p.T1198T|KALRN_uc003ehh.1_Silent_p.T553T	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1207	Spectrin 5.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TTCATGCCACGGAGATAAGGA	0.488													31	34					0	0	0.008361	0	0
ZNF148	7707	broad.mit.edu	37	3	124951260	124951260	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:124951260G>A	uc003ehx.3	-	9	2796	c.2310C>T	c.(2308-2310)CCC>CCT	p.P770P	SLC12A8_uc003ehw.3_Intron|ZNF148_uc003ehz.3_Silent_p.P770P|ZNF148_uc010hsa.2_Silent_p.P770P|ZNF148_uc003eia.3_Silent_p.P770P|ZNF148_uc003ehy.2_Silent_p.P107P	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	770					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding	p.P770S(1)		skin(2)|ovary(1)|pancreas(1)	4						CATTCACCAAGGGAAATTCTG	0.403													19	12					0	0	0.001523	0	0
ALG1L2	644974	broad.mit.edu	37	3	129810956	129810956	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:129810956G>A	uc011bld.1	+	3	330	c.144G>A	c.(142-144)GAG>GAA	p.E48E	ALG1L2_uc010hth.2_RNA	NM_001136152	NP_001129624	C9J202	AG1L2_HUMAN	asparagine-linked glycosylation 1-like 2	48					biosynthetic process		transferase activity, transferring glycosyl groups				0						CAGAACCTGAGGACCCAGACA	0.637													6	6					0	0	0.001984	0	0
CEP70	80321	broad.mit.edu	37	3	138251411	138251411	+	Silent	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:138251411A>G	uc003esl.2	-	8	835	c.637T>C	c.(637-639)TTG>CTG	p.L213L	CEP70_uc011bmk.1_Silent_p.L193L|CEP70_uc011bml.1_Silent_p.L195L|CEP70_uc011bmm.1_Silent_p.L61L|CEP70_uc003esm.2_Silent_p.L213L	NM_024491	NP_077817	Q8NHQ1	CEP70_HUMAN	centrosomal protein 70 kDa	213					G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding			skin(1)	1						AGACAAAGCAACCTAGAAAAC	0.279													86	102					0	0	0.003610	0	0
GRK7	131890	broad.mit.edu	37	3	141499223	141499223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:141499223C>T	uc011bnd.1	+	2	704	c.620C>T	c.(619-621)GCC>GTC	p.A207V		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	207	Protein kinase.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						AAGGTATGTGCCGTCCAGGTG	0.458													11	8					0	0	0.000978	0	0
ATR	545	broad.mit.edu	37	3	142274762	142274762	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:142274762G>A	uc003eux.3	-	10	2420	c.2298C>T	c.(2296-2298)TTC>TTT	p.F766F		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	766					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						GTAGGAAAAGGAATGGCTTGC	0.358								Other_conserved_DNA_damage_response_genes					32	25					0	0	0.004289	0	0
LOC100128164	100128164	broad.mit.edu	37	3	169664219	169664219	+	RNA	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:169664219C>T	uc011bpp.1	-	2		c.3584G>A				NR_027622				Homo sapiens cDNA FLJ41016 fis, clone UTERU2018784.												0						GCCACAAAGGCCTTGAAGCAC	0.522													16	13					0	0	0.006122	0	0
TNIK	23043	broad.mit.edu	37	3	170884950	170884950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:170884950C>T	uc003fhh.2	-	10	1228	c.883G>A	c.(883-885)GAG>AAG	p.E295K	TNIK_uc003fhi.2_Missense_Mutation_p.E295K|TNIK_uc003fhj.2_Missense_Mutation_p.E295K|TNIK_uc003fhk.2_Missense_Mutation_p.E295K|TNIK_uc003fhl.2_Missense_Mutation_p.E295K|TNIK_uc003fhm.2_Missense_Mutation_p.E295K|TNIK_uc003fhn.2_Missense_Mutation_p.E295K|TNIK_uc003fho.2_Missense_Mutation_p.E295K	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	295	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			ACCTGTCGCTCATTAGGTTGG	0.423													10	15					0	0	0.008291	0	0
CHRD	8646	broad.mit.edu	37	3	184102390	184102390	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:184102390C>T	uc003fov.2	+	13	1752	c.1506C>T	c.(1504-1506)TTC>TTT	p.F502F	CHRD_uc003fow.2_Silent_p.F132F|CHRD_uc003fox.2_Silent_p.F502F|CHRD_uc003foy.2_Silent_p.F132F|CHRD_uc010hyc.2_Silent_p.F92F|CHRD_uc011brr.1_Silent_p.F132F	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	502	CHRD 3.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			ATGAGCTCTTCCTGAACGTGG	0.647													59	50					0	0	0.003610	0	0
MASP1	5648	broad.mit.edu	37	3	187003811	187003811	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:187003811G>A	uc003frh.1	-	2	371	c.39C>T	c.(37-39)TCC>TCT	p.S13S	MASP1_uc003fri.2_Silent_p.S13S|MASP1_uc003frj.2_Intron|MASP1_uc003frk.1_Silent_p.S13S|MASP1_uc011bse.1_5'UTR	NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	13					complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		CCTTTGACAGGGAGAAGCACA	0.473													17	24					0	0	0.008871	0	0
ATP13A5	344905	broad.mit.edu	37	3	193051659	193051659	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:193051659G>A	uc011bsq.1	-	11	1152	c.1152C>T	c.(1150-1152)ATC>ATT	p.I384I		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	384					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		GGGGGTACAGGATGGATCTCA	0.453													25	14					0	0	0.004656	0	0
ATP13A4	84239	broad.mit.edu	37	3	193153515	193153515	+	Silent	SNP	G	A	A	rs146990016		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:193153515G>A	uc003ftd.2	-	24	2799	c.2691C>T	c.(2689-2691)CTC>CTT	p.L897L	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	897	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		AGGAGGTAACGAGAGCTGCAC	0.428													24	35					0	0	0.004656	0	0
WHSC2	7469	broad.mit.edu	37	4	2010584	2010585	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:2010584_2010585CC>TT	uc003gem.2	-	1	375_376	c.135_136GG>AA	c.(133-138)ACGGCC>ACAACC	p.A46T	WHSC2_uc003gen.2_5'UTR	NM_005663	NP_005654	Q9H3P2	NELFA_HUMAN	Wolf-Hirschhorn syndrome candidate 2 protein	35					multicellular organismal development|positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0155)			ATGACCGCGGCCGTGAGCAGGG	0.678													7	17					0	0	0.004672	0	0
LYAR	55646	broad.mit.edu	37	4	4281220	4281220	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:4281220G>A	uc011bvy.1	-	6	526	c.383C>T	c.(382-384)TCC>TTC	p.S128F	LYAR_uc011bvx.1_Missense_Mutation_p.S11F|LYAR_uc003ght.2_Missense_Mutation_p.S128F	NM_001145725	NP_001139197	Q9NX58	LYAR_HUMAN	Ly1 antibody reactive homolog	128						nucleolus	metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GTCCAGAATGGATTCATTATG	0.343													21	38					0	0	0.003330	0	0
C4orf50	389197	broad.mit.edu	37	4	5961113	5961113	+	Silent	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:5961113A>G	uc003git.1	-	7	910	c.820T>C	c.(820-822)TTA>CTA	p.L274L		NM_207405	NP_997288	Q6ZRC1	CD050_HUMAN	hypothetical protein LOC389197	274										pancreas(2)|breast(1)	3						TACATTTCTAACTCCAGCGGT	0.453													36	79					0	0	0.002522	0	0
PSAPL1	768239	broad.mit.edu	37	4	7435605	7435605	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:7435605C>T	uc011bwj.1	-	1	1096	c.1002G>A	c.(1000-1002)AAG>AAA	p.K334K	SORCS2_uc003gkb.3_Intron|SORCS2_uc011bwi.1_Intron	NM_001085382	NP_001078851	Q6NUJ1	SAPL1_HUMAN	prosaposin-like protein 1	334	Saposin B-type 3.				sphingolipid metabolic process	extracellular region|lysosome					0						TGATGCACTCCTTCGTGATAG	0.562													32	81					0	0	0.001786	0	0
DRD5	1816	broad.mit.edu	37	4	9784028	9784028	+	Silent	SNP	T	C	C	rs2227841	byFrequency	TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:9784028T>C	uc003gmb.3	+	1	771	c.375T>C	c.(373-375)ACT>ACC	p.T125T		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	125	Helical; Name=3; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	TGTGCTCCACTGCCTCCATCC	0.622													4	31					0	0	0.000248	0	0
BOD1L	259282	broad.mit.edu	37	4	13602925	13602925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:13602925C>T	uc003gmz.1	-	10	5716	c.5599G>A	c.(5599-5601)GGG>AGG	p.G1867R	BOD1L_uc010idr.1_Missense_Mutation_p.G1204R	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1867							DNA binding			ovary(5)|breast(1)	6						ACATCCTCCCCTTCCTCGTCT	0.463													29	61					0	0	0.006320	0	0
CC2D2A	57545	broad.mit.edu	37	4	15558949	15558949	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:15558949A>G	uc010idv.2	+	22	2893	c.2648A>G	c.(2647-2649)TAT>TGT	p.Y883C	CC2D2A_uc003gnx.2_Missense_Mutation_p.Y834C|CC2D2A_uc003gnz.1_RNA|CC2D2A_uc003goa.1_RNA	NM_001080522	NP_001073991	Q9P2K1	C2D2A_HUMAN	coiled-coil and C2 domain containing 2A isoform	883					cell projection organization	cilium|microtubule basal body				pancreas(2)|ovary(1)	3						GGTGAATCCTATGTCCCTGAT	0.393													15	46					0	0	0.004990	0	0
LDB2	9079	broad.mit.edu	37	4	16510176	16510176	+	Silent	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:16510176A>G	uc003goz.2	-	7	1189	c.873T>C	c.(871-873)AGT>AGC	p.S291S	LDB2_uc003gpa.2_Silent_p.S291S|LDB2_uc003gpb.2_Silent_p.S291S|LDB2_uc011bxh.1_Silent_p.S263S|LDB2_uc010iee.2_Silent_p.S291S|LDB2_uc003goy.2_Silent_p.S166S|LDB2_uc011bxi.1_Silent_p.S167S	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	291							LIM domain binding|transcription cofactor activity				0						GACTGGACAGACTCAGGTTTG	0.478													26	42					0	0	0.005443	0	0
LDB2	9079	broad.mit.edu	37	4	16510279	16510279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:16510279C>T	uc003goz.2	-	7	1086	c.770G>A	c.(769-771)CGG>CAG	p.R257Q	LDB2_uc003gpa.2_Missense_Mutation_p.R257Q|LDB2_uc003gpb.2_Missense_Mutation_p.R257Q|LDB2_uc011bxh.1_Missense_Mutation_p.R229Q|LDB2_uc010iee.2_Missense_Mutation_p.R257Q|LDB2_uc003goy.2_Missense_Mutation_p.R132Q|LDB2_uc011bxi.1_Missense_Mutation_p.R133Q	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	257							LIM domain binding|transcription cofactor activity				0						CCTTTTTCTCCGTTTGGTTGT	0.478													20	46					0	0	0.001882	0	0
SLIT2	9353	broad.mit.edu	37	4	20611778	20611778	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:20611778C>G	uc003gpr.1	+	34	4039	c.3835C>G	c.(3835-3837)CTC>GTC	p.L1279V	SLIT2_uc003gps.1_Missense_Mutation_p.L1271V	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1279	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TGACTCTCCACTCTATGTAGG	0.428													14	33					0	0	0.004007	0	0
ARAP2	116984	broad.mit.edu	37	4	36069821	36069821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:36069821C>T	uc003gsq.1	-	33	5161	c.4823G>A	c.(4822-4824)AGA>AAA	p.R1608K	ARAP2_uc003gso.2_Intron	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1608					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CATGGAAGCTCTCTCCTTTAA	0.473													37	85					0	0	0.007835	0	0
SHISA3	152573	broad.mit.edu	37	4	42403192	42403192	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:42403192C>T	uc003gwp.2	+	2	659	c.441C>T	c.(439-441)CCC>CCT	p.P147P		NM_001080505	NP_001073974	A0PJX4	SHSA3_HUMAN	shisa homolog 3 precursor	147	Cytoplasmic (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane				ovary(1)|skin(1)	2						AGACCCTGCCCATGATCCTGA	0.607													72	207					0	0	0.003610	0	0
GRXCR1	389207	broad.mit.edu	37	4	42965114	42965114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:42965114C>T	uc003gwt.2	+	2	590	c.590C>T	c.(589-591)TCC>TTC	p.S197F		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	197	Glutaredoxin.				cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						GAAGCTCCTTCCCTCCCTGTT	0.433													121	247					0	0	0.003610	0	0
CORIN	10699	broad.mit.edu	37	4	47644036	47644036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:47644036G>A	uc003gxm.2	-	16	2192	c.2099C>T	c.(2098-2100)TCC>TTC	p.S700F	CORIN_uc011bzf.1_Missense_Mutation_p.S561F|CORIN_uc011bzg.1_Missense_Mutation_p.S633F	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	700	Extracellular (Potential).|SRCR.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						CATCAGAAAGGAAGAGGAGTT	0.448													27	42					0	0	0.006320	0	0
CNGA1	1259	broad.mit.edu	37	4	47953412	47953412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:47953412G>A	uc003gxt.3	-	5	460	c.194C>T	c.(193-195)TCC>TTC	p.S65F	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.S134F|CNGA1_uc003gxv.1_Missense_Mutation_p.S65F	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	65	Cytoplasmic (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						ATAACTAAAGGAACCCCTTGC	0.403													5	46					0	0	0.001168	0	0
LRRC66	339977	broad.mit.edu	37	4	52861055	52861055	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:52861055G>A	uc003gzi.2	-	4	2146	c.2133C>T	c.(2131-2133)TTC>TTT	p.F711F		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	711						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						AGCTCAGAGTGAACAGAGACC	0.527													34	49					0	0	0.003755	0	0
KDR	3791	broad.mit.edu	37	4	55955585	55955585	+	Silent	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:55955585T>C	uc003has.2	-	25	3662	c.3360A>G	c.(3358-3360)AAA>AAG	p.K1120K	KDR_uc003hat.1_Silent_p.K1120K	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1120	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TAGTTCCTTCTTTCAATCGCC	0.383			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			20	31					0	0	0.002780	0	0
Unknown	0	broad.mit.edu	37	4	69334627	69334628	+	Nonsense_Mutation	DNP	AG	TA	TA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:69334627_69334628AG>TA	uc003hdz.3	+	4	353_354	c.289_290AG>TA	c.(289-291)AGG>TAG	p.R97*		NM_014058	NP_054777			transmembrane protease, serine 11E																		ATCTCCATTAAGGGAAGAATTT	0.302													49	124					0	0	0.004672	0	0
UGT2B11	10720	broad.mit.edu	37	4	70079780	70079780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:70079780C>T	uc003heh.2	-	1	670	c.661G>A	c.(661-663)GAC>AAC	p.D221N	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	221					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						AACCAAAAGTCAAAATAAAGC	0.323													23	45					0	0	0.003954	0	0
UGT2B28	54490	broad.mit.edu	37	4	70148315	70148315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:70148315C>T	uc003hej.2	+	2	807	c.805C>T	c.(805-807)CCA>TCA	p.P269S	UGT2B28_uc010ihr.2_Missense_Mutation_p.P269S	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	269					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	ATTTCCTCATCCATTCTTACC	0.408													55	124					0	0	0.003610	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361321	70361321	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:70361321C>A	uc003hek.3	-	1	306	c.259G>T	c.(259-261)GAG>TAG	p.E87*	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Nonsense_Mutation_p.E87*	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	87					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						ATAATATCCTCAAACTCAGTT	0.358													14	25					4.3838e-07	4.90387e-07	0.001855	1	0
SULT1B1	27284	broad.mit.edu	37	4	70592812	70592812	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:70592812C>T	uc003hen.2	-	8	1183	c.885G>A	c.(883-885)GAG>GAA	p.E295E		NM_014465	NP_055280	O43704	ST1B1_HUMAN	sulfotransferase family, cytosolic, 1B, member	295					3'-phosphoadenosine 5'-phosphosulfate metabolic process|cellular biogenic amine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|thyroid hormone metabolic process|xenobiotic metabolic process	cytosol					0						CACTTTAAATCTCTGTGCGGA	0.368													17	33					0	0	0.007413	0	0
MUC7	4589	broad.mit.edu	37	4	71347045	71347045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:71347045C>T	uc011cat.1	+	4	872	c.584C>T	c.(583-585)CCT>CTT	p.P195L	MUC7_uc011cau.1_Missense_Mutation_p.P195L|MUC7_uc003hfj.2_Missense_Mutation_p.P195L|uc011cav.1_Intron	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	195	2.|Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			CCACCCACACCTTCTGCAACT	0.592													31	72					0	0	0.002096	0	0
ENAM	10117	broad.mit.edu	37	4	71508455	71508455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:71508455G>A	uc011caw.1	+	9	1593	c.1312G>A	c.(1312-1314)GAG>AAG	p.E438K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	438					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AAATCCAAAGGAGAAGCCCCT	0.443													17	33					0	0	0.004990	0	0
ANKRD17	26057	broad.mit.edu	37	4	74005789	74005789	+	Silent	SNP	G	A	A	rs143690709		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:74005789G>A	uc003hgp.2	-	15	2661	c.2544C>T	c.(2542-2544)ATC>ATT	p.I848I	ANKRD17_uc003hgo.2_Silent_p.I735I|ANKRD17_uc003hgq.2_Intron|ANKRD17_uc003hgr.2_Silent_p.I848I|ANKRD17_uc011cbd.1_Silent_p.I413I	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	848					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TGAGCTCCTCGATCTTCTCCT	0.418													66	139					0	0	0.003610	0	0
ALB	213	broad.mit.edu	37	4	74279174	74279174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:74279174C>T	uc003hgs.3	+	8	954	c.881C>T	c.(880-882)TCG>TTG	p.S294L	ALB_uc003hgw.3_Missense_Mutation_p.S102L|ALB_uc011cbe.1_5'UTR|ALB_uc003hgt.3_Missense_Mutation_p.S294L|ALB_uc010iii.2_Missense_Mutation_p.S179L|ALB_uc003hgu.3_Missense_Mutation_p.S144L|ALB_uc003hgv.3_5'UTR|ALB_uc011cbf.1_Missense_Mutation_p.S184L|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_5'UTR	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	294	Albumin 2.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	AATCAAGATTCGATCTCCAGT	0.423													19	42					0	0	0.001882	0	0
PPEF2	5470	broad.mit.edu	37	4	76794405	76794405	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:76794405G>A	uc003hix.2	-	12	1738	c.1381C>T	c.(1381-1383)CGA>TGA	p.R461*	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Nonsense_Mutation_p.R461*	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	461	Catalytic.				detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			CCTCCTCCTCGAATAGTGTTG	0.453													30	65					0	0	0.002096	0	0
FRAS1	80144	broad.mit.edu	37	4	79399128	79399128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:79399128G>A	uc003hlb.2	+	55	8451	c.8011G>A	c.(8011-8013)GAG>AAG	p.E2671K		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2666	Extracellular (Potential).|Calx-beta 2.				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CAACGATACCGAGGATGAACC	0.458													7	19					0	0	0.001984	0	0
ANXA3	306	broad.mit.edu	37	4	79503353	79503353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:79503353G>A	uc003hld.2	+	5	531	c.221G>A	c.(220-222)GGT>GAT	p.G74D	ANXA3_uc003hle.2_Missense_Mutation_p.G35D|ANXA3_uc010ijk.2_Missense_Mutation_p.G35D	NM_005139	NP_005130	P12429	ANXA3_HUMAN	annexin A3	74	Annexin 1.				defense response to bacterium|neutrophil degranulation|phagocytosis|positive regulation of angiogenesis|positive regulation of endothelial cell migration|positive regulation of sequence-specific DNA binding transcription factor activity	phagocytic vesicle membrane|plasma membrane|specific granule	calcium ion binding|calcium-dependent phospholipid binding|phospholipase A2 inhibitor activity				0						GACTTGAAGGGTGATCTCTCT	0.418													25	48					0	0	0.005443	0	0
BMP3	651	broad.mit.edu	37	4	81966934	81966934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:81966934C>T	uc003hmg.3	+	2	679	c.359C>T	c.(358-360)TCG>TTG	p.S120L		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	120					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						AATCTGACATCGCTAACCAAG	0.368													31	55					0	0	0.004289	0	0
KLHL8	57563	broad.mit.edu	37	4	88116516	88116516	+	Missense_Mutation	SNP	C	T	T	rs144616595		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:88116516C>T	uc011cdb.1	-	2	561	c.176G>A	c.(175-177)CGA>CAA	p.R59Q	KLHL8_uc003hql.1_Missense_Mutation_p.R59Q|KLHL8_uc003hqm.1_Missense_Mutation_p.R59Q|KLHL8_uc003hqn.1_Missense_Mutation_p.R59Q|KLHL8_uc010ikj.1_5'UTR	NM_020803	NP_065854	Q9P2G9	KLHL8_HUMAN	kelch-like 8	59											0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		TTCATAAAATCGAAGAAGAGA	0.368													15	44					0	0	0.004007	0	0
UNC5C	8633	broad.mit.edu	37	4	96137344	96137344	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:96137344G>A	uc003htp.1	-	10	1818	c.1664C>T	c.(1663-1665)CCC>CTC	p.P555L	UNC5C_uc010ilc.1_Missense_Mutation_p.P574L|UNC5C_uc003htq.2_Missense_Mutation_p.P574L	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	555	Cytoplasmic (Potential).|ZU5.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		GGCCCCAGCGGGAATCAGCAA	0.448													7	39					0	0	0.003080	0	0
ADH7	131	broad.mit.edu	37	4	100348958	100348958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:100348958C>T	uc003huv.1	-	5	671	c.572G>A	c.(571-573)GGA>GAA	p.G191E		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	191					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	AGCGCCATATCCAGTGGAAAA	0.408													16	26					0	0	0.004007	0	0
ADH7	131	broad.mit.edu	37	4	100349108	100349108	+	Missense_Mutation	SNP	C	T	T	rs72552718		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:100349108C>T	uc003huv.1	-	5	521	c.422G>A	c.(421-423)AGA>AAA	p.R141K		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	141					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	GCATGTAAATCTGGTGGTGCC	0.383													37	85					0	0	0.006999	0	0
NFKB1	4790	broad.mit.edu	37	4	103504093	103504093	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:103504093C>T	uc011ceq.1	+	10	1370	c.903C>T	c.(901-903)TCC>TCT	p.S301S	NFKB1_uc011cep.1_Silent_p.S302S|NFKB1_uc011cer.1_Silent_p.S121S	NM_003998	NP_003989	P19838	NFKB1_HUMAN	nuclear factor kappa-B, subunit 1 isoform 1	301	RHD.				anti-apoptosis|apoptosis|cellular response to mechanical stimulus|inflammatory response|innate immune response|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of calcidiol 1-monooxygenase activity|nerve growth factor receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter	cytosol|I-kappaB/NF-kappaB complex|mitochondrion|nucleoplasm	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|breast(2)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.59e-08)	Dexamethasone(DB01234)|Pranlukast(DB01411)|Thalidomide(DB01041)	GAGATTTTTCCCCCACAGATG	0.259													15	26					0	0	0.003163	0	0
EEF1A1P9	441032	broad.mit.edu	37	4	106406098	106406098	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:106406098A>C	uc003hxt.1	+	1	236	c.106A>C	c.(106-108)AAG>CAG	p.K36Q		NR_003586				SubName: Full=Eukaryotic translation elongation factor 1 alpha; Flags: Fragment;												0						TGAGACCAGCAAGTACTATGT	0.438													25	51					0	0	0.006320	0	0
ANK2	287	broad.mit.edu	37	4	114277367	114277367	+	Silent	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:114277367A>G	uc003ibe.3	+	38	7693	c.7593A>G	c.(7591-7593)TCA>TCG	p.S2531S	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Intron|ANK2_uc011cgb.1_Silent_p.S2546S	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2498					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TGGAGAGCTCAGGGAAGAGCC	0.547													32	79					0	0	0.002836	0	0
ARSJ	79642	broad.mit.edu	37	4	114823887	114823887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:114823887G>A	uc003ibq.1	-	2	2231	c.1343C>T	c.(1342-1344)GCC>GTC	p.A448V	ARSJ_uc010imu.1_Missense_Mutation_p.A448V|ARSJ_uc010imv.1_Missense_Mutation_p.A276V	NM_024590	NP_078866	Q5FYB0	ARSJ_HUMAN	arylsulfatase J precursor	448						extracellular region	arylsulfatase activity|metal ion binding			ovary(1)	1		Ovarian(17;0.0035)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00194)		CACTCTGATGGCTGACTGGAT	0.522													34	67					0	0	0.004878	0	0
ADAD1	132612	broad.mit.edu	37	4	123301320	123301320	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:123301320G>A	uc003ieo.2	+	3	328	c.96G>A	c.(94-96)ACG>ACA	p.T32T	ADAD1_uc003iep.2_Silent_p.T32T|ADAD1_uc003ieq.2_Silent_p.T14T	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	32					multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						CGACAAAGACGATAACTACAC	0.468													26	49					0	0	0.005443	0	0
INTU	27152	broad.mit.edu	37	4	128627833	128627833	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:128627833C>T	uc003ifk.1	+	12	2050	c.1980C>T	c.(1978-1980)TTC>TTT	p.F660F	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	660										ovary(1)	1						CTGACTGGTTCCTTACTGGAT	0.453													38	86					0	0	0.005524	0	0
PHF17	79960	broad.mit.edu	37	4	129764136	129764136	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:129764136C>T	uc003igk.2	+	3	361	c.81C>T	c.(79-81)TCC>TCT	p.S27S	PHF17_uc003igj.2_Silent_p.S27S|PHF17_uc003igl.2_Silent_p.S27S|PHF17_uc011cgy.1_Silent_p.S27S|PHF17_uc003igm.2_Silent_p.S27S	NM_199320	NP_955352	Q6IE81	JADE1_HUMAN	PHD finger protein 17 long isoform	27					apoptosis|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|negative regulation of cell growth|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	histone acetyltransferase complex|mitochondrion	protein binding|zinc ion binding				0						CCCAGAATTCCCGATCCCAGC	0.448													26	57					0	0	0.005443	0	0
ZNF827	152485	broad.mit.edu	37	4	146770626	146770626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:146770626G>A	uc003ikn.2	-	6	2117	c.2069C>T	c.(2068-2070)CCC>CTC	p.P690L	ZNF827_uc003ikm.2_Missense_Mutation_p.P690L|ZNF827_uc010iox.2_Missense_Mutation_p.P340L	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	690					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					ATTCCGGCTGGGTGATATCGA	0.507													38	79					0	0	0.008740	0	0
TLR2	7097	broad.mit.edu	37	4	154625141	154625141	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:154625141C>T	uc003inq.2	+	3	1301	c.1082C>T	c.(1081-1083)TCA>TTA	p.S361L	TLR2_uc003inr.2_Missense_Mutation_p.S361L|TLR2_uc003ins.2_Missense_Mutation_p.S361L	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	361	LRR 8.|Extracellular (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				CATTTAAAATCATTAGAATAC	0.323													15	31					0	0	0.003163	0	0
DCHS2	54798	broad.mit.edu	37	4	155155886	155155886	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:155155886C>T	uc003inw.2	-	25	8553	c.8553G>A	c.(8551-8553)CCG>CCA	p.P2851P		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2851					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GTGGGTGTTTCGGAGGCACCT	0.527													45	94					0	0	0.002522	0	0
NPY5R	4889	broad.mit.edu	37	4	164272412	164272412	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:164272412C>T	uc003iqn.2	+	4	1169	c.987C>T	c.(985-987)TTC>TTT	p.F329F		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	329	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				CCAGTAAGTTCATACCAGGGG	0.393													18	37					0	0	0.001523	0	0
ANP32C	23520	broad.mit.edu	37	4	165118374	165118374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:165118374C>T	uc011cjk.1	-	1	490	c.490G>A	c.(490-492)GAT>AAT	p.D164N	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	164	Asp/Glu-rich (highly acidic).										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		TCCTCGTCATCCAGGCCCTCC	0.413													22	36					0	0	0.001882	0	0
DDX60	55601	broad.mit.edu	37	4	169189063	169189063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:169189063C>T	uc003irp.2	-	21	3150	c.2858G>A	c.(2857-2859)AGA>AAA	p.R953K		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	953							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		ACCCACATGTCTTTTAGAAGC	0.323													22	47					0	0	0.001523	0	0
DDX60	55601	broad.mit.edu	37	4	169227682	169227682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:169227682C>T	uc003irp.2	-	5	746	c.454G>A	c.(454-456)GAT>AAT	p.D152N		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	152							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		GTTTGTAGATCGTTCAGGCCT	0.408													27	53					0	0	0.004656	0	0
DDX60L	91351	broad.mit.edu	37	4	169337923	169337923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:169337923C>T	uc003irq.3	-	20	2857	c.2636G>A	c.(2635-2637)GGA>GAA	p.G879E	DDX60L_uc003irr.1_Missense_Mutation_p.G879E|DDX60L_uc003irs.1_Missense_Mutation_p.G574E	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	879	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		AAATTTTGCTCCAACTTCTCT	0.338													22	35					0	0	0.003954	0	0
