Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KIAA1751	85452	broad.mit.edu	37	1	1887037	1887037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:1887037C>T	uc001aim.1	-	18	2425	c.2269G>A	c.(2269-2271)GAA>AAA	p.E757K	KIAA1751_uc009vkz.1_Intron	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	757										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		TCTCTACTTTCCAGCCCTCCC	0.567													25	97					0	0	0.000227799	0	0
RERE	473	broad.mit.edu	37	1	8418778	8418778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:8418778G>A	uc001ape.2	-	21	4627	c.3817C>T	c.(3817-3819)CCC>TCC	p.P1273S	RERE_uc001apf.2_Missense_Mutation_p.P1273S|RERE_uc001apd.2_Missense_Mutation_p.P719S	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1273					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		ATGTAGAAGGGGTGGTTGCGG	0.672													6	19					0	0	0.000157383	0	0
SPSB1	80176	broad.mit.edu	37	1	9416644	9416644	+	Missense_Mutation	SNP	C	T	T	rs150195464		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:9416644C>T	uc010oae.1	+	2	1033	c.694C>T	c.(694-696)CCC>TCC	p.P232S	SPSB1_uc001apv.2_Missense_Mutation_p.P232S	NM_025106	NP_079382	Q96BD6	SPSB1_HUMAN	splA/ryanodine receptor domain and SOCS box	232	SOCS box.				intracellular signal transduction	cytoplasm					0	all_lung(157;0.194)	all_epithelial(116;4.38e-15)|all_lung(118;0.000156)|Lung NSC(185;0.000446)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;2.72e-07)|COAD - Colon adenocarcinoma(227;9.12e-05)|Kidney(185;0.000296)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00193)|BRCA - Breast invasive adenocarcinoma(304;0.00202)|READ - Rectum adenocarcinoma(331;0.0419)		CGGACTCGATCGTAAGTGTCT	0.532													12	25					0	0	0.000151284	0	0
SPEN	23013	broad.mit.edu	37	1	16258240	16258240	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:16258240C>T	uc001axk.1	+	11	5709	c.5505C>T	c.(5503-5505)ATC>ATT	p.I1835I	SPEN_uc010obp.1_Silent_p.I1794I	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	1835					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CAGTGAGTATCGTGGAGAAGC	0.483													21	39					0	0	0.000375601	0	0
CLCNKB	1188	broad.mit.edu	37	1	16374459	16374459	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:16374459G>A	uc001axw.3	+	5	498	c.418G>A	c.(418-420)GAT>AAT	p.D140N	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Missense_Mutation_p.D140N|CLCNKB_uc001axy.3_5'Flank	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1	140					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		GGACTACCTGGATATCAAGAA	0.617													9	55					0	0	6.40141e-05	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808315	18808315	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:18808315G>A	uc001bax.2	+	1	892	c.840G>A	c.(838-840)GGG>GGA	p.G280G	KLHDC7A_uc009vpg.2_Silent_p.G62G	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	280						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		AGGCGGAGGGGGTTGAGCCCC	0.597													16	52					0	0	0.00074312	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808384	18808384	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:18808384G>A	uc001bax.2	+	1	961	c.909G>A	c.(907-909)CAG>CAA	p.Q303Q	KLHDC7A_uc009vpg.2_Silent_p.Q85Q	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	303						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CCATCTTCCAGGGCAGGCTGG	0.632													13	26					0	0	0.000151284	0	0
PLA2G2D	26279	broad.mit.edu	37	1	20442014	20442014	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:20442014C>T	uc001bcz.2	-	3	295	c.278G>A	c.(277-279)GGG>GAG	p.G93E	PLA2G2D_uc009vpo.2_Intron	NM_012400	NP_036532	Q9UNK4	PA2GD_HUMAN	phospholipase A2, group IID precursor	93					inflammatory response|lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity				0		Colorectal(325;0.000147)|Renal(390;0.000469)|Lung NSC(340;0.00412)|all_lung(284;0.00419)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.000175)|GBM - Glioblastoma multiforme(114;0.000798)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GTGGATGTTCCCCTGGGAAAA	0.567										Multiple Myeloma(11;0.12)			8	20					0	0	0.000442599	0	0
UBXN10	127733	broad.mit.edu	37	1	20517071	20517071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:20517071C>T	uc001bdb.2	+	2	101	c.17C>T	c.(16-18)CCT>CTT	p.P6L		NM_152376	NP_689589	Q96LJ8	UBX10_HUMAN	UBX domain protein 10	6										ovary(1)	1						ACAGAAGCCCCTGTGAATATA	0.493													16	76					0	0	0.000175454	0	0
ASAP3	55616	broad.mit.edu	37	1	23759722	23759722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:23759722C>T	uc001bha.2	-	22	2295	c.2171G>A	c.(2170-2172)GGG>GAG	p.G724E	ASAP3_uc001bgy.1_Missense_Mutation_p.G228E|ASAP3_uc001bgz.1_RNA|ASAP3_uc010odz.1_Missense_Mutation_p.G614E|ASAP3_uc010oea.1_Missense_Mutation_p.G715E|ASAP3_uc001bhb.2_Missense_Mutation_p.G247E	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	724					regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GTCCAGCCTCCCACTGGCCCA	0.632													15	59					0	0	0.000566183	0	0
UTP11L	51118	broad.mit.edu	37	1	38484757	38484757	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:38484757C>T	uc001ccn.3	+	5	460	c.369C>T	c.(367-369)CTC>CTT	p.L123L	UTP11L_uc009vvm.2_Silent_p.L54L|UTP11L_uc010oil.1_RNA|UTP11L_uc001cco.3_Silent_p.L54L	NM_016037	NP_057121	Q9Y3A2	UTP11_HUMAN	UTP11-like, U3 small nucleolar	123					induction of apoptosis|nerve growth factor receptor signaling pathway|nervous system development|rRNA processing	cytoplasm|extracellular space|nucleolus|small-subunit processome	protein binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				AATCAGAGCTCCATCTGCTGG	0.363													14	41					0	0	0.000566183	0	0
TRIT1	54802	broad.mit.edu	37	1	40310205	40310205	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:40310205G>A	uc010oiz.1	-	9	1128	c.1114C>T	c.(1114-1116)CAG>TAG	p.Q372*	TRIT1_uc001cec.3_RNA|TRIT1_uc001ced.3_Nonsense_Mutation_p.Q68*|TRIT1_uc001cee.3_RNA|TRIT1_uc001cef.3_RNA|TRIT1_uc001ceg.3_Nonsense_Mutation_p.Q126*|TRIT1_uc001ceh.3_Nonsense_Mutation_p.Q126*|TRIT1_uc009vvv.2_Nonsense_Mutation_p.Q205*|TRIT1_uc001cei.3_Nonsense_Mutation_p.Q126*|TRIT1_uc001ceq.2_Nonsense_Mutation_p.Q68*|TRIT1_uc001cek.2_Nonsense_Mutation_p.Q68*|TRIT1_uc009vvx.2_RNA|TRIT1_uc001cel.2_Intron|TRIT1_uc001cem.2_Nonsense_Mutation_p.Q290*|TRIT1_uc001cen.2_Nonsense_Mutation_p.Q126*|TRIT1_uc001ceo.2_Nonsense_Mutation_p.Q126*|TRIT1_uc001cep.2_Nonsense_Mutation_p.Q126*	NM_017646	NP_060116	Q9H3H1	MOD5_HUMAN	tRNA isopentenyltransferase 1 precursor	372					tRNA processing	mitochondrion	ATP binding|metal ion binding|tRNA dimethylallyltransferase activity			ovary(1)	1	all_cancers(7;4.55e-14)|all_lung(5;1.23e-16)|all_epithelial(6;2.17e-16)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;3.29e-18)|Epithelial(16;3.07e-17)|all cancers(16;6.21e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			ATAATTACCTGGATGAAACTT	0.413													8	27					0	0	0.000442599	0	0
DEM1	64789	broad.mit.edu	37	1	40980715	40980715	+	Missense_Mutation	SNP	C	T	T	rs145571905	byFrequency	TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:40980715C>T	uc001cfp.2	+	3	704	c.499C>T	c.(499-501)CCA>TCA	p.P167S	DEM1_uc001cfq.2_Missense_Mutation_p.P167S|DEM1_uc001cfr.2_Missense_Mutation_p.P167S|DEM1_uc001cfs.2_Missense_Mutation_p.P167S	NM_022774	NP_073611	Q9H790	EXO5_HUMAN	defects in morphology 1 homolog	167							DNA binding|exonuclease activity				0						CAGAGAGTTTCCAGTGTTTGG	0.493													16	44					0	0	0.000132079	0	0
POMGNT1	55624	broad.mit.edu	37	1	46659580	46659580	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:46659580G>A	uc001cpe.2	-	10	1061	c.897C>T	c.(895-897)GTC>GTT	p.V299V	POMGNT1_uc010olx.1_Silent_p.V277V|POMGNT1_uc010oly.1_RNA|POMGNT1_uc010olz.1_Silent_p.V156V|POMGNT1_uc001cpg.2_Silent_p.V299V|POMGNT1_uc001cpf.2_5'UTR|POMGNT1_uc001cph.1_5'Flank|POMGNT1_uc001cpi.1_5'UTR	NM_017739	NP_060209	Q8WZA1	PMGT1_HUMAN	O-linked mannose	299	Lumenal (Potential).				protein N-linked glycosylation|protein O-linked glycosylation	Golgi membrane|integral to membrane|microsome	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GCACATTGAGGACCTTGTTGT	0.532													5	24					0	0	0.000157383	0	0
MKNK1	8569	broad.mit.edu	37	1	47027272	47027272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:47027272G>A	uc001cqb.2	-	12	1250	c.1006C>T	c.(1006-1008)CCT>TCT	p.P336S	MKNK1_uc010omd.1_Missense_Mutation_p.P200S|MKNK1_uc001cqc.2_Missense_Mutation_p.P295S|MKNK1_uc009vyi.2_Missense_Mutation_p.P295S|MKNK1_uc010ome.1_Missense_Mutation_p.P200S|MKNK1_uc009vyj.2_3'UTR	NM_003684	NP_003675	Q9BUB5	MKNK1_HUMAN	MAP kinase-interacting serine/threonine kinase 1	336	Protein kinase.				intracellular protein kinase cascade|peptidyl-serine phosphorylation|regulation of translation	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2	Acute lymphoblastic leukemia(166;0.155)					TCCTTGTCAGGAAACTCATAC	0.527													4	40					0	0	3.59834e-05	0	0
ZCCHC11	23318	broad.mit.edu	37	1	52991393	52991393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:52991393G>A	uc001ctx.2	-	2	794	c.560C>T	c.(559-561)TCC>TTC	p.S187F	ZCCHC11_uc001cty.2_Missense_Mutation_p.S187F|ZCCHC11_uc001ctz.2_Missense_Mutation_p.S187F|ZCCHC11_uc009vze.1_Missense_Mutation_p.S187F|ZCCHC11_uc009vzf.1_Intron|ZCCHC11_uc001cub.2_Missense_Mutation_p.S187F|ZCCHC11_uc001cuc.2_RNA|ZCCHC11_uc001cud.2_Missense_Mutation_p.S187F	NM_015269	NP_056084	Q5TAX3	TUT4_HUMAN	zinc finger, CCHC domain containing 11 isoform	187					miRNA catabolic process|pre-miRNA processing|RNA 3'-end processing|stem cell maintenance	cytoplasm|nucleolus	nucleic acid binding|protein binding|protein binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)|skin(1)	3						AGAAGTAAAGGAGCTTGGAAT	0.413													27	141					0	0	0.000586117	0	0
C1orf175	374977	broad.mit.edu	37	1	55167824	55167824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:55167824G>A	uc010ooe.1	+	20	3671	c.3347G>A	c.(3346-3348)CGG>CAG	p.R1116Q	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.R634Q|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.R318Q	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1116	HEAT 3.					integral to membrane	binding				0						CAGAAGCTTCGGGCACCACGC	0.617													4	12					0	0	0.000602214	0	0
C8A	731	broad.mit.edu	37	1	57347137	57347137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:57347137G>A	uc001cyo.2	+	5	616	c.484G>A	c.(484-486)GAA>AAA	p.E162K		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	162	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						CCTGACCCAGGAAGATGCTCA	0.348													13	49					0	0	0.000422831	0	0
CYP2J2	1573	broad.mit.edu	37	1	60373474	60373474	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:60373474G>A	uc001czq.2	-	6	992	c.987C>T	c.(985-987)CTC>CTT	p.L329L		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	329					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					TTTCTGGGTAGAGGGCCATAT	0.527													13	40					0	0	0.000308642	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94654429	94654429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:94654429C>T	uc001dqj.3	-	15	2014	c.1645G>A	c.(1645-1647)GAA>AAA	p.E549K	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Missense_Mutation_p.E115K	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	549					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		GATCTAGATTCGCTGCTCCCT	0.358													21	76					0	0	0.000586117	0	0
AMY2B	280	broad.mit.edu	37	1	104116981	104116981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:104116981C>T	uc001duq.2	+	7	1460	c.844C>T	c.(844-846)CGC>TGC	p.R282C	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.R282C|AMY2B_uc001dus.1_5'Flank	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	282					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		CACAGTTATTCGCAAGTGGAA	0.398													39	271					0	0	0.000680045	0	0
C1orf194	127003	broad.mit.edu	37	1	109649634	109649634	+	Silent	SNP	G	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:109649634G>T	uc009wev.2	-	3	377	c.309C>A	c.(307-309)ACC>ACA	p.T103T	C1orf194_uc001dwp.3_Intron|C1orf194_uc009wew.2_Silent_p.T91T	NM_001122961	NP_001116433	Q5T5A4	CA194_HUMAN	hypothetical protein LOC127003	103										ovary(1)	1						CTTACCTATAGGTATCCTGCG	0.448													6	77					8.12818e-05	0.000934069	8.12818e-05	1	0
SLC6A17	388662	broad.mit.edu	37	1	110735144	110735144	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:110735144C>T	uc009wfq.2	+	8	1584	c.1123C>T	c.(1123-1125)CTA>TTA	p.L375L	SLC6A17_uc001dze.1_5'UTR	NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	375	Extracellular (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		TGAGAAAATCCTAGGGTACCT	0.552													10	33					0	0	0.000673444	0	0
KCNA10	3744	broad.mit.edu	37	1	111060615	111060615	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:111060615G>A	uc001dzt.1	-	1	1183	c.795C>T	c.(793-795)ACC>ACT	p.T265T		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	265						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		CGGTGAACATGGTCTGGGAGA	0.557													13	54					0	0	0.000422831	0	0
ATP5F1	515	broad.mit.edu	37	1	111996858	111996858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:111996858C>T	uc001ebc.2	+	3	524	c.103C>T	c.(103-105)CAT>TAT	p.H35Y	ATP5F1_uc009wgf.1_Missense_Mutation_p.H182Y|ATP5F1_uc001ebd.3_Intron	NM_001688	NP_001679	P24539	AT5F1_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	35					ATP catabolic process|respiratory electron transport chain	mitochondrial matrix|mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transporting ATP synthase activity, rotational mechanism|protein binding				0		all_cancers(81;8.16e-06)|all_epithelial(167;5.63e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|Colorectal(144;0.0296)|all cancers(265;0.0488)|Epithelial(280;0.0732)|COAD - Colon adenocarcinoma(174;0.114)|LUSC - Lung squamous cell carcinoma(189;0.135)		AAGGACCTTTCATACAGGGCA	0.423													9	82					0	0	6.40141e-05	0	0
PHGDH	26227	broad.mit.edu	37	1	120277263	120277264	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:120277263_120277264GG>TT	uc001ehz.2	+	6	744_745	c.517_518GG>TT	c.(517-519)GGG>TTG	p.G173L	PHGDH_uc009whl.2_Missense_Mutation_p.G75L|PHGDH_uc009whm.2_Missense_Mutation_p.G71L|PHGDH_uc001eia.2_Missense_Mutation_p.G173L|PHGDH_uc009whn.2_Missense_Mutation_p.G173L|PHGDH_uc001eib.2_Missense_Mutation_p.G139L	NM_006623	NP_006614	O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	173					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			ovary(1)	1	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	CCAGACTATAGGGTATGACCCC	0.446													12	277					0	0	6.4e-05	0	0
HMGCS2	3158	broad.mit.edu	37	1	120295178	120295178	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:120295178G>T	uc001eid.2	-	8	1465	c.1414C>A	c.(1414-1416)CAT>AAT	p.H472N	HMGCS2_uc010oxj.1_Missense_Mutation_p.H430N|HMGCS2_uc001eie.2_Missense_Mutation_p.H380N	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	472					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		TTACCCTTATGGTAGAATTGC	0.468													10	342					0.000673444	0.00764428	0.000673444	1	0
TCHHL1	126637	broad.mit.edu	37	1	152057982	152057982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:152057982C>T	uc001ezo.1	-	3	2241	c.2176G>A	c.(2176-2178)GAG>AAG	p.E726K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	726							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			GAATTGTCCTCATCTAGACTT	0.458													16	77					0	0	0.00074312	0	0
RPTN	126638	broad.mit.edu	37	1	152128551	152128552	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:152128551_152128552GG>TT	uc001ezs.1	-	3	1088_1089	c.1023_1024CC>AA	c.(1021-1026)TCCCAC>TCAAAC	p.H342N		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	342	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TGACCATAGTGGGAACTCTGAC	0.495													11	457					0	0	6.4e-05	0	0
FLG	2312	broad.mit.edu	37	1	152284699	152284699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:152284699C>T	uc001ezu.1	-	3	2699	c.2663G>A	c.(2662-2664)GGA>GAA	p.G888E	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	888	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACTTCTGGATCCTGACTGCCC	0.562									Ichthyosis				53	178					0	0	0.000781405	0	0
SPRR1A	6698	broad.mit.edu	37	1	152957880	152957880	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:152957880G>A	uc009wnu.1	+	2	252	c.174G>A	c.(172-174)CAG>CAA	p.Q58Q	SPRR1A_uc001faw.2_Silent_p.Q58Q	NM_005987	NP_005978	P35321	SPR1A_HUMAN	small proline-rich protein 1A	58	6 X 8 AA approximate tandem repeats.|4.				keratinization|peptide cross-linking	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity				0	Lung NSC(65;1.46e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGCCCTGCCAGCCCAAGGTTC	0.637													7	59					0	0	0.000157383	0	0
S100A7L2	645922	broad.mit.edu	37	1	153409576	153409576	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:153409576C>T	uc010pdx.1	-	3	375	c.297G>A	c.(295-297)AAG>AAA	p.K99K		NM_001045479	NP_001038944			S100 calcium binding protein A7-like 2											ovary(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			CATGCATTATCTTGTGGTGGT	0.478													28	66					0	0	0.000227799	0	0
ZBTB7B	51043	broad.mit.edu	37	1	154988817	154988817	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:154988817G>C	uc001fgk.3	+	4	1434	c.1276G>C	c.(1276-1278)GGG>CGG	p.G426R	ZBTB7B_uc009wpa.2_Missense_Mutation_p.G426R|ZBTB7B_uc001fgj.3_Missense_Mutation_p.G460R|ZBTB7B_uc010peq.1_Missense_Mutation_p.G460R|ZBTB7B_uc001fgl.3_Missense_Mutation_p.G426R	NM_015872	NP_056956	O15156	ZBT7B_HUMAN	zinc finger and BTB domain containing 7B	426					cell differentiation|ectoderm development|multicellular organismal development|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CCTGCACACAGGGGACCGGCC	0.642													13	22					0	0	0.000151284	0	0
C1orf85	112770	broad.mit.edu	37	1	156262907	156262907	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:156262907G>A	uc001foh.2	-	6	1162	c.1149C>T	c.(1147-1149)CTC>CTT	p.L383L	C1orf85_uc001fof.3_RNA|C1orf85_uc001fog.1_RNA|C1orf85_uc001foi.2_Silent_p.L334L|C1orf85_uc009wrx.2_Silent_p.L316L|C1orf85_uc001foj.2_Silent_p.L297L	NM_144580	NP_653181	Q8WWB7	NCUG1_HUMAN	kidney predominant protein NCU-G1 precursor	383	Helical; (Potential).				positive regulation of transcription from RNA polymerase II promoter	cytosol|integral to membrane|lysosomal membrane|nucleus	ligand-dependent nuclear receptor activity|protein binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)	2	Hepatocellular(266;0.158)					CTAGCAGCATGAGCCCTGGGG	0.597													6	44					0	0	0.000157383	0	0
CD5L	922	broad.mit.edu	37	1	157805633	157805633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:157805633G>A	uc001frk.3	-	3	511	c.368C>T	c.(367-369)TCG>TTG	p.S123L		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	123	SRCR 1.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			ACTCTCACACGATGCCCCAGC	0.502													24	66					0	0	0.000878237	0	0