PALLD	23022	broad.mit.edu	37	4	169632881	169632881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:169632881G>A	uc011cjx.1	+	10	1982	c.1771G>A	c.(1771-1773)GAG>AAG	p.E591K	PALLD_uc003iru.2_Missense_Mutation_p.E591K|PALLD_uc003irv.2_Missense_Mutation_p.E209K	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	591					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		GAACAACCCTGAGTTAGGCCT	0.507									Pancreatic_Cancer_Familial_Clustering_of				24	57					0	0	0.007291	0	0
VEGFC	7424	broad.mit.edu	37	4	177608419	177608419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:177608419C>T	uc003ius.1	-	6	1497	c.1067G>A	c.(1066-1068)GGA>GAA	p.G356E		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	356	4 X 16 AA repeats of C-X(10)-C-X-C- X(1,3)-C.|4.				angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		GGCACATTTTCCAGGATTTAG	0.438													51	132					0	0	0.003610	0	0
ODZ3	55714	broad.mit.edu	37	4	183713577	183713578	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:183713577_183713578CC>TT	uc003ivd.1	+	25	5789_5790	c.5752_5753CC>TT	c.(5752-5754)CCG>TTG	p.P1918L		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1918	Extracellular (Potential).|YD 8.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ATACAACCCCCCGGAAAGCAAC	0.53													17	46					0	0	0.004672	0	0
KLKB1	3818	broad.mit.edu	37	4	187153328	187153328	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:187153328G>T	uc003iyy.2	+	3	177	c.106G>T	c.(106-108)GTA>TTA	p.V36L	KLKB1_uc011clc.1_5'UTR|KLKB1_uc011cld.1_5'UTR	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	36	Apple 1.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		AGGTGGGGATGTAGCTTCCAT	0.393													23	61					1.80694e-10	2.02634e-10	0.001786	1	0
KLKB1	3818	broad.mit.edu	37	4	187157998	187157998	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:187157998T>G	uc003iyy.2	+	5	463	c.392T>G	c.(391-393)GTT>GGT	p.V131G	KLKB1_uc011clc.1_5'UTR|KLKB1_uc011cld.1_Missense_Mutation_p.V93G	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	131	Apple 2.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		GTGTCTAAGGTTAGCAGTGTT	0.393													20	50					0	0	0.008871	0	0
F11	2160	broad.mit.edu	37	4	187197030	187197030	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:187197030C>T	uc003iza.1	+	6	908	c.575C>T	c.(574-576)TCC>TTC	p.S192F		NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	192	Apple 2.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	TCACTGAAATCCTGTGCACTT	0.383													3	7					0	0	0.000248	0	0
MTNR1A	4543	broad.mit.edu	37	4	187454897	187454897	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:187454897C>T	uc003izd.1	-	2	1017	c.999G>A	c.(997-999)TGG>TGA	p.W333*		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	333	Cytoplasmic (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	GAGACGGTTTCCATTTAACCC	0.478													51	87					0	0	0.003610	0	0
ZFP42	132625	broad.mit.edu	37	4	188924639	188924639	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:188924639C>T	uc003izg.1	+	3	923	c.678C>T	c.(676-678)TTC>TTT	p.F226F	ZFP42_uc003izh.1_Silent_p.F226F|ZFP42_uc003izi.1_Silent_p.F226F	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	226	C2H2-type 2.				female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		GGAAAGCGTTCGTTGAGAGCT	0.507													35	58					0	0	0.004878	0	0
TRIP13	9319	broad.mit.edu	37	5	916028	916028	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:916028G>A	uc003jbr.2	+	12	1253	c.1143G>A	c.(1141-1143)GAG>GAA	p.E381E		NM_004237	NP_004228	Q15645	PCH2_HUMAN	thyroid hormone receptor interactor 13	381					double-strand break repair|reciprocal meiotic recombination|synaptonemal complex assembly|transcription from RNA polymerase II promoter		ATP binding|identical protein binding|nucleoside-triphosphatase activity|transcription cofactor activity				0			Epithelial(17;0.00147)|OV - Ovarian serous cystadenocarcinoma(19;0.00271)|all cancers(22;0.00622)|Lung(60;0.165)			GGAAGAGCGAGGGCCTCAGCG	0.542													114	70					0	0	0.003610	0	0
FLJ33360	401172	broad.mit.edu	37	5	6312529	6312529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:6312529C>T	uc003jdn.1	-	2	444	c.347G>A	c.(346-348)GGG>GAG	p.G116E		NM_001001702	NP_001001702			SubName: Full=FLJ33360 protein; SubName: Full=cDNA FLJ33360 fis, clone BRACE2005253;												0						AAGACGGGTCCCTCCAGCCTG	0.587													4	2					0	0	0.000248	0	0
DNAH5	1767	broad.mit.edu	37	5	13776579	13776579	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:13776579G>A	uc003jfd.2	-	55	9384	c.9342C>T	c.(9340-9342)TTC>TTT	p.F3114F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3114	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCCATCGGCTGAACCAGTCAA	0.448									Kartagener_syndrome				104	42					0	0	0.003610	0	0
FBXL7	23194	broad.mit.edu	37	5	15936668	15936668	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:15936668C>T	uc003jfn.1	+	4	1330	c.849C>T	c.(847-849)TTC>TTT	p.F283F		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	283	LRR 5.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						CGGACTGCTTCGTGCTGGAGG	0.617													32	23					0	0	0.004289	0	0
CDH9	1007	broad.mit.edu	37	5	26881369	26881369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:26881369G>A	uc003jgs.1	-	12	2415	c.2246C>T	c.(2245-2247)TCG>TTG	p.S749L	CDH9_uc011cnv.1_Missense_Mutation_p.S342L	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	749	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						AGAACTGAGCGAATCTGCTAT	0.443													48	36					0	0	0.003610	0	0
CDH6	1004	broad.mit.edu	37	5	31299719	31299719	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:31299719C>T	uc003jhe.1	+	5	1118	c.792C>T	c.(790-792)AAC>AAT	p.N264N	CDH6_uc003jhd.1_Silent_p.N264N	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	264	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						TCAACGACAACCCTCCCCGAT	0.428													30	29					0	0	0.004289	0	0
PDZD2	23037	broad.mit.edu	37	5	32010454	32010454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:32010454C>T	uc003jhl.2	+	6	1661	c.1273C>T	c.(1273-1275)CTC>TTC	p.L425F	PDZD2_uc003jhm.2_Missense_Mutation_p.L425F|PDZD2_uc011cnx.1_Missense_Mutation_p.L251F	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	425					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CGCAGAGGACCTCCTCAGGTT	0.512													43	102					0	0	0.003610	0	0
SPEF2	79925	broad.mit.edu	37	5	35793314	35793314	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:35793314G>A	uc003jjo.2	+	32	4719	c.4608G>A	c.(4606-4608)CGG>CGA	p.R1536R	SPEF2_uc003jjp.1_Silent_p.R1022R|SPEF2_uc003jjr.2_Silent_p.R591R	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1536					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TGGACTGGCGGAAGTTCCTGT	0.438													18	49					0	0	0.007413	0	0
EGFLAM	133584	broad.mit.edu	37	5	38427288	38427288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:38427288C>T	uc003jlc.1	+	14	2312	c.1988C>T	c.(1987-1989)TCC>TTC	p.S663F	EGFLAM_uc003jlb.1_Missense_Mutation_p.S663F|EGFLAM_uc003jle.1_Missense_Mutation_p.S429F|EGFLAM_uc003jlf.1_Missense_Mutation_p.S29F	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	663	Laminin G-like 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GACTTCCTGTCCATCAACTTG	0.527													65	120					0	0	0.003610	0	0
FYB	2533	broad.mit.edu	37	5	39202935	39202935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:39202935C>T	uc003jls.2	-	1	195	c.128G>A	c.(127-129)GGA>GAA	p.G43E	FYB_uc003jlt.2_Missense_Mutation_p.G43E|FYB_uc003jlu.2_Missense_Mutation_p.G43E|FYB_uc011cpl.1_Missense_Mutation_p.G53E	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	43					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			GCTGGCATTTCCTTGGTTGTT	0.498													28	20					0	0	0.006320	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41004579	41004579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:41004579G>A	uc003jmj.3	-	37	4553	c.4063C>T	c.(4063-4065)CAC>TAC	p.H1355Y	HEATR7B2_uc003jmi.3_Missense_Mutation_p.H910Y	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1355							binding			ovary(6)|central_nervous_system(2)	8						CGAGCTAGGTGATACAGGCCT	0.403													16	55					0	0	0.004990	0	0
ITGA2	3673	broad.mit.edu	37	5	52379186	52379186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:52379186C>T	uc003joy.2	+	27	3304	c.3161C>T	c.(3160-3162)TCC>TTC	p.S1054F	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Missense_Mutation_p.S978F|ITGA2_uc011cqd.1_RNA|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	1054	Extracellular (Potential).				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				AGAACTGCTTCCTGTAGTAAT	0.318													17	40					0	0	0.004007	0	0
ANKRD55	79722	broad.mit.edu	37	5	55528733	55528733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:55528733C>T	uc003jqu.2	-	2	160	c.8G>A	c.(7-9)AGA>AAA	p.R3K		NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	2										skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				GGTAGCCTGTCTCATCATTTA	0.428													4	40					0	0	0.000248	0	0
RGS7BP	401190	broad.mit.edu	37	5	63871725	63871725	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:63871725C>T	uc003jtj.2	+	3	457	c.457C>T	c.(457-459)CGA>TGA	p.R153*	RGS7BP_uc011cqu.1_Nonsense_Mutation_p.R20*	NM_001029875	NP_001025046	Q6MZT1	R7BP_HUMAN	regulator of G-protein signaling 7 binding	153					negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane					0		Lung NSC(810;0.000518)|Prostate(74;0.0435)|Ovarian(174;0.186)		Lung(70;0.147)		TCAGTTTCATCGAAAAGGTAT	0.393													43	25					0	0	0.003610	0	0
ZNF366	167465	broad.mit.edu	37	5	71757125	71757125	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:71757125A>C	uc003kce.1	-	2	385	c.199T>G	c.(199-201)TTC>GTC	p.F67V		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	67					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		ACCCCGGGGAACCCATCTAGG	0.582													3	103					0	0	0.004672	0	0
F2RL1	2150	broad.mit.edu	37	5	76129575	76129575	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:76129575G>A	uc003keo.2	+	2	1318	c.1143G>A	c.(1141-1143)AGG>AGA	p.R381R		NM_005242	NP_005233	P55085	PAR2_HUMAN	coagulation factor II (thrombin) receptor-like 1	381	Cytoplasmic (Potential).				blood coagulation|elevation of cytosolic calcium ion concentration|positive regulation of leukocyte chemotaxis|positive regulation of positive chemotaxis|regulation of blood coagulation	Golgi apparatus|integral to plasma membrane	receptor binding|thrombin receptor activity			central_nervous_system(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;7.7e-51)|Epithelial(54;2.77e-45)|all cancers(79;3.47e-41)		AACACTCCAGGAAATCCAGCT	0.463													111	144					0	0	0.003610	0	0
LHFPL2	10184	broad.mit.edu	37	5	77805875	77805875	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:77805875C>T	uc003kfo.2	-	4	838	c.162G>A	c.(160-162)CCG>CCA	p.P54P		NM_005779	NP_005770	Q6ZUX7	LHPL2_HUMAN	lipoma HMGIC fusion partner-like 2	54						integral to membrane					0		all_lung(232;0.000409)|Lung NSC(167;0.00108)|Ovarian(174;0.0107)|Prostate(461;0.218)		OV - Ovarian serous cystadenocarcinoma(54;6.48e-46)|Epithelial(54;8.43e-42)|all cancers(79;1.42e-36)		GGTAGGGCTCCGGGGAgcccc	0.527													4	8					0	0	0.000248	0	0
DMGDH	29958	broad.mit.edu	37	5	78338173	78338173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:78338173G>A	uc003kfs.2	-	7	1132	c.1126C>T	c.(1126-1128)CCT>TCT	p.P376S	DMGDH_uc011cte.1_Missense_Mutation_p.P226S|DMGDH_uc011ctf.1_Missense_Mutation_p.P175S|DMGDH_uc011ctg.1_Intron	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	376					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		AGAATGTCAGGAGAATACGTG	0.438													20	21					0	0	0.008871	0	0
THBS4	7060	broad.mit.edu	37	5	79372803	79372803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:79372803C>T	uc003kgh.2	+	17	2341	c.2018C>T	c.(2017-2019)CCA>CTA	p.P673L	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	673	TSP type-3 7.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		GATGGTATCCCAGACCTGGTG	0.567													56	85					0	0	0.003610	0	0
CKMT2	1160	broad.mit.edu	37	5	80550260	80550260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:80550260G>A	uc003khc.3	+	5	639	c.397G>A	c.(397-399)GGC>AGC	p.G133S	RNU5E_uc011cto.1_Intron|CKMT2_uc010jaq.2_Missense_Mutation_p.G133S|CKMT2_uc003khd.3_Missense_Mutation_p.G133S|uc003khe.1_Intron|uc003khf.1_Intron|uc003khg.1_Intron	NM_001825	NP_001816	P17540	KCRS_HUMAN	sarcomeric mitochondrial creatine kinase	133					creatine metabolic process|muscle contraction	mitochondrial inner membrane	ATP binding|creatine kinase activity				0		Lung NSC(167;0.00475)|all_lung(232;0.00502)|Ovarian(174;0.0336)		OV - Ovarian serous cystadenocarcinoma(54;2.29e-44)|Epithelial(54;1.05e-38)|all cancers(79;4.15e-34)	Creatine(DB00148)	AAGACACAACGGCTATGACCC	0.517													21	26					0	0	0.001882	0	0
GPR98	84059	broad.mit.edu	37	5	89949605	89949605	+	Missense_Mutation	SNP	C	T	T	rs41305898		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:89949605C>T	uc003kju.2	+	20	4310	c.4214C>T	c.(4213-4215)TCC>TTC	p.S1405F	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1405	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ACCTTGGGTTCCAATGCTACA	0.378													10	24					0	0	0.008291	0	0
GPR98	84059	broad.mit.edu	37	5	89989777	89989777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:89989777G>A	uc003kju.2	+	33	7300	c.7204G>A	c.(7204-7206)GAG>AAG	p.E2402K	GPR98_uc003kjt.2_Missense_Mutation_p.E108K|GPR98_uc003kjv.2_Missense_Mutation_p.E2K	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2402	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TCTGGCAATGGAGGAAGGTCA	0.483													17	9					0	0	0.004990	0	0
NR2F1	7025	broad.mit.edu	37	5	92923686	92923686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:92923686G>A	uc003kkj.2	+	2	2214	c.527G>A	c.(526-528)GGG>GAG	p.G176E		NM_005654	NP_005645	P10589	COT1_HUMAN	nuclear receptor subfamily 2, group F, member 1	176					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			urinary_tract(1)|ovary(1)|lung(1)	3		all_cancers(142;1.62e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0416)|all cancers(79;9.57e-18)		CTCACCAACGGGGACCCCCTC	0.607													44	28					0	0	0.003610	0	0
NR2F1	7025	broad.mit.edu	37	5	92929449	92929450	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:92929449_92929450CC>TT	uc003kkj.2	+	3	2860_2861	c.1173_1174CC>TT	c.(1171-1176)GTCCGT>GTTTGT	p.R392C		NM_005654	NP_005645	P10589	COT1_HUMAN	nuclear receptor subfamily 2, group F, member 1	392					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			urinary_tract(1)|ovary(1)|lung(1)	3		all_cancers(142;1.62e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0416)|all cancers(79;9.57e-18)		TCTTCTTCGTCCGTTTGGTAGG	0.569													64	42					0	0	0.004672	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111506681	111506681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:111506681G>A	uc003kpv.1	-	19	1905	c.1631C>T	c.(1630-1632)CCC>CTC	p.P544L	EPB41L4A_uc003kpp.1_Missense_Mutation_p.P171L|EPB41L4A_uc003kpu.1_5'Flank	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	544						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		TTGGATATCGGGGCTTCTCCT	0.333													20	47					0	0	0.001882	0	0
ATG12	9140	broad.mit.edu	37	5	115173368	115173368	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:115173368T>C	uc003krh.2	-	2	507	c.398A>G	c.(397-399)GAC>GGC	p.D133G	ATG12_uc003kri.2_Intron|ATG12_uc003krj.2_RNA	NM_004707	NP_004698	O94817	ATG12_HUMAN	APG12 autophagy 12-like	86					autophagic vacuole assembly|negative regulation of type I interferon production	pre-autophagosomal structure membrane	protein binding				0		all_cancers(142;0.00377)|all_epithelial(76;0.000129)|Prostate(80;0.0132)|Ovarian(225;0.0776)|Lung NSC(810;0.245)		OV - Ovarian serous cystadenocarcinoma(64;7.59e-08)|Epithelial(69;7.05e-07)|all cancers(49;3.11e-05)		TTTGATGAAGTCAATGAGTCC	0.398													34	19					0	0	0.004289	0	0
SNCAIP	9627	broad.mit.edu	37	5	121758943	121758943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:121758943G>A	uc003ksw.1	+	4	717	c.511G>A	c.(511-513)GTG>ATG	p.V171M	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Missense_Mutation_p.V171M|SNCAIP_uc003ksx.1_Missense_Mutation_p.V218M|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Missense_Mutation_p.V171M	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	171					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		TTTTACCAAGGTGACTTCAGA	0.458													37	39					0	0	0.006230	0	0
RAPGEF6	51735	broad.mit.edu	37	5	130769216	130769216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:130769216G>A	uc003kvn.1	-	25	4087	c.3881C>T	c.(3880-3882)TCC>TTC	p.S1294F	RAPGEF6_uc003kvp.1_Missense_Mutation_p.S1344F|RAPGEF6_uc003kvo.1_Missense_Mutation_p.S1307F|RAPGEF6_uc010jdi.1_Missense_Mutation_p.S1302F|RAPGEF6_uc010jdj.1_Missense_Mutation_p.S1302F|RAPGEF6_uc003kvm.1_Missense_Mutation_p.S217F	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	1294	Ser-rich.				Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		GGCCTGAGAGGAACACCGTTC	0.517													19	22					0	0	0.008871	0	0
AFF4	27125	broad.mit.edu	37	5	132270167	132270167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:132270167G>A	uc003kyd.2	-	3	998	c.590C>T	c.(589-591)TCT>TTT	p.S197F	AFF4_uc011cxk.1_5'UTR|AFF4_uc003kye.1_Missense_Mutation_p.S197F|AFF4_uc003kyf.3_Missense_Mutation_p.S197F	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	197	Ser-rich.				transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ATTCCCATGAGACCTGGAATG	0.478													4	60					0	0	0.000248	0	0
FSTL4	23105	broad.mit.edu	37	5	132552948	132552948	+	Silent	SNP	G	A	A	rs111394662		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:132552948G>A	uc003kyn.1	-	13	1799	c.1581C>T	c.(1579-1581)GTC>GTT	p.V527V	FSTL4_uc003kym.1_Silent_p.V176V	NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	527						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTTGGATGTCGACCACAAGGA	0.502													33	27					0	0	0.004878	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475885	140475885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:140475885C>T	uc003lil.2	+	1	1649	c.1511C>T	c.(1510-1512)TCC>TTC	p.S504F	PCDHB2_uc003lim.1_Missense_Mutation_p.S165F	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	504	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCCTCGCCTCCCTGGTCTCC	0.687													43	42					0	0	0.003610	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501933	140501933	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:140501933G>A	uc003lip.1	+	1	353	c.353G>A	c.(352-354)GGA>GAA	p.G118E		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	118	Cadherin 1.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTTTTTCAAGGAGAATTATTG	0.433													23	23					0	0	0.001882	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140739823	140739823	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:140739823C>T	uc003ljs.1	+	1	121	c.121C>T	c.(121-123)CTG>TTG	p.L41L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc011dar.1_Silent_p.L41L	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	41	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCAGAGGAGCTGGCCAAAAA	0.607											OREG0016857	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	17					0	0	0.004990	0	0
SPINK5	11005	broad.mit.edu	37	5	147469129	147469129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:147469129C>T	uc003lox.2	+	7	620	c.547C>T	c.(547-549)CTT>TTT	p.L183F	SPINK5_uc010jgq.1_RNA|SPINK5_uc010jgs.1_Missense_Mutation_p.L155F|SPINK5_uc010jgr.2_Missense_Mutation_p.L164F|SPINK5_uc003low.2_Missense_Mutation_p.L183F|SPINK5_uc003loy.2_Missense_Mutation_p.L183F	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	183	Kazal-like 3.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGATCCTGTTCTTGGTCCTGA	0.463													41	37					0	0	0.002222	0	0
SLC36A2	153201	broad.mit.edu	37	5	150718687	150718687	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:150718687G>A	uc003lty.2	-	5	589	c.459C>T	c.(457-459)TTC>TTT	p.F153F	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_Intron|SLC36A2_uc003lua.2_Intron|SLC36A2_uc010jhv.2_Silent_p.F153F|SLC36A2_uc011dct.1_Silent_p.F153F	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	153	Helical; (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGATAATAAGGAAGAAGCTCA	0.403													32	35					0	0	0.003271	0	0
KIF4B	285643	broad.mit.edu	37	5	154394968	154394968	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:154394968C>T	uc010jih.1	+	1	1709	c.1549C>T	c.(1549-1551)CTC>TTC	p.L517F		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	517	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TCAGCATGCTCTCCATCAAGC	0.493													21	27					0	0	0.008871	0	0
TIMD4	91937	broad.mit.edu	37	5	156378700	156378700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:156378700G>A	uc003lwh.2	-	3	559	c.502C>T	c.(502-504)CCA>TCA	p.P168S	TIMD4_uc010jii.2_Missense_Mutation_p.P168S	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	168	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ACTGTTGTTGGAAGTGCAGCT	0.527													17	565					0	0	0.007413	0	0
CYFIP2	26999	broad.mit.edu	37	5	156760372	156760372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:156760372C>T	uc003lwq.2	+	23	2441	c.2303C>T	c.(2302-2304)ACC>ATC	p.T768I	CYFIP2_uc011ddn.1_Missense_Mutation_p.T742I|CYFIP2_uc011ddo.1_Missense_Mutation_p.T572I|CYFIP2_uc003lwr.2_Missense_Mutation_p.T768I|CYFIP2_uc003lws.2_Missense_Mutation_p.T768I|CYFIP2_uc003lwt.2_Missense_Mutation_p.T671I|CYFIP2_uc011ddp.1_Missense_Mutation_p.T502I	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	793					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGACTCATTACCCAGCGCATC	0.418													18	350					0	0	0.004990	0	0
SOX30	11063	broad.mit.edu	37	5	157065624	157065624	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:157065624C>T	uc003lxb.1	-	4	1836	c.1494G>A	c.(1492-1494)CAG>CAA	p.Q498Q	SOX30_uc003lxc.1_Intron|SOX30_uc011dds.1_Silent_p.Q193Q	NM_178424	NP_848511	O94993	SOX30_HUMAN	SRY (sex determining region Y)-box 30 isoform a	498					regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|response to corticosteroid stimulus|transcription, DNA-dependent	nucleus|nucleus	sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)|central_nervous_system(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GACTTGGATCCTGGACAGCCA	0.577													4	25					0	0	0.000602	0	0
GABRA6	2559	broad.mit.edu	37	5	161119131	161119131	+	Silent	SNP	G	A	A	rs144044129		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:161119131G>A	uc003lyu.2	+	8	1349	c.1011G>A	c.(1009-1011)AGG>AGA	p.R337R	GABRA6_uc003lyv.2_Silent_p.R108R	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	337	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity	p.R337R(1)		ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AGGCCAAAAGGAAGGCACAGT	0.418										TCGA Ovarian(5;0.080)			24	18					0	0	0.003330	0	0
RANBP17	64901	broad.mit.edu	37	5	170610355	170610355	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:170610355T>G	uc003mba.2	+	18	1975	c.1959T>G	c.(1957-1959)AGT>AGG	p.S653R	RANBP17_uc003mbb.2_5'UTR|RANBP17_uc003mbd.2_Missense_Mutation_p.S16R|RANBP17_uc010jjs.2_RNA|RANBP17_uc003mbc.2_Missense_Mutation_p.S16R	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	653					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TTGGCATCAGTGACAATCATA	0.388			T	TRD@	ALL								21	40					0	0	0.003330	0	0
RANBP17	64901	broad.mit.edu	37	5	170640706	170640706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:170640706C>T	uc003mba.2	+	21	2319	c.2303C>T	c.(2302-2304)CCC>CTC	p.P768L	RANBP17_uc003mbb.2_Missense_Mutation_p.P93L|RANBP17_uc003mbd.2_Missense_Mutation_p.P131L|RANBP17_uc010jjs.2_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	768					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TGTACAACTCCCATCTTGAAA	0.418			T	TRD@	ALL								101	78					0	0	0.003610	0	0
C5orf41	153222	broad.mit.edu	37	5	172517345	172517345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:172517345C>T	uc003mch.2	+	4	467	c.163C>T	c.(163-165)CCT>TCT	p.P55S	C5orf41_uc003mcg.2_Missense_Mutation_p.P55S|C5orf41_uc003mcf.2_Missense_Mutation_p.P55S|C5orf41_uc011dfd.1_Missense_Mutation_p.P55S	NM_153607	NP_705835	Q8IUR6	CE041_HUMAN	luman-recruiting factor	55							protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(175;0.000159)|Lung NSC(126;0.00223)|all_lung(126;0.00391)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CCAACAGAATCCTAGAGACAA	0.373													18	20					0	0	0.007413	0	0
COL23A1	91522	broad.mit.edu	37	5	177676175	177676175	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:177676175C>T	uc003mje.2	-	19	1450	c.1092G>A	c.(1090-1092)GAG>GAA	p.E364E	COL23A1_uc010jkt.2_Silent_p.E246E	NM_173465	NP_775736	Q86Y22	CONA1_HUMAN	collagen, type XXIII, alpha 1	364	Extracellular (Potential).|Collagen-like 3.|Gly-rich.					collagen|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)|skin(1)	2	all_cancers(89;0.00188)|Renal(175;0.000159)|Lung NSC(126;0.00814)|all_lung(126;0.0129)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.153)|all cancers(165;0.172)		CTGGCCCAGGCTCTCCTGGGT	0.627													85	252					0	0	0.003610	0	0
COL23A1	91522	broad.mit.edu	37	5	177690292	177690292	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:177690292G>A	uc003mje.2	-	9	914	c.556C>T	c.(556-558)CCG>TCG	p.P186S	COL23A1_uc010jkt.2_Silent_p.L33L	NM_173465	NP_775736	Q86Y22	CONA1_HUMAN	collagen, type XXIII, alpha 1	186	Extracellular (Potential).|Collagen-like 1.|Gly-rich.					collagen|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)|skin(1)	2	all_cancers(89;0.00188)|Renal(175;0.000159)|Lung NSC(126;0.00814)|all_lung(126;0.0129)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.153)|all cancers(165;0.172)		GGGGGCCCCGGAGGCCCAGCA	0.672													24	26					0	0	0.002780	0	0
ZNF454	285676	broad.mit.edu	37	5	178392301	178392301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:178392301C>T	uc003mjo.1	+	5	1167	c.896C>T	c.(895-897)CCT>CTT	p.P299L	ZNF454_uc010jkz.1_Missense_Mutation_p.P299L	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	299					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		GGAGAGAAACCTTTTAAATGT	0.383													20	63					0	0	0.008871	0	0
TBC1D9B	23061	broad.mit.edu	37	5	179315211	179315211	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:179315211G>A	uc003mlh.2	-	7	1183	c.1146C>T	c.(1144-1146)GAC>GAT	p.D382D	TBC1D9B_uc003mli.2_Silent_p.D382D|TBC1D9B_uc003mlj.2_Silent_p.D382D	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	382						integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGAAATCACGGTCTTTCAGGT	0.522													28	135					0	0	0.005443	0	0
FLT4	2324	broad.mit.edu	37	5	180056974	180056974	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr5:180056974G>A	uc003mma.3	-	5	724	c.645C>T	c.(643-645)TTC>TTT	p.F215F	FLT4_uc003mlz.3_Silent_p.F215F|FLT4_uc003mmb.1_5'Flank|FLT4_uc011dgy.1_Silent_p.F215F|FLT4_uc011dgz.1_Silent_p.F215F|FLT4_uc011dha.1_Missense_Mutation_p.S199F	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	215	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GGTTGGAAAGGAAGTCCTGGT	0.632									Congenital_Hereditary_Lymphedema				16	33					0	0	0.004990	0	0