SPTA1	6708	broad.mit.edu	37	1	158609424	158609424	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:158609424C>T	uc001fst.1	-	35	5127	c.4928G>A	c.(4927-4929)GGA>GAA	p.G1643E		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1643	Spectrin 16.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GAGTAGGTTTCCTGCTGAAGC	0.468													27	82					0	0	0.000409698	0	0
PYHIN1	149628	broad.mit.edu	37	1	158911876	158911876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:158911876C>T	uc001ftb.2	+	5	934	c.689C>T	c.(688-690)TCC>TTC	p.S230F	PYHIN1_uc001ftc.2_Missense_Mutation_p.S221F|PYHIN1_uc001ftd.2_Missense_Mutation_p.S230F|PYHIN1_uc001fte.2_Missense_Mutation_p.S221F	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	230	HIN-200.				cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					AAATATGAATCCTCAGAAAAT	0.383													14	49					0	0	0.000151284	0	0
CD48	962	broad.mit.edu	37	1	160654704	160654704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:160654704C>T	uc001fwn.2	-	2	390	c.358G>A	c.(358-360)GAA>AAA	p.E120K	CD48_uc001fwo.1_Missense_Mutation_p.E120K|CD48_uc001fwp.2_Missense_Mutation_p.E120K	NM_001778	NP_001769	P09326	CD48_HUMAN	CD48 molecule precursor	120	Ig-like C2-type 1.				blood coagulation|defense response|leukocyte migration	integral to plasma membrane|membrane raft	protein binding				0	all_cancers(52;2.18e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			ATCTTCCATTCTTGCTCATTC	0.517													25	119					0	0	0.000339439	0	0
DDR2	4921	broad.mit.edu	37	1	162688866	162688866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:162688866C>T	uc001gcf.2	+	4	478	c.13C>T	c.(13-15)CCC>TCC	p.P5S	DDR2_uc001gcg.2_Missense_Mutation_p.P5S	NM_001014796	NP_001014796	Q16832	DDR2_HUMAN	discoidin domain receptor family, member 2	5					cell adhesion	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(2)|central_nervous_system(2)|ovary(1)|kidney(1)	6	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.113)			GATCCTGATTCCCAGAATGCT	0.453													18	84					0	0	0.000132079	0	0
DDR2	4921	broad.mit.edu	37	1	162724418	162724418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:162724418G>A	uc001gcf.2	+	6	655	c.190G>A	c.(190-192)GAC>AAC	p.D64N	DDR2_uc001gcg.2_Missense_Mutation_p.D64N	NM_001014796	NP_001014796	Q16832	DDR2_HUMAN	discoidin domain receptor family, member 2	64	Extracellular (Potential).|F5/8 type C.				cell adhesion	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(2)|central_nervous_system(2)|ovary(1)|kidney(1)	6	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.113)			CTCAAGGCTGGACTCAGAAGA	0.537													9	30					0	0	0.000442599	0	0
PBX1	5087	broad.mit.edu	37	1	164761831	164761831	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:164761831G>A	uc001gct.2	+	3	624	c.366G>A	c.(364-366)AAG>AAA	p.K122K	PBX1_uc010pku.1_Silent_p.K122K|PBX1_uc010pkv.1_Silent_p.K39K|PBX1_uc001gcs.2_Silent_p.K122K|PBX1_uc010pkw.1_Silent_p.K12K	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	122					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						GGCCTGAGAAGGGCGGAGGGT	0.502			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								10	29					0	0	6.40141e-05	0	0
C1orf156	92342	broad.mit.edu	37	1	169762604	169762604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:169762604G>A	uc001ggn.2	-	2	511	c.233C>T	c.(232-234)CCA>CTA	p.P78L	C1orf112_uc001ggj.2_Intron|C1orf112_uc001ggo.2_5'Flank|uc010plt.1_5'Flank|C1orf112_uc001ggp.2_5'Flank|C1orf112_uc001ggq.2_5'Flank|C1orf112_uc009wvt.2_5'Flank	NM_033418	NP_219486	O95568	MET18_HUMAN	hypothetical protein MGC9084	78						cytoplasm	protein methyltransferase activity				0	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TGCACTGAGTGGACTGTCTGT	0.463													12	34					0	0	0.000151284	0	0
DNM3	26052	broad.mit.edu	37	1	171958194	171958194	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:171958194G>A	uc001gie.2	+	4	671	c.495G>A	c.(493-495)ACG>ACA	p.T165T	DNM3_uc001gid.3_Silent_p.T165T|DNM3_uc009wwb.2_Silent_p.T165T|DNM3_uc001gif.2_Silent_p.T165T	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	165					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						AGTTCATCACGAGGGAGAACT	0.433													5	13					0	0	0.000602214	0	0
TNR	7143	broad.mit.edu	37	1	175355287	175355287	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:175355287T>G	uc001gkp.1	-	6	1739	c.1658A>C	c.(1657-1659)CAG>CCG	p.Q553P	TNR_uc009wwu.1_Missense_Mutation_p.Q553P	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	553	Fibronectin type-III 3.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CAGGGGAGGCTGCAGCCGGAA	0.602													4	27					0	0	0.000602214	0	0
PAPPA2	60676	broad.mit.edu	37	1	176563915	176563915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:176563915C>T	uc001gkz.2	+	3	2339	c.1175C>T	c.(1174-1176)TCT>TTT	p.S392F	PAPPA2_uc001gky.1_Missense_Mutation_p.S392F|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	392					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTAGACCAGTCTGGTCCCCTG	0.587													15	29					0	0	0.000308642	0	0
PAPPA2	60676	broad.mit.edu	37	1	176668693	176668693	+	Silent	SNP	G	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:176668693G>T	uc001gkz.2	+	8	4368	c.3204G>T	c.(3202-3204)GTG>GTT	p.V1068V	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1068					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGCCCGTGGTGGTGACACATT	0.567													16	67					7.07596e-05	0.000816525	0.00074312	1	0
LHX9	56956	broad.mit.edu	37	1	197898258	197898258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:197898258C>T	uc001guk.1	+	5	1500	c.1063C>T	c.(1063-1065)CCA>TCA	p.P355S	LHX9_uc001gui.1_Missense_Mutation_p.P346S|LHX9_uc001guj.1_Intron	NM_020204	NP_064589	Q9NQ69	LHX9_HUMAN	LIM homeobox 9 isoform 1	355					motor axon guidance|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						AGCTCTCACTCCACCCGGCAC	0.572													13	56					0	0	0.000422831	0	0
LRRN2	10446	broad.mit.edu	37	1	204588730	204588730	+	Missense_Mutation	SNP	G	A	A	rs148739326		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:204588730G>A	uc001hbe.1	-	3	779	c.391C>T	c.(391-393)CGG>TGG	p.R131W	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Missense_Mutation_p.R131W|LRRN2_uc009xbf.1_Missense_Mutation_p.R131W|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	131	LRR 3.|Extracellular (Potential).				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			TCCTCCAGCCGGGTCAGCTGG	0.607													23	65					0	0	0.000586117	0	0
CDK18	5129	broad.mit.edu	37	1	205500479	205500479	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:205500479G>A	uc001hcr.2	+	16	1707	c.1488G>A	c.(1486-1488)GGG>GGA	p.G496G	CDK18_uc001hcp.2_Silent_p.G466G|CDK18_uc001hcq.2_Silent_p.G466G|CDK18_uc010prj.1_Silent_p.G377G|CDK18_uc001hcs.2_Silent_p.G377G|CDK18_uc001hct.2_RNA	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	464							ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						CAGGACGAGGGAAGAACAGGC	0.617													6	33					0	0	8.12818e-05	0	0
CTSE	1510	broad.mit.edu	37	1	206331162	206331162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:206331162G>A	uc001hdu.2	+	9	1286	c.1168G>A	c.(1168-1170)GGA>AGA	p.G390R	CTSE_uc001hdv.2_Nonsense_Mutation_p.W342*|CTSE_uc010prs.1_Nonsense_Mutation_p.W267*	NM_001910	NP_001901	P14091	CATE_HUMAN	cathepsin E isoform a preproprotein	395					antigen processing and presentation of exogenous peptide antigen via MHC class II|digestion|proteolysis	endosome	aspartic-type endopeptidase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.0754)			TAACCGTGTGGGACTGGCCCC	0.547													19	99					0	0	0.00047179	0	0
PIGR	5284	broad.mit.edu	37	1	207110523	207110523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:207110523C>T	uc001hez.2	-	4	1146	c.962G>A	c.(961-963)GGG>GAG	p.G321E	PIGR_uc009xbz.2_Missense_Mutation_p.G321E	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	321	Ig-like V-type 3.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CAGGTAGCGCCCTGCATCCTC	0.592													4	20					0	0	0.000602214	0	0
RYR2	6262	broad.mit.edu	37	1	237787107	237787107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr1:237787107C>T	uc001hyl.1	+	39	6079	c.5959C>T	c.(5959-5961)CCA>TCA	p.P1987S		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1987	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AAGTGAATGTCCATGTCCAGA	0.323													17	74					0	0	0.000295444	0	0
FAM171A1	221061	broad.mit.edu	37	10	15256299	15256299	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:15256299C>T	uc001iob.2	-	8	1295	c.1288G>A	c.(1288-1290)GAG>AAG	p.E430K		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	430	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GAGAGGAGCTCCTCCCGGGAG	0.542													13	31					0	0	0.00010058	0	0
FAM171A1	221061	broad.mit.edu	37	10	15290697	15290697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:15290697G>A	uc001iob.2	-	5	702	c.695C>T	c.(694-696)ACG>ATG	p.T232M		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	232	Extracellular (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GCTGCTCTGCGTGGCCAGGGG	0.602													12	55					0	0	0.000308642	0	0