WRNIP1	56897	broad.mit.edu	37	6	2770558	2770558	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:2770558A>G	uc003mtz.2	+	3	1410	c.1219A>G	c.(1219-1221)ACT>GCT	p.T407A	WRNIP1_uc003mua.2_Missense_Mutation_p.T382A	NM_020135	NP_064520	Q96S55	WRIP1_HUMAN	Werner helicase interacting protein isoform 1	407					DNA replication|DNA synthesis involved in DNA repair|regulation of DNA-dependent DNA replication initiation	mitochondrion|nucleus|perinuclear region of cytoplasm	ATP binding|ATPase activity|DNA binding|metal ion binding|protein binding			ovary(1)|pancreas(1)	2	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				TAGCCGTCCCACTGACCCTCT	0.552													33	55					0	0	0.002836	0	0
RIOK1	83732	broad.mit.edu	37	6	7403060	7403060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:7403060G>A	uc003mxn.2	+	8	871	c.697G>A	c.(697-699)GGC>AGC	p.G233S	RIOK1_uc003mxm.1_Missense_Mutation_p.G129S|RIOK1_uc003mxo.2_5'UTR	NM_031480	NP_113668	Q9BRS2	RIOK1_HUMAN	RIO kinase 1 isoform 1	233	Protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|skin(1)	4	Ovarian(93;0.0418)					ATTTCGTCATGGCTATTGTAA	0.323													16	61					0	0	0.004990	0	0
DSP	1832	broad.mit.edu	37	6	7583627	7583627	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:7583627C>T	uc003mxp.1	+	24	6411	c.6132C>T	c.(6130-6132)TCC>TCT	p.S2044S	DSP_uc003mxq.1_Silent_p.S1445S	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2044	Plectin 1.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GCCCAGAATCCACAGTCATGC	0.502													26	146					0	0	0.005443	0	0
MUTED	63915	broad.mit.edu	37	6	8064587	8064587	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:8064587G>C	uc003mxy.2	-	1	61	c.23C>G	c.(22-24)ACC>AGC	p.T8S	TXNDC5_uc003mxw.2_5'UTR|MUTED_uc010joc.2_5'UTR|MUTED_uc010job.2_RNA	NM_201280	NP_958437	Q8TDH9	MUTED_HUMAN	muted	8						BLOC-1 complex	protein binding				0	Ovarian(93;0.0398)					ACCCACAGGGGTCTCTGTCCC	0.692													6	54					0	0	0.004482	0	0
GCM2	9247	broad.mit.edu	37	6	10875048	10875048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:10875048G>A	uc003mzn.3	-	5	773	c.701C>T	c.(700-702)TCC>TTC	p.S234F	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	234					cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				CTTTGGGAAGGAAGGGCAAGG	0.453													56	73					0	0	0.003610	0	0
HIVEP1	3096	broad.mit.edu	37	6	12121520	12121520	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:12121520G>T	uc003nac.2	+	4	1671	c.1492G>T	c.(1492-1494)GAA>TAA	p.E498*	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	498					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				GAGCGAGGAGGAAGGCGCCAC	0.502													27	39					7.92952e-12	8.89786e-12	0.003954	1	0
HIVEP1	3096	broad.mit.edu	37	6	12121894	12121894	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:12121894C>T	uc003nac.2	+	4	2045	c.1866C>T	c.(1864-1866)TCC>TCT	p.S622S	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	622					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				ATGAGAATTCCCACCAGAAAG	0.522													49	84					0	0	0.003610	0	0
DTNBP1	84062	broad.mit.edu	37	6	15533578	15533578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:15533578G>A	uc003nbm.2	-	8	731	c.560C>T	c.(559-561)ACC>ATC	p.T187I	DTNBP1_uc003nbl.2_Missense_Mutation_p.T106I|DTNBP1_uc003nbn.2_RNA|DTNBP1_uc003nbo.2_RNA|DTNBP1_uc003nbp.2_Missense_Mutation_p.T187I|DTNBP1_uc010jph.2_Missense_Mutation_p.T174I	NM_032122	NP_115498	Q96EV8	DTBP1_HUMAN	dystrobrevin binding protein 1 isoform a	187	Dysbindin.				actin cytoskeleton reorganization|cellular membrane organization|neuron projection morphogenesis|post-Golgi vesicle-mediated transport|regulation of dopamine receptor signaling pathway	axon part|BLOC-1 complex|cell junction|dendritic spine|endoplasmic reticulum membrane|endosome membrane|growth cone|melanosome membrane|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|synaptic vesicle membrane|synaptosome	identical protein binding				0	Breast(50;0.0289)|Ovarian(93;0.103)	all_hematologic(90;0.0895)	Epithelial(50;0.211)			CATTTGCTGGGTGTGCTCCAT	0.517									Hermansky-Pudlak_syndrome				71	275					0	0	0.003610	0	0
KIF13A	63971	broad.mit.edu	37	6	17837293	17837293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:17837293G>A	uc003ncg.3	-	11	1076	c.971C>T	c.(970-972)TCT>TTT	p.S324F	KIF13A_uc003ncf.2_Missense_Mutation_p.S324F|KIF13A_uc003nch.3_Missense_Mutation_p.S324F|KIF13A_uc003nci.3_Missense_Mutation_p.S324F|KIF13A_uc003ncj.2_5'UTR	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	324					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			GGCTATCATAGAGGTTTGGCT	0.458													175	123					0	0	0.003610	0	0
KIAA0319	9856	broad.mit.edu	37	6	24554805	24554805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:24554805C>T	uc011djo.1	-	19	3149	c.2912G>A	c.(2911-2913)GGA>GAA	p.G971E	KIAA0319_uc011djp.1_Missense_Mutation_p.G926E|KIAA0319_uc003neh.1_Missense_Mutation_p.G971E|KIAA0319_uc011djq.1_Missense_Mutation_p.G962E|KIAA0319_uc011djr.1_Intron|KIAA0319_uc010jpt.1_Missense_Mutation_p.G382E	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	971	Helical; (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						AGTGAAACCTCCTGTTAGCAC	0.413													75	260					0	0	0.003610	0	0
KIAA0319	9856	broad.mit.edu	37	6	24581172	24581172	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:24581172T>G	uc011djo.1	-	7	1498	c.1261A>C	c.(1261-1263)AAT>CAT	p.N421H	KIAA0319_uc011djp.1_Missense_Mutation_p.N376H|KIAA0319_uc003neh.1_Missense_Mutation_p.N421H|KIAA0319_uc011djq.1_Missense_Mutation_p.N412H|KIAA0319_uc011djr.1_Missense_Mutation_p.N421H|KIAA0319_uc010jpt.1_5'UTR	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	421	PKD 1.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						ACAGTGACATTGACAAATCCT	0.393											OREG0017229	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	56	199					0	0	0.003610	0	0
LRRC16A	55604	broad.mit.edu	37	6	25450225	25450225	+	Splice_Site	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:25450225T>G	uc011djw.1	+	6	845	c.469_splice	c.e6+2	p.G157_splice	LRRC16A_uc010jpx.2_Splice_Site_p.G157_splice|LRRC16A_uc010jpy.2_Splice_Site_p.G157_splice|LRRC16A_uc003nez.1_5'Flank	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A						actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						GCCCCTGTGGTGAGCATGCAT	0.507													5	51					0	0	0.001168	0	0
SLC17A1	6568	broad.mit.edu	37	6	25819819	25819819	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:25819819A>G	uc003nfh.3	-	5	565	c.449T>C	c.(448-450)GTT>GCT	p.V150A	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Missense_Mutation_p.V148A|SLC17A1_uc010jqc.1_Missense_Mutation_p.V148A	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	150					sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						GGCTGTTGCAACTATCCCCTG	0.388													25	70					0	0	0.002780	0	0
BTN1A1	696	broad.mit.edu	37	6	26509046	26509046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:26509046C>T	uc003nif.3	+	7	1245	c.1225C>T	c.(1225-1227)CTC>TTC	p.L409F		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	409	B30.2/SPRY.|Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						CCTCACTCCTCTCCGGACCCC	0.517													16	91					0	0	0.004990	0	0
ZNF322A	79692	broad.mit.edu	37	6	26638664	26638664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:26638664C>T	uc003nil.3	-	4	747	c.118G>A	c.(118-120)GGT>AGT	p.G40S	ZNF322A_uc003nij.2_5'Flank	NM_024639	NP_078915	Q6U7Q0	Z322A_HUMAN	zinc finger protein 322A	40					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding				0						TATATATGACCATCTATCTGA	0.338													66	315					0	0	0.003610	0	0
ZNF184	7738	broad.mit.edu	37	6	27419353	27419353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:27419353C>T	uc003njj.2	-	5	2796	c.1985G>A	c.(1984-1986)CGA>CAA	p.R662Q	ZNF184_uc010jqv.2_Missense_Mutation_p.R662Q|ZNF184_uc003nji.2_Missense_Mutation_p.R662Q	NM_007149	NP_009080	Q99676	ZN184_HUMAN	zinc finger protein 184	662	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGTGTGAATTCGTTGATGCTG	0.428													24	116					0	0	0.005443	0	0
OR2B2	81697	broad.mit.edu	37	6	27879209	27879209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:27879209C>T	uc011dkw.1	-	1	889	c.889G>A	c.(889-891)GTA>ATA	p.V297I		NM_033057	NP_149046	Q9GZK3	OR2B2_HUMAN	olfactory receptor, family 2, subfamily B,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCTTCCTTTACCTCTTTGTTC	0.388													17	104					0	0	0.004990	0	0
GPX6	257202	broad.mit.edu	37	6	28473543	28473543	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:28473543G>A	uc011dlj.1	-	5	446	c.396C>T	c.(394-396)TTC>TTT	p.F132F	GPX6_uc010jrg.1_Intron	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	132					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	CAAAGAGCTGGAAACTGGGGA	0.438													26	119					0	0	0.005443	0	0
GPX6	257202	broad.mit.edu	37	6	28473551	28473551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:28473551G>A	uc011dlj.1	-	5	438	c.388C>T	c.(388-390)CCC>TCC	p.P130S	GPX6_uc010jrg.1_Intron	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	130					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	TGGAAACTGGGGACAAAGCCA	0.443													24	118					0	0	0.002780	0	0
SCAND3	114821	broad.mit.edu	37	6	28542663	28542663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:28542663C>T	uc003nlo.2	-	3	2437	c.1819G>A	c.(1819-1821)GAA>AAA	p.E607K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	607					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CATTCTTTTTCACAAACTACA	0.418													21	43					0	0	0.001523	0	0
ZNF311	282890	broad.mit.edu	37	6	28963462	28963462	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:28963462C>T	uc003nlu.2	-	7	1830	c.1317G>A	c.(1315-1317)CGG>CGA	p.R439R	ZNF311_uc011dlk.1_Silent_p.R347R|ZNF311_uc003nlv.2_Silent_p.R347R	NM_001010877	NP_001010877	Q5JNZ3	ZN311_HUMAN	zinc finger protein 311	439					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						AGTGTTTCTCCCGAGTATGGA	0.488													32	85					0	0	0.004289	0	0
OR2B3	442184	broad.mit.edu	37	6	29054298	29054298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:29054298G>A	uc003nlx.2	-	1	793	c.728C>T	c.(727-729)TCC>TTC	p.S243F		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						AATCATGTGGGACCCACATGT	0.453													23	22					0	0	0.001882	0	0
OR2J3	442186	broad.mit.edu	37	6	29079884	29079884	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:29079884G>A	uc011dll.1	+	1	217	c.217G>A	c.(217-219)GAT>AAT	p.D73N		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	73	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTCATTTCTGGATCTCTGCTA	0.463													68	173					0	0	0.003610	0	0
OR2J3	442186	broad.mit.edu	37	6	29080253	29080253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:29080253C>T	uc011dll.1	+	1	586	c.586C>T	c.(586-588)CAT>TAT	p.H196Y		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTTGATACCCATGTCAATGA	0.463													23	77					0	0	0.002299	0	0
OR12D3	81797	broad.mit.edu	37	6	29342328	29342328	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:29342328A>C	uc003nme.2	-	1	741	c.737T>G	c.(736-738)GTG>GGG	p.V246G		NM_030959	NP_112221	Q9UGF7	O12D3_HUMAN	olfactory receptor, family 12, subfamily D,	246	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3						AAGACATACCACCATAAAATG	0.473													9	31					0	0	0.004482	0	0
MOG	4340	broad.mit.edu	37	6	29625047	29625047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:29625047C>T	uc003nnf.2	+	1	239	c.61C>T	c.(61-63)CTC>TTC	p.L21F	MOG_uc003qzk.1_Missense_Mutation_p.L21F|MOG_uc010kle.1_RNA|MOG_uc010klf.1_RNA|MOG_uc003nmy.1_Missense_Mutation_p.L21F|MOG_uc003nmz.2_Missense_Mutation_p.L21F|MOG_uc011dlt.1_5'UTR|MOG_uc003nna.2_Missense_Mutation_p.L21F|MOG_uc011dlu.1_Missense_Mutation_p.L21F|MOG_uc011dlv.1_Missense_Mutation_p.L21F|MOG_uc003nnd.2_Missense_Mutation_p.L21F|MOG_uc003nne.2_Missense_Mutation_p.L21F|MOG_uc003nng.2_Missense_Mutation_p.L21F|MOG_uc003nnh.2_Missense_Mutation_p.L21F|MOG_uc003nni.2_Missense_Mutation_p.L21F|MOG_uc003nnj.2_Missense_Mutation_p.L21F|MOG_uc003nnk.2_Missense_Mutation_p.L21F	NM_206809	NP_996532	Q16653	MOG_HUMAN	myelin oligodendrocyte glycoprotein isoform	21					cell adhesion|central nervous system development|positive regulation of MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)	1						cctcctcctcctcctccAAGT	0.483													11	16					0	0	0.000978	0	0
LY6G6F	259215	broad.mit.edu	37	6	31678155	31678155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:31678155G>A	uc003nwa.1	+	5	829	c.829G>A	c.(829-831)GAA>AAA	p.E277K	BAT5_uc011dnz.1_Intron|LY6G6F_uc003nwb.1_Intron	NM_001003693	NP_001003693	Q5SQ64	LY66F_HUMAN	G6f protein precursor	277	Cytoplasmic (Potential).					integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)	2						GTTCAAACCCGAAATCCAGGT	0.537													171	498					0	0	0.003610	0	0
C6orf27	80737	broad.mit.edu	37	6	31741213	31741213	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:31741213C>T	uc011dog.1	-	6	961	c.723G>A	c.(721-723)GGG>GGA	p.G241G	C6orf27_uc003nxd.2_Intron|C6orf27_uc011doh.1_Intron	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	241						extracellular region				ovary(3)	3						GGCTACATTTCCCTGGGTTGG	0.597													92	260					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779702	31779702	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:31779702G>A	uc003nxh.2	-	2	231	c.48C>T	c.(46-48)ACC>ACT	p.T16T	HSPA1L_uc010jte.2_Silent_p.T16T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	16					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CACAGGAGTAGGTGGTGCCCA	0.572													88	360					0	0	0.003610	0	0
EHMT2	10919	broad.mit.edu	37	6	31855988	31855988	+	Silent	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:31855988A>T	uc003nxz.1	-	13	1585	c.1575T>A	c.(1573-1575)TCT>TCA	p.S525S	EHMT2_uc003nxx.1_5'Flank|EHMT2_uc003nxy.1_Silent_p.S316S|EHMT2_uc011don.1_Silent_p.S548S|EHMT2_uc003nya.1_Silent_p.S491S	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	525					DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1						CATTCAGCTGAGACACACAGG	0.627													85	351					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	31980116	31980116	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:31980116C>A	uc011dpc.1	-	1	936	c.27G>T	c.(25-27)CAG>CAT	p.Q9H	STK19_uc003nza.2_5'Flank|STK19_uc003nzb.2_5'Flank	NM_032470	NP_115859	P22105	TENX_HUMAN	tenascin XB isoform 2	3625	Fibronectin type-III 28.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CAAAGGGGCCCTGGGCCACGC	0.647													7	231					0.00307968	0.00343862	0.003080	1	0
TNXB	7148	broad.mit.edu	37	6	32046847	32046847	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:32046847C>T	uc003nzl.2	-	11	4540	c.4338G>A	c.(4336-4338)GGG>GGA	p.G1446G		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1533	Fibronectin type-III 7.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCACGCGCTGCCCCTCGTGGA	0.687													44	190					0	0	0.002522	0	0
HLA-DQB1	3119	broad.mit.edu	37	6	32632738	32632738	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:32632738G>A	uc003obw.2	-	2	298	c.216C>T	c.(214-216)TTC>TTT	p.F72F	HLA-DQB1_uc010juc.1_Silent_p.F27F|HLA-DQB1_uc003obv.2_Silent_p.F72F|HLA-DQB1_uc011dqd.1_Silent_p.F72F|HLA-DQB1_uc011dqe.1_Silent_p.F72F	NM_002123	NP_002114	P01920	DQB1_HUMAN	major histocompatibility complex, class II, DQ	72	Extracellular (Potential).|Beta-1.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CGTCGCTGTCGAAGCGCGCGT	0.627									Melanoma_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia|T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Sj_gren_syndrome				44	68					0	0	0.002852	0	0
ZBTB22	9278	broad.mit.edu	37	6	33283465	33283465	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:33283465G>C	uc003oeb.2	-	2	1381	c.1229C>G	c.(1228-1230)TCC>TGC	p.S410C	TAPBP_uc003odx.1_5'Flank|TAPBP_uc010jus.1_5'Flank|TAPBP_uc003ody.2_5'Flank|TAPBP_uc003odz.2_5'Flank|TAPBP_uc010jut.1_5'Flank|TAPBP_uc011drc.1_5'Flank|ZBTB22_uc010juu.2_Missense_Mutation_p.S410C	NM_005453	NP_005444	O15209	ZBT22_HUMAN	zinc finger and BTB domain containing 22	410					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGGAGGGTGGGAGGGGGCATA	0.597													49	156					0	0	0.003610	0	0
PHF1	5252	broad.mit.edu	37	6	33383373	33383373	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:33383373C>T	uc003oeh.2	+	14	1577	c.1341C>T	c.(1339-1341)CCC>CCT	p.P447P	PHF1_uc011drh.1_RNA|PHF1_uc003oei.2_Missense_Mutation_p.P412L|PHF1_uc010jux.2_Silent_p.P247P	NM_024165	NP_077084	O43189	PHF1_HUMAN	PHD finger protein 1 isoform b	447					chromatin modification	nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(999;0.0443)				CCAGCAGCCCCATCCGGATGT	0.587													39	116					0	0	0.002222	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33410236	33410236	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:33410236C>T	uc011dri.1	+	14	2496	c.2301C>T	c.(2299-2301)ATC>ATT	p.I767I	SYNGAP1_uc010juy.2_Intron|SYNGAP1_uc010juz.2_Silent_p.I479I	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	767					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						CCAGCTCCATCGACCTTCAGT	0.403													46	129					0	0	0.003610	0	0
SLC26A8	116369	broad.mit.edu	37	6	35928780	35928780	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:35928780G>A	uc003olm.2	-	13	1669	c.1558C>T	c.(1558-1560)CGT>TGT	p.R520C	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.R102C|SLC26A8_uc003oln.2_Missense_Mutation_p.R520C|SLC26A8_uc003oll.2_Missense_Mutation_p.R415C	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	520	Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						CTGTGTGAACGAACAGTGGTG	0.413													16	39					0	0	0.004007	0	0
PNPLA1	285848	broad.mit.edu	37	6	36270181	36270181	+	Missense_Mutation	SNP	G	A	A	rs144648025		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:36270181G>A	uc010jwf.2	+	6	1319	c.1319G>A	c.(1318-1320)CGA>CAA	p.R440Q	PNPLA1_uc003olw.1_Missense_Mutation_p.R345Q|PNPLA1_uc010jwe.1_Missense_Mutation_p.R354Q	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	440	Pro-rich.				lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						ACACTGCCCCGAAGTTCTCTT	0.572											OREG0017382	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	45	124					0	0	0.003610	0	0
DNAH8	1769	broad.mit.edu	37	6	38793989	38793989	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:38793989G>A	uc003ooe.1	+	27	3854	c.3254G>A	c.(3253-3255)CGA>CAA	p.R1085Q		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8									p.R1085Q(2)		skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTACTCTGTCGATATCTGAAT	0.328													26	41					0	0	0.006320	0	0
DNAH8	1769	broad.mit.edu	37	6	38891881	38891881	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:38891881G>A	uc003ooe.1	+	71	10854	c.10254G>A	c.(10252-10254)CGG>CGA	p.R3418R	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TGAGAGCACGGAAAATTCCTT	0.373													28	55					0	0	0.006320	0	0
DNAH8	1769	broad.mit.edu	37	6	38919147	38919147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:38919147C>T	uc003ooe.1	+	80	12251	c.11651C>T	c.(11650-11652)TCT>TTT	p.S3884F	DNAH8_uc003oog.1_Missense_Mutation_p.S333F|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATTGCAGATTCTTTGGAGGAG	0.398													110	132					0	0	0.003610	0	0
DNAH8	1769	broad.mit.edu	37	6	38919199	38919200	+	Nonsense_Mutation	DNP	GG	AA	AA	rs140519170		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:38919199_38919200GG>AA	uc003ooe.1	+	80	12303_12304	c.11703_11704GG>AA	c.(11701-11706)TGGGAA>TGAAAA	p.3901_3902WE>*K	DNAH8_uc003oog.1_Nonsense_Mutation_p.350_351WE>*K|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AGAAAACTTGGGAAGAAAGTGA	0.436													145	180					0	0	0.004672	0	0
DAAM2	23500	broad.mit.edu	37	6	39832259	39832259	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:39832259C>T	uc003oow.2	+	4	465	c.309C>T	c.(307-309)ATC>ATT	p.I103I	DAAM2_uc010jxc.2_Silent_p.I103I|DAAM2_uc003oox.2_Silent_p.I103I	NM_015345	NP_056160	Q86T65	DAAM2_HUMAN	dishevelled associated activator of	103	GBD/FH3.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)|skin(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					ACTATTACATCGACCGCATCA	0.607													6	22					0	0	0.004482	0	0
LRFN2	57497	broad.mit.edu	37	6	40400562	40400562	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:40400562C>T	uc003oph.1	-	2	756	c.291G>A	c.(289-291)CTG>CTA	p.L97L		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	97	LRR 2.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					TCTCGAGGTCCAGAAAGGAAA	0.607													23	52					0	0	0.003330	0	0
TREML4	285852	broad.mit.edu	37	6	41196694	41196694	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:41196694T>G	uc003oqc.2	+	2	410	c.306T>G	c.(304-306)AAT>AAG	p.N102K	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	102	Ig-like V-type.					extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					TGACACAGAATGACTCGGGAT	0.473													33	77					0	0	0.002445	0	0
FRS3	10817	broad.mit.edu	37	6	41744686	41744686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:41744686G>A	uc003orc.1	-	3	284	c.40C>T	c.(40-42)CCA>TCA	p.P14S		NM_006653	NP_006644	O43559	FRS3_HUMAN	fibroblast growth factor receptor substrate 3	14	IRS-type PTB.				fibroblast growth factor receptor signaling pathway	plasma membrane	fibroblast growth factor receptor binding|insulin receptor binding			ovary(2)	2	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;8.38e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			TGGTTGTCTGGAACGCTGTCT	0.547													30	103					0	0	0.004289	0	0
USP49	25862	broad.mit.edu	37	6	41774178	41774178	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:41774178T>C	uc003ori.2	-	4	766	c.544A>G	c.(544-546)AAG>GAG	p.K182E		NM_018561	NP_061031	Q70CQ1	UBP49_HUMAN	ubiquitin thioesterase 49	182					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0919)|Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000309)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GCCTCCTCCTTCTTGCGCTCC	0.721													20	22					0	0	0.008871	0	0
BYSL	705	broad.mit.edu	37	6	41889369	41889369	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:41889369C>T	uc003orl.2	+	1	405	c.69C>T	c.(67-69)ATC>ATT	p.I23I	MED20_uc003orj.2_5'Flank|MED20_uc003ork.2_5'Flank|MED20_uc011duh.1_5'Flank|MED20_uc011dui.1_5'Flank|MED20_uc011duj.1_5'Flank	NM_004053	NP_004044	Q13895	BYST_HUMAN	bystin	23					cell adhesion|female pregnancy|ribosome biogenesis	cytoplasm|nucleolus					0	Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000473)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CCGATCAGATCCTGGCTGGGA	0.652											OREG0017436	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	36	25					0	0	0.004878	0	0
TRERF1	55809	broad.mit.edu	37	6	42224802	42224802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:42224802G>A	uc003osd.2	-	11	2938	c.2375C>T	c.(2374-2376)CCT>CTT	p.P792L	TRERF1_uc011duq.1_Missense_Mutation_p.P709L|TRERF1_uc003osb.2_Missense_Mutation_p.P548L|TRERF1_uc003osc.2_Missense_Mutation_p.P548L|TRERF1_uc003ose.2_Missense_Mutation_p.P812L	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	792	ELM2.|Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			TTGGAGTTCAGGGATTTCTGC	0.478													70	70					0	0	0.003610	0	0
KIAA0240	23506	broad.mit.edu	37	6	42833145	42833145	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:42833145C>T	uc003osn.1	+	13	3352	c.3201C>T	c.(3199-3201)TCC>TCT	p.S1067S	KIAA0240_uc011duw.1_Silent_p.S1067S|KIAA0240_uc003osp.1_Silent_p.S1067S	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	1067										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			AAACTGACTCCATTTTAGAAG	0.512													37	133					0	0	0.002852	0	0
PEX6	5190	broad.mit.edu	37	6	42942632	42942632	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:42942632G>C	uc003otf.2	-	2	1120	c.1027C>G	c.(1027-1029)CGG>GGG	p.R343G	PEX6_uc010jya.2_RNA	NM_000287	NP_000278	Q13608	PEX6_HUMAN	peroxisomal biogenesis factor 6	343					protein import into peroxisome matrix, translocation|protein stabilization	cytosol|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)	1			all cancers(41;0.00235)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0562)			TGAAAGTGCCGGTAAAGAACA	0.463													37	120					0	0	0.002222	0	0
GTPBP2	54676	broad.mit.edu	37	6	43589866	43589866	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:43589866G>A	uc003ovs.2	-	11	1543	c.1506C>T	c.(1504-1506)ATC>ATT	p.I502I	GTPBP2_uc010jyv.2_Silent_p.I414I|GTPBP2_uc003ovt.1_Silent_p.I502I	NM_019096	NP_061969	Q9BX10	GTPB2_HUMAN	GTP binding protein 2	502							GTP binding|GTPase activity			liver(1)|skin(1)	2	all_cancers(18;9.36e-06)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000501)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			ACACCGAGCAGATGGTAGGAT	0.577													20	64					0	0	0.008871	0	0
TCTE1	202500	broad.mit.edu	37	6	44255358	44255358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:44255358G>A	uc003oxi.2	-	2	361	c.205C>T	c.(205-207)CCT>TCT	p.P69S	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	69										ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GACCACTCAGGATCCTCAGCA	0.552													20	84					0	0	0.001523	0	0
ENPP4	22875	broad.mit.edu	37	6	46107699	46107699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:46107699G>A	uc003oxy.2	+	2	638	c.379G>A	c.(379-381)GAA>AAA	p.E127K		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	127	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						TCAGCTTCAGGAAAACAGATC	0.418													43	81					0	0	0.008740	0	0
TDRD6	221400	broad.mit.edu	37	6	46657732	46657732	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:46657732A>T	uc003oyj.2	+	1	1867	c.1867A>T	c.(1867-1869)ACT>TCT	p.T623S	TDRD6_uc010jze.2_Missense_Mutation_p.T617S	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	623					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			TTTTAAAAAGACTGTGCTCCA	0.398													9	14					0	0	0.004482	0	0
MEP1A	4224	broad.mit.edu	37	6	46803191	46803191	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:46803191C>T	uc010jzh.1	+	13	2031	c.1989C>T	c.(1987-1989)GAC>GAT	p.D663D	MEP1A_uc011dwg.1_Silent_p.D385D|MEP1A_uc011dwh.1_Silent_p.D691D|MEP1A_uc011dwi.1_Silent_p.D563D	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	663	Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			CCCTGGAGGACCATAACTGGC	0.597													7	16					0	0	0.003080	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47202494	47202494	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:47202494G>A	uc003oyv.2	-	5	2083	c.1650C>T	c.(1648-1650)TTC>TTT	p.F550F		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	550	Cytoplasmic (Potential).				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			ACTCATCCACGAAGAAGCCCT	0.483													4	14					0	0	0.000602	0	0
PGK2	5232	broad.mit.edu	37	6	49753680	49753680	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:49753680G>A	uc003ozu.2	-	1	1328	c.1221C>T	c.(1219-1221)ATC>ATT	p.I407I		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	407					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					CTCCAGGAAGGATTTTACCTT	0.458													35	67					0	0	0.003271	0	0
PGK2	5232	broad.mit.edu	37	6	49754498	49754498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:49754498G>A	uc003ozu.2	-	1	510	c.403C>T	c.(403-405)CCC>TCC	p.P135S		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	135					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					TTTCCAGAGGGATCTTGGCCC	0.507													36	69					0	0	0.004289	0	0
TFAP2B	7021	broad.mit.edu	37	6	50805686	50805686	+	Splice_Site	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:50805686A>C	uc003pag.2	+	5	988	c.822_splice	c.e5-2	p.R274_splice		NM_003221	NP_003212	Q92481	AP2B_HUMAN	transcription factor AP-2 beta						nervous system development|positive regulation of transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0	Lung NSC(77;0.156)					TTGCAATTTCAGAGCCAAATC	0.413													52	89					0	0	0.003610	0	0
PKHD1	5314	broad.mit.edu	37	6	51890878	51890878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:51890878C>T	uc003pah.1	-	32	4006	c.3730G>A	c.(3730-3732)GAG>AAG	p.E1244K	PKHD1_uc003pai.2_Missense_Mutation_p.E1244K	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1244	Extracellular (Potential).|IPT/TIG 7.				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					ATGCTCGCCTCCGTTAAGTTC	0.587													22	48					0	0	0.003954	0	0
PKHD1	5314	broad.mit.edu	37	6	51918899	51918899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:51918899C>T	uc003pah.1	-	20	2177	c.1901G>A	c.(1900-1902)GGC>GAC	p.G634D	PKHD1_uc003pai.2_Missense_Mutation_p.G634D	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	634	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GTTTTGAAAGCCGATTGTGAA	0.473													22	35					0	0	0.002780	0	0
C6orf142	90523	broad.mit.edu	37	6	54095605	54095605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:54095605C>T	uc003pcg.3	+	11	1320	c.1207C>T	c.(1207-1209)CTC>TTC	p.L403F	C6orf142_uc003pch.3_Intron|C6orf142_uc011dxa.1_Missense_Mutation_p.L938F	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	403						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					TCCACAGACCCTCTCACATGC	0.517													86	168					0	0	0.003610	0	0
FAM83B	222584	broad.mit.edu	37	6	54805432	54805432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:54805432G>A	uc003pck.2	+	5	1779	c.1663G>A	c.(1663-1665)GAA>AAA	p.E555K		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	555										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TGAGCAAAAGGAAGTTAACAG	0.428													14	32					0	0	0.003163	0	0
HCRTR2	3062	broad.mit.edu	37	6	55128600	55128600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:55128600C>T	uc003pcl.2	+	4	1057	c.742C>T	c.(742-744)CGC>TGC	p.R248C	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzw.1_Missense_Mutation_p.R183C	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	248	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GCAAATATTTCGCAAACTCTG	0.373													10	20					0	0	0.000978	0	0
COL21A1	81578	broad.mit.edu	37	6	55922538	55922538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:55922538C>T	uc003pcs.2	-	30	3023	c.2791G>A	c.(2791-2793)GGC>AGC	p.G931S	COL21A1_uc010jzz.2_Missense_Mutation_p.G316S|COL21A1_uc011dxg.1_Missense_Mutation_p.G304S|COL21A1_uc011dxh.1_Missense_Mutation_p.G282S|COL21A1_uc003pcr.2_Missense_Mutation_p.G288S	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	931					cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CCTGGGGGGCCTGGTTGCCCT	0.512													13	18					0	0	0.001855	0	0
LGSN	51557	broad.mit.edu	37	6	63990434	63990434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:63990434C>T	uc003peh.2	-	4	1056	c.1022G>A	c.(1021-1023)GGG>GAG	p.G341E	LGSN_uc003pei.2_Missense_Mutation_p.G201R	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	341					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	CCATTTTTTCCCAGTGATCGT	0.483													22	75					0	0	0.001882	0	0
COL19A1	1310	broad.mit.edu	37	6	70778345	70778345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:70778345C>T	uc003pfc.1	+	15	1318	c.1201C>T	c.(1201-1203)CCA>TCA	p.P401S	COL19A1_uc010kam.1_Missense_Mutation_p.P297S	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	401	Triple-helical region 2 (COL2).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CCCCCAAGGTCCACCTGGAAA	0.438													19	41					0	0	0.002780	0	0
COL19A1	1310	broad.mit.edu	37	6	70916851	70916851	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:70916851C>T	uc003pfc.1	+	51	3419	c.3302C>T	c.(3301-3303)GCT>GTT	p.A1101V		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	1101	Triple-helical region 6 (COL6).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						ATGTCGTTAGCTCTGGGTTTG	0.512													55	146					0	0	0.003610	0	0
OGFRL1	79627	broad.mit.edu	37	6	72003052	72003052	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:72003052G>A	uc003pfx.1	+	2	454	c.291G>A	c.(289-291)AGG>AGA	p.R97R		NM_024576	NP_078852	Q5TC84	OGRL1_HUMAN	opioid growth factor receptor-like 1	97						membrane	receptor activity				0						ATGCTGCCAGGGATTTGTACA	0.378													24	60					0	0	0.003954	0	0
IMPG1	3617	broad.mit.edu	37	6	76657158	76657158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:76657158C>T	uc003pik.1	-	14	2047	c.1917G>A	c.(1915-1917)ATG>ATA	p.M639I		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	639	SEA 2.				visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TAGCAAACTTCATTTTGCTAT	0.433													11	32					0	0	0.008291	0	0
ZNF292	23036	broad.mit.edu	37	6	87970318	87970318	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:87970318G>T	uc003plm.3	+	8	7012	c.6971G>T	c.(6970-6972)GGA>GTA	p.G2324V		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	2324					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		AGCAGATGTGGAAAGGAAGGA	0.373													14	27					3.27435e-08	3.66736e-08	0.002450	1	0
MDN1	23195	broad.mit.edu	37	6	90468564	90468564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:90468564G>A	uc003pnn.1	-	18	2692	c.2576C>T	c.(2575-2577)TCC>TTC	p.S859F	MDN1_uc003pno.1_Missense_Mutation_p.S277F	NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	859					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CAACACCAGGGATCCAGAAGA	0.458													23	38					0	0	0.003330	0	0
EPHA7	2045	broad.mit.edu	37	6	93956522	93956522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:93956522C>T	uc003poe.2	-	15	2955	c.2714G>A	c.(2713-2715)GGA>GAA	p.G905E	EPHA7_uc003pof.2_Missense_Mutation_p.G900E|EPHA7_uc011eac.1_Missense_Mutation_p.G901E	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	905	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		ACTACAAGTTCCCAGGGGAGT	0.403													23	62					0	0	0.006320	0	0
EPHA7	2045	broad.mit.edu	37	6	93965744	93965744	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:93965744C>T	uc003poe.2	-	13	2425	c.2184G>A	c.(2182-2184)GGG>GGA	p.G728G	EPHA7_uc003pof.2_Silent_p.G723G|EPHA7_uc011eac.1_Silent_p.G724G	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	728	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CTGTAAATTGCCCATCATGTT	0.398													10	47					0	0	0.001368	0	0
EPHA7	2045	broad.mit.edu	37	6	93967959	93967960	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:93967959_93967960CC>TT	uc003poe.2	-	11	2208_2209	c.1967_1968GG>AA	c.(1966-1968)GGG>GAA	p.G656E	EPHA7_uc003pof.2_Missense_Mutation_p.G651E|EPHA7_uc011eac.1_Missense_Mutation_p.G652E	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	656	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity	p.G656W(1)		lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CATCTCTTTTCCCTGGAAGTTT	0.386													43	127					0	0	0.004672	0	0
EPHA7	2045	broad.mit.edu	37	6	94124437	94124437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:94124437G>A	uc003poe.2	-	2	387	c.146C>T	c.(145-147)TCC>TTC	p.S49F	EPHA7_uc003pof.2_Missense_Mutation_p.S49F|EPHA7_uc011eac.1_Missense_Mutation_p.S49F|EPHA7_uc003pog.3_Missense_Mutation_p.S49F	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	49	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		GGGTGGAGAGGAAATCCACTC	0.353													23	50					0	0	0.004656	0	0
BVES	11149	broad.mit.edu	37	6	105577305	105577305	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:105577305G>A	uc003pqw.2	-	3	457	c.300C>T	c.(298-300)TTC>TTT	p.F100F	BVES_uc003pqx.2_Silent_p.F100F|BVES_uc003pqy.2_Silent_p.F100F	NM_147147	NP_671488	Q8NE79	POPD1_HUMAN	blood vessel epicardial substance isoform 5	100	Helical; (Potential).				epithelial cell-cell adhesion|muscle organ development|positive regulation of locomotion|positive regulation of receptor recycling|regulation of Cdc42 GTPase activity|regulation of cell shape|regulation of Rac GTPase activity|substrate adhesion-dependent cell spreading|vesicle-mediated transport	integral to membrane|lateral plasma membrane|tight junction	structural molecule activity				0		all_cancers(87;2.83e-05)|Acute lymphoblastic leukemia(125;1.95e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0101)|Colorectal(196;0.204)|Lung NSC(302;0.238)				TGACACCCAAGAACACAGAGT	0.358													46	74					0	0	0.003214	0	0
LAMA4	3910	broad.mit.edu	37	6	112537645	112537645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:112537645G>A	uc003pvu.2	-	3	530	c.221C>T	c.(220-222)ACC>ATC	p.T74I	LAMA4_uc003pvv.2_Missense_Mutation_p.T74I|LAMA4_uc003pvt.2_Missense_Mutation_p.T74I|LAMA4_uc003pvw.2_Missense_Mutation_p.T74I	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	74					cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		TCCCGACAGGGTGTGAAAGAA	0.428													11	34					0	0	0.001368	0	0
COL10A1	1300	broad.mit.edu	37	6	116441754	116441754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:116441754G>A	uc003pwm.2	-	3	1621	c.1525C>T	c.(1525-1527)CCC>TCC	p.P509S	NT5DC1_uc003pwj.2_Intron|NT5DC1_uc003pwk.2_Intron|NT5DC1_uc003pwl.2_Intron	NM_000493	NP_000484	Q03692	COAA1_HUMAN	type X collagen alpha 1 precursor	509	Triple-helical region.				skeletal system development	collagen	metal ion binding			central_nervous_system(1)	1		all_cancers(87;0.0176)|all_epithelial(87;0.0263)|Colorectal(196;0.234)		all cancers(137;0.0157)|OV - Ovarian serous cystadenocarcinoma(136;0.0325)|GBM - Glioblastoma multiforme(226;0.0446)|Epithelial(106;0.0711)		GGCCCAGGGGGCCCTGGAAGA	0.622													13	30					0	0	0.003163	0	0
GPRC6A	222545	broad.mit.edu	37	6	117116940	117116940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:117116940C>T	uc003pxj.1	-	5	1629	c.1607G>A	c.(1606-1608)AGA>AAA	p.R536K	GPRC6A_uc003pxk.1_Missense_Mutation_p.R361K|GPRC6A_uc003pxl.1_Missense_Mutation_p.R465K	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	536	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		GTGTTGACTTCTTGTAGTTTT	0.338													16	36					0	0	0.004007	0	0
GPRC6A	222545	broad.mit.edu	37	6	117150141	117150141	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:117150141C>T	uc003pxj.1	-	1	58	c.36G>A	c.(34-36)GTG>GTA	p.V12V	GPRC6A_uc003pxk.1_Silent_p.V12V|GPRC6A_uc003pxl.1_Silent_p.V12V	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	12					response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		CAAGAATAATCACAAAGCAGG	0.418													9	29					0	0	0.004482	0	0
ROS1	6098	broad.mit.edu	37	6	117632270	117632270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:117632270G>A	uc003pxp.1	-	39	6345	c.6146C>T	c.(6145-6147)CCT>CTT	p.P2049L	ROS1_uc011ebi.1_RNA	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	2049	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GGTGAGTAAAGGACCATAAAA	0.289			T	GOPC|ROS1	glioblastoma|NSCLC								29	57					0	0	0.005443	0	0
ROS1	6098	broad.mit.edu	37	6	117678977	117678977	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:117678977G>A	uc003pxp.1	-	24	4043	c.3844C>T	c.(3844-3846)CCT>TCT	p.P1282S	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1282	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CTTAAAAGAGGATATACAGAA	0.274			T	GOPC|ROS1	glioblastoma|NSCLC								11	19					0	0	0.000978	0	0
DCBLD1	285761	broad.mit.edu	37	6	117853555	117853555	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:117853555G>A	uc003pxs.2	+	6	843	c.718G>A	c.(718-720)GAT>AAT	p.D240N	GOPC_uc003pxq.1_Intron|DCBLD1_uc003pxr.1_Missense_Mutation_p.D240N	NM_173674	NP_775945	Q8N8Z6	DCBD1_HUMAN	discoidin, CUB and LCCL domain containing 1	240	LCCL.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(1)	1		all_cancers(87;0.171)		GBM - Glioblastoma multiforme(226;0.0447)|OV - Ovarian serous cystadenocarcinoma(136;0.0921)|all cancers(137;0.125)		TCTTTCGAGGGAGTAAGTATT	0.423													9	14					0	0	0.006214	0	0
MAN1A1	4121	broad.mit.edu	37	6	119510860	119510860	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:119510860G>A	uc003pym.1	-	10	1957	c.1515C>T	c.(1513-1515)GCC>GCT	p.A505A		NM_005907	NP_005898	P33908	MA1A1_HUMAN	mannosidase, alpha, class 1A, member 1	505	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_epithelial(87;0.173)		OV - Ovarian serous cystadenocarcinoma(136;0.0612)|GBM - Glioblastoma multiforme(226;0.0702)|all cancers(137;0.115)		GACAAGTACGGGCAATTTCAG	0.483													46	86					0	0	0.003610	0	0
C6orf170	221322	broad.mit.edu	37	6	121412005	121412005	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:121412005G>A	uc003pyo.1	-	31	3716	c.3648C>T	c.(3646-3648)TTC>TTT	p.F1216F		NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	1216	Rab-GAP TBC.				multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		TTACTTTTAGGAAAACTTGCA	0.313													30	84					0	0	0.002096	0	0
CLVS2	134829	broad.mit.edu	37	6	123376999	123376999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:123376999C>T	uc003pzi.1	+	5	1593	c.724C>T	c.(724-726)CCT>TCT	p.P242S		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	242	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						ACTAATTCATCCTGAGATCCT	0.443													25	67					0	0	0.008361	0	0
HEY2	23493	broad.mit.edu	37	6	126080793	126080793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:126080793C>T	uc003qad.2	+	5	1050	c.859C>T	c.(859-861)CCC>TCC	p.P287S	HEY2_uc011ebr.1_Missense_Mutation_p.P241S	NM_012259	NP_036391	Q9UBP5	HEY2_HUMAN	hairy/enhancer-of-split related with YRPW motif	287	Ala-rich.				negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription initiation from RNA polymerase II promoter|negative regulation of transcription regulatory region DNA binding|Notch signaling pathway|smooth muscle cell differentiation|transcription, DNA-dependent	transcriptional repressor complex	histone deacetylase binding|RNA polymerase II activating transcription factor binding|sequence-specific DNA binding			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0608)|GBM - Glioblastoma multiforme(226;0.0361)|all cancers(137;0.193)		GGGGGCATTCCCCATGCTTCC	0.667													55	130					0	0	0.003610	0	0
THEMIS	387357	broad.mit.edu	37	6	128151021	128151021	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:128151021C>T	uc003qbi.2	-	4	628	c.309G>A	c.(307-309)AGG>AGA	p.R103R	THEMIS_uc010kfa.2_Silent_p.R6R|THEMIS_uc011ebt.1_Silent_p.R103R|THEMIS_uc010kfb.2_Silent_p.R68R	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	103	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TATGAATGGTCCTTGTGATTT	0.363													25	61					0	0	0.007291	0	0
LAMA2	3908	broad.mit.edu	37	6	129674493	129674493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:129674493G>A	uc003qbn.2	+	32	4813	c.4708G>A	c.(4708-4710)GAG>AAG	p.E1570K	LAMA2_uc003qbo.2_Missense_Mutation_p.E1570K	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1570	Laminin EGF-like 17.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CGAGGGCTGGGAGTGTGTTTG	0.552													39	50					0	0	0.008740	0	0
EPB41L2	2037	broad.mit.edu	37	6	131225613	131225613	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:131225613A>T	uc003qch.2	-	6	1103	c.921T>A	c.(919-921)GAT>GAA	p.D307E	EPB41L2_uc003qcg.1_Missense_Mutation_p.D307E|EPB41L2_uc011eby.1_Missense_Mutation_p.D307E|EPB41L2_uc003qci.2_Missense_Mutation_p.D307E|EPB41L2_uc010kfk.2_Missense_Mutation_p.D307E|EPB41L2_uc010kfl.1_Missense_Mutation_p.D307E	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	307	FERM.				cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		ACCTGGTGATATCTTCAGTCA	0.353													32	61					0	0	0.002836	0	0
CTAGE9	643854	broad.mit.edu	37	6	132031781	132031781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:132031781C>T	uc011ece.1	-	1	377	c.377G>A	c.(376-378)CGA>CAA	p.R126Q	ENPP3_uc003qcu.3_Intron|ENPP3_uc010kfq.2_Intron|ENPP3_uc003qcv.2_Intron	NM_001145659	NP_001139131	A4FU28	CTGE9_HUMAN	CTAGE family, member 4-like	126	Potential.					integral to membrane					0						CTCCAAACTTCGTGCTTCTTC	0.403													50	121					0	0	0.003610	0	0
TAAR8	83551	broad.mit.edu	37	6	132873887	132873887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:132873887G>A	uc011ecj.1	+	1	56	c.56G>A	c.(55-57)GGA>GAA	p.G19E		NM_053278	NP_444508	Q969N4	TAAR8_HUMAN	trace amine associated receptor 8	19	Extracellular (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00412)|GBM - Glioblastoma multiforme(226;0.00792)		GATGTGAATGGATCTTGTATT	0.433													23	77					0	0	0.002299	0	0
TAAR5	9038	broad.mit.edu	37	6	132910798	132910798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:132910798C>T	uc003qdk.2	-	1	80	c.28G>A	c.(28-30)GAA>AAA	p.E10K		NM_003967	NP_003958	O14804	TAAR5_HUMAN	trace amine associated receptor 5	10	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			skin(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00604)|GBM - Glioblastoma multiforme(226;0.015)		GGGTGCTCTTCAGCACCTTGG	0.493													17	47					0	0	0.008871	0	0
TAAR2	9287	broad.mit.edu	37	6	132939139	132939139	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:132939139G>A	uc003qdl.1	-	2	206	c.206C>T	c.(205-207)TCC>TTC	p.S69F	TAAR2_uc010kfr.1_Missense_Mutation_p.S24F	NM_001033080	NP_001028252	Q9P1P5	TAAR2_HUMAN	trace amine associated receptor 2 isoform 1	69	Helical; Name=1; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00608)|GBM - Glioblastoma multiforme(226;0.0151)		CTTGAAGTAGGAAATGGAAAT	0.423													21	40					0	0	0.001882	0	0
EYA4	2070	broad.mit.edu	37	6	133802735	133802735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:133802735G>A	uc003qec.3	+	12	1563	c.1105G>A	c.(1105-1107)GAG>AAG	p.E369K	EYA4_uc011ecq.1_Missense_Mutation_p.E315K|EYA4_uc011ecr.1_Missense_Mutation_p.E321K|EYA4_uc003qed.3_Missense_Mutation_p.E369K|EYA4_uc003qee.3_Missense_Mutation_p.E346K|EYA4_uc011ecs.1_Missense_Mutation_p.E375K|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	369					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		TAGTGACCTGGAGGTATGCCT	0.398													28	46					0	0	0.007291	0	0
MYB	4602	broad.mit.edu	37	6	135521527	135521527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:135521527C>T	uc003qfc.2	+	12	1760	c.1561C>T	c.(1561-1563)CCC>TCC	p.P521S	MYB_uc003qfh.2_Missense_Mutation_p.P642S|MYB_uc003qfi.2_Missense_Mutation_p.P626S|MYB_uc010kgi.2_Missense_Mutation_p.P521S|MYB_uc003qfq.2_Missense_Mutation_p.P639S|MYB_uc010kgj.2_Missense_Mutation_p.P486S|MYB_uc003qfo.2_Missense_Mutation_p.P436S|MYB_uc003qfu.2_Missense_Mutation_p.P518S|MYB_uc003qfl.2_RNA|MYB_uc003qfv.2_RNA|MYB_uc003qfz.2_RNA|MYB_uc003qfx.2_RNA|MYB_uc003qga.2_RNA|MYB_uc003qgb.2_RNA|MYB_uc010kgk.2_RNA|MYB_uc003qfd.2_RNA|MYB_uc003qfe.2_RNA|MYB_uc003qfg.2_RNA|MYB_uc003qff.2_RNA|MYB_uc003qfj.2_RNA|MYB_uc003qfm.2_RNA|MYB_uc003qfp.2_RNA|MYB_uc003qfn.2_RNA|MYB_uc003qfk.2_RNA|MYB_uc003qfr.2_RNA|MYB_uc003qfs.2_Missense_Mutation_p.P147S|MYB_uc003qft.2_RNA|MYB_uc003qfw.2_Missense_Mutation_p.P333S|MYB_uc003qfy.2_RNA|MYB_uc003qgc.2_RNA|MYB_uc003qfb.1_Missense_Mutation_p.P521S	NM_005375	NP_005366	P10242	MYB_HUMAN	v-myb myeloblastosis viral oncogene homolog	521					blood coagulation|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone H3-K4 methylation|positive regulation of histone H3-K9 methylation|positive regulation of T-helper cell differentiation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear matrix	DNA binding|protein binding			lung(1)	1	all_epithelial(2;0.109)|Breast(56;0.158)|Colorectal(23;0.221)	Lung NSC(302;3.08e-05)|Ovarian(999;0.208)		OV - Ovarian serous cystadenocarcinoma(155;0.0079)|GBM - Glioblastoma multiforme(68;0.0117)		AAATGGACCACCCTTACTGAA	0.443			T	NFIB	adenoid cystic carcinoma								7	22					0	0	0.003080	0	0
BCLAF1	9774	broad.mit.edu	37	6	136590624	136590624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:136590624C>T	uc003qgx.1	-	9	2423	c.2170G>A	c.(2170-2172)GAA>AAA	p.E724K	BCLAF1_uc011edb.1_5'Flank|BCLAF1_uc003qgw.1_Missense_Mutation_p.E551K|BCLAF1_uc003qgy.1_Missense_Mutation_p.E722K|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.E722K	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	724					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GGAGTTTTTTCCTGCTTTCTT	0.393													4	74					0	0	0.001984	0	0
SYNE1	23345	broad.mit.edu	37	6	152456295	152456295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:152456295G>A	uc010kiw.2	-	142	26334	c.25732C>T	c.(25732-25734)CCT>TCT	p.P8578S	SYNE1_uc010kiv.2_Missense_Mutation_p.P3102S|SYNE1_uc003qos.3_Missense_Mutation_p.P3102S|SYNE1_uc003qot.3_Missense_Mutation_p.P8530S|SYNE1_uc003qou.3_Missense_Mutation_p.P8578S|SYNE1_uc003qop.3_Missense_Mutation_p.P763S|SYNE1_uc011eez.1_Missense_Mutation_p.P780S|SYNE1_uc003qoq.3_Missense_Mutation_p.P780S|SYNE1_uc003qor.3_Missense_Mutation_p.P1501S	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	8578	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GAATCAATAGGGACAATTTCA	0.393										HNSCC(10;0.0054)			27	30					0	0	0.004656	0	0
SYNE1	23345	broad.mit.edu	37	6	152639236	152639236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:152639236G>A	uc010kiw.2	-	86	17154	c.16552C>T	c.(16552-16554)CGG>TGG	p.R5518W	SYNE1_uc010kiv.2_Missense_Mutation_p.R42W|SYNE1_uc003qos.3_Missense_Mutation_p.R42W|SYNE1_uc003qot.3_Missense_Mutation_p.R5447W|SYNE1_uc003qou.3_Missense_Mutation_p.R5518W|SYNE1_uc010kiz.2_Missense_Mutation_p.R1273W	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5518	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTGGAGAGCCGATTCTCAGCT	0.433										HNSCC(10;0.0054)			49	113					0	0	0.003610	0	0
SYNE1	23345	broad.mit.edu	37	6	152712529	152712529	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:152712529C>T	uc010kiw.2	-	52	8489	c.7887G>A	c.(7885-7887)CTG>CTA	p.L2629L	SYNE1_uc003qot.3_Silent_p.L2636L|SYNE1_uc003qou.3_Silent_p.L2629L|SYNE1_uc010kjb.1_Silent_p.L2612L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2629	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GTGCTTCCTCCAGGGCTTCGT	0.562										HNSCC(10;0.0054)			21	32					0	0	0.001523	0	0
SYNE1	23345	broad.mit.edu	37	6	152784511	152784511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:152784511C>T	uc010kiw.2	-	19	2676	c.2074G>A	c.(2074-2076)GAG>AAG	p.E692K	SYNE1_uc003qot.3_Missense_Mutation_p.E699K|SYNE1_uc003qou.3_Missense_Mutation_p.E692K|SYNE1_uc010kjb.1_Missense_Mutation_p.E675K|SYNE1_uc003qpa.1_Missense_Mutation_p.E692K|SYNE1_uc003qow.2_5'Flank|SYNE1_uc003qox.1_Missense_Mutation_p.E208K|SYNE1_uc003qoz.2_Missense_Mutation_p.E124K|SYNE1_uc003qoy.2_Missense_Mutation_p.E259K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	692	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATAAACAACTCCCTCCACCGC	0.413										HNSCC(10;0.0054)			27	104					0	0	0.006320	0	0
TIAM2	26230	broad.mit.edu	37	6	155450986	155450986	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:155450986C>T	uc003qqb.2	+	6	1902	c.629C>T	c.(628-630)CCT>CTT	p.P210L	TIAM2_uc003qqe.2_Missense_Mutation_p.P210L	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	210					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		GAAACCTCCCCTGTGCCTGAA	0.637													9	39					0	0	0.008291	0	0
SYNJ2	8871	broad.mit.edu	37	6	158509751	158509751	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:158509751C>G	uc003qqx.1	+	24	3478	c.3403C>G	c.(3403-3405)CAG>GAG	p.Q1135E	SYNJ2_uc003qqw.1_Missense_Mutation_p.Q1135E|SYNJ2_uc003qqy.1_Missense_Mutation_p.Q848E|SYNJ2_uc003qqz.1_Missense_Mutation_p.Q752E|SYNJ2_uc003qra.1_Missense_Mutation_p.Q478E|SYNJ2_uc010kjp.1_Missense_Mutation_p.Q18E	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	1135	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		CACCCATGGACAGTATTCAAT	0.502													47	91					0	0	0.003610	0	0
FNDC1	84624	broad.mit.edu	37	6	159670212	159670212	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:159670212T>C	uc010kjv.2	+	16	5032	c.4832T>C	c.(4831-4833)GTT>GCT	p.V1611A		NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1611						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		AAACGATTTGTTGGTAAATAT	0.438													7	14					0	0	0.003080	0	0
IGF2R	3482	broad.mit.edu	37	6	160494795	160494795	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:160494795T>G	uc003qta.2	+	35	5102	c.4954T>G	c.(4954-4956)TGT>GGT	p.C1652G		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	1652	11.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		ACAGACCGAATGTTCCGTGAG	0.403													12	35					0	0	0.002450	0	0
PLG	5340	broad.mit.edu	37	6	161137681	161137681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:161137681C>T	uc003qtm.3	+	7	736	c.673C>T	c.(673-675)CCA>TCA	p.P225S		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	225	Kringle 2.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	ATTCAGATTTCCAAACAAGAA	0.363													11	22					0	0	0.001368	0	0
QKI	9444	broad.mit.edu	37	6	163987773	163987773	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:163987773C>T	uc003qui.2	+	7	1506	c.955C>T	c.(955-957)CGA>TGA	p.R319*	QKI_uc003que.2_3'UTR|QKI_uc003quf.2_3'UTR|QKI_uc003qug.2_3'UTR|QKI_uc003quh.2_3'UTR|QKI_uc003quj.2_Nonsense_Mutation_p.R311*	NM_006775	NP_006766	Q96PU8	QKI_HUMAN	quaking homolog, KH domain RNA binding isoform	319					mRNA processing|mRNA transport|regulation of translation|RNA splicing	cytoplasm|nucleus|plasma membrane	RNA binding|SH3 domain binding			large_intestine(1)|ovary(1)	2		Breast(66;5e-05)|Prostate(117;0.0235)|all_neural(5;0.0416)|Ovarian(120;0.0448)|Glioma(2;0.203)		all cancers(1;4.4e-46)|OV - Ovarian serous cystadenocarcinoma(33;6.91e-23)|GBM - Glioblastoma multiforme(1;2.94e-19)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|Kidney(3;0.000199)|KIRC - Kidney renal clear cell carcinoma(3;0.000234)		TACTAAAGTTCGAAGGCACGA	0.418													9	32					0	0	0.001368	0	0
GPR31	2853	broad.mit.edu	37	6	167571071	167571071	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:167571071G>A	uc011egq.1	-	1	249	c.249C>T	c.(247-249)GGC>GGT	p.G83G		NM_005299	NP_005290	O00270	GPR31_HUMAN	G protein-coupled receptor 31	83	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;4.81e-20)|BRCA - Breast invasive adenocarcinoma(81;4.45e-06)|GBM - Glioblastoma multiforme(31;0.00492)		AGCCCACACGGCCCAGATGCC	0.672													10	15					0	0	0.006214	0	0
GPR31	2853	broad.mit.edu	37	6	167571113	167571113	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:167571113G>A	uc011egq.1	-	1	207	c.207C>T	c.(205-207)TTC>TTT	p.F69F		NM_005299	NP_005290	O00270	GPR31_HUMAN	G protein-coupled receptor 31	69	Helical; Name=2; (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;4.81e-20)|BRCA - Breast invasive adenocarcinoma(81;4.45e-06)|GBM - Glioblastoma multiforme(31;0.00492)		AGGCGGCCAGGAAAGGCAGGC	0.657													9	22					0	0	0.006214	0	0
GNA12	2768	broad.mit.edu	37	7	2771243	2771243	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:2771243G>A	uc003smu.2	-	4	882	c.718C>T	c.(718-720)CAG>TAG	p.Q240*	GNA12_uc011jwb.1_Nonsense_Mutation_p.Q223*|GNA12_uc003smt.2_Nonsense_Mutation_p.Q181*	NM_007353	NP_031379	Q03113	GNA12_HUMAN	guanine nucleotide binding protein (G protein)	240					G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|Rho protein signal transduction	brush border membrane|heterotrimeric G-protein complex	D5 dopamine receptor binding|G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)	1		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;1.02e-13)		TCGAAGCACTGGAACCACTTC	0.577													113	90					0	0	0.003610	0	0
CARD11	84433	broad.mit.edu	37	7	2946451	2946451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:2946451C>T	uc003smv.2	-	25	3690	c.3286G>A	c.(3286-3288)GAG>AAG	p.E1096K		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	1096	Guanylate kinase-like.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		AACTCCTCCTCCGTCTCAGGT	0.677			Mis		DLBCL								30	29					0	0	0.002096	0	0