MYO3A	53904	broad.mit.edu	37	10	26500832	26500832	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:26500832C>T	uc001isn.2	+	35	5151	c.4791C>T	c.(4789-4791)TAC>TAT	p.Y1597Y	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Nonsense_Mutation_p.R613*	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1597					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						CCAACCCCTACGACTTCAGGA	0.652													8	24					0	0	0.000157383	0	0
C10orf71	118461	broad.mit.edu	37	10	50532236	50532236	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:50532236A>G	uc010qgp.1	+	3	1985	c.1646A>G	c.(1645-1647)GAG>GGG	p.E549G		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	549											0						AATGGGCTTGAGGAAAGCCCT	0.512													9	21					0	0	0.000274275	0	0
PCDH15	65217	broad.mit.edu	37	10	55566674	55566674	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:55566674G>A	uc010qhq.1	-	36	5109	c.4714C>T	c.(4714-4716)CGA>TGA	p.R1572*	PCDH15_uc010qhr.1_Nonsense_Mutation_p.R1567*	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	425	Cadherin 4.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CCTCCCAGTCGAACAGGGGAA	0.453										HNSCC(58;0.16)			17	70					0	0	0.000566183	0	0
PCDH15	65217	broad.mit.edu	37	10	55582009	55582009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:55582009G>A	uc001jju.1	-	33	5872	c.5477C>T	c.(5476-5478)CCT>CTT	p.P1826L	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.P1823L|PCDH15_uc010qhw.1_Missense_Mutation_p.P1786L|PCDH15_uc010qhx.1_Missense_Mutation_p.P1757L|PCDH15_uc010qhy.1_Missense_Mutation_p.P1833L|PCDH15_uc010qhz.1_Missense_Mutation_p.P1828L|PCDH15_uc010qia.1_Missense_Mutation_p.P1806L|PCDH15_uc010qib.1_Missense_Mutation_p.P1803L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1826	Poly-Pro.|Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				tggagggcaaggaatagaagg	0.269										HNSCC(58;0.16)			8	26					0	0	0.000274275	0	0
ZNF365	22891	broad.mit.edu	37	10	64136580	64136580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:64136580G>A	uc001jmc.2	+	2	943	c.628G>A	c.(628-630)GAA>AAA	p.E210K	ZNF365_uc001jly.3_Missense_Mutation_p.E225K|ZNF365_uc001jmb.3_Missense_Mutation_p.E210K|ZNF365_uc001jlz.3_Missense_Mutation_p.E210K|ZNF365_uc001jma.3_Intron	NM_199451	NP_955523	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform C	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					GAAAAAGCAGGAAGTTCAGAG	0.507													21	96					0	0	0.000375601	0	0
OIT3	170392	broad.mit.edu	37	10	74690333	74690334	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:74690333_74690334CG>AT	uc001jte.1	+	8	1623_1624	c.1405_1406CG>AT	c.(1405-1407)CGG>ATG	p.R469M	OIT3_uc009xqs.1_RNA	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	469	ZP.					nuclear envelope	calcium ion binding			ovary(2)	2	Prostate(51;0.0198)					GTACACATCCCGGGATCACCTA	0.436													6	155					0	0	6.4e-05	0	0
ANXA11	311	broad.mit.edu	37	10	81917398	81917398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:81917398G>A	uc001kbq.1	-	16	2282	c.1457C>T	c.(1456-1458)TCG>TTG	p.S486L	ANXA11_uc010qlx.1_Missense_Mutation_p.S586L|ANXA11_uc001kbr.1_Missense_Mutation_p.S486L|ANXA11_uc001kbs.1_Missense_Mutation_p.S486L|ANXA11_uc001kbt.1_Missense_Mutation_p.S486L|ANXA11_uc010qly.1_Missense_Mutation_p.S453L|ANXA11_uc009xsq.1_Missense_Mutation_p.S490L|ANXA11_uc001kbu.1_Missense_Mutation_p.S486L	NM_145869	NP_665876	P50995	ANX11_HUMAN	annexin A11	486	Annexin 4.				cell cycle|cytokinesis, completion of separation|phagocytosis|response to calcium ion	azurophil granule|melanosome|midbody|nuclear envelope|nucleoplasm|phagocytic vesicle|specific granule|spindle	calcium-dependent phospholipid binding|calcium-dependent protein binding|S100 alpha binding			ovary(1)	1	Prostate(51;0.00985)|all_epithelial(25;0.0951)		Colorectal(32;0.109)			GGCCCGTACCGAGATGTCGTG	0.577													10	29					0	0	0.000151284	0	0
GRID1	2894	broad.mit.edu	37	10	87487683	87487683	+	Missense_Mutation	SNP	G	T	T	rs145118691		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:87487683G>T	uc001kdl.1	-	10	1563	c.1462C>A	c.(1462-1464)CCT>ACT	p.P488T	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Missense_Mutation_p.P59T	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	488	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CTGCCATCAGGGGCTTGGTAA	0.547										Multiple Myeloma(13;0.14)			8	88					0.000274275	0.00313893	0.000274275	1	0
CYP2C19	1557	broad.mit.edu	37	10	96540369	96540369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:96540369G>A	uc010qnz.1	+	4	595	c.595G>A	c.(595-597)GAA>AAA	p.E199K	CYP2C19_uc009xus.1_Missense_Mutation_p.E64K|CYP2C19_uc010qny.1_Missense_Mutation_p.E177K	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	199					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TAACTTGATGGAAAAATTGAA	0.408													27	73					0	0	0.000184323	0	0
PDZD7	79955	broad.mit.edu	37	10	102789755	102789755	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:102789755G>C	uc001kso.1	-	2	437	c.222C>G	c.(220-222)ATC>ATG	p.I74M	PDZD7_uc001ksn.2_Missense_Mutation_p.I74M|SFXN3_uc001ksp.2_5'Flank|SFXN3_uc001ksq.2_5'Flank|SFXN3_uc010qpx.1_5'Flank	NM_024895	NP_079171	Q9H5P4	PDZD7_HUMAN	PDZ domain containing 7	74						cilium|nucleus	protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3				Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		CCCTACCTTCGATGGGGGAGT	0.637													5	38					0	0	8.12818e-05	0	0
SEC23IP	11196	broad.mit.edu	37	10	121663757	121663757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:121663757C>T	uc001leu.1	+	4	1141	c.1069C>T	c.(1069-1071)CCC>TCC	p.P357S	SEC23IP_uc010qtc.1_Missense_Mutation_p.P146S	NM_007190	NP_009121	Q9Y6Y8	S23IP_HUMAN	Sec23-interacting protein p125	357	Interaction with SEC23A.				Golgi organization|intracellular protein transport	endoplasmic reticulum|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment	metal ion binding			ovary(3)	3		Lung NSC(174;0.109)|all_lung(145;0.142)|all_neural(114;0.234)		all cancers(201;0.00515)		TCGATTTATTCCCTATACTGA	0.423													11	40					0	0	6.40141e-05	0	0
FGFR2	2263	broad.mit.edu	37	10	123239441	123239441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:123239441G>A	uc010qtk.1	-	19	3043	c.2396C>T	c.(2395-2397)TCT>TTT	p.S799F	FGFR2_uc010qtg.1_Missense_Mutation_p.S687F|FGFR2_uc010qth.1_Missense_Mutation_p.S684F|FGFR2_uc010qti.1_Intron|FGFR2_uc010qtj.1_Missense_Mutation_p.S800F|FGFR2_uc010qtl.1_Missense_Mutation_p.S683F|FGFR2_uc010qtm.1_Missense_Mutation_p.S682F|FGFR2_uc001lfg.3_Missense_Mutation_p.S407F|FGFR2_uc001lfk.1_RNA	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	799	Cytoplasmic (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	GGGGTCTGGAGAAAAAACAGA	0.453		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				19	43					0	0	0.000132079	0	0
CUZD1	50624	broad.mit.edu	37	10	124596416	124596416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr10:124596416C>T	uc001lgq.2	-	5	1080	c.748G>A	c.(748-750)GAT>AAT	p.D250N	CUZD1_uc001lgp.2_5'UTR|CUZD1_uc009yad.2_5'UTR|CUZD1_uc009yaf.2_Intron|CUZD1_uc001lgr.2_5'UTR|CUZD1_uc010qty.1_Splice_Site|CUZD1_uc009yae.2_Splice_Site|CUZD1_uc001lgs.2_Missense_Mutation_p.D250N|CUZD1_uc010qtz.1_Missense_Mutation_p.D250N	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	250	Extracellular (Potential).|CUB 2.				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		TTGGCATAATCTGTAGACAAC	0.438													21	67					0	0	0.000586117	0	0
TRPM5	29850	broad.mit.edu	37	11	2443413	2443413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:2443413C>T	uc001lwm.3	-	2	265	c.256G>A	c.(256-258)GAT>AAT	p.D86N	TRPM5_uc010qxl.1_Missense_Mutation_p.D86N|TRPM5_uc009ydn.2_Missense_Mutation_p.D86N	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	86	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		CGCAGCACATCCCGCAGCCAG	0.687													11	55					0	0	6.40141e-05	0	0
MMP26	56547	broad.mit.edu	37	11	5012687	5012687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:5012687C>T	uc001lzv.2	+	4	574	c.556C>T	c.(556-558)CAT>TAT	p.H186Y		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	186					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		TGGAGTTGTCCATTTTGACAA	0.483													17	105					0	0	0.000422831	0	0
OR51L1	119682	broad.mit.edu	37	11	5020224	5020224	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:5020224G>A	uc010qyu.1	+	1	12	c.12G>A	c.(10-12)TGG>TGA	p.W4*		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGGAGACTGGAATAACAGTG	0.418													23	77					0	0	0.000878237	0	0
OR51V1	283111	broad.mit.edu	37	11	5221254	5221254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:5221254G>A	uc010qyz.1	-	1	677	c.677C>T	c.(676-678)TCC>TTC	p.S226F		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	226	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGGATGTAGGAGAAAAGGAT	0.448													7	42					0	0	0.000157383	0	0
OR51I2	390064	broad.mit.edu	37	11	5475289	5475289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:5475289G>A	uc010qzf.1	+	1	571	c.571G>A	c.(571-573)GAT>AAT	p.D191N	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	191	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCCTGTGCTGATATCAGTAT	0.458													22	80					0	0	0.000375601	0	0
OR51I2	390064	broad.mit.edu	37	11	5475407	5475407	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:5475407C>T	uc010qzf.1	+	1	689	c.689C>T	c.(688-690)TCC>TTC	p.S230F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCCACTGCTTCCCGTGAGGAA	0.478													23	88					0	0	0.000295444	0	0