CARD11	84433	broad.mit.edu	37	7	2963920	2963920	+	Missense_Mutation	SNP	A	C	C	rs150116627		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:2963920A>C	uc003smv.2	-	15	2291	c.1887T>G	c.(1885-1887)GAT>GAG	p.D629E		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	629					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		GGTCGTAGGCATCCAGGCCCT	0.597			Mis		DLBCL								14	75					0	0	0.004007	0	0
SDK1	221935	broad.mit.edu	37	7	4014040	4014040	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:4014040G>A	uc003smx.2	+	13	1996	c.1857G>A	c.(1855-1857)TCG>TCA	p.S619S		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	619	Ig-like C2-type 6.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TGACTCCATCGAGCACGTCTA	0.542													60	35					0	0	0.003610	0	0
DGKB	1607	broad.mit.edu	37	7	14880876	14880876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:14880876C>T	uc003ssz.2	-	1	200	c.13G>A	c.(13-15)GAA>AAA	p.E5K	DGKB_uc011jxt.1_Missense_Mutation_p.E5K|DGKB_uc003sta.2_Missense_Mutation_p.E5K|DGKB_uc011jxu.1_Missense_Mutation_p.E5K|DGKB_uc011jxv.1_Missense_Mutation_p.E5K	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	5					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	GCCCATTTTTCCTGGTTTGTC	0.403													27	25					0	0	0.001786	0	0
TMEM196	256130	broad.mit.edu	37	7	19765245	19765245	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:19765245G>A	uc011jyg.1	-	3	436	c.351C>T	c.(349-351)GGC>GGT	p.G117G	TMEM196_uc003sur.2_RNA	NM_152774	NP_689987	Q5HYL7	TM196_HUMAN	transmembrane protein 196	123	Helical; (Potential).					integral to membrane					0						AGAGAGTGCAGCCCCCGATCC	0.517													22	95					0	0	0.002299	0	0
MACC1	346389	broad.mit.edu	37	7	20197851	20197851	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:20197851C>T	uc003sus.3	-	5	2442	c.2133G>A	c.(2131-2133)AGG>AGA	p.R711R	MACC1_uc010kug.2_Silent_p.R711R	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	711					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						ACAGAAACTTCCTTGTATTTC	0.318													71	54					0	0	0.003610	0	0
CDCA7L	55536	broad.mit.edu	37	7	21946201	21946201	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:21946201G>A	uc010kuk.2	-	5	858	c.738C>T	c.(736-738)ACC>ACT	p.T246T	CDCA7L_uc003sve.3_Silent_p.T212T|CDCA7L_uc010kul.2_Silent_p.T200T|CDCA7L_uc003svf.3_Silent_p.T245T|CDCA7L_uc011jyk.1_Silent_p.T246T	NM_018719	NP_061189	Q96GN5	CDA7L_HUMAN	cell division cycle associated 7-like isoform 1	246					positive regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus					0						CTGAGGTTGGGGTTCGTACTG	0.423													38	168					0	0	0.002222	0	0
NUPL2	11097	broad.mit.edu	37	7	23240047	23240047	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:23240047C>G	uc003svu.2	+	7	1214	c.955C>G	c.(955-957)CTT>GTT	p.L319V	NUPL2_uc003svv.2_RNA|NUPL2_uc003svw.2_Missense_Mutation_p.L196V|NUPL2_uc011jyw.1_RNA|NUPL2_uc003svx.2_Missense_Mutation_p.L196V|NUPL2_uc011jyx.1_Missense_Mutation_p.L91V	NM_007342	NP_031368	O15504	NUPL2_HUMAN	nucleoporin like 2	319	Ser-rich.				carbohydrate metabolic process|glucose transport|mRNA transport|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nuclear pore	nuclear export signal receptor activity|nucleic acid binding|zinc ion binding			skin(2)|ovary(1)	3						ATTTTCAGGACTTCCAGCTTC	0.522													25	87					0	0	0.001786	0	0
IGF2BP3	10643	broad.mit.edu	37	7	23401326	23401326	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:23401326A>C	uc003swg.2	-	4	586	c.320T>G	c.(319-321)GTG>GGG	p.V107G		NM_006547	NP_006538	O00425	IF2B3_HUMAN	insulin-like growth factor 2 mRNA binding	107	RRM 2.				anatomical structure morphogenesis|negative regulation of translation|translation	cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			ovary(2)	2						ACAGCTCTCCACCACTCCATA	0.373													56	49					0	0	0.003610	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31125012	31125012	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:31125012G>A	uc003tca.1	+	9	847	c.624G>A	c.(622-624)TGG>TGA	p.W208*	ADCYAP1R1_uc003tcb.1_Nonsense_Mutation_p.W187*|ADCYAP1R1_uc003tcc.1_Nonsense_Mutation_p.W208*|ADCYAP1R1_uc003tcd.1_Nonsense_Mutation_p.W208*|ADCYAP1R1_uc003tce.1_Nonsense_Mutation_p.W208*|ADCYAP1R1_uc003tcf.1_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	208	Extracellular (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						TCAAAGACTGGATTCTGTATG	0.547													103	83					0	0	0.003610	0	0
TBX20	57057	broad.mit.edu	37	7	35242171	35242171	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:35242171G>A	uc011kas.1	-	8	1226	c.1215C>T	c.(1213-1215)TCC>TCT	p.S405S		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	405						nucleus	DNA binding			central_nervous_system(1)	1						TCCCTTGCATGGAGCTGGCAA	0.552													11	45					0	0	0.008291	0	0
TBX20	57057	broad.mit.edu	37	7	35244178	35244178	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:35244178G>A	uc011kas.1	-	7	918	c.907C>T	c.(907-909)CTG>TTG	p.L303L		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	303						nucleus	DNA binding			central_nervous_system(1)	1						TTTTGAATCAGGCTCTCCACA	0.453													15	52					0	0	0.006122	0	0
AMPH	273	broad.mit.edu	37	7	38433605	38433605	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:38433605C>T	uc003tgu.2	-	18	1677	c.1608G>A	c.(1606-1608)CAG>CAA	p.Q536Q	AMPH_uc003tgv.2_Silent_p.Q494Q|AMPH_uc003tgt.2_Silent_p.Q421Q|AMPH_uc003tgw.1_Silent_p.Q559Q|AMPH_uc010kxl.1_RNA	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	536					endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						GGACACTCACCTGAGGCACTG	0.517													16	110					0	0	0.004007	0	0
VPS41	27072	broad.mit.edu	37	7	38783140	38783141	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:38783140_38783141GG>AA	uc003tgy.2	-	24	2009_2010	c.1983_1984CC>TT	c.(1981-1986)AGCCGA>AGTTGA	p.R662*	VPS41_uc003tgz.2_Nonsense_Mutation_p.R637*|VPS41_uc010kxn.2_Nonsense_Mutation_p.R573*|VPS41_uc003tgx.2_RNA	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	662	Clathrin.				Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						TTACCCATTCGGCCTTGGTGGG	0.366													74	37					0	0	0.004672	0	0
POU6F2	11281	broad.mit.edu	37	7	39125630	39125630	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:39125630C>T	uc003thb.1	+	2	231	c.189C>T	c.(187-189)TTC>TTT	p.F63F	POU6F2_uc010kxo.2_Silent_p.F55F	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	63					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GCAAGCTCTTCGGTAAGTCTG	0.507													13	52					0	0	0.001855	0	0
POU6F2	11281	broad.mit.edu	37	7	39246994	39246994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:39246994C>T	uc003thb.1	+	4	328	c.286C>T	c.(286-288)CTT>TTT	p.L96F	POU6F2_uc010kxo.2_Missense_Mutation_p.L88F	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	96					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CTTGCAGCCACTTCTGACGGC	0.532													32	229					0	0	0.003271	0	0
POU6F2	11281	broad.mit.edu	37	7	39379268	39379268	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:39379268A>C	uc003thb.1	+	5	581	c.539A>C	c.(538-540)CAG>CCG	p.Q180P	POU6F2_uc010kxo.2_Missense_Mutation_p.Q172P	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	180	Gln-rich.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						TCCCAGCTCcagcagctccag	0.428													9	36					0	0	0.008291	0	0
POU6F2	11281	broad.mit.edu	37	7	39379586	39379586	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:39379586C>T	uc003thb.1	+	5	899	c.857C>T	c.(856-858)TCA>TTA	p.S286L	POU6F2_uc010kxo.2_Missense_Mutation_p.S278L	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	286	Pro-rich.|Gln-rich.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GGCCTGCCTTCACCGCTCACG	0.428													63	46					0	0	0.003610	0	0
CDK13	8621	broad.mit.edu	37	7	40041576	40041576	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:40041576A>T	uc003thh.3	+	5	2581	c.2299A>T	c.(2299-2301)ATG>TTG	p.M767L	CDK13_uc003thi.3_Missense_Mutation_p.M767L|CDK13_uc011kbf.1_Missense_Mutation_p.M153L	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	767	Protein kinase.				alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						TATTATCAATATGAAGGAAAT	0.323													19	97					0	0	0.007413	0	0
PKD1L1	168507	broad.mit.edu	37	7	47835655	47835655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:47835655C>T	uc003tny.1	-	55	8287	c.8287G>A	c.(8287-8289)GAA>AAA	p.E2763K	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2763	Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AGGACCTTTTCCCACATATAA	0.398													39	152					0	0	0.006230	0	0
ABCA13	154664	broad.mit.edu	37	7	48349586	48349586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:48349586G>A	uc003toq.2	+	24	9389	c.9364G>A	c.(9364-9366)GAT>AAT	p.D3122N	ABCA13_uc010kys.1_Missense_Mutation_p.D196N	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3122					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TGGAAAGTGTGATCAGGAAAT	0.478													25	154					0	0	0.004656	0	0
ABCA13	154664	broad.mit.edu	37	7	48559685	48559685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:48559685C>T	uc003toq.2	+	53	13871	c.13846C>T	c.(13846-13848)CCT>TCT	p.P4616S	ABCA13_uc010kys.1_Missense_Mutation_p.P1691S|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Missense_Mutation_p.P346S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4616	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TACTATTTTTCCTCAATTCTG	0.368													43	23					0	0	0.002852	0	0
LOC168474	168474	broad.mit.edu	37	7	64313327	64313327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:64313327C>T	uc003ttj.1	-	1	852	c.300G>A	c.(298-300)ATG>ATA	p.M100I		NR_002789				SubName: Full=Selenophosphate synthetase 1; SubName: Full=Selenophosphate synthetase 1, isoform CRA_a;												0						TCACTTTATCCATTTCCCTGT	0.468													17	27					0	0	0.008871	0	0
WBSCR17	64409	broad.mit.edu	37	7	70886084	70886084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:70886084C>T	uc003tvy.2	+	5	955	c.955C>T	c.(955-957)CCC>TCC	p.P319S	WBSCR17_uc003tvz.2_Missense_Mutation_p.P18S	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	319	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				CCCTTCTCTCCCCATCAGGTC	0.612													15	20					0	0	0.004007	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657540	72657540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:72657540C>T	uc003txs.1	-	13	2372	c.1444G>A	c.(1444-1446)GAC>AAC	p.D482N	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						cattgcaggtcgataacctcc	0													65	139					0	0	0.003610	0	0
FGL2	10875	broad.mit.edu	37	7	76826196	76826196	+	Silent	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:76826196A>C	uc003ugb.2	-	2	760	c.720T>G	c.(718-720)GTT>GTG	p.V240V	CCDC146_uc003ufz.1_Intron|CCDC146_uc003uga.2_Intron	NM_006682	NP_006673	Q14314	FGL2_HUMAN	fibrinogen-like 2 precursor	240	Fibrinogen C-terminal.				signal transduction	fibrinogen complex	receptor binding			skin(2)	2						TGTCACAGTAAACTTCAAAGC	0.463													48	82					0	0	0.003610	0	0
SEMA3E	9723	broad.mit.edu	37	7	83021940	83021940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:83021940C>T	uc003uhy.1	-	14	2064	c.1598G>A	c.(1597-1599)CGA>CAA	p.R533Q		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	533					axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				GTAAGGGTCTCGAGCCAGGCA	0.498													22	47					0	0	0.001882	0	0
ABCB1	5243	broad.mit.edu	37	7	87214866	87214866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:87214866C>T	uc003uiz.1	-	5	666	c.248G>A	c.(247-249)GGA>GAA	p.G83E	ABCB1_uc011khc.1_Missense_Mutation_p.G83E	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	83	ABC transmembrane type-1 1.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TTCTAAATTTCCTGCATTTGC	0.393													20	30					0	0	0.002299	0	0
SLC25A40	55972	broad.mit.edu	37	7	87476314	87476314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:87476314G>A	uc003uje.2	-	8	932	c.581C>T	c.(580-582)TCC>TTC	p.S194F		NM_018843	NP_061331	Q8TBP6	S2540_HUMAN	mitochondrial carrier family protein	194	Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			haematopoietic_and_lymphoid_tissue(1)	1	Esophageal squamous(14;0.00202)					CCTCCAAAGGGAAATCCAACC	0.403													40	93					0	0	0.006999	0	0
SLC25A40	55972	broad.mit.edu	37	7	87476316	87476316	+	Silent	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:87476316A>T	uc003uje.2	-	8	930	c.579T>A	c.(577-579)ATT>ATA	p.I193I		NM_018843	NP_061331	Q8TBP6	S2540_HUMAN	mitochondrial carrier family protein	193	Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			haematopoietic_and_lymphoid_tissue(1)	1	Esophageal squamous(14;0.00202)					TCCAAAGGGAAATCCAACCAT	0.403													41	100					0	0	0.007835	0	0
ANKIB1	54467	broad.mit.edu	37	7	91936786	91936786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:91936786C>T	uc003ulw.2	+	3	678	c.302C>T	c.(301-303)CCT>CTT	p.P101L		NM_019004	NP_061877	Q9P2G1	AKIB1_HUMAN	ankyrin repeat and IBR domain containing 1	101							protein binding|zinc ion binding			lung(1)	1	all_cancers(62;2.06e-09)|all_epithelial(64;9.24e-09)|Breast(17;0.0034)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|all cancers(6;0.00183)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GCCCTTCATCCTCGCTTGGCA	0.418													34	78					0	0	0.003271	0	0
SAMD9	54809	broad.mit.edu	37	7	92734479	92734479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:92734479G>A	uc003umf.2	-	3	1188	c.932C>T	c.(931-933)CCA>CTA	p.P311L	SAMD9_uc003umg.2_Missense_Mutation_p.P311L	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	311						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			AGAGAACTGTGGAATAATGTC	0.333													25	33					0	0	0.002780	0	0
SAMD9L	219285	broad.mit.edu	37	7	92763932	92763932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:92763932C>T	uc003umh.1	-	5	2569	c.1353G>A	c.(1351-1353)ATG>ATA	p.M451I	SAMD9L_uc003umj.1_Missense_Mutation_p.M451I|SAMD9L_uc003umi.1_Missense_Mutation_p.M451I|SAMD9L_uc010lfb.1_Missense_Mutation_p.M451I|SAMD9L_uc003umk.1_Missense_Mutation_p.M451I|SAMD9L_uc010lfc.1_Missense_Mutation_p.M451I|SAMD9L_uc010lfd.1_Missense_Mutation_p.M451I|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	451										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CTCCATTGATCATAGATTCAG	0.343													15	45					0	0	0.004007	0	0
CCDC132	55610	broad.mit.edu	37	7	92932784	92932784	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:92932784T>A	uc003umo.2	+	17	1502	c.1374T>A	c.(1372-1374)GAT>GAA	p.D458E	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Missense_Mutation_p.D428E|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Missense_Mutation_p.D178E	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	458											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			CACGGCTCGATGAACTGAGAA	0.338													39	84					0	0	0.007835	0	0
CALCR	799	broad.mit.edu	37	7	93098045	93098045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:93098045C>T	uc003umv.1	-	7	818	c.557G>A	c.(556-558)GGG>GAG	p.G186E	CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.G168E|CALCR_uc003umw.2_Missense_Mutation_p.G168E	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	168	Helical; Name=1; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	CACGAAAATCCCCAGGGAAAT	0.383													38	46					0	0	0.008740	0	0
SLC25A13	10165	broad.mit.edu	37	7	95813734	95813734	+	Silent	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:95813734A>C	uc003uof.3	-	11	1223	c.1032T>G	c.(1030-1032)ACT>ACG	p.T344T	SLC25A13_uc003uog.3_Silent_p.T345T|SLC25A13_uc011kik.1_Silent_p.T236T	NM_014251	NP_055066	Q9UJS0	CMC2_HUMAN	solute carrier family 25, member 13 isoform 2	344	Solcar 1.|Helical; Name=1; (Potential).				ATP biosynthetic process|gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to plasma membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity			central_nervous_system(3)|skin(1)	4	all_cancers(62;7.75e-08)|all_epithelial(64;1.16e-07)		STAD - Stomach adenocarcinoma(171;0.194)		L-Aspartic Acid(DB00128)	GATACACAGCAGTGGCTCCAA	0.373													5	21					0	0	0.001168	0	0
STAG3	10734	broad.mit.edu	37	7	99786472	99786472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:99786472C>T	uc003utx.1	+	7	703	c.548C>T	c.(547-549)TCC>TTC	p.S183F	STAG3_uc010lgs.1_5'UTR|STAG3_uc011kjk.1_Missense_Mutation_p.S125F	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	183					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CCAGGTCCATCCTGGAAGAAG	0.502													37	71					0	0	0.007835	0	0
GNB2	2783	broad.mit.edu	37	7	100275174	100275174	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:100275174C>T	uc003uwb.2	+	6	594	c.321C>T	c.(319-321)CCC>CCT	p.P107P	GNB2_uc003uwc.2_Silent_p.P63P|GNB2_uc010lhd.2_Silent_p.P63P|GNB2_uc010lhe.2_Silent_p.P63P|GNB2_uc003uwd.2_Silent_p.P7P|GNB2_uc010lhf.2_Silent_p.P7P|GNB2_uc003uwe.2_Silent_p.P107P|GNB2_uc003uwf.2_Silent_p.P7P	NM_005273	NP_005264	P62879	GBB2_HUMAN	guanine nucleotide-binding protein, beta-2	107	WD 2.				cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|synaptic transmission	perinuclear region of cytoplasm|plasma membrane	GTPase activity|GTPase binding|signal transducer activity			ovary(2)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)	Ovarian(593;0.238)				CCTACGCGCCCTCAGGGAACT	0.667													45	71					0	0	0.003214	0	0
MUC17	140453	broad.mit.edu	37	7	100678548	100678548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:100678548C>T	uc003uxp.1	+	3	3904	c.3851C>T	c.(3850-3852)CCT>CTT	p.P1284L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1284	Extracellular (Potential).|Ser-rich.|19.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACAAGTATACCTGTCAGCACC	0.473													74	177					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100679927	100679927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:100679927C>T	uc003uxp.1	+	3	5283	c.5230C>T	c.(5230-5232)CCT>TCT	p.P1744S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1744	Extracellular (Potential).|59 X approximate tandem repeats.|27.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AAACTCAACTCCTAGTGAAGG	0.493													99	246					0	0	0.003610	0	0
RELN	5649	broad.mit.edu	37	7	103205751	103205751	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:103205751G>A	uc003vca.2	-	34	5344	c.5184C>T	c.(5182-5184)ATC>ATT	p.I1728I	RELN_uc010liz.2_Silent_p.I1728I	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1728					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GGTAGACAGTGATCCGCTTCC	0.433													32	66					0	0	0.004878	0	0
PNPLA8	50640	broad.mit.edu	37	7	108143074	108143074	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:108143074G>A	uc003vff.1	-	6	1626	c.1219C>T	c.(1219-1221)CCA>TCA	p.P407S	PNPLA8_uc003vfg.1_RNA|PNPLA8_uc003vfh.1_Missense_Mutation_p.P407S|PNPLA8_uc003vfi.1_Missense_Mutation_p.P307S|PNPLA8_uc003vfj.1_Missense_Mutation_p.P407S|PNPLA8_uc003vfk.1_Missense_Mutation_p.P307S	NM_015723	NP_056538	Q9NP80	PLPL8_HUMAN	patatin-like phospholipase domain containing 8	407					fatty acid metabolic process|lipid catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|membrane fraction|perinuclear region of cytoplasm|peroxisomal membrane	ATP binding|calcium-independent phospholipase A2 activity|lysophospholipase activity			breast(2)	2						AATAAATATGGAATAATTCTT	0.343													11	28					0	0	0.000978	0	0
WNT2	7472	broad.mit.edu	37	7	116937682	116937682	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:116937682G>A	uc003viz.2	-	4	1137	c.837C>T	c.(835-837)ATC>ATT	p.I279I	WNT2_uc003vja.2_Silent_p.I183I	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	279					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		CTCGGTCCCTGATACAGTAGT	0.393													29	55					0	0	0.008361	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121698913	121698913	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:121698913C>T	uc003vjy.2	+	28	6983	c.6588C>T	c.(6586-6588)AGC>AGT	p.S2196S	PTPRZ1_uc003vjz.2_Silent_p.S1329S|PTPRZ1_uc011knt.1_Silent_p.S786S	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	2196	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						ATCCAGATAGCCCCATTAGTA	0.358													12	48					0	0	0.001855	0	0
HYAL4	23553	broad.mit.edu	37	7	123509239	123509239	+	Silent	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:123509239A>G	uc003vlc.2	+	3	1550	c.912A>G	c.(910-912)ACA>ACG	p.T304T	HYAL4_uc011knz.1_Silent_p.T304T	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	304	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						TTGTCTACACAAGGCTAGGGT	0.413													9	29					0	0	0.004482	0	0
LRGUK	136332	broad.mit.edu	37	7	133812131	133812132	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:133812131_133812132CC>TT	uc003vrm.1	+	1	27_28	c.11_12CC>TT	c.(10-12)TCC>TTT	p.S4F		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	4							ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						ATGGCGACCTCCGAGAGGGCTC	0.614													26	78					0	0	0.004672	0	0
CREB3L2	64764	broad.mit.edu	37	7	137590526	137590526	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:137590526A>T	uc003vtw.2	-	6	1232	c.837T>A	c.(835-837)TAT>TAA	p.Y279*	CREB3L2_uc003vtx.1_Nonsense_Mutation_p.Y279*|CREB3L2_uc003vtv.2_Nonsense_Mutation_p.Y216*	NM_194071	NP_919047	Q70SY1	CR3L2_HUMAN	cAMP responsive element binding protein 3-like	279	Cytoplasmic (Potential).				chondrocyte differentiation|positive regulation of transcription, DNA-dependent|response to endoplasmic reticulum stress|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	cAMP response element binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L2(158)	soft_tissue(158)|upper_aerodigestive_tract(1)|ovary(1)	160						TGGGGATGGGATAGCCCTCAG	0.512			T	FUS	fibromyxoid sarcoma								49	116					0	0	0.003610	0	0
KIAA1549	57670	broad.mit.edu	37	7	138596019	138596019	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:138596019G>A	uc011kql.1	-	4	3067	c.3018C>T	c.(3016-3018)TTC>TTT	p.F1006F	KIAA1549_uc003vuk.3_Silent_p.F956F|KIAA1549_uc011kqj.1_Silent_p.F1006F	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1006	Helical; (Potential).					integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CCGTGTAAACGAAAGGACCGG	0.383			O	BRAF	pilocytic astrocytoma								7	9					0	0	0.003080	0	0
BRAF	673	broad.mit.edu	37	7	140481411	140481411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:140481411C>T	uc003vwc.3	-	11	1458	c.1397G>A	c.(1396-1398)GGA>GAA	p.G466E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	466	ATP (By similarity).|Protein kinase.		G -> V (in LNCR).|G -> A (in melanoma).|G -> E (in melanoma).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.G466V(12)|p.G466E(5)|p.G466A(3)|p.G466R(2)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCCAAATGATCCAGATCCAAT	0.378	G466V(NCIH1666_LUNG)|G466V(CAL12T_LUNG)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				32	69					0	0	0.002096	0	0
TAS2R5	54429	broad.mit.edu	37	7	141490332	141490332	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:141490332C>T	uc003vwr.1	+	1	316	c.171C>T	c.(169-171)CTC>CTT	p.L57L		NM_018980	NP_061853	Q9NYW4	TA2R5_HUMAN	taste receptor T2R5	57	Helical; Name=2; (Potential).				chemosensory behavior|sensory perception of taste		taste receptor activity				0	Melanoma(164;0.0171)					GCCGATTTCTCCTGCAGTGGC	0.483													30	56					0	0	0.002096	0	0
MGAM	8972	broad.mit.edu	37	7	141765190	141765190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:141765190C>T	uc003vwy.2	+	38	4594	c.4540C>T	c.(4540-4542)CCC>TCC	p.P1514S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1514	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CTCCACATTTCCCTCTTCTGG	0.612													7	7					0	0	0.001984	0	0
PRSS1	5644	broad.mit.edu	37	7	142459673	142459673	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:142459673G>A	uc003wak.2	+	3	266	c.249G>A	c.(247-249)GGG>GGA	p.G83G	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_3'UTR|PRSS1_uc003wam.2_Silent_p.G23G	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	83	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			TCCTGGAGGGGAATGAGCAGT	0.547									Hereditary_Pancreatitis				56	127					0	0	0.003610	0	0
TRY6	154754	broad.mit.edu	37	7	142478851	142478851	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:142478851C>T	uc011ksq.1	+	1	95	c.12C>T	c.(10-12)CTC>CTT	p.L4L	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|uc003wan.1_Intron|TRY6_uc011kso.1_Intron|TRY6_uc011ksr.1_5'Flank	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						TGAATCCACTCCTGATCCTTG	0.572													8	12					0	0	0.006214	0	0
TRPV5	56302	broad.mit.edu	37	7	142625961	142625961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:142625961C>T	uc003wby.1	-	6	851	c.587G>A	c.(586-588)GGA>GAA	p.G196E	TRPV5_uc003wbz.2_Missense_Mutation_p.G196E	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	196	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					TACTGTGTTTCCTGGGGAGGA	0.552													32	72					0	0	0.002836	0	0
TAS2R40	259286	broad.mit.edu	37	7	142919714	142919714	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:142919714G>A	uc011ksx.1	+	1	543	c.543G>A	c.(541-543)ACG>ACA	p.T181T		NM_176882	NP_795363	P59535	T2R40_HUMAN	taste receptor, type 2, member 40	181	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity	p.T181T(1)		ovary(1)	1	Melanoma(164;0.059)					CCAACTCCACGGAGAAGAAGT	0.458													57	96					0	0	0.003610	0	0
CLCN1	1180	broad.mit.edu	37	7	143049035	143049035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:143049035G>A	uc003wcr.1	+	23	3031	c.2944G>A	c.(2944-2946)GAT>AAT	p.D982N	CLCN1_uc011ktc.1_Missense_Mutation_p.D594N	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	982	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					AGACGAGGAGGATGAGGATGA	0.627													47	64					0	0	0.003610	0	0
TAS2R60	338398	broad.mit.edu	37	7	143140671	143140671	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:143140671G>A	uc011ktg.1	+	1	126	c.126G>A	c.(124-126)CTG>CTA	p.L42L	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	42	Helical; Name=2; (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					CTGCTGCTCTGGGCGTGGAGT	0.498													34	94					0	0	0.003755	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141013	143141013	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:143141013C>T	uc011ktg.1	+	1	468	c.468C>T	c.(466-468)ACC>ACT	p.T156T	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	156	Extracellular (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					GCTTCACCACCATTCTATTTT	0.473													69	105					0	0	0.003610	0	0
OR2F1	26211	broad.mit.edu	37	7	143657714	143657714	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:143657714C>T	uc003wds.1	+	1	695	c.651C>T	c.(649-651)TCC>TCT	p.S217S		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					TTCTTTTGTCCTACATCCAGA	0.502													41	71					0	0	0.002222	0	0
OR2A5	393046	broad.mit.edu	37	7	143747612	143747613	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:143747612_143747613GG>AA	uc011ktw.1	+	1	118_119	c.118_119GG>AA	c.(118-120)GGA>AAA	p.G40K		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					CACCCTGCTGGGAAATGGGGCC	0.51													31	62					0	0	0.004672	0	0
OR2A5	393046	broad.mit.edu	37	7	143747845	143747845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:143747845G>A	uc011ktw.1	+	1	351	c.351G>A	c.(349-351)ATG>ATA	p.M117I		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					TCTTGGTAATGATGTCCTACG	0.458													44	120					0	0	0.002852	0	0