OR52N4	390072	broad.mit.edu	37	11	5776059	5776059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:5776059C>T	uc001mbu.2	+	1	137	c.89C>T	c.(88-90)TCC>TTC	p.S30F	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		CTCTGGATTTCCTTCCCATTC	0.438													10	56					0	0	0.000673444	0	0
OR56A3	390083	broad.mit.edu	37	11	5969351	5969351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:5969351C>T	uc010qzt.1	+	1	775	c.775C>T	c.(775-777)CTT>TTT	p.L259F		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	259	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGCACCATCCTTCTGGTTTT	0.522													46	135					0	0	0.000781405	0	0
AMPD3	272	broad.mit.edu	37	11	10524388	10524389	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:10524388_10524389GG>AT	uc001mio.1	+	13	2298_2299	c.1963_1964GG>AT	c.(1963-1965)GGA>ATA	p.G655I	AMPD3_uc010rbz.1_Missense_Mutation_p.G496I|AMPD3_uc001min.1_Missense_Mutation_p.G664I|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.G662I|AMPD3_uc009yfy.2_Missense_Mutation_p.G655I	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	655					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		CCTACACAAGGGACTGCATGTT	0.495													8	42					0	0	6.4e-05	0	0
PDE3B	5140	broad.mit.edu	37	11	14665713	14665713	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:14665713A>G	uc001mln.2	+	1	445	c.92A>G	c.(91-93)TAC>TGC	p.Y31C	PDE3B_uc001mlm.2_Missense_Mutation_p.Y31C|PDE3B_uc010rcr.1_Missense_Mutation_p.Y31C|PSMA1_uc001mll.2_5'Flank	NM_000922	NP_000913	Q13370	PDE3B_HUMAN	phosphodiesterase 3B	31					cAMP catabolic process|insulin receptor signaling pathway|negative regulation of lipid catabolic process|platelet activation	cytosol|endoplasmic reticulum|Golgi apparatus|guanyl-nucleotide exchange factor complex|integral to membrane|microsome	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding|protein kinase B binding				0						AGGAACGGCTACGTGAAGAGC	0.711													3	7					0	0	6.4e-05	0	0
ABCC8	6833	broad.mit.edu	37	11	17483187	17483187	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:17483187G>A	uc001mnc.2	-	5	891	c.765C>T	c.(763-765)ATC>ATT	p.I255I	ABCC8_uc010rcy.1_Silent_p.I255I	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	255	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CCCTCATGGCGATGGGCAGCT	0.587													70	241					0	0	0.000781405	0	0
SLC17A6	57084	broad.mit.edu	37	11	22399065	22399065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:22399065G>A	uc001mqk.2	+	12	1941	c.1528G>A	c.(1528-1530)GAA>AAA	p.E510K		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	510	Cytoplasmic (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						AGACCCGGAGGAAACAAGTGA	0.408													7	30					0	0	0.000157383	0	0
MTCH2	23788	broad.mit.edu	37	11	47640455	47640455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:47640455C>T	uc010rho.1	-	13	1031	c.842G>A	c.(841-843)GGA>GAA	p.G281E	MTCH2_uc001nge.2_Missense_Mutation_p.G154E|MTCH2_uc010rhp.1_Missense_Mutation_p.G133E	NM_014342	NP_055157	Q9Y6C9	MTCH2_HUMAN	mitochondrial carrier 2	281					transport	integral to membrane|mitochondrial inner membrane					0						TAAGCTATTTCCTCGGCTCAT	0.393													22	125					0	0	0.000586117	0	0
OR4C13	283092	broad.mit.edu	37	11	49974085	49974085	+	Missense_Mutation	SNP	G	A	A	rs141161603		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:49974085G>A	uc010rhz.1	+	1	111	c.111G>A	c.(109-111)ATG>ATA	p.M37I		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.M37I(1)		skin(3)|ovary(1)	4						TCAACGCCATGATAGGAAATG	0.418													28	124					0	0	0.000227799	0	0
OR4C13	283092	broad.mit.edu	37	11	49974865	49974865	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:49974865G>A	uc010rhz.1	+	1	891	c.891G>A	c.(889-891)AGG>AGA	p.R297R		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						ATGCCATTAGGAAATTGTGTA	0.373													7	33					0	0	8.12818e-05	0	0
SPRYD5	84767	broad.mit.edu	37	11	55653186	55653186	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:55653186G>A	uc010rip.1	+	2	374	c.282G>A	c.(280-282)GGG>GGA	p.G94G	SPRYD5_uc010riq.1_5'Flank	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	94	B box-type.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)				AAATATGTGGGATGCACAGAG	0.478													5	22					0	0	0.000602214	0	0
OR8H2	390151	broad.mit.edu	37	11	55873147	55873147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:55873147C>T	uc010riy.1	+	1	629	c.629C>T	c.(628-630)TCC>TTC	p.S210F		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					CTGATGGTGTCCCTTTTCACA	0.398										HNSCC(53;0.14)			24	83					0	0	0.000586117	0	0
AHNAK	79026	broad.mit.edu	37	11	62296070	62296070	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:62296070A>G	uc001ntl.2	-	5	6119	c.5819T>C	c.(5818-5820)GTG>GCG	p.V1940A	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1940					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CGACACATCCACATCCCCTTT	0.502													6	251					0	0	3.59834e-05	0	0
SLC22A9	114571	broad.mit.edu	37	11	63149726	63149726	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:63149726G>A	uc001nww.2	+	6	1318	c.1050G>A	c.(1048-1050)AGG>AGA	p.R350R	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	350	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						TATGTAAAAGGATCTCCCTCC	0.408													22	119					0	0	0.000375601	0	0
CDCA5	113130	broad.mit.edu	37	11	64850834	64850834	+	Splice_Site	SNP	A	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:64850834A>C	uc001ocp.2	-	4	408	c.243_splice	c.e4+1	p.R81_splice	ZFPL1_uc009yqa.2_5'Flank|ZFPL1_uc001ocq.1_5'Flank|ZFPL1_uc010rnx.1_5'Flank	NM_080668	NP_542399	Q96FF9	CDCA5_HUMAN	cell division cycle associated 5						cell division|double-strand break repair|G1/S transition of mitotic cell cycle|mitotic chromosome condensation|mitotic metaphase plate congression|mitotic sister chromatid cohesion|regulation of cohesin localization to chromatin	cytoplasm|nuclear chromatin|plasma membrane	chromatin binding|identical protein binding				0						AAGTGAACTCACCCTAGGGCT	0.527													13	33					0	0	0.000422831	0	0
MRGPRD	116512	broad.mit.edu	37	11	68747577	68747577	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:68747577C>T	uc010rqf.1	-	1	879	c.879G>A	c.(877-879)GGG>GGA	p.G293G		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	293	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			GGAGCACAGTCCCCAGGGACC	0.672													6	34					0	0	8.12818e-05	0	0
FCHSD2	9873	broad.mit.edu	37	11	72552619	72552619	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:72552619A>G	uc009ytl.2	-	18	2157	c.1936T>C	c.(1936-1938)TCC>CCC	p.S646P	FCHSD2_uc010rrg.1_Missense_Mutation_p.S510P|FCHSD2_uc001oth.3_Missense_Mutation_p.S590P|ATG16L2_uc009ytj.1_Intron	NM_014824	NP_055639	O94868	FCSD2_HUMAN	FCH and double SH3 domains 2	646							protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(5;3.3e-05)			GGCTTGGGGGAAGGAGAGATC	0.607													36	113					0	0	0.000319135	0	0
PCF11	51585	broad.mit.edu	37	11	82892196	82892196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:82892196G>A	uc001ozx.3	+	12	4475	c.4130G>A	c.(4129-4131)CGA>CAA	p.R1377Q		NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	1377					mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						GATGTTAGCCGAAAAGTCACT	0.343													6	38					0	0	0.000274275	0	0
FAT3	120114	broad.mit.edu	37	11	92532476	92532477	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:92532476_92532477CG>AT	uc001pdj.3	+	9	6314_6315	c.6297_6298CG>AT	c.(6295-6300)CCCGGG>CCATGG	p.G2100W		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2100	Cadherin 19.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATGCGGAACCCGGGACTCTGAT	0.455										TCGA Ovarian(4;0.039)			10	355					0	0	6.4e-05	0	0
MMP1	4312	broad.mit.edu	37	11	102663421	102663421	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:102663421G>A	uc001phi.2	-	7	1091	c.948C>T	c.(946-948)TTC>TTT	p.F316F	uc001phh.1_Intron|MMP1_uc010ruv.1_Silent_p.F250F	NM_002421	NP_002412	P03956	MMP1_HUMAN	matrix metalloproteinase 1 isoform 1	316	Hemopexin-like 1.				blood coagulation|collagen catabolic process|interspecies interaction between organisms|leukocyte migration|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)|lung(1)	4	all_epithelial(12;0.0127)	all_neural(303;0.000318)|all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.072)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.233)	OV - Ovarian serous cystadenocarcinoma(223;1.82e-07)|Epithelial(105;1.51e-06)|BRCA - Breast invasive adenocarcinoma(274;0.014)		AAACAGAAATGAAATTGAGCT	0.393													15	59					0	0	0.000422831	0	0
CARD16	114769	broad.mit.edu	37	11	104915239	104915239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:104915239C>T	uc001pip.1	-	2	181	c.154G>A	c.(154-156)GAT>AAT	p.D52N	CASP1_uc010rve.1_Intron|CASP1_uc010rvf.1_Intron|CASP1_uc010rvg.1_Intron|CASP1_uc010rvh.1_Intron|CASP1_uc010rvi.1_Intron|CARD16_uc001pio.1_Missense_Mutation_p.D52N	NM_001017534	NP_001017534	Q5EG05	CAR16_HUMAN	caspase-1 dominant-negative inhibitor pseudo-ICE	52	CARD.				regulation of apoptosis	intracellular	cysteine-type endopeptidase inhibitor activity			skin(1)	1						CGGGTCTTATCCATAACTGTA	0.418													31	114					0	0	0.000692331	0	0
ELMOD1	55531	broad.mit.edu	37	11	107526672	107526672	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:107526672A>G	uc010rvs.1	+	11	1116	c.712A>G	c.(712-714)ATT>GTT	p.I238V	ELMOD1_uc001pjm.2_Missense_Mutation_p.I230V|ELMOD1_uc010rvt.1_Missense_Mutation_p.I232V	NM_018712	NP_061182	Q8N336	ELMD1_HUMAN	ELMO/CED-12 domain containing 1 isoform 1	238	ELMO.				phagocytosis	cytoskeleton	GTPase activator activity				0		Melanoma(852;0.000288)|Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00301)|all_epithelial(67;0.00304)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)|Epithelial(105;0.00027)|all cancers(92;0.00481)		CTCATTTGCAATTGTGGGCAT	0.333													3	15					0	0	0.000602214	0	0
EXPH5	23086	broad.mit.edu	37	11	108381986	108381986	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:108381986G>A	uc001pkk.2	-	6	4359	c.4248C>T	c.(4246-4248)TCC>TCT	p.S1416S	EXPH5_uc010rvy.1_Silent_p.S1228S|EXPH5_uc010rvz.1_Silent_p.S1260S|EXPH5_uc010rwa.1_Silent_p.S1340S	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1416					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TTGAATTAATGGATTGTTGAC	0.373													25	84					0	0	0.000878237	0	0
POU2AF1	5450	broad.mit.edu	37	11	111228230	111228230	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:111228230C>T	uc001plg.3	-	4	651	c.396G>A	c.(394-396)ACG>ACA	p.T132T		NM_006235	NP_006226	Q16633	OBF1_HUMAN	POU class 2 associating factor 1	132					humoral immune response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			kidney(1)	1		all_cancers(61;1.36e-12)|all_epithelial(67;1.87e-07)|Melanoma(852;1.46e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|all_neural(223;0.0146)|Medulloblastoma(222;0.0245)|Breast(348;0.0389)		Epithelial(105;1.01e-06)|BRCA - Breast invasive adenocarcinoma(274;3.12e-06)|all cancers(92;1.8e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0364)		GCCCCACCACCGTGTAGCTGG	0.592			T	BCL6	NHL								9	26					0	0	0.000442599	0	0
Unknown	0	broad.mit.edu	37	11	113660519	113660519	+	RNA	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:113660519G>A	uc001pof.1	+	1		c.567G>A								Homo sapiens cDNA FLJ36034 fis, clone TESTI2017107, highly similar to CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-4.																		CCCCGATGAGGAGCTGCGCCA	0.587													4	8					0	0	0.00024832	0	0
USP28	57646	broad.mit.edu	37	11	113679967	113679968	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:113679967_113679968GG>TT	uc001poh.2	-	17	2014_2015	c.1981_1982CC>AA	c.(1981-1983)CCA>AAA	p.P661K	USP28_uc001pog.2_Missense_Mutation_p.P369K|USP28_uc010rwy.1_Missense_Mutation_p.P536K|USP28_uc001poi.2_Missense_Mutation_p.P16K	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	661					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		TGATTCAGTTGGGGCTGCCTCT	0.416													9	241					0	0	6.4e-05	0	0
HTR3B	9177	broad.mit.edu	37	11	113802541	113802541	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:113802541C>T	uc001pok.2	+	4	387	c.320C>T	c.(319-321)TCC>TTC	p.S107F	HTR3B_uc001pol.2_Missense_Mutation_p.S96F	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	107	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		AGAGAGATCTCCCTACCTCTA	0.423													11	59					0	0	0.000219431	0	0
TBCEL	219899	broad.mit.edu	37	11	120925773	120925773	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr11:120925773C>T	uc009zay.2	+	5	546	c.468C>T	c.(466-468)CTC>CTT	p.L156L	TBCEL_uc001pxo.2_Silent_p.L156L|TBCEL_uc001pxp.2_Silent_p.L12L|TBCEL_uc001pxq.2_Intron	NM_001130047	NP_001123519	Q5QJ74	TBCEL_HUMAN	tubulin folding cofactor E-like	156	LRR 4.					cytoplasm|cytoskeleton				skin(1)	1		Breast(109;0.00526)|Medulloblastoma(222;0.0523)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;5.89e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.121)		TGGAGGAGCTCTTCCTGTGCC	0.308													4	29					0	0	0.000602214	0	0
CACNA1C	775	broad.mit.edu	37	12	2717803	2717803	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:2717803C>T	uc009zdu.1	+	28	3856	c.3543C>T	c.(3541-3543)TTC>TTT	p.F1181F	CACNA1C_uc009zdv.1_Silent_p.F1158F|CACNA1C_uc001qkb.2_Silent_p.F1161F|CACNA1C_uc001qkc.2_Silent_p.F1161F|CACNA1C_uc001qke.2_Silent_p.F1161F|CACNA1C_uc001qkf.2_Silent_p.F1161F|CACNA1C_uc001qjz.2_Silent_p.F1161F|CACNA1C_uc001qkd.2_Silent_p.F1161F|CACNA1C_uc001qkg.2_Silent_p.F1161F|CACNA1C_uc009zdw.1_Silent_p.F1161F|CACNA1C_uc001qkh.2_Silent_p.F1161F|CACNA1C_uc001qkl.2_Silent_p.F1181F|CACNA1C_uc001qkn.2_Silent_p.F1161F|CACNA1C_uc001qko.2_Silent_p.F1181F|CACNA1C_uc001qkp.2_Silent_p.F1161F|CACNA1C_uc001qkr.2_Silent_p.F1161F|CACNA1C_uc001qku.2_Silent_p.F1161F|CACNA1C_uc001qkq.2_Silent_p.F1161F|CACNA1C_uc001qks.2_Silent_p.F1161F|CACNA1C_uc001qkt.2_Silent_p.F1161F|CACNA1C_uc001qka.1_Silent_p.F696F|CACNA1C_uc001qki.1_Silent_p.F897F|CACNA1C_uc001qkj.1_Silent_p.F897F|CACNA1C_uc001qkk.1_Silent_p.F897F|CACNA1C_uc001qkm.1_Silent_p.F897F	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1181	III.|Helical; Name=S6 of repeat III; (Potential).|Dihydropyridine binding (By similarity).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	tgaacatcttcgtgggcttcg	0.333													9	25					0	0	0.000274275	0	0
KCNA1	3736	broad.mit.edu	37	12	5020959	5020959	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:5020959G>A	uc001qnh.2	+	2	1520	c.415G>A	c.(415-417)GAG>AAG	p.E139K		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	139					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CTTCATCAAGGAGGAGGAGCG	0.627													7	34					0	0	8.12818e-05	0	0
ANO2	57101	broad.mit.edu	37	12	5939637	5939637	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:5939637C>T	uc001qnm.2	-	6	864	c.792G>A	c.(790-792)AAG>AAA	p.K264K		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	269	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						AGAAGGTGTCCTTTTCCTGGA	0.488													9	19					0	0	6.40141e-05	0	0
LRRC23	10233	broad.mit.edu	37	12	7019057	7019057	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:7019057C>T	uc001qrt.3	+	6	1017	c.625C>T	c.(625-627)CAA>TAA	p.Q209*	LRRC23_uc001qrp.2_Nonsense_Mutation_p.Q209*|LRRC23_uc001qrq.2_Nonsense_Mutation_p.Q209*|LRRC23_uc001qrr.2_Nonsense_Mutation_p.Q158*|LRRC23_uc001qrs.2_Nonsense_Mutation_p.Q158*|LRRC23_uc009zfh.2_Intron	NM_001135217	NP_001128689	Q53EV4	LRC23_HUMAN	leucine rich repeat containing 23 isoform a	209	LRR 6.									ovary(1)	1						GGTCTAGGCCCAAAACATGCT	0.498													11	45					0	0	0.00010058	0	0
CD163	9332	broad.mit.edu	37	12	7651733	7651733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:7651733C>T	uc001qsz.3	-	4	637	c.509G>A	c.(508-510)GGA>GAA	p.G170E	CD163_uc001qta.3_Missense_Mutation_p.G170E|CD163_uc009zfw.2_Missense_Mutation_p.G170E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	170	SRCR 2.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CTCTATTCTTCCAGAACACAT	0.413													47	212					0	0	0.000781405	0	0
PZP	5858	broad.mit.edu	37	12	9307347	9307347	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:9307347C>T	uc001qvl.2	-	29	3668	c.3639G>A	c.(3637-3639)GAG>GAA	p.E1213E	PZP_uc009zgl.2_Silent_p.E999E	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						AGGATGTCATCTCCACCTCAG	0.572													8	29					0	0	0.000274275	0	0
GPRC5A	9052	broad.mit.edu	37	12	13061495	13061495	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:13061495C>T	uc001rba.2	+	2	962	c.312C>T	c.(310-312)CTC>CTT	p.L104L	GPRC5A_uc001raz.2_Silent_p.L104L	NM_003979	NP_003970	Q8NFJ5	RAI3_HUMAN	G protein-coupled receptor, family C, group 5,	104	Helical; Name=3; (Potential).					cytoplasmic vesicle membrane|Golgi apparatus|integral to plasma membrane	G-protein coupled receptor activity				0		Prostate(47;0.141)		BRCA - Breast invasive adenocarcinoma(232;0.0708)	Tretinoin(DB00755)	TTGGGATCCTCTTTTCCATCT	0.587													21	107					0	0	0.000375601	0	0
GUCY2C	2984	broad.mit.edu	37	12	14849245	14849245	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:14849245G>A	uc001rcd.2	-	1	275	c.138C>T	c.(136-138)GCC>GCT	p.A46A	GUCY2C_uc009zhz.2_Silent_p.A46A	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	46	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						GCTCTGCAAAGGCTGAGTTGC	0.493													5	24					0	0	3.59834e-05	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21196426	21196426	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:21196426T>G	uc010sin.1	+	6	745	c.745T>G	c.(745-747)TTG>GTG	p.L249V	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Missense_Mutation_p.L296V	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	249						membrane	transporter activity				0						TTCACTATTTTTGCATGTGCT	0.299													9	26					0	0	0.000442599	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50189746	50189746	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:50189746G>A	uc009zlk.2	-	8	2099	c.1897C>T	c.(1897-1899)CCC>TCC	p.P633S	NCKAP5L_uc001rvc.3_5'Flank|NCKAP5L_uc001rvb.2_Missense_Mutation_p.P226S	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	629										central_nervous_system(1)	1						CTGCGGCCGGGATGGGGAGAC	0.647													4	5					0	0	0.00024832	0	0
AQP6	363	broad.mit.edu	37	12	50369414	50369414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:50369414C>T	uc001rvr.1	+	4	1146	c.809C>T	c.(808-810)TCC>TTC	p.S270F	AQP6_uc001rvp.1_Missense_Mutation_p.S96F|AQP6_uc001rvq.1_RNA	NM_001652	NP_001643	Q13520	AQP6_HUMAN	aquaporin 6	270	Cytoplasmic (Potential).				excretion|odontogenesis	integral to plasma membrane|transport vesicle membrane	anion channel activity|water channel activity				0						AAGAAGGAATCCCAGCCGGGT	0.672													5	12					0	0	0.000602214	0	0
HOXC11	3227	broad.mit.edu	37	12	54367074	54367074	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:54367074G>A	uc001sem.2	+	1	165	c.49G>A	c.(49-51)GAG>AAG	p.E17K		NM_014212	NP_055027	O43248	HXC11_HUMAN	homeobox C11	17					endoderm development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GTCGCGCAAGGAGAGGGGCGC	0.597			T	NUP98	AML								15	26					0	0	0.000132079	0	0