OR2A12	346525	broad.mit.edu	37	7	143793082	143793082	+	Silent	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:143793082A>C	uc011kty.1	+	1	882	c.882A>C	c.(880-882)GCA>GCC	p.A294A		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	294	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					TTAGGAATGCAGAGGTGAAAG	0.458													86	164					0	0	0.003610	0	0
TPK1	27010	broad.mit.edu	37	7	144320338	144320338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:144320338G>A	uc003weq.2	-	6	378	c.275C>T	c.(274-276)TCA>TTA	p.S92L	TPK1_uc003weo.2_Missense_Mutation_p.S87L|TPK1_uc003wep.2_RNA|TPK1_uc003wer.2_Missense_Mutation_p.S92L|TPK1_uc003wes.2_RNA	NM_022445	NP_071890	Q9H3S4	TPK1_HUMAN	thiamin pyrophosphokinase 1 isoform a	92					thiamine diphosphate biosynthetic process	cytosol	ATP binding|kinase activity|thiamine diphosphokinase activity			ovary(2)	2					Thiamine(DB00152)	ATCAGGAGTTGAAATGAGCTC	0.308													98	213					0	0	0.003610	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146825806	146825806	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:146825806T>A	uc003weu.1	+	7	1477	c.961T>A	c.(961-963)TTC>ATC	p.F321I		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	321	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AGGCATCCCTTTCTCTGGCAA	0.393										HNSCC(39;0.1)			31	76					0	0	0.002096	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147092819	147092819	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:147092819G>A	uc003weu.1	+	10	2133	c.1617G>A	c.(1615-1617)AGG>AGA	p.R539R		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	539	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TGGCACAAAGGAAGCCGGGAA	0.433										HNSCC(39;0.1)			41	92					0	0	0.002222	0	0
C7orf29	113763	broad.mit.edu	37	7	150028134	150028134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:150028134C>T	uc003wgy.2	+	1	1197	c.641C>T	c.(640-642)GCT>GTT	p.A214V	LRRC61_uc003wgv.2_Intron|LRRC61_uc003wgx.2_Intron|LRRC61_uc003wgw.2_Intron	NM_138434	NP_612443	Q96FA7	CG029_HUMAN	hypothetical protein LOC113763	214										ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			GACCCCCTGGCTTACTGGGAG	0.577													6	31					0	0	0.001168	0	0
RARRES2	5919	broad.mit.edu	37	7	150036168	150036168	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:150036168C>T	uc003wha.2	-	4	399	c.282G>A	c.(280-282)AGG>AGA	p.R94R	RARRES2_uc010lpp.1_Silent_p.R94R	NM_002889	NP_002880	Q99969	RARR2_HUMAN	chemerin preproprotein	94					embryonic digestive tract development|in utero embryonic development|positive regulation of macrophage chemotaxis|retinoid metabolic process	extracellular matrix	receptor binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			ATTTCCGTTTCCTCTGTGGGG	0.607													35	55					0	0	0.002836	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174737	150174737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:150174737G>A	uc003whj.2	+	5	2197	c.1867G>A	c.(1867-1869)GAT>AAT	p.D623N		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	623	Potential.					endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		AAAGGTCAATGATCTGAGAAA	0.438													43	77					0	0	0.002222	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217095	150217095	+	Silent	SNP	C	T	T	rs142236871	by1000genomes	TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:150217095C>T	uc003whk.2	+	2	163	c.33C>T	c.(31-33)ATC>ATT	p.I11I		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	11							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCCTGAGGATCGTTCTGGTAG	0.498													23	49					0	0	0.003954	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217918	150217918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:150217918G>A	uc003whk.2	+	2	986	c.856G>A	c.(856-858)GAA>AAA	p.E286K		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	286							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GATGCTTTCAGAAATATGGCA	0.234													8	29					0	0	0.008291	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325007	150325007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:150325007C>T	uc003whn.2	-	3	1103	c.679G>A	c.(679-681)GAA>AAA	p.E227K	GIMAP6_uc003whm.2_Missense_Mutation_p.E147K	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	227							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TAATCTCCTTCGTTTTCCCAC	0.512													40	111					0	0	0.007835	0	0
GIMAP6	474344	broad.mit.edu	37	7	150327161	150327161	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:150327161G>A	uc003whn.2	-	2	494	c.70C>T	c.(70-72)CTG>TTG	p.L24L	GIMAP6_uc003whm.2_Silent_p.C18C	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	24							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GACAGCTCCAGCACAGGATCC	0.458													55	149					0	0	0.003610	0	0
TMEM176A	55365	broad.mit.edu	37	7	150499311	150499311	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:150499311G>A	uc003whx.1	+	3	261	c.183G>A	c.(181-183)CAG>CAA	p.Q61Q	TMEM176B_uc003whu.3_5'Flank|TMEM176B_uc003whv.3_5'Flank|TMEM176B_uc003whw.3_5'Flank	NM_018487	NP_060957	Q96HP8	T176A_HUMAN	hepatocellular carcinoma-associated antigen 112	61	Helical; (Potential).					integral to membrane				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGGTGATGCAGATCGTGCTGG	0.557													21	61					0	0	0.001523	0	0
ABP1	26	broad.mit.edu	37	7	150553894	150553894	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:150553894C>T	uc003why.1	+	3	4554	c.336C>T	c.(334-336)ACC>ACT	p.T112T	ABP1_uc003whz.1_Silent_p.T112T|ABP1_uc003wia.1_Silent_p.T112T	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	112					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	CCAATGTCACCGAGTTTGCTG	0.602													23	75					0	0	0.002299	0	0
NOS3	4846	broad.mit.edu	37	7	150696302	150696302	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:150696302C>T	uc003wif.2	+	9	1277	c.981C>T	c.(979-981)GGC>GGT	p.G327G	NOS3_uc011kuy.1_Silent_p.G121G|NOS3_uc011kuz.1_Silent_p.G327G|NOS3_uc011kva.1_Silent_p.G327G|NOS3_uc011kvb.1_Silent_p.G327G	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	327	Interaction with NOSIP.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	CAGCCCTGGGCCTGCGCTGGT	0.652													40	71					0	0	0.006999	0	0
GBX1	2636	broad.mit.edu	37	7	150864110	150864110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:150864110G>A	uc011kvg.1	-	1	758	c.526C>T	c.(526-528)CCA>TCA	p.P176S		NM_001098834	NP_001092304	Q14549	GBX1_HUMAN	gastrulation brain homeo box 1	176	Pro-rich.					nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.00989)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGCAGACTTGGAAAAGTCTCT	0.652													28	76					0	0	0.001786	0	0
CHPF2	54480	broad.mit.edu	37	7	150931226	150931226	+	Silent	SNP	C	T	T	rs143803281	byFrequency	TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:150931226C>T	uc003wjr.1	+	1	1642	c.129C>T	c.(127-129)GTC>GTT	p.V43V	CHPF2_uc003wjq.1_Silent_p.V35V	NM_019015	NP_061888	Q9P2E5	CHPF2_HUMAN	chondroitin polymerizing factor 2	43	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity			ovary(1)	1						ATCCCTGTGTCGAGGCTGTAG	0.597													27	63					0	0	0.008361	0	0
MLL3	58508	broad.mit.edu	37	7	151878118	151878118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:151878118G>A	uc003wla.2	-	36	7046	c.6827C>T	c.(6826-6828)CCT>CTT	p.P2276L	MLL3_uc003wkz.2_Missense_Mutation_p.P1337L	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2276	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGGGGGCCTAGGTGTCTGGGA	0.532			N		medulloblastoma								29	59					0	0	0.001786	0	0
DLGAP2	9228	broad.mit.edu	37	8	1616567	1616567	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:1616567C>T	uc003wpl.2	+	6	1740	c.1643C>T	c.(1642-1644)TCG>TTG	p.S548L	DLGAP2_uc003wpm.2_Missense_Mutation_p.S548L	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	627					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		CCTCTGATCTCGGTGACGGCG	0.602													6	10					0	0	0.001984	0	0
CSMD1	64478	broad.mit.edu	37	8	3266994	3266994	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:3266994G>A	uc011kwk.1	-	13	2088	c.1698C>T	c.(1696-1698)ATC>ATT	p.I566I	CSMD1_uc011kwj.1_5'UTR	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	566	Extracellular (Potential).|Sushi 3.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GCTGACAGGTGATAACTCTCT	0.557													6	13					0	0	0.001984	0	0
CSMD1	64478	broad.mit.edu	37	8	3889592	3889592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:3889592C>T	uc011kwk.1	-	4	835	c.445G>A	c.(445-447)GGA>AGA	p.G149R		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	149	Extracellular (Potential).|Sushi 1.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGGATTTCTCCAGGATTTCCA	0.413													13	45					0	0	0.001368	0	0
MFHAS1	9258	broad.mit.edu	37	8	8749330	8749330	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:8749330G>A	uc003wsj.1	-	1	1802	c.1239C>T	c.(1237-1239)CTC>CTT	p.L413L		NM_004225	NP_004216	Q9Y4C4	MFHA1_HUMAN	malignant fibrous histiocytoma amplified	413	Roc.										0		Hepatocellular(245;0.217)		COAD - Colon adenocarcinoma(149;0.124)		GCCCCATCAGGAGCAGCTTGA	0.622													23	45					0	0	0.003330	0	0
RP1L1	94137	broad.mit.edu	37	8	10464745	10464745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:10464745G>A	uc003wtc.2	-	4	7092	c.6863C>T	c.(6862-6864)CCC>CTC	p.P2288L		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	2288					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCTTTGGTGGGGAGTGTCTCC	0.582													60	164					0	0	0.003610	0	0
RP1L1	94137	broad.mit.edu	37	8	10468037	10468038	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:10468037_10468038CC>TT	uc003wtc.2	-	4	3799_3800	c.3570_3571GG>AA	c.(3568-3573)ACGGAG>ACAAAG	p.E1191K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1191					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GTGAAGTTCTCCGTCATGGCAT	0.624													11	20					0	0	0.004672	0	0
XKR6	286046	broad.mit.edu	37	8	10756149	10756149	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:10756149C>T	uc003wtk.1	-	3	1266	c.1239G>A	c.(1237-1239)TGG>TGA	p.W413*		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	413	Helical; (Potential).					integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		GGATCTCCTCCCACTTGGACA	0.488													14	25					0	0	0.002450	0	0
XKR6	286046	broad.mit.edu	37	8	10782166	10782166	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:10782166C>T	uc003wtk.1	-	2	966	c.939G>A	c.(937-939)AAG>AAA	p.K313K		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	313						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		CGGCGCTGTTCTTCTGGAGCA	0.512													34	61					0	0	0.003755	0	0
SGCZ	137868	broad.mit.edu	37	8	13965682	13965683	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:13965682_13965683GG>AA	uc003wwq.2	-	6	1269_1270	c.609_610CC>TT	c.(607-612)TCCCAA>TCTTAA	p.Q204*	SGCZ_uc010lss.2_Nonsense_Mutation_p.Q157*	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	191	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		CTGAGATCTTGGGATGGCTCTG	0.436													25	46					0	0	0.004672	0	0
TUSC3	7991	broad.mit.edu	37	8	15601097	15601097	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:15601097A>G	uc003wwt.2	+	8	1123	c.913A>G	c.(913-915)AAA>GAA	p.K305E	TUSC3_uc003wwu.2_Missense_Mutation_p.K305E|TUSC3_uc003wwv.2_Missense_Mutation_p.K305E|TUSC3_uc003www.2_Missense_Mutation_p.K305E|TUSC3_uc003wwx.2_RNA|TUSC3_uc003wwy.2_3'UTR	NM_006765	NP_006756	Q13454	TUSC3_HUMAN	tumor suppressor candidate 3 isoform a	305					cell redox homeostasis|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				ovary(2)|central_nervous_system(1)	3				Colorectal(111;0.113)		AGCAACTTCGAAAGGCGATGT	0.378													92	206					0	0	0.003610	0	0
MSR1	4481	broad.mit.edu	37	8	16012593	16012593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:16012593C>T	uc003wwz.2	-	6	1076	c.878G>A	c.(877-879)CGA>CAA	p.R293Q	MSR1_uc010lsu.2_Missense_Mutation_p.R311Q|MSR1_uc003wxa.2_Missense_Mutation_p.R293Q|MSR1_uc003wxb.2_Missense_Mutation_p.R293Q|MSR1_uc011kxz.1_Missense_Mutation_p.R67Q	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	293	Collagen-like.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		TGGAAATCCTCGTGGACCACT	0.418													9	42					0	0	0.006214	0	0
XPO7	23039	broad.mit.edu	37	8	21842176	21842176	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:21842176C>T	uc003xaa.3	+	12	1399	c.1297C>T	c.(1297-1299)CTG>TTG	p.L433L	XPO7_uc010lti.2_Silent_p.L442L|XPO7_uc010ltk.2_Silent_p.L434L	NM_015024	NP_055839	Q9UIA9	XPO7_HUMAN	exportin 7 isoform b	433				Missing (in Ref. 3; BAA34465).	mRNA transport|protein export from nucleus|transmembrane transport	cytoplasm|nuclear pore	nuclear export signal receptor activity|protein transporter activity			ovary(1)|kidney(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5				Colorectal(74;0.0187)|COAD - Colon adenocarcinoma(73;0.0724)		GGAAGATCCCCTGGAGGATAC	0.502													9	20					0	0	0.004482	0	0
PIWIL2	55124	broad.mit.edu	37	8	22140560	22140560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:22140560G>A	uc003xbn.2	+	5	587	c.439G>A	c.(439-441)GGG>AGG	p.G147R	PIWIL2_uc011kzf.1_Missense_Mutation_p.G147R|PIWIL2_uc010ltv.2_Missense_Mutation_p.G147R	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	147					DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		GCTTGGAAGAGGGAGTTCAGA	0.502													13	45					0	0	0.003163	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24255246	24255246	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:24255246G>A	uc003xdz.2	+	7	898	c.678G>A	c.(676-678)CTG>CTA	p.L226L	ADAMDEC1_uc010lub.2_Silent_p.L147L|ADAMDEC1_uc011lab.1_Silent_p.L147L	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	226	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		ATTTGGTGCTGGATAATGCCT	0.353													13	27					0	0	0.003163	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24256934	24256934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:24256934G>A	uc003xdz.2	+	10	1178	c.958G>A	c.(958-960)GGA>AGA	p.G320R	ADAMDEC1_uc010lub.2_Missense_Mutation_p.G241R|ADAMDEC1_uc011lab.1_Missense_Mutation_p.G241R	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	320	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		TCGACGTGTGGGACTGGCAGC	0.368													27	85					0	0	0.003271	0	0
ADAM7	8756	broad.mit.edu	37	8	24346820	24346820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:24346820G>A	uc003xeb.2	+	12	1353	c.1240G>A	c.(1240-1242)GAA>AAA	p.E414K	ADAM7_uc003xec.2_Missense_Mutation_p.E186K	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	414	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		GGATGAGGGTGAAGAGTGTGA	0.393													9	31					0	0	0.006214	0	0
NEFM	4741	broad.mit.edu	37	8	24775820	24775820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:24775820G>A	uc003xed.3	+	3	2485	c.2452G>A	c.(2452-2454)GAA>AAA	p.E818K	NEFM_uc011lac.1_Missense_Mutation_p.E600K|NEFM_uc010lue.2_Missense_Mutation_p.E442K	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	818	Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		ggagaccaaggaaaaaggcag	0.174													5	9					0	0	0.000602	0	0
CLU	1191	broad.mit.edu	37	8	27468013	27468013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:27468013C>T	uc003xfw.1	-	1	134	c.76G>A	c.(76-78)GTC>ATC	p.V26I	CLU_uc010lux.1_5'UTR|CLU_uc003xfx.1_Missense_Mutation_p.V26I|CLU_uc003xfy.1_Missense_Mutation_p.V37I|CLU_uc003xfz.1_Missense_Mutation_p.V78I	NM_203339	NP_976084	P10909	CLUS_HUMAN	clusterin isoform 2	26					chaperone-mediated protein folding|complement activation, classical pathway|innate immune response|lipid metabolic process|negative regulation of apoptosis|negative regulation of protein homooligomerization|platelet activation|platelet degranulation|positive regulation of NF-kappaB transcription factor activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|response to misfolded protein|response to virus|reverse cholesterol transport	chromaffin granule|cytosol|endoplasmic reticulum|microsome|mitochondrial membrane|nucleus|perinuclear region of cytoplasm|platelet alpha granule lumen|spherical high-density lipoprotein particle	misfolded protein binding|ubiquitin protein ligase binding			ovary(2)	2		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|Colorectal(74;0.132)		TTGTCTGAGACCGTCTGGTCC	0.567													29	54					0	0	0.001786	0	0
C8orf80	389643	broad.mit.edu	37	8	27925067	27925067	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:27925067G>A	uc003xgm.3	-	6	818	c.675C>T	c.(673-675)ATC>ATT	p.I225I		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	225						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		TGGAGGTGGGGATCTTCCTTT	0.483													7	15					0	0	0.001984	0	0
TEX15	56154	broad.mit.edu	37	8	30699874	30699874	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:30699874C>T	uc003xil.2	-	1	6660	c.6660G>A	c.(6658-6660)AGG>AGA	p.R2220R		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2220										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CTAAATCTTTCCTAGGGGCAG	0.338													31	83					0	0	0.001786	0	0
UNC5D	137970	broad.mit.edu	37	8	35647877	35647877	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:35647877G>A	uc003xjr.1	+	17	2986	c.2658G>A	c.(2656-2658)AGG>AGA	p.R886R	UNC5D_uc003xjs.1_Silent_p.R881R|UNC5D_uc003xju.1_Silent_p.R462R	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	886	Death.|Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		CTCCATCTAGGAATTTATCTT	0.363													27	53					0	0	0.004656	0	0
KCNU1	157855	broad.mit.edu	37	8	36768475	36768475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:36768475C>T	uc010lvw.2	+	22	2446	c.2359C>T	c.(2359-2361)CAT>TAT	p.H787Y	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	787	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		TGGAGACCTCCATGCGGCCAA	0.527													20	51					0	0	0.001882	0	0
IDO2	169355	broad.mit.edu	37	8	39872876	39872876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:39872876G>A	uc010lwy.1	+	11	1260	c.1018G>A	c.(1018-1020)GAC>AAC	p.D340N	IDO2_uc003xno.1_RNA|IDO2_uc010lwz.1_Missense_Mutation_p.D81N|IDO2_uc003xnp.1_Missense_Mutation_p.D81N	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	327					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						ATCTGGACAGGACCACTTGCT	0.522													14	36					0	0	0.002450	0	0
PXDNL	137902	broad.mit.edu	37	8	52323826	52323826	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:52323826C>T	uc003xqu.3	-	16	2147	c.2046G>A	c.(2044-2046)GTG>GTA	p.V682V	PXDNL_uc003xqt.3_5'Flank	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	682					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CTTCCAAGTCCACAGTGAGCC	0.507													4	8					0	0	0.000248	0	0
RP1	6101	broad.mit.edu	37	8	55537472	55537472	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:55537472G>A	uc003xsd.1	+	4	1178	c.1030G>A	c.(1030-1032)GAA>AAA	p.E344K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	344					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AATAAAAGAGGAAGAAACCAT	0.338													17	24					0	0	0.004990	0	0
RP1	6101	broad.mit.edu	37	8	55539350	55539350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:55539350G>A	uc003xsd.1	+	4	3056	c.2908G>A	c.(2908-2910)GAA>AAA	p.E970K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	970					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TTTTGTTATGGAAAGTAATAA	0.328													24	55					0	0	0.002780	0	0
RP1	6101	broad.mit.edu	37	8	55540288	55540288	+	Silent	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:55540288T>C	uc003xsd.1	+	4	3994	c.3846T>C	c.(3844-3846)CCT>CCC	p.P1282P	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1282					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CTTTTTTTCCTAGTGATGGTT	0.408													48	117					0	0	0.003610	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228813	57228813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:57228813G>A	uc003xsy.1	-	2	732	c.94C>T	c.(94-96)CCA>TCA	p.P32S	SDR16C5_uc010lyk.1_Missense_Mutation_p.P32S|SDR16C5_uc010lyl.1_Missense_Mutation_p.P32S	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	32					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CGTGGCTTTGGGAGTAAGGCA	0.463													25	34					0	0	0.004656	0	0
CA8	767	broad.mit.edu	37	8	61121413	61121413	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:61121413C>T	uc003xtz.1	-	8	1052	c.804G>A	c.(802-804)GGG>GGA	p.G268G	CA8_uc003xua.1_Silent_p.G268G	NM_004056	NP_004047	P35219	CAH8_HUMAN	carbonic anhydrase VIII	268					one-carbon metabolic process		carbonate dehydratase activity|zinc ion binding				0		all_cancers(86;0.172)|all_epithelial(80;0.0383)|all_lung(136;0.0413)|Lung NSC(129;0.0474)				CTCCCAAAATCCCATCACAGC	0.428													20	45					0	0	0.001523	0	0
CLVS1	157807	broad.mit.edu	37	8	62412051	62412051	+	Missense_Mutation	SNP	G	A	A	rs35623706		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:62412051G>A	uc003xuh.2	+	6	1339	c.1015G>A	c.(1015-1017)GAG>AAG	p.E339K	CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Silent_p.*260*	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	339					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						CCTGAAACATGAGGAGAAGGG	0.498													17	45					0	0	0.004990	0	0
MTFR1	9650	broad.mit.edu	37	8	66594616	66594616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:66594616C>T	uc003xvm.2	+	3	307	c.95C>T	c.(94-96)TCG>TTG	p.S32L	MTFR1_uc011lep.1_Missense_Mutation_p.S32L|MTFR1_uc003xvn.2_Intron|MTFR1_uc003xvo.1_Missense_Mutation_p.S22L	NM_014637	NP_055452	Q15390	MTFR1_HUMAN	mitochondrial fission regulator 1 isoform 1	32						mitochondrion|plasma membrane				pancreas(1)	1			Epithelial(68;0.0526)|BRCA - Breast invasive adenocarcinoma(89;0.156)|all cancers(69;0.171)|OV - Ovarian serous cystadenocarcinoma(28;0.194)			CCATATGGTTCGTCTCGAAGT	0.328													13	36					0	0	0.004990	0	0
RDH10	157506	broad.mit.edu	37	8	74209456	74209456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:74209456C>T	uc003xzi.2	+	2	577	c.317C>T	c.(316-318)CCC>CTC	p.P106L	RDH10_uc003xzj.2_5'UTR	NM_172037	NP_742034	Q8IZV5	RDH10_HUMAN	retinol dehydrogenase 10	106					retinal metabolic process|retinol metabolic process|visual perception	endoplasmic reticulum membrane|integral to membrane|microsome	binding|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity				0	Breast(64;0.0954)		Epithelial(68;0.0105)|all cancers(69;0.0465)|BRCA - Breast invasive adenocarcinoma(89;0.0608)			GAAATTCTGCCCCACTGTAAC	0.507													25	22					0	0	0.004656	0	0
HNF4G	3174	broad.mit.edu	37	8	76459858	76459858	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:76459858G>A	uc003yaq.2	+	4	453	c.183G>A	c.(181-183)AGG>AGA	p.R61R	HNF4G_uc003yap.1_Silent_p.R61R|HNF4G_uc003yar.2_Silent_p.R98R	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	61	Nuclear receptor.|NR C4-type.				endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			AGGACAAAAGGAATCAATGTA	0.289													43	105					0	0	0.003610	0	0
HNF4G	3174	broad.mit.edu	37	8	76471192	76471192	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:76471192A>T	uc003yaq.2	+	9	1172	c.902A>T	c.(901-903)CAA>CTA	p.Q301L	HNF4G_uc003yar.2_Missense_Mutation_p.Q338L	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	301					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			ATCACGTGGCAAATGATTGAG	0.428													30	81					0	0	0.008361	0	0
TPD52	7163	broad.mit.edu	37	8	80992579	80992579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:80992579G>A	uc003ybr.1	-	1	432	c.110C>T	c.(109-111)CCA>CTA	p.P37L	TPD52_uc010lzr.2_RNA|TPD52_uc010lzs.1_Intron|TPD52_uc003ybs.1_Intron|TPD52_uc003ybt.1_Intron	NM_001025252	NP_001020423	P55327	TPD52_HUMAN	tumor protein D52 isoform 1	37					anatomical structure morphogenesis|B cell differentiation|secretion	endoplasmic reticulum|perinuclear region of cytoplasm	calcium ion binding|protein heterodimerization activity|protein homodimerization activity			ovary(1)	1	all_epithelial(4;1.13e-09)|Lung NSC(7;9.71e-07)|all_lung(9;3.75e-06)	Lung NSC(129;3.55e-06)|all_lung(136;1.53e-05)|Acute lymphoblastic leukemia(644;0.158)	BRCA - Breast invasive adenocarcinoma(6;0.00181)|Epithelial(68;0.0149)|all cancers(69;0.0612)			TGATCCGGGTGGAGATGAATT	0.403													25	28					0	0	0.006320	0	0
REXO1L1	254958	broad.mit.edu	37	8	86574497	86574497	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:86574497G>A	uc011lfw.1	-	1	772	c.726C>T	c.(724-726)TCC>TCT	p.S242S		NM_172239	NP_758439	Q8IX06	GOR_HUMAN	exonuclease GOR	410	GOR1-125 epitope.					cytoplasm|nucleus	exonuclease activity|nucleic acid binding				0						AGACCCTACAGGAGGAGTCGC	0.672													7	19					0	0	0.003080	0	0
CNGB3	54714	broad.mit.edu	37	8	87641194	87641194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:87641194C>T	uc003ydx.2	-	12	1479	c.1433G>A	c.(1432-1434)CGA>CAA	p.R478Q	CNGB3_uc010maj.2_Missense_Mutation_p.R340Q	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	478	Extracellular (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						AGTCCGAACTCGCTTTTGCAC	0.423													55	130					0	0	0.003610	0	0
CNGB3	54714	broad.mit.edu	37	8	87738864	87738864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:87738864G>A	uc003ydx.2	-	3	279	c.233C>T	c.(232-234)TCC>TTC	p.S78F		NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	78	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						ATCTCCAGAGGAATTTTTCTT	0.428													86	203					0	0	0.003610	0	0
NBN	4683	broad.mit.edu	37	8	90965699	90965699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:90965699G>A	uc003yej.1	-	11	1728	c.1618C>T	c.(1618-1620)CAT>TAT	p.H540Y	NBN_uc003yei.1_Missense_Mutation_p.H458Y|NBN_uc011lgb.1_Missense_Mutation_p.H540Y	NM_002485	NP_002476	O60934	NBN_HUMAN	nibrin	540					cell cycle arrest|DNA damage response, signal transduction by p53 class mediator|DNA duplex unwinding|double-strand break repair via homologous recombination|meiosis|mitotic cell cycle G1/S transition checkpoint|mitotic cell cycle G2/M transition DNA damage checkpoint|positive regulation of kinase activity|positive regulation of protein autophosphorylation|regulation of DNA-dependent DNA replication initiation|telomere maintenance	Mre11 complex|nuclear chromosome, telomeric region|nuclear inclusion body|nucleolus|nucleoplasm	protein N-terminus binding|transcription factor binding			central_nervous_system(3)|kidney(3)|lung(1)	7			BRCA - Breast invasive adenocarcinoma(11;0.0344)			TCTGCAGCATGAGATTTACTG	0.348								Direct_reversal_of_damage|Homologous_recombination	Nijmegen_Breakage_syndrome				40	92					0	0	0.004878	0	0
PDP1	54704	broad.mit.edu	37	8	94935031	94935031	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:94935031C>T	uc003yge.2	+	2	1013	c.744C>T	c.(742-744)TCC>TCT	p.S248S	PDP1_uc003ygf.2_Silent_p.S273S|PDP1_uc010max.2_Silent_p.S273S|PDP1_uc011lgm.1_Silent_p.S248S|PDP1_uc011lgn.1_Silent_p.S307S	NM_018444	NP_060914	Q9P0J1	PDP1_HUMAN	pyruvate dehyrogenase phosphatase catalytic	248					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						ATGACATCTCCTTGGAGGCGC	0.468													32	81					0	0	0.003755	0	0
RGS22	26166	broad.mit.edu	37	8	101016247	101016247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:101016247G>A	uc003yjb.1	-	17	2729	c.2534C>T	c.(2533-2535)CCT>CTT	p.P845L	RGS22_uc003yja.1_Missense_Mutation_p.P664L|RGS22_uc003yjc.1_Missense_Mutation_p.P833L|RGS22_uc011lgz.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	845					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			GTATTCTGCAGGAACATTATC	0.373													24	39					0	0	0.003330	0	0
UBR5	51366	broad.mit.edu	37	8	103340049	103340049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:103340049G>A	uc003ykr.1	-	12	1435	c.1402C>T	c.(1402-1404)CTT>TTT	p.L468F	UBR5_uc003yks.1_Missense_Mutation_p.L468F	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	468					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			TCTCCTTGAAGTTCAGAGTAA	0.408													27	49					0	0	0.008361	0	0