ERBB3	2065	broad.mit.edu	37	12	56487288	56487288	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:56487288G>A	uc001sjh.2	+	12	1627	c.1434G>A	c.(1432-1434)ACG>ACA	p.T478T	ERBB3_uc009zoj.2_Intron|ERBB3_uc010sqb.1_Intron|ERBB3_uc010sqc.1_Silent_p.T419T|ERBB3_uc009zok.2_5'Flank|ERBB3_uc001sjk.2_5'Flank|ERBB3_uc001sjj.1_Silent_p.T46T	NM_001982	NP_001973	P21860	ERBB3_HUMAN	erbB-3 isoform 1 precursor	478	Extracellular (Potential).				cranial nerve development|heart development|negative regulation of cell adhesion|negative regulation of neuron apoptosis|negative regulation of secretion|negative regulation of signal transduction|neuron apoptosis|phosphatidylinositol 3-kinase cascade|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of cell proliferation|Schwann cell differentiation|transmembrane receptor protein tyrosine kinase signaling pathway|wound healing	basolateral plasma membrane|extracellular space|integral to plasma membrane|receptor complex	ATP binding|growth factor binding|protein heterodimerization activity|protein homodimerization activity|protein tyrosine kinase activator activity|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(3)|central_nervous_system(2)|stomach(1)|ovary(1)|skin(1)	8			OV - Ovarian serous cystadenocarcinoma(18;0.112)			GGGGGCCTACGGAAGAGCGAC	0.552													8	32					0	0	0.000673444	0	0
MBD6	114785	broad.mit.edu	37	12	57919593	57919593	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:57919593A>C	uc001soj.1	+	6	1066	c.842A>C	c.(841-843)CAC>CCC	p.H281P	MBD6_uc001sok.1_Missense_Mutation_p.H148P|MBD6_uc001sol.1_5'Flank	NM_052897	NP_443129	Q96DN6	MBD6_HUMAN	methyl-CpG binding domain protein 6	281	Pro-rich.					chromosome|nucleus	chromatin binding|DNA binding			central_nervous_system(3)|ovary(1)	4						CTCCCCGCCCACCCTGGTCCT	0.662													3	22					0	0	0.00024832	0	0
PTPRB	5787	broad.mit.edu	37	12	70946574	70946574	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:70946574C>T	uc001swb.3	-	19	4746	c.4716G>A	c.(4714-4716)AAG>AAA	p.K1572K	PTPRB_uc010sto.1_Silent_p.K1482K|PTPRB_uc010stp.1_Silent_p.K1482K|PTPRB_uc001swc.3_Silent_p.K1790K|PTPRB_uc001swa.3_Silent_p.K1702K	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1572	Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CAGTGTGTGGCTTCAGTGGTC	0.453													8	37					0	0	0.000442599	0	0
C12orf50	160419	broad.mit.edu	37	12	88379685	88379685	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:88379685C>T	uc001tam.1	-	11	1236	c.1068G>A	c.(1066-1068)ACG>ACA	p.T356T	C12orf50_uc001tan.2_Silent_p.T371T	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	356								p.T356A(1)		skin(2)|ovary(1)	3						AGGACCCATGCGTGGGCCTGC	0.478													17	75					0	0	0.00074312	0	0
C12orf42	374470	broad.mit.edu	37	12	103795449	103795449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:103795449G>A	uc001tjt.2	-	3	171	c.83C>T	c.(82-84)TCC>TTC	p.S28F	C12orf42_uc001tjs.2_RNA|C12orf42_uc009zuf.1_Missense_Mutation_p.S28F|C12orf42_uc001tju.2_5'UTR	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	28								p.S28S(1)		ovary(1)|central_nervous_system(1)	2						ATAGCAAGGGGATTTCTGAAA	0.433													8	26					0	0	6.40141e-05	0	0
STAB2	55576	broad.mit.edu	37	12	104142808	104142808	+	Silent	SNP	G	A	A	rs151012888		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:104142808G>A	uc001tjw.2	+	59	6498	c.6312G>A	c.(6310-6312)ACG>ACA	p.T2104T	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	2104	Extracellular (Potential).|EGF-like 16.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AGAAGGGCACGAAGGTCTCCT	0.582													10	26					0	0	6.40141e-05	0	0
KIAA1033	23325	broad.mit.edu	37	12	105520090	105520090	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:105520090C>T	uc001tld.2	+	12	1075	c.988C>T	c.(988-990)CGA>TGA	p.R330*	KIAA1033_uc010swr.1_Nonsense_Mutation_p.R330*|KIAA1033_uc010sws.1_Nonsense_Mutation_p.R142*	NM_015275	NP_056090	Q2M389	WAHS7_HUMAN	hypothetical protein LOC23325	330					endosome transport	WASH complex				kidney(1)|central_nervous_system(1)	2						TCAGATTTTTCGAACTATTGA	0.299													33	88					0	0	0.000409698	0	0
CMKLR1	1240	broad.mit.edu	37	12	108686256	108686256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:108686256C>T	uc009zuw.2	-	3	675	c.484G>A	c.(484-486)GTC>ATC	p.V162I	CMKLR1_uc001tmw.2_Missense_Mutation_p.V162I|CMKLR1_uc001tmv.2_Missense_Mutation_p.V160I|CMKLR1_uc009zuv.2_Missense_Mutation_p.V162I	NM_001142345	NP_001135817	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a	162	Helical; Name=4; (Potential).				chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity			lung(3)|ovary(1)|pancreas(1)	5						ACCCAGATGACCATGCAGGCC	0.562													18	49					0	0	0.000229342	0	0
SSH1	54434	broad.mit.edu	37	12	109186337	109186337	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:109186337G>A	uc001tnm.2	-	14	1705	c.1618C>T	c.(1618-1620)CTG>TTG	p.L540L	SSH1_uc001tnl.2_Silent_p.L228L|SSH1_uc010sxg.1_Silent_p.L551L|SSH1_uc001tnn.3_Silent_p.L540L	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	540					actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						TCCTCCAACAGAGCCTCCCTC	0.602													18	58					0	0	0.000175454	0	0
DNAH10	196385	broad.mit.edu	37	12	124352501	124352501	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:124352501G>C	uc001uft.3	+	42	7025	c.7000G>C	c.(7000-7002)GAC>CAC	p.D2334H		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2334					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AGAAATAGAAGACCTTGACCT	0.483													4	21					0	0	0.000602214	0	0
UBC	7316	broad.mit.edu	37	12	125396503	125396503	+	Silent	SNP	G	A	A	rs6657		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:125396503G>A	uc001ugs.3	-	2	2263	c.1815C>T	c.(1813-1815)CTC>CTT	p.L605L	UBC_uc001ugr.2_RNA|UBC_uc001ugu.1_Silent_p.L529L|UBC_uc001ugt.2_Silent_p.L453L|UBC_uc001ugv.2_Intron	NM_021009	NP_066289	P0CG48	UBC_HUMAN	ubiquitin C	605	Ubiquitin-like 8.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		TCCCACCTCTGAGACGGAGCA	0.537													6	80					0	0	8.12818e-05	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138177	126138177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:126138177C>T	uc001uhe.1	+	9	2166	c.2158C>T	c.(2158-2160)CCT>TCT	p.P720S	TMEM132B_uc001uhf.1_Missense_Mutation_p.P232S	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	720	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		CATTTACGATCCTAAGGATTA	0.403													27	111					0	0	0.000720815	0	0
GLT1D1	144423	broad.mit.edu	37	12	129442122	129442122	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr12:129442122G>A	uc010tbh.1	+	12	837	c.828G>A	c.(826-828)AGG>AGA	p.R276R	GLT1D1_uc001uhx.1_Silent_p.R191R|GLT1D1_uc001uhy.1_RNA	NM_144669	NP_653270	Q96MS3	GL1D1_HUMAN	glycosyltransferase 1 domain containing 1	271					biosynthetic process	extracellular region	transferase activity, transferring glycosyl groups				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.97e-06)|Epithelial(86;3.97e-05)|all cancers(50;0.00019)		TATTGGCCAGGAACATCCCCG	0.507													6	27					0	0	0.000274275	0	0
TPTE2	93492	broad.mit.edu	37	13	20025323	20025323	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr13:20025323G>A	uc001umd.2	-	12	995	c.784C>T	c.(784-786)CGA>TGA	p.R262*	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Nonsense_Mutation_p.R151*|TPTE2_uc001ume.2_Nonsense_Mutation_p.R185*|TPTE2_uc009zzm.2_Intron|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	262	Phosphatase tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		TTGTAGACTCGATAGTGGTTT	0.338													13	49					0	0	0.000422831	0	0
NUPL1	9818	broad.mit.edu	37	13	25901094	25901094	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr13:25901094C>T	uc001uqi.2	+	11	1318	c.1072C>T	c.(1072-1074)CAG>TAG	p.Q358*	NUPL1_uc001uqg.1_Nonsense_Mutation_p.Q358*|NUPL1_uc001uqj.2_Nonsense_Mutation_p.Q346*	NM_014089	NP_054808	Q9BVL2	NUPL1_HUMAN	nucleoporin like 1 isoform a	358	14 X 2 AA repeats of F-G.|Potential.				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore					0		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.0092)|Epithelial(112;0.0477)|OV - Ovarian serous cystadenocarcinoma(117;0.165)|GBM - Glioblastoma multiforme(144;0.244)		GGTACAGCTTCAGCAGTACAG	0.328													18	68					0	0	0.00074312	0	0
RXFP2	122042	broad.mit.edu	37	13	32366925	32366925	+	Missense_Mutation	SNP	C	T	T	rs150335466		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr13:32366925C>T	uc001utt.2	+	16	1557	c.1486C>T	c.(1486-1488)CGC>TGC	p.R496C	RXFP2_uc010aba.2_Missense_Mutation_p.R455C	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	496	Helical; Name=3; (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		CGTGCAGTGCCGCCTCATGGG	0.498													9	51					0	0	0.000274275	0	0
COL4A1	1282	broad.mit.edu	37	13	110857736	110857736	+	Silent	SNP	G	A	A	rs138809869		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr13:110857736G>A	uc001vqw.3	-	17	1043	c.921C>T	c.(919-921)CCC>CCT	p.P307P	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	307	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CTGGGTACCCGGGTTCACCAG	0.512													14	43					0	0	0.000566183	0	0