RIMS2	9699	broad.mit.edu	37	8	105257282	105257282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:105257282G>A	uc003yls.2	+	24	3768	c.3527G>A	c.(3526-3528)GGA>GAA	p.G1176E	RIMS2_uc003ylp.2_Missense_Mutation_p.G1158E|RIMS2_uc003ylw.2_Missense_Mutation_p.G1165E|RIMS2_uc003ylq.2_Missense_Mutation_p.G972E|RIMS2_uc003ylr.2_Missense_Mutation_p.G997E	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1220					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AGCTCAGAAGGAAAGTGAGTG	0.498										HNSCC(12;0.0054)			22	52					0	0	0.002299	0	0
LRP12	29967	broad.mit.edu	37	8	105509875	105509875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:105509875G>A	uc003yma.2	-	5	1000	c.905C>T	c.(904-906)ACT>ATT	p.T302I	LRP12_uc003ymb.2_Missense_Mutation_p.T283I|LRP12_uc003ylz.2_5'Flank	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	302	Extracellular (Potential).|CUB 2.				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			TTTAAAGTCAGTGAAGCGTAA	0.378													16	25					0	0	0.004007	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815501	106815501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:106815501C>T	uc003ymd.2	+	8	3214	c.3191C>T	c.(3190-3192)TCC>TTC	p.S1064F	ZFPM2_uc011lhs.1_Missense_Mutation_p.S795F	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	1064					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GAGAACATTTCCCAGAATCCT	0.483													7	18					0	0	0.001984	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815664	106815664	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:106815664G>A	uc003ymd.2	+	8	3377	c.3354G>A	c.(3352-3354)GGG>GGA	p.G1118G	ZFPM2_uc011lhs.1_Silent_p.G849G	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	1118					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CAACCAGTGGGAAATATTGCC	0.428													5	15					0	0	0.000602	0	0
ANGPT1	284	broad.mit.edu	37	8	108348391	108348391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:108348391G>A	uc003ymn.2	-	3	1030	c.562C>T	c.(562-564)CAT>TAT	p.H188Y	ANGPT1_uc011lhv.1_5'UTR|ANGPT1_uc003ymo.2_Missense_Mutation_p.H188Y	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	188	Potential.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			TTTTTTTCATGGATCTTCAAG	0.363													7	22					0	0	0.004482	0	0
CSMD3	114788	broad.mit.edu	37	8	113662432	113662432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:113662432C>T	uc003ynu.2	-	19	3310	c.3151G>A	c.(3151-3153)GAA>AAA	p.E1051K	CSMD3_uc003yns.2_Missense_Mutation_p.E323K|CSMD3_uc003ynt.2_Missense_Mutation_p.E1011K|CSMD3_uc011lhx.1_Missense_Mutation_p.E947K	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1051	Extracellular (Potential).|Sushi 5.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TGGTTTTTTTCGCATAGAAGG	0.398										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			26	76					0	0	0.003330	0	0
COL14A1	7373	broad.mit.edu	37	8	121259887	121259887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:121259887G>A	uc003yox.2	+	21	2780	c.2515G>A	c.(2515-2517)GAG>AAG	p.E839K	COL14A1_uc003yoy.2_Missense_Mutation_p.E517K	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	839	Fibronectin type-III 7.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GCGGGTGTCCGAGGAATGGTA	0.473													19	50					0	0	0.008871	0	0
FER1L6	654463	broad.mit.edu	37	8	125074120	125074120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:125074120C>T	uc003yqw.2	+	25	3381	c.3175C>T	c.(3175-3177)CCG>TCG	p.P1059S	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1059	Cytoplasmic (Potential).|C2 4.					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GCTTCTGCACCCGCCACTGAG	0.547													48	73					0	0	0.003610	0	0
PHF20L1	51105	broad.mit.edu	37	8	133855107	133855107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:133855107G>A	uc003ytt.2	+	19	3060	c.2735G>A	c.(2734-2736)GGA>GAA	p.G912E	PHF20L1_uc011lja.1_Missense_Mutation_p.G886E	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	912							nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			AAAGAACATGGAATGCCTGAA	0.348													40	86					0	0	0.002852	0	0
TG	7038	broad.mit.edu	37	8	133882003	133882003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:133882003C>T	uc003ytw.2	+	3	247	c.206C>T	c.(205-207)TCC>TTC	p.S69F		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	69	Thyroglobulin type-1 1.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GACGGCCGCTCCTGCTGGTGT	0.662													19	65					0	0	0.008871	0	0
TG	7038	broad.mit.edu	37	8	133941344	133941344	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:133941344C>G	uc003ytw.2	+	23	4764	c.4723C>G	c.(4723-4725)CCA>GCA	p.P1575A	TG_uc010mdw.2_Missense_Mutation_p.P334A|TG_uc011ljb.1_Missense_Mutation_p.P8A|TG_uc003ytx.1_RNA	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1575					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TGAGAAGGTTCCAGAATCAAA	0.453													30	41					0	0	0.001786	0	0
FAM135B	51059	broad.mit.edu	37	8	139164922	139164922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:139164922C>T	uc003yuy.2	-	13	1967	c.1796G>A	c.(1795-1797)GGA>GAA	p.G599E	FAM135B_uc003yux.2_Missense_Mutation_p.G500E|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.G161E|FAM135B_uc003yvb.2_Missense_Mutation_p.G161E	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	599										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TTGGTGGCTTCCACCTACTAC	0.468										HNSCC(54;0.14)			29	114					0	0	0.004289	0	0
FAM135B	51059	broad.mit.edu	37	8	139164952	139164952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:139164952C>T	uc003yuy.2	-	13	1937	c.1766G>A	c.(1765-1767)AGG>AAG	p.R589K	FAM135B_uc003yux.2_Missense_Mutation_p.R490K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.R151K|FAM135B_uc003yvb.2_Missense_Mutation_p.R151K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	589										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TAGCCCAGTCCTGTCTAATCC	0.448										HNSCC(54;0.14)			28	109					0	0	0.002445	0	0
TRAPPC9	83696	broad.mit.edu	37	8	141460942	141460942	+	Silent	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:141460942A>C	uc003yvj.2	-	2	665	c.531T>G	c.(529-531)CTT>CTG	p.L177L	TRAPPC9_uc003yvh.2_Silent_p.L275L|TRAPPC9_uc003yvi.1_Silent_p.L177L	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	177					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						GGACACAGAGAAGGGGGATCT	0.522													3	15					0	0	0.000248	0	0
PTK2	5747	broad.mit.edu	37	8	141900847	141900847	+	Translation_Start_Site	SNP	G	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:141900847G>C	uc003yvu.2	-	3	220	c.-10C>G	c.(-12--8)ATCTA>ATGTA		PTK2_uc003yvs.2_Translation_Start_Site|PTK2_uc003yvt.2_Missense_Mutation_p.S19C|PTK2_uc003yvv.2_Translation_Start_Site|PTK2_uc011ljr.1_Translation_Start_Site	NM_153831	NP_722560	Q05397	FAK1_HUMAN	PTK2 protein tyrosine kinase 2 isoform a						axon guidance|blood coagulation|cellular component disassembly involved in apoptosis|ephrin receptor signaling pathway|growth hormone receptor signaling pathway|integrin-mediated signaling pathway|peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of cell adhesion mediated by integrin|signal complex assembly	cytoskeleton|cytosol|focal adhesion	ATP binding|JUN kinase binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|signal transducer activity			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6	all_cancers(97;1.05e-15)|all_epithelial(106;2.09e-14)|Lung NSC(106;1.61e-06)|all_lung(105;2.5e-06)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;2.72e-05)|Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.137)			TATTTTGCTAGATGCTAGGTA	0.348													32	44					0	0	0.002445	0	0
DENND3	22898	broad.mit.edu	37	8	142202548	142202548	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:142202548G>A	uc003yvy.2	+	21	3536	c.3258G>A	c.(3256-3258)GAG>GAA	p.E1086E	DENND3_uc010mep.2_Silent_p.E1047E|DENND3_uc003ywa.1_Silent_p.E136E|DENND3_uc003ywb.2_Silent_p.E136E	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	1086	WD 2.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			TCCTTCCTGAGGTATCCCAGC	0.582													14	38					0	0	0.003163	0	0
GML	2765	broad.mit.edu	37	8	143922605	143922605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:143922605C>T	uc003yxg.2	+	3	235	c.145C>T	c.(145-147)CCG>TCG	p.P49S		NM_002066	NP_002057	Q99445	GML_HUMAN	glycosylphosphatidylinositol anchored molecule	49	UPAR/Ly6.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|negative regulation of cell proliferation	anchored to membrane|extrinsic to membrane|plasma membrane				central_nervous_system(2)	2	all_cancers(97;4.26e-11)|all_epithelial(106;1.85e-08)|Lung NSC(106;0.000274)|all_lung(105;0.000755)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					TAGAGTATGTCCGTATCATAT	0.453													8	62					0	0	0.004482	0	0
CPSF1	29894	broad.mit.edu	37	8	145620346	145620346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:145620346G>A	uc003zcj.2	-	29	3314	c.3239C>T	c.(3238-3240)TCC>TTC	p.S1080F	MIR939_hsa-mir-939|MI0005761_5'Flank|CPSF1_uc011lld.1_RNA	NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	1080					mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			GCTGACCGGGGAGATGAGCTG	0.662													16	33					0	0	0.006122	0	0
MFSD3	113655	broad.mit.edu	37	8	145736175	145736175	+	Splice_Site	SNP	A	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:145736175A>C	uc003zdi.1	+	4	1121	c.956_splice	c.e4-2	p.G319_splice		NM_138431	NP_612440	Q96ES6	MFSD3_HUMAN	major facilitator superfamily domain containing						transmembrane transport	integral to membrane				central_nervous_system(2)	2	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			CTGCCCTCCCAGGGTCAGCCT	0.632													21	29					0	0	0.008871	0	0
C8orf33	65265	broad.mit.edu	37	8	146278518	146278518	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr8:146278518C>T	uc003zfc.3	+	3	443	c.389C>T	c.(388-390)CCC>CTC	p.P130L	C8orf33_uc003zfd.2_RNA	NM_023080	NP_075568	Q9H7E9	CH033_HUMAN	hypothetical protein LOC65265	130											0	all_cancers(97;8.72e-12)|all_epithelial(106;1.07e-10)|Lung NSC(106;7.18e-05)|all_lung(105;0.00021)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Epithelial(56;9.1e-38)|all cancers(56;7.37e-33)|BRCA - Breast invasive adenocarcinoma(115;0.0424)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.243)		AGGCAGAAACCCACCCCGAAA	0.572													20	56					0	0	0.008871	0	0
DOCK8	81704	broad.mit.edu	37	9	446428	446428	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:446428G>A	uc003zgf.2	+	44	5751	c.5639G>A	c.(5638-5640)AGG>AAG	p.R1880K	DOCK8_uc010mgu.2_Missense_Mutation_p.R1182K|DOCK8_uc010mgv.2_Missense_Mutation_p.R1780K|DOCK8_uc003zgk.2_Missense_Mutation_p.R1338K	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	1880					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		ATGAAAGACAGGGTCACATAC	0.517													48	102					0	0	0.003610	0	0
DOCK8	81704	broad.mit.edu	37	9	463581	463581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:463581G>A	uc003zgf.2	+	47	6245	c.6133G>A	c.(6133-6135)GAA>AAA	p.E2045K	DOCK8_uc010mgu.2_Missense_Mutation_p.E1347K|DOCK8_uc010mgv.2_Missense_Mutation_p.E1945K|DOCK8_uc003zgk.2_Missense_Mutation_p.E1503K	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	2045					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		ATATCAGCAGGAACTCAAAAA	0.413													25	47					0	0	0.003330	0	0
KCNV2	169522	broad.mit.edu	37	9	2718438	2718438	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:2718438C>T	uc003zho.1	+	1	913	c.699C>T	c.(697-699)TTC>TTT	p.F233F		NM_133497	NP_598004	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	233	Extracellular (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(50;0.0257)		AGGAACTCTTCCGCGACATGC	0.682													8	11					0	0	0.008291	0	0
PTPRD	5789	broad.mit.edu	37	9	8504401	8504401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:8504401C>T	uc003zkk.2	-	22	2393	c.1682G>A	c.(1681-1683)CGA>CAA	p.R561Q	PTPRD_uc003zkp.2_Missense_Mutation_p.R561Q|PTPRD_uc003zkq.2_Missense_Mutation_p.R561Q|PTPRD_uc003zkr.2_Missense_Mutation_p.R555Q|PTPRD_uc003zks.2_Missense_Mutation_p.R551Q|PTPRD_uc003zkl.2_Missense_Mutation_p.R561Q|PTPRD_uc003zkm.2_Missense_Mutation_p.R548Q|PTPRD_uc003zkn.2_Missense_Mutation_p.R561Q|PTPRD_uc003zko.2_Missense_Mutation_p.R558Q	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	561	Fibronectin type-III 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AATGGTAATTCGTTGCTGGAA	0.433										TSP Lung(15;0.13)			35	89					0	0	0.005524	0	0
PTPRD	5789	broad.mit.edu	37	9	8636727	8636727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:8636727C>T	uc003zkk.2	-	12	893	c.182G>A	c.(181-183)GGA>GAA	p.G61E	PTPRD_uc003zkp.2_Missense_Mutation_p.G61E|PTPRD_uc003zkq.2_Missense_Mutation_p.G61E|PTPRD_uc003zkr.2_Missense_Mutation_p.G61E|PTPRD_uc003zks.2_Missense_Mutation_p.G61E|PTPRD_uc003zkl.2_Missense_Mutation_p.G61E|PTPRD_uc003zkm.2_Missense_Mutation_p.G61E|PTPRD_uc003zkn.2_Missense_Mutation_p.G61E|PTPRD_uc003zko.2_Missense_Mutation_p.G61E|PTPRD_uc003zkt.1_Missense_Mutation_p.G61E	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	61	Ig-like C2-type 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GACTTTCTTTCCTTTTTTGTT	0.458										TSP Lung(15;0.13)			25	57					0	0	0.004656	0	0
FREM1	158326	broad.mit.edu	37	9	14819310	14819310	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:14819310C>T	uc003zlm.2	-	14	3058	c.2468G>A	c.(2467-2469)GGA>GAA	p.G823E	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	823	CSPG 5.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CTCCACCCTTCCGTGCAGAGG	0.453													16	30					0	0	0.008871	0	0
KIAA1797	54914	broad.mit.edu	37	9	20990162	20990162	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:20990162T>C	uc003zog.1	+	44	5408	c.5045T>C	c.(5044-5046)GTT>GCT	p.V1682A	KIAA1797_uc003zoh.1_Missense_Mutation_p.V1118A	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	1682						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		ACCGCAGTGGTTGCATGGGCT	0.493													29	53					0	0	0.001786	0	0
IFNB1	3456	broad.mit.edu	37	9	21077397	21077397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:21077397C>T	uc003zok.2	-	1	547	c.472G>A	c.(472-474)GAG>AAG	p.E158K		NM_002176	NP_002167	P01574	IFNB_HUMAN	interferon, beta 1, fibroblast precursor	158					activation of caspase activity|B cell proliferation|blood coagulation|cellular response to exogenous dsRNA|defense response to virus|induction of apoptosis|natural killer cell activation|negative regulation of cell proliferation|negative regulation of T cell differentiation|negative regulation of T-helper 2 cell cytokine production|negative regulation of viral genome replication|negative regulation of viral transcription|negative regulation of virion penetration into host cell|positive regulation of innate immune response|positive regulation of transcription from RNA polymerase II promoter|regulation of MHC class I biosynthetic process|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding|transcription corepressor activity			ovary(1)|breast(1)|kidney(1)	3				GBM - Glioblastoma multiforme(5;7.45e-142)|Lung(24;2.42e-17)|LUSC - Lung squamous cell carcinoma(38;7.17e-11)	Interferon beta-1a(DB00060)|Interferon beta-1b(DB00068)	TGACTGTACTCCTTGGCCTTC	0.433													48	113					0	0	0.003610	0	0
DDX58	23586	broad.mit.edu	37	9	32500845	32500845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:32500845C>T	uc003zra.2	-	2	357	c.199G>A	c.(199-201)GAA>AAA	p.E67K	DDX58_uc010mjj.2_RNA|DDX58_uc010mjk.1_Intron|DDX58_uc011lnr.1_5'UTR|DDX58_uc010mji.2_5'UTR	NM_014314	NP_055129	O95786	DDX58_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	67	CARD 1.				detection of virus|innate immune response|negative regulation of type I interferon production|positive regulation of defense response to virus by host|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter	cytosol	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|protein binding|zinc ion binding			ovary(2)|liver(1)|pancreas(1)	4			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;0.00056)		AACCAGCCTTCCTCCTGGAGC	0.448													35	49					0	0	0.003271	0	0
TAF1L	138474	broad.mit.edu	37	9	32635109	32635109	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:32635109G>A	uc003zrg.1	-	1	559	c.469C>T	c.(469-471)CCT>TCT	p.P157S	uc003zrh.1_Intron	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	157	Pro-rich.				male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GGAGGTGGAGGAGGCATCAAC	0.488													18	57					0	0	0.006122	0	0
DCTN3	11258	broad.mit.edu	37	9	34616097	34616097	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:34616097G>A	uc003zux.1	-	4	317	c.282C>T	c.(280-282)ATC>ATT	p.I94I	DCTN3_uc003zuw.1_Silent_p.I94I	NM_007234	NP_009165	O75935	DCTN3_HUMAN	dynactin 3 isoform 1	94					cytokinesis|G2/M transition of mitotic cell cycle|mitosis	centrosome|cleavage furrow|condensed chromosome kinetochore|cytosol|dynactin complex|midbody|perinuclear region of cytoplasm|spindle	protein binding|structural molecule activity				0	all_epithelial(49;0.0863)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.0388)		CCTGGGAAAGGATAAACTGCT	0.498													11	27					0	0	0.000978	0	0
GALT	2592	broad.mit.edu	37	9	34647892	34647892	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:34647892C>T	uc003zve.2	+	5	508	c.441C>T	c.(439-441)ATC>ATT	p.I147I	GALT_uc003zvf.2_Silent_p.I38I|GALT_uc003zvg.2_Silent_p.I19I|GALT_uc003zvh.2_Silent_p.I99I|GALT_uc011lop.1_Silent_p.I99I|IL11RA_uc003zvi.2_5'Flank	NM_000155	NP_000146	P07902	GALT_HUMAN	galactose-1-phosphate uridylyltransferase	147					galactose catabolic process	cytosol	UDP-glucose:hexose-1-phosphate uridylyltransferase activity|zinc ion binding				0	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.173)		TCCCTGAGATCCGGGCTGTTG	0.592									Galactosemia				26	53					0	0	0.004656	0	0
MAMDC2	256691	broad.mit.edu	37	9	72758574	72758574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:72758574C>T	uc004ahm.2	+	9	1860	c.1243C>T	c.(1243-1245)CAT>TAT	p.H415Y	MAMDC2_uc004ahn.2_RNA	NM_153267	NP_694999	Q7Z304	MAMC2_HUMAN	MAM domain containing 2 precursor	415	MAM 3.					endoplasmic reticulum|membrane				central_nervous_system(1)|pancreas(1)	2						TCTGCGTTTTCATTATGCCAT	0.438													22	38					0	0	0.002780	0	0
TRPM6	140803	broad.mit.edu	37	9	77365608	77365608	+	Silent	SNP	T	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:77365608T>G	uc004ajl.1	-	30	5267	c.5029A>C	c.(5029-5031)AGG>CGG	p.R1677R	TRPM6_uc004ajk.1_Silent_p.R1672R|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Silent_p.R628R|TRPM6_uc010mpd.1_Silent_p.R510R|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Silent_p.R633R	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1677	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TTGGTGCTCCTGGAATTCCAC	0.418													21	32					0	0	0.002299	0	0
TRPM6	140803	broad.mit.edu	37	9	77397640	77397640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:77397640G>A	uc004ajl.1	-	22	3287	c.3049C>T	c.(3049-3051)CCA>TCA	p.P1017S	TRPM6_uc004ajk.1_Missense_Mutation_p.P1012S|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Missense_Mutation_p.P303S	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1017					response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						ATCCAGTATGGCTCAAATACA	0.458													27	34					0	0	0.005443	0	0
PSAT1	29968	broad.mit.edu	37	9	80923395	80923395	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:80923395C>T	uc004ala.2	+	6	704	c.636C>T	c.(634-636)GTC>GTT	p.V212V	PSAT1_uc004alb.2_Silent_p.V212V	NM_058179	NP_478059	Q9Y617	SERC_HUMAN	phosphoserine aminotransferase 1 isoform 1	212					L-serine biosynthetic process|pyridoxine biosynthetic process		O-phospho-L-serine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)	TGGTGATTGTCCGTGATGACC	0.517													26	24					0	0	0.001786	0	0
NTRK2	4915	broad.mit.edu	37	9	87482207	87482207	+	Silent	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:87482207T>C	uc004aoa.1	+	15	2384	c.1446T>C	c.(1444-1446)CAT>CAC	p.H482H	NTRK2_uc004any.1_Silent_p.H482H|NTRK2_uc004anz.1_Silent_p.H498H|NTRK2_uc011lsz.1_Silent_p.H498H|NTRK2_uc011lta.1_Silent_p.H482H|NTRK2_uc004aoc.2_Silent_p.H33H	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	482	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						GCCCACTCCATCACATCTCCA	0.428										TSP Lung(25;0.17)			23	27					0	0	0.006320	0	0
CTSL2	1515	broad.mit.edu	37	9	99798970	99798970	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:99798970G>A	uc004awt.2	-	5	653	c.456C>T	c.(454-456)TTC>TTT	p.F152F	CTSL2_uc010msi.2_Silent_p.F152F|CTSL2_uc004awu.2_Silent_p.F97F|CTSL2_uc010msj.1_Silent_p.F97F|CTSL2_uc010msk.2_Silent_p.F97F	NM_001333	NP_001324	O60911	CATL2_HUMAN	cathepsin L2 preproprotein	152						lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(62;0.0559)				CAGTTTTCCGGAACATCTGTC	0.473													20	37					0	0	0.001523	0	0
GALNT12	79695	broad.mit.edu	37	9	101585540	101585540	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:101585540G>A	uc004ayz.2	+	2	374	c.374G>A	c.(373-375)TGC>TAC	p.C125Y		NM_024642	NP_078918	Q8IXK2	GLT12_HUMAN	N-acetylgalactosaminyltransferase 12	125	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(1)|ovary(1)	2		Acute lymphoblastic leukemia(62;0.0559)				ATTTGCAGGTGCAAAGAGAAG	0.463													24	20					0	0	0.008361	0	0
BAAT	570	broad.mit.edu	37	9	104125033	104125033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:104125033G>A	uc010mtd.2	-	4	1043	c.934C>T	c.(934-936)CCT>TCT	p.P312S	BAAT_uc004bbd.3_Missense_Mutation_p.P312S	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	312					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	TCTTCAATAGGAAACAAATAT	0.453													40	39					0	0	0.002522	0	0
BAAT	570	broad.mit.edu	37	9	104133228	104133228	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:104133228G>A	uc010mtd.2	-	2	568	c.459C>T	c.(457-459)CTC>CTT	p.L153L	BAAT_uc004bbd.3_Silent_p.L153L	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	153					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	CACCTGGAGGGAGAAAGAGAG	0.438													31	36					0	0	0.003271	0	0
OR13C3	138803	broad.mit.edu	37	9	107298193	107298193	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:107298193T>A	uc004bcb.1	-	1	902	c.902A>T	c.(901-903)GAA>GTA	p.E301V		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	301	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						TTGCAATTTTTCTTCCCCAAT	0.403													40	22					0	0	0.006999	0	0
OR13C9	286362	broad.mit.edu	37	9	107379931	107379931	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:107379931C>T	uc011lvr.1	-	1	555	c.555G>A	c.(553-555)ATG>ATA	p.M185I		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGGCCAACTTCATGACAGCTA	0.408													21	21					0	0	0.001523	0	0
C9orf5	23731	broad.mit.edu	37	9	111812952	111812952	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:111812952G>A	uc004bdt.3	-	13	1907	c.1875C>T	c.(1873-1875)ATC>ATT	p.I625I	C9orf5_uc004bds.3_RNA|C9orf5_uc004bdr.3_Silent_p.I617I	NM_032012	NP_114401	Q9H330	CI005_HUMAN	hypothetical protein LOC23731	625						integral to membrane				central_nervous_system(1)	1		Myeloproliferative disorder(63;0.204)		OV - Ovarian serous cystadenocarcinoma(323;3.08e-05)|STAD - Stomach adenocarcinoma(157;0.0823)		GGCTCATAACGATCCACAGAG	0.458													13	16					0	0	0.003163	0	0
SVEP1	79987	broad.mit.edu	37	9	113169251	113169251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:113169251C>T	uc010mtz.2	-	38	8966	c.8629G>A	c.(8629-8631)GGA>AGA	p.G2877R	SVEP1_uc010mty.2_Missense_Mutation_p.G803R	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2877	Sushi 24.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CTCCAACTTCCATTGGCAAGA	0.537													19	22					0	0	0.007413	0	0
SVEP1	79987	broad.mit.edu	37	9	113312281	113312281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:113312281C>T	uc010mtz.2	-	2	972	c.635G>A	c.(634-636)CGA>CAA	p.R212Q	SVEP1_uc010mua.1_Missense_Mutation_p.R212Q|SVEP1_uc004beu.2_Missense_Mutation_p.R212Q|SVEP1_uc004bev.2_5'UTR	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	212	VWFA.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TCCTGAATCTCGCAGTGACGC	0.458													42	34					0	0	0.007835	0	0
MUSK	4593	broad.mit.edu	37	9	113444971	113444971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:113444971C>T	uc004bey.2	+	2	195	c.97C>T	c.(97-99)CCT>TCT	p.P33S	MUSK_uc004bex.2_Missense_Mutation_p.P33S	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	33	Ig-like 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						CATCACCACTCCTCTTGAAAC	0.413													47	60					0	0	0.003610	0	0
SUSD1	64420	broad.mit.edu	37	9	114886619	114886619	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:114886619C>T	uc004bfu.2	-	6	845	c.804G>A	c.(802-804)GAG>GAA	p.E268E	SUSD1_uc010mui.2_Silent_p.E268E|SUSD1_uc010muj.2_Silent_p.E268E	NM_022486	NP_071931	Q6UWL2	SUSD1_HUMAN	sushi domain containing 1 precursor	268	Sushi 2.|Extracellular (Potential).					integral to membrane	calcium ion binding				0						TCTCAAAGCCCTCTTGACAGA	0.517													47	37					0	0	0.003610	0	0
ZNF883	169834	broad.mit.edu	37	9	115760332	115760332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:115760332C>T	uc011lwy.1	-	5	1447	c.208G>A	c.(208-210)GAA>AAA	p.E70K		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	70	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCATTACATTCATAAGGTTTC	0.358													13	13					0	0	0.001368	0	0
AKNA	80709	broad.mit.edu	37	9	117109058	117109058	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:117109058G>A	uc004biq.3	-	16	3540	c.3405C>T	c.(3403-3405)TCC>TCT	p.S1135S	AKNA_uc004bin.3_Silent_p.S382S|AKNA_uc004bio.3_Silent_p.S595S|AKNA_uc004bip.3_Silent_p.S1054S|AKNA_uc004bir.3_Silent_p.S1135S|AKNA_uc004bis.3_Silent_p.S1135S|AKNA_uc010mve.2_Silent_p.S1016S	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	1135					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						ATCTCTCTGTGGATTTACTAG	0.493													17	12					0	0	0.006122	0	0
ASTN2	23245	broad.mit.edu	37	9	119202920	119202920	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:119202920G>A	uc004bjs.1	-	22	3851	c.3750C>T	c.(3748-3750)TTC>TTT	p.F1250F	ASTN2_uc004bjr.1_Silent_p.F1246F|ASTN2_uc004bjt.1_Silent_p.F1199F|ASTN2_uc004bjp.1_Silent_p.F343F|ASTN2_uc004bjq.1_Silent_p.F302F|ASTN2_uc011lxr.1_Silent_p.F302F|ASTN2_uc011lxs.1_Silent_p.F302F|ASTN2_uc011lxt.1_Silent_p.F302F|ASTN2_uc004bjo.1_Silent_p.F31F	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	1250	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						TTCTCCAGACGAAGTCGCCAA	0.512													19	29					0	0	0.001523	0	0
ASTN2	23245	broad.mit.edu	37	9	119202937	119202937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:119202937C>T	uc004bjs.1	-	22	3834	c.3733G>A	c.(3733-3735)GAA>AAA	p.E1245K	ASTN2_uc004bjr.1_Missense_Mutation_p.E1241K|ASTN2_uc004bjt.1_Missense_Mutation_p.E1194K|ASTN2_uc004bjp.1_Missense_Mutation_p.E338K|ASTN2_uc004bjq.1_Missense_Mutation_p.E297K|ASTN2_uc011lxr.1_Missense_Mutation_p.E297K|ASTN2_uc011lxs.1_Missense_Mutation_p.E297K|ASTN2_uc011lxt.1_Missense_Mutation_p.E297K|ASTN2_uc004bjo.1_Missense_Mutation_p.E26K	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	1245	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CCAAACTTTTCATAGTGAGAG	0.512													22	31					0	0	0.002780	0	0
CEP110	11064	broad.mit.edu	37	9	123919771	123919771	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:123919771C>T	uc004bkx.1	+	26	4420	c.4389C>T	c.(4387-4389)TTC>TTT	p.F1463F	CEP110_uc004bla.1_Silent_p.F911F|CEP110_uc010mvo.1_Silent_p.F132F|CEP110_uc004blb.1_Silent_p.F132F|CEP110_uc010mvp.1_5'UTR	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	1463	Potential.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						TTGAAAAGTTCACTGATGCCA	0.403													12	18					0	0	0.001855	0	0
OR1J2	26740	broad.mit.edu	37	9	125273173	125273173	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:125273173C>T	uc004bmj.1	+	4	948	c.93C>T	c.(91-93)TTC>TTT	p.F31F	OR1J2_uc011lyv.1_Silent_p.F31F	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						TCACCCTGTTCCTGGGCATGT	0.587													64	51					0	0	0.003610	0	0
OR1N2	138882	broad.mit.edu	37	9	125316096	125316096	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:125316096C>T	uc011lyx.1	+	1	648	c.648C>T	c.(646-648)ATC>ATT	p.I216I		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						AGCTGATGATCATCACCATGG	0.502													37	54					0	0	0.008740	0	0
LMX1B	4010	broad.mit.edu	37	9	129453146	129453146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:129453146G>A	uc004bqj.2	+	3	339	c.289G>A	c.(289-291)GAG>AAG	p.E97K	LMX1B_uc004bqi.2_Missense_Mutation_p.E97K|LMX1B_uc011maa.1_Missense_Mutation_p.E97K	NM_002316	NP_002307	O60663	LMX1B_HUMAN	LIM homeobox transcription factor 1, beta	97	LIM zinc-binding 2.				dorsal/ventral pattern formation|in utero embryonic development	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CGGCTGCATGGAGAAGATCGC	0.657									Nail-Patella_Syndrome				4	6					0	0	0.000602	0	0
WDR34	89891	broad.mit.edu	37	9	131418973	131418973	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:131418973G>A	uc004bvq.1	-	1	157	c.33C>T	c.(31-33)AGC>AGT	p.S11S	WDR34_uc004bvs.1_Silent_p.S11S|WDR34_uc004bvr.1_Silent_p.S11S	NM_052844	NP_443076	Q96EX3	WDR34_HUMAN	WD repeat domain 34	11						cytoplasm				central_nervous_system(2)|skin(1)	3						TTCCCGCCTGGCTGAGTGGCC	0.617													5	3					0	0	0.001984	0	0
SETX	23064	broad.mit.edu	37	9	135224736	135224736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:135224736G>A	uc004cbk.2	-	3	263	c.80C>T	c.(79-81)TCC>TTC	p.S27F		NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	27					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		AAATTCACCGGACGGAGTGTT	0.488													28	15					0	0	0.004656	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136307760	136307760	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:136307760C>T	uc004cdv.3	+	18	2574	c.2130C>T	c.(2128-2130)TGC>TGT	p.C710C	ADAMTS13_uc004cdp.3_Intron|ADAMTS13_uc004cdt.1_Silent_p.C710C|ADAMTS13_uc004cdu.1_Silent_p.C679C|ADAMTS13_uc004cdw.3_Silent_p.C710C|ADAMTS13_uc004cdx.3_Silent_p.C679C|ADAMTS13_uc004cdy.1_Intron|ADAMTS13_uc004cdz.3_Silent_p.C380C|ADAMTS13_uc004cds.1_Silent_p.C235C|ADAMTS13_uc004cdr.1_Intron	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	710	TSP type-1 2.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		ACTACAGCTGCCTGGACCAGG	0.672													28	17					0	0	0.006320	0	0
KCNT1	57582	broad.mit.edu	37	9	138651645	138651645	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:138651645G>A	uc011mdq.1	+	11	1049	c.975G>A	c.(973-975)TGG>TGA	p.W325*	KCNT1_uc011mdr.1_Nonsense_Mutation_p.W152*|KCNT1_uc010nbf.2_Nonsense_Mutation_p.W280*|KCNT1_uc004cgo.1_Nonsense_Mutation_p.W74*	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	325						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		CCAAGATCTGGCCATCGCAGC	0.637													18	17					0	0	0.006122	0	0
FUT7	2529	broad.mit.edu	37	9	139925167	139925167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:139925167C>T	uc004ckq.2	-	2	1873	c.1024G>A	c.(1024-1026)GCC>ACC	p.A342T	ABCA2_uc011mel.1_5'Flank|ABCA2_uc011mem.1_5'Flank|ABCA2_uc004ckl.1_5'Flank|ABCA2_uc004ckm.1_5'Flank|C9orf139_uc004ckp.1_Intron	NM_004479	NP_004470	Q11130	FUT7_HUMAN	fucosyltransferase 7	342	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity				0	all_cancers(76;0.0893)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.96e-05)|Epithelial(140;0.000486)		GGATCTCAGGCCTGAAACCAA	0.617													8	10					0	0	0.006214	0	0
NDOR1	27158	broad.mit.edu	37	9	140108686	140108686	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:140108686C>T	uc004clw.2	+	6	654	c.543C>T	c.(541-543)CTC>CTT	p.L181L	NDOR1_uc004clx.2_Silent_p.L181L|NDOR1_uc011mes.1_Silent_p.L181L|NDOR1_uc004cly.2_Silent_p.L147L	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	181					cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		TGCTGTTCCTCCAAGAGGCAC	0.682													13	7					0	0	0.002450	0	0
CACNA1B	774	broad.mit.edu	37	9	140809221	140809221	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr9:140809221G>A	uc004cog.2	+	5	883	c.738G>A	c.(736-738)ATG>ATA	p.M246I		NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	246	I.|Extracellular (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	AGTTCTACATGGGCAAGTTCC	0.552													10	8					0	0	0.000978	0	0
CSF2RA	1438	broad.mit.edu	37	X	1424365	1424365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:1424365C>T	uc010nct.2	+	13	1392	c.1070C>T	c.(1069-1071)CCG>CTG	p.P357L	CSF2RA_uc011mhb.1_Missense_Mutation_p.P357L|CSF2RA_uc004cpq.2_Missense_Mutation_p.R225C|CSF2RA_uc004cpn.2_Missense_Mutation_p.P357L|CSF2RA_uc004cpo.2_Missense_Mutation_p.P357L|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Missense_Mutation_p.P224L|CSF2RA_uc004cpp.2_Intron|CSF2RA_uc010ncv.2_Missense_Mutation_p.P391L|CSF2RA_uc004cpr.2_Missense_Mutation_p.R325C	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	357	Cytoplasmic (Potential).|Box 1 motif.					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	CGGCTGTTCCCGCCAGTTCCA	0.547													41	66					0	0	0.003610	0	0
P2RY8	286530	broad.mit.edu	37	X	1585282	1585282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:1585282G>A	uc004cpz.2	-	2	418	c.170C>T	c.(169-171)CCG>CTG	p.P57L		NM_178129	NP_835230	Q86VZ1	P2RY8_HUMAN	G-protein coupled purinergic receptor P2Y8	57	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(5)	5		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GATGACCGACGGGGATCTGGG	0.622			T	CRLF2	B-ALL|Downs associated ALL								24	37					0	0	0.003330	0	0
ARSE	415	broad.mit.edu	37	X	2878427	2878427	+	Silent	SNP	G	A	A	rs146870341		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:2878427G>A	uc004crc.3	-	2	265	c.15C>T	c.(13-15)CAC>CAT	p.H5H	ARSE_uc011mhi.1_Silent_p.H5H|ARSE_uc011mhh.1_5'UTR	NM_000047	NP_000038	P51690	ARSE_HUMAN	arylsulfatase E precursor	5					skeletal system development	Golgi stack	arylsulfatase activity|metal ion binding			ovary(1)|central_nervous_system(1)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				ACCAAGAATGGTGCAGATGTA	0.249													17	15					0	0	0.008871	0	0
ARSF	416	broad.mit.edu	37	X	3028241	3028241	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:3028241C>T	uc004cre.1	+	10	1559	c.1338C>T	c.(1336-1338)TTC>TTT	p.F446F	ARSF_uc004crf.1_Silent_p.F446F	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	446						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				AATTTCTTTTCCACTACTGTG	0.582													35	20					0	0	0.004289	0	0
MXRA5	25878	broad.mit.edu	37	X	3239636	3239636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:3239636C>T	uc004crg.3	-	5	4247	c.4090G>A	c.(4090-4092)GAA>AAA	p.E1364K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1364						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCCTTAAATTCTCCCATAGTG	0.468													13	5					0	0	0.002450	0	0
NLGN4X	57502	broad.mit.edu	37	X	6069442	6069442	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:6069442G>A	uc010ndh.2	-	2	567	c.66C>T	c.(64-66)AAC>AAT	p.N22N	NLGN4X_uc004crp.2_Silent_p.N22N|NLGN4X_uc004crq.2_Silent_p.N22N|NLGN4X_uc010ndi.2_Silent_p.N22N|NLGN4X_uc004crr.2_Silent_p.N22N|NLGN4X_uc010ndj.2_Silent_p.N22N	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	22					brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						GGACATTGGAGTTTAACATGA	0.493													18	21					0	0	0.007413	0	0
TLR7	51284	broad.mit.edu	37	X	12903932	12903932	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:12903932C>G	uc004cvc.2	+	3	444	c.305C>G	c.(304-306)CCT>CGT	p.P102R		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	102	Extracellular (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	AACTGTGTACCTATTCCACTG	0.448													6	77					0	0	0.001168	0	0
TLR8	51311	broad.mit.edu	37	X	12939092	12939092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:12939092G>A	uc004cve.2	+	2	2001	c.1933G>A	c.(1933-1935)GAT>AAT	p.D645N	TLR8_uc004cvd.2_Missense_Mutation_p.D663N	NM_138636	NP_619542	Q9NR97	TLR8_HUMAN	toll-like receptor 8 precursor	645	Extracellular (Potential).|LRR 19.				cellular response to mechanical stimulus|defense response to virus|I-kappaB kinase/NF-kappaB cascade|immunoglobulin mediated immune response|inflammatory response|innate immune response|positive regulation of innate immune response|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process	endosome membrane	DNA binding|double-stranded RNA binding|single-stranded RNA binding|transmembrane receptor activity			ovary(4)|lung(2)|large_intestine(1)	7						GACACGTCTGGATTTATCCCT	0.368													24	14					0	0	0.003954	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29973485	29973485	+	Silent	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:29973485T>C	uc004dby.2	+	11	2147	c.1639T>C	c.(1639-1641)TTG>CTG	p.L547L		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	547	Cytoplasmic (Potential).|TIR.				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						ATGCAACAAGTTGAACTCCAA	0.453													8	11					0	0	0.006214	0	0
FAM47A	158724	broad.mit.edu	37	X	34148365	34148365	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:34148365C>T	uc004ddg.2	-	1	2064	c.2031G>A	c.(2029-2031)AGG>AGA	p.R677R		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	677										ovary(4)|central_nervous_system(1)	5						TGTGGAATTTCCTGCCCCAGT	0.433													27	18					0	0	0.005443	0	0
FAM47B	170062	broad.mit.edu	37	X	34961419	34961419	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:34961419G>A	uc004ddi.1	+	1	489	c.471G>A	c.(469-471)AGG>AGA	p.R157R		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	157										ovary(3)|breast(1)	4						ATCCCGAGAGGAAGCTGGAGG	0.572													18	10					0	0	0.006122	0	0
ZNF182	7569	broad.mit.edu	37	X	47836115	47836115	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:47836115G>A	uc004dir.2	-	7	1717	c.1371C>T	c.(1369-1371)CCC>CCT	p.P457P	ZNF182_uc004dis.2_Silent_p.P438P|ZNF182_uc004dit.2_Silent_p.P457P|ZNF182_uc011mlu.1_Silent_p.P437P	NM_006962	NP_008893	P17025	ZN182_HUMAN	zinc finger protein 21 isoform 1	457					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3						TACATTCAAAGGGTTTCTCTC	0.423													26	12					0	0	0.006320	0	0
CACNA1F	778	broad.mit.edu	37	X	49081361	49081361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:49081361G>A	uc004dnb.2	-	14	1834	c.1772C>T	c.(1771-1773)TCC>TTC	p.S591F	CACNA1F_uc010nip.2_Missense_Mutation_p.S580F	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	591	Cytoplasmic (Potential).|II.				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	GTTGAAGAAGGAAGACACATA	0.552													3	1					0	0	0.000248	0	0
CCNB3	85417	broad.mit.edu	37	X	50052110	50052110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:50052110C>T	uc004dox.3	+	6	1239	c.941C>T	c.(940-942)TCC>TTC	p.S314F	CCNB3_uc004doy.2_Missense_Mutation_p.S314F|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	314					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					GGAGCAATGTCCTCCATTAAG	0.413													51	27					0	0	0.003610	0	0
HUWE1	10075	broad.mit.edu	37	X	53616539	53616539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:53616539G>A	uc004dsp.2	-	36	4831	c.4429C>T	c.(4429-4431)CGT>TGT	p.R1477C	HUWE1_uc004dsn.2_Missense_Mutation_p.R302C	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1477					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						ATCATGTCACGATAATCTGCT	0.483													58	42					0	0	0.003610	0	0
TSIX	9383	broad.mit.edu	37	X	73040479	73040479	+	RNA	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:73040479C>T	uc004ebn.2	+	1		c.28440C>T				NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						ATTGTCACATCAAAATACAAA	0.269													7	2					0	0	0.003080	0	0
MAGEE1	57692	broad.mit.edu	37	X	75649204	75649205	+	Missense_Mutation	DNP	CC	TG	TG			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:75649204_75649205CC>TG	uc004ecm.1	+	1	1088_1089	c.881_882CC>TG	c.(880-882)ACC>ATG	p.T294M		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	294	Pro-rich.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						GGATCAAGCACCTCCGTGCCCC	0.708													6	6					0	0	0.004672	0	0
P2RY10	27334	broad.mit.edu	37	X	78217006	78217006	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:78217006G>A	uc004ede.2	+	4	1358	c.989G>A	c.(988-990)AGC>AAC	p.S330N	P2RY10_uc004edf.2_Missense_Mutation_p.S330N	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	330	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						CGCCTCATGAGCAAGGAGAGT	0.428													41	18					0	0	0.003610	0	0
POF1B	79983	broad.mit.edu	37	X	84562249	84562249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:84562249C>T	uc004eer.2	-	11	1230	c.1084G>A	c.(1084-1086)GAT>AAT	p.D362N	POF1B_uc004ees.2_Missense_Mutation_p.D362N	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	362	Potential.						actin binding				0						AATGATAAATCTTTCTCAAGT	0.328													12	8					0	0	0.000978	0	0
PCDH11X	27328	broad.mit.edu	37	X	91132994	91132994	+	Silent	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:91132994G>A	uc004efk.1	+	2	2600	c.1755G>A	c.(1753-1755)AGG>AGA	p.R585R	PCDH11X_uc004efl.1_Silent_p.R585R|PCDH11X_uc004efo.1_Silent_p.R585R|PCDH11X_uc010nmv.1_Silent_p.R585R|PCDH11X_uc004efm.1_Silent_p.R585R|PCDH11X_uc004efn.1_Silent_p.R585R|PCDH11X_uc004efh.1_Silent_p.R585R|PCDH11X_uc004efj.1_Silent_p.R585R	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	585	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						ACCTTCCAAGGCATGGTACAG	0.393													27	7					0	0	0.002096	0	0
PCDH19	57526	broad.mit.edu	37	X	99657804	99657804	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:99657804C>A	uc010nmz.2	-	3	4010	c.2334G>T	c.(2332-2334)AAG>AAT	p.K778N	PCDH19_uc004efw.3_Missense_Mutation_p.K731N|PCDH19_uc004efx.3_Missense_Mutation_p.K731N	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	778	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						TGATTTTTTTCTTCTTGCTTG	0.463													11	7					0.00010058	0.000112372	0.001368	1	0
RAB40AL	282808	broad.mit.edu	37	X	102193023	102193023	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:102193023C>T	uc004ejs.2	+	1	824	c.777C>T	c.(775-777)ATC>ATT	p.I259I		NM_001031834	NP_001027004	P0C0E4	RB40L_HUMAN	RAB40A, member RAS oncogene family-like	259					protein transport|small GTPase mediated signal transduction	mitochondrion|plasma membrane	GTP binding			ovary(2)	2						AAGTGAAGATCGTCTGCCCAC	0.537													39	18					0	0	0.004878	0	0
RGAG1	57529	broad.mit.edu	37	X	109694786	109694786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:109694786C>T	uc004eor.1	+	3	1187	c.941C>T	c.(940-942)TCT>TTT	p.S314F	RGAG1_uc011msr.1_Missense_Mutation_p.S314F	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	314										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						TTAATGTCATCTCCAGGCTCT	0.493													102	47					0	0	0.003610	0	0
TDGF3	6998	broad.mit.edu	37	X	109764926	109764926	+	RNA	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:109764926C>T	uc004eos.1	+	1		c.1387C>T				NR_002718				Human (clone CR-3) teratocarcinoma-derived growth factor 3 (TDGF3) mRNA, complete cds.												0						TACTATTAATCGACATTGACC	0.408													19	4					0	0	0.001523	0	0
HTR2C	3358	broad.mit.edu	37	X	114141517	114141517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:114141517G>A	uc004epu.1	+	6	1644	c.916G>A	c.(916-918)GAA>AAA	p.E306K	HTR2C_uc010nqc.1_Missense_Mutation_p.E306K|HTR2C_uc004epv.1_3'UTR	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	306	Cytoplasmic (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	TATCAACAATGAAAGAAAAGC	0.443													40	32					0	0	0.006999	0	0
KLHL13	90293	broad.mit.edu	37	X	117053560	117053560	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:117053560T>C	uc004eql.2	-	4	556	c.494A>G	c.(493-495)CAA>CGA	p.Q165R	KLHL13_uc004eqk.2_Missense_Mutation_p.Q114R|KLHL13_uc011mtn.1_Missense_Mutation_p.Q5R|KLHL13_uc011mto.1_Missense_Mutation_p.Q159R|KLHL13_uc011mtp.1_Missense_Mutation_p.Q167R|KLHL13_uc004eqm.2_Missense_Mutation_p.Q114R|KLHL13_uc011mtq.1_Missense_Mutation_p.Q149R	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	165					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						CAGCGTGTCTTGAAGGTTGTC	0.363													43	15					0	0	0.008740	0	0
SEPT6	23157	broad.mit.edu	37	X	118786936	118786936	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:118786936G>A	uc004erv.2	-	4	674	c.409C>T	c.(409-411)CGA>TGA	p.R137*	SEPT6_uc010nqk.2_RNA|SEPT6_uc004ers.2_Nonsense_Mutation_p.R137*|SEPT6_uc004ert.2_Nonsense_Mutation_p.R137*|SEPT6_uc004eru.2_Nonsense_Mutation_p.R137*|SEPT6_uc004erw.2_Nonsense_Mutation_p.R79*|SEPT6_uc011mtv.1_Nonsense_Mutation_p.R79*|SEPT6_uc011mtw.1_Nonsense_Mutation_p.R167*	NM_015129	NP_055944	Q14141	SEPT6_HUMAN	septin 6 isoform B	137					cell cycle|cytokinesis|interspecies interaction between organisms	cleavage furrow|condensed chromosome kinetochore|midbody|septin complex|spindle	GTP binding|protein binding			lung(1)|ovary(1)|prostate(1)|kidney(1)	4						AGCACTCTTCGGATCTTTAGC	0.512													27	14					0	0	0.001786	0	0
ODZ1	10178	broad.mit.edu	37	X	123514521	123514521	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:123514521C>T	uc004euj.2	-	31	8107	c.8043G>A	c.(8041-8043)AAG>AAA	p.K2681K	ODZ1_uc011muj.1_Silent_p.K2687K|ODZ1_uc010nqy.2_Silent_p.K2688K	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2681	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding	p.G2681E(1)		ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AAAGCTGCTGCTTTTCCCCTT	0.498													71	33					0	0	0.003610	0	0
CD40LG	959	broad.mit.edu	37	X	135730413	135730413	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:135730413C>T	uc004faa.2	+	1	78	c.6C>T	c.(4-6)ATC>ATT	p.I2I	CD40LG_uc010nsd.2_Silent_p.I2I|CD40LG_uc010nse.1_5'Flank	NM_000074	NP_000065	P29965	CD40L_HUMAN	CD40 ligand	2	Cytoplasmic (Potential).				anti-apoptosis|B cell proliferation|inflammatory response|isotype switching|leukocyte cell-cell adhesion|platelet activation|positive regulation of endothelial cell apoptosis|positive regulation of interleukin-12 production	extracellular space|integral to plasma membrane|soluble fraction	CD40 receptor binding|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)				Atorvastatin(DB01076)	ACAGCATGATCGAAACATACA	0.433									Immune_Deficiency_with_Hyper-IgM				27	15					0	0	0.007291	0	0
GPR50	9248	broad.mit.edu	37	X	150349895	150349895	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:150349895G>A	uc010ntg.1	+	2	1975	c.1840G>A	c.(1840-1842)GAA>AAA	p.E614K		NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	614	Cytoplasmic (Potential).				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGATCCTGATGAAATGGCTGT	0.453													42	14					0	0	0.002222	0	0
GABRA3	2556	broad.mit.edu	37	X	151358362	151358362	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:151358362G>A	uc010ntk.1	-	9	1223	c.983C>T	c.(982-984)TCC>TTC	p.S328F		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	328					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTTAGGTAAGGAATTTCTGGC	0.458													24	13					0	0	0.006320	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900428	151900428	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:151900428G>A	uc010ntp.2	-	3	727	c.373C>T	c.(373-375)CGA>TGA	p.R125*	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Nonsense_Mutation_p.R125*|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	125	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCCCTGGCTCGATACTTGAGG	0.498													46	30					0	0	0.003610	0	0
PLXNA3	55558	broad.mit.edu	37	X	153695625	153695625	+	Silent	SNP	C	T	T			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chrX:153695625C>T	uc004flm.2	+	19	3425	c.3252C>T	c.(3250-3252)ATC>ATT	p.I1084I		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	1084	IPT/TIG 3.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCCCCGGCATCTTTCTTGGGC	0.632													42	19					0	0	0.003214	0	0
TP53	7157	broad.mit.edu	37	17	7578267	7578267	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:7578267delA	uc002gim.2	-	6	776	c.582delT	c.(580-582)CTTfs	p.L194fs	TP53_uc002gig.1_Frame_Shift_Del_p.L194fs|TP53_uc002gih.2_Frame_Shift_Del_p.L194fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Frame_Shift_Del_p.L62fs|TP53_uc010cng.1_Frame_Shift_Del_p.L62fs|TP53_uc002gii.1_Frame_Shift_Del_p.L62fs|TP53_uc010cnh.1_Frame_Shift_Del_p.L194fs|TP53_uc010cni.1_Frame_Shift_Del_p.L194fs|TP53_uc002gij.2_Frame_Shift_Del_p.L194fs|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Frame_Shift_Del_p.L101fs|TP53_uc002gio.2_Frame_Shift_Del_p.L62fs|TP53_uc010vug.1_Frame_Shift_Del_p.L155fs	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	194	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		L -> H (in sporadic cancers; somatic mutation).|L -> R (in sporadic cancers; somatic mutation).|L -> I (in sporadic cancers; somatic mutation).|L -> F (in sporadic cancers; somatic mutation).|L -> P (in sporadic cancers; somatic mutation).|L -> V (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.L194R(31)|p.L194F(16)|p.L194P(8)|p.0?(7)|p.L194H(5)|p.L194L(4)|p.A189_V197delAPPQHLIRV(4)|p.L194fs*15(2)|p.K164_P219del(1)|p.I195fs*14(1)|p.L194fs*52(1)|p.L194V(1)|p.I195fs*50(1)|p.L194fs*14(1)|p.P191fs*6(1)|p.H193_I195delHLI(1)|p.H193_I195>AP(1)|p.L194I(1)|p.I195fs*12(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CCACTCGGATAAGATGCTGAG	0.552		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			14	15	---	---	---	---					
KRTAP4-3	85290	broad.mit.edu	37	17	39324139	39324140	+	In_Frame_Ins	INS	-	GCAGCAGGTGGTCAG	GCAGCAGGTGGTCAG	rs12603046		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr17:39324139_39324140insGCAGCAGGTGGTCAG	uc010cxl.2	-	1	285_286	c.285_286insCTGACCACCTGCTGC	c.(283-288)insCTGACCACCTGCTGC	p.95_96insLTTCC		NM_033187	NP_149443	Q9BYR4	KRA43_HUMAN	keratin associated protein 4-3	95_96	29 X 5 AA repeats of C-C-[GIKRQVH]-[SPT]- [STA].|13.					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			CAGGTGGTCCTgcagcagctgg	0.297													6	12	---	---	---	---					
GNA11	2767	broad.mit.edu	37	19	3119233	3119233	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr19:3119233delC	uc002lxd.2	+	6	1007	c.765delC	c.(763-765)TTCfs	p.F255fs	uc010xhe.1_5'Flank	NM_002067	NP_002058	P29992	GNA11_HUMAN	guanine nucleotide binding protein (G protein),	255					activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation|regulation of action potential	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			eye(70)|skin(16)	86		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.79e-05)|OV - Ovarian serous cystadenocarcinoma(105;2.68e-113)|Epithelial(107;1.22e-111)|all cancers(105;5.78e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00141)|STAD - Stomach adenocarcinoma(1328;0.181)		AAGCCCTGTTCCGGACCATCA	0.612			Mis		uveal melanoma								47	74	---	---	---	---					
PLAC4	191585	broad.mit.edu	37	21	42551272	42551272	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr21:42551272delC	uc002yyz.2	-	1	5895	c.284delG	c.(283-285)GGAfs	p.G95fs	BACE2_uc002yyw.2_Intron|BACE2_uc002yyx.2_Intron|BACE2_uc002yyy.2_Intron	NM_182832	NP_878252	Q8WY50	PLAC4_HUMAN	placenta-specific 4	95											0		Prostate(19;2.29e-06)				gtgagggtatccagggtgagt	0.030													5	6	---	---	---	---					
CXCR6	10663	broad.mit.edu	37	3	45988619	45988620	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:45988619_45988620delAA	uc003cpc.1	+	2	727_728	c.646_647delAA	c.(646-648)AAAfs	p.K216fs	FYCO1_uc003cpb.3_Intron|FYCO1_uc011bal.1_Intron|CXCR6_uc010hix.1_Frame_Shift_Del_p.K216fs	NM_006564	NP_006555	O00574	CXCR6_HUMAN	G protein-coupled receptor TYMSTR	216	Cytoplasmic (Potential).				viral genome replication	integral to plasma membrane	coreceptor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		AGTCATAATCAAAACACTGCTT	0.495													38	118	---	---	---	---					
SCHIP1	29970	broad.mit.edu	37	3	159482272	159482274	+	In_Frame_Del	DEL	GCA	-	-			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr3:159482272_159482274delGCA	uc003fcs.1	+	2	170_172	c.104_106delGCA	c.(103-108)GGCAGC>GGC	p.S41del	SCHIP1_uc003fcq.1_In_Frame_Del_p.S117del|SCHIP1_uc003fcr.1_In_Frame_Del_p.S30del|SCHIP1_uc003fct.1_In_Frame_Del_p.S41del|SCHIP1_uc010hvz.1_In_Frame_Del_p.S14del	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	41	Ser-rich.					cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			AGTGACGCCGgcagcagcagcag	0.567													4	6	---	---	---	---					
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	-	-	rs111245977		TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr4:4228274_4228282delCCACAGCAG	uc003ghp.1	-	1	340_348	c.310_318delCTGCTGTGG	c.(310-318)CTGCTGTGGdel	p.LLW104del		NM_177998	NP_819056	Q7RTM1	OTOP1_HUMAN	otopetrin 1	104_106	Helical; (Potential).				biomineral tissue development	extracellular space|integral to membrane				ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		ACCACAGCATCCACAGCAGCTGCAGCAGC	0.727													8	35	---	---	---	---					
HDGFL1	154150	broad.mit.edu	37	6	22570346	22570347	+	In_Frame_Ins	INS	-	GGC	GGC			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:22570346_22570347insGGC	uc003nds.2	+	1	669_670	c.542_543insGGC	c.(541-543)AGG>AGGGCG	p.188_189insA		NM_138574	NP_612641	Q5TGJ6	HDGL1_HUMAN	hepatoma derived growth factor-like 1	188_189	Ala-rich.|Glu-rich.										0	Ovarian(93;0.163)					gaagcggagagggcggcggcgg	0.510													6	9	---	---	---	---					
SNAP91	9892	broad.mit.edu	37	6	84371317	84371324	+	Splice_Site	DEL	TCATAACC	-	-			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr6:84371317_84371324delTCATAACC	uc011dze.1	-	5	667	c.350_splice	c.e5-1	p.G117_splice	SNAP91_uc003pkb.2_Splice_Site_p.G82_splice|SNAP91_uc003pkc.2_Splice_Site_p.G117_splice|SNAP91_uc003pkd.2_Splice_Site_p.G117_splice|SNAP91_uc003pka.2_Splice_Site_p.G117_splice|SNAP91_uc011dzf.1_Splice_Site	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog						clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		GGTAGACATATCATAACCTGGGAGAGTG	0.341													9	44	---	---	---	---					
C7orf51	222950	broad.mit.edu	37	7	100084786	100084787	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:100084786_100084787insC	uc003uvd.1	+	3	570_571	c.411_412insC	c.(409-414)ACGCCCfs	p.T137fs	C7orf51_uc003uve.1_5'Flank	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	137_138										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGGCAGAGACGCCCCCCAGCAA	0.668													9	23	---	---	---	---					
RELN	5649	broad.mit.edu	37	7	103629803	103629804	+	Translation_Start_Site	INS	-	GCCGCC	GCCGCC			TCGA-EE-A2GJ-06A-11D-A196-08	TCGA-EE-A2GJ-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	8275a021-5dc0-4304-9bf5-4b1249c4aea3	4f0ad789-2e41-4c2a-bfbf-7fda1c8296f0	g.chr7:103629803_103629804insGCCGCC	uc003vca.2	-	1					RELN_uc010liz.2_Translation_Start_Site	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a						axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTGCGCTCCATgccgccgccgc	0.569													6	6	---	---	---	---					