C13orf35	400165	broad.mit.edu	37	13	113333799	113333799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr13:113333799G>A	uc001vsh.1	+	2	864	c.106G>A	c.(106-108)GAC>AAC	p.D36N		NM_207440	NP_997323	Q6ZP68	CM035_HUMAN	hypothetical protein LOC400165	36								p.D36Y(1)		ovary(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)		all cancers(43;0.201)			CCTGAAGATGGACCCGGCAGG	0.617													7	15					0	0	8.12818e-05	0	0
AKAP6	9472	broad.mit.edu	37	14	33201740	33201740	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr14:33201740C>T	uc001wrq.2	+	10	3251	c.3081C>T	c.(3079-3081)GGC>GGT	p.G1027G	AKAP6_uc010aml.2_Silent_p.G1024G	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1027					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		AGAAAGGTGGCGTTTTACTAC	0.363													13	52					0	0	0.000151284	0	0
SOS2	6655	broad.mit.edu	37	14	50623718	50623718	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr14:50623718T>C	uc001wxs.3	-	12	2154	c.2056A>G	c.(2056-2058)AGG>GGG	p.R686G	SOS2_uc010tql.1_Missense_Mutation_p.R653G|SOS2_uc010tqm.1_RNA|SOS2_uc001wxt.2_Missense_Mutation_p.R374G	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	686	N-terminal Ras-GEF.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					AAGCCAAACCTAAGTTGTACT	0.313													4	2					0	0	0.00024832	0	0
EIF2S1	1965	broad.mit.edu	37	14	67831653	67831653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr14:67831653C>T	uc001xjg.2	+	2	310	c.169C>T	c.(169-171)CGT>TGT	p.R57C		NM_004094	NP_004085	P05198	IF2A_HUMAN	eukaryotic translation initiation factor 2,	57	S1 motif.					cytosol|eukaryotic translation initiation factor 2 complex|polysome|stress granule	protein binding|ribosome binding|translation initiation factor activity			ovary(1)	1				all cancers(60;0.000683)|OV - Ovarian serous cystadenocarcinoma(108;0.00579)|BRCA - Breast invasive adenocarcinoma(234;0.00937)		AAGGCGTATCCGTTCTATCAA	0.393													19	82					0	0	0.000295444	0	0
MAP3K9	4293	broad.mit.edu	37	14	71197118	71197118	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr14:71197118G>A	uc001xmm.2	-	12	3294	c.3294C>T	c.(3292-3294)ATC>ATT	p.I1098I	MAP3K9_uc010ttk.1_Silent_p.I826I|MAP3K9_uc001xmk.2_Silent_p.I831I|MAP3K9_uc001xml.2_Silent_p.I1112I	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	1098					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		ACTCCTGCTGGATCTCATAAG	0.627													9	34					0	0	0.000442599	0	0
LTBP2	4053	broad.mit.edu	37	14	74969553	74969553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr14:74969553C>T	uc001xqa.2	-	34	5360	c.4973G>A	c.(4972-4974)GGC>GAC	p.G1658D		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1658					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GGGCCCGGGGCCATACTCATA	0.647													5	26					0	0	8.12818e-05	0	0
MLH3	27030	broad.mit.edu	37	14	75497287	75497287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr14:75497287G>A	uc001xrd.1	-	9	4162	c.3946C>T	c.(3946-3948)CTT>TTT	p.L1316F	MLH3_uc001xre.1_Missense_Mutation_p.L1292F|MLH3_uc010tuy.1_RNA	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	1316					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		CCTCTCCGAAGTTCATTGGCT	0.423								MMR					26	110					0	0	0.000409698	0	0
NRXN3	9369	broad.mit.edu	37	14	79181466	79181466	+	Silent	SNP	A	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr14:79181466A>G	uc001xun.2	+	5	1400	c.909A>G	c.(907-909)GGA>GGG	p.G303G	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.G437G	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	676	EGF-like 2.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GATACTGGGGAAGAACCTGCG	0.592													5	28					0	0	3.59834e-05	0	0
BTBD7	55727	broad.mit.edu	37	14	93712229	93712229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr14:93712229G>A	uc001ybo.2	-	10	2851	c.2525C>T	c.(2524-2526)GCC>GTC	p.A842V	BTBD7_uc010aur.2_Missense_Mutation_p.A367V|BTBD7_uc010two.1_Missense_Mutation_p.A662V|BTBD7_uc001ybp.2_Missense_Mutation_p.A491V	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	842										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		GGTGGTGGCGGCAGCAGCAGC	0.468													6	15					0	0	3.59834e-05	0	0
KIAA1409	57578	broad.mit.edu	37	14	94158280	94158280	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr14:94158280C>T	uc001ybv.1	+	45	7193	c.7110C>T	c.(7108-7110)GCC>GCT	p.A2370A	KIAA1409_uc001ybs.1_Silent_p.A2348A	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2525						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		AGCTAATGGCCCATAACAAAG	0.453													15	60					0	0	0.00074312	0	0
SERPINA11	256394	broad.mit.edu	37	14	94912689	94912689	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr14:94912689C>A	uc001ydd.1	-	3	956	c.896G>T	c.(895-897)TGG>TTG	p.W299L		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	299					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		CAATTGGCCCCATTTTCTCAG	0.552													16	51					3.52763e-06	4.08764e-05	0.000566183	1	0
TCL6	27004	broad.mit.edu	37	14	96129885	96129885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr14:96129885C>T	uc001yeq.2	+	4	1573	c.104C>T	c.(103-105)GCT>GTT	p.A35V	TCL6_uc001yep.1_RNA|TCL6_uc001yes.2_5'UTR|TCL6_uc001yet.1_5'UTR|TCL6_uc001yeu.2_5'UTR|TCL6_uc001yev.2_5'UTR|TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA	NM_020554	NP_065579			SubName: Full=T-cell leukemia/lymphoma 6 ORF163;												0		all_cancers(154;0.103)		Epithelial(152;0.0655)|all cancers(159;0.149)|BRCA - Breast invasive adenocarcinoma(234;0.206)|COAD - Colon adenocarcinoma(157;0.207)		tgtttTCATGCTATCTCAGTT	0.264			T	TRA@	T-ALL								7	33					0	0	0.000274275	0	0
ADAM6	8755	broad.mit.edu	37	14	106552520	106552520	+	RNA	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr14:106552520G>A	uc010tyt.1	-	1447		c.30315C>T								Parts of antibodies, mostly variable regions.												0						GGCTGCACAGGAGAGTCTCAG	0.562													7	59					0	0	8.12818e-05	0	0
ADAM6	8755	broad.mit.edu	37	14	107170347	107170347	+	RNA	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr14:107170347G>A	uc010tyt.1	-	37		c.2522C>T								Parts of antibodies, mostly variable regions.												0						CCACAAAGAGGAACCTCCAGG	0.507													9	68					0	0	0.000442599	0	0
GABRB3	2562	broad.mit.edu	37	15	27184496	27184496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr15:27184496C>T	uc001zbb.2	-	1	191	c.88G>A	c.(88-90)GGC>AGC	p.G30S	GABRA5_uc001zbd.1_Intron	NM_021912	NP_068712	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	Error:Variant_position_missing_in_P28472_after_alignment					synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	AATGAAATGCCCCCGATTTCA	0.577													6	47					0	0	0.000274275	0	0
CYP19A1	1588	broad.mit.edu	37	15	51535100	51535100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr15:51535100C>T	uc001zyz.3	-	3	261	c.10G>A	c.(10-12)GAA>AAA	p.E4K	CYP19A1_uc001zza.3_Missense_Mutation_p.E4K|CYP19A1_uc001zzb.2_Missense_Mutation_p.E4K|CYP19A1_uc001zzd.2_Missense_Mutation_p.E4K|CYP19A1_uc010bey.1_Missense_Mutation_p.E4K|CYP19A1_uc001zze.1_RNA	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	4					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	TTCAGCATTTCCAAAACCATC	0.468													25	101					0	0	0.000184323	0	0
UNC13C	440279	broad.mit.edu	37	15	54305845	54305845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr15:54305845G>A	uc002ack.2	+	1	745	c.745G>A	c.(745-747)GAA>AAA	p.E249K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	249					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GATCTTTAAGGAACTTCAGGG	0.468													16	49					0	0	9.7654e-05	0	0
RFX7	64864	broad.mit.edu	37	15	56387736	56387736	+	Silent	SNP	T	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr15:56387736T>C	uc010bfn.2	-	9	2190	c.2190A>G	c.(2188-2190)CAA>CAG	p.Q730Q	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Silent_p.Q544Q	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	633					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						AATTCAAGGGTTGATTTGCTC	0.413													10	40					0	0	6.40141e-05	0	0
UACA	55075	broad.mit.edu	37	15	70960302	70960302	+	Silent	SNP	T	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr15:70960302T>C	uc002asr.2	-	16	2825	c.2721A>G	c.(2719-2721)TTA>TTG	p.L907L	UACA_uc010uke.1_Silent_p.L798L|UACA_uc002asq.2_Silent_p.L894L|UACA_uc010bin.1_Silent_p.L882L	NM_018003	NP_060473	Q9BZF9	UACA_HUMAN	uveal autoantigen with coiled-coil domains and	907	Potential.					cytoskeleton|extracellular region				ovary(2)|pancreas(1)|skin(1)	4						GGTTTCTTTTTAATATTTCAT	0.338													4	30					0	0	0.00024832	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79058684	79058684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr15:79058684G>A	uc002bej.3	-	19	3780	c.3569C>T	c.(3568-3570)CCT>CTT	p.P1190L	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1190					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						TTGGCTCTCAGGGGTGGCAGG	0.602													4	22					0	0	0.00024832	0	0
KIAA1024	23251	broad.mit.edu	37	15	79749360	79749360	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr15:79749360C>T	uc002bew.1	+	2	946	c.871C>T	c.(871-873)CGA>TGA	p.R291*	KIAA1024_uc010unk.1_Nonsense_Mutation_p.R291*	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	291						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						ACCCCAGAGTCGAAAGGAACC	0.488													18	72					0	0	0.000132079	0	0
FES	2242	broad.mit.edu	37	15	91430500	91430500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr15:91430500G>A	uc002bpv.2	+	5	664	c.568G>A	c.(568-570)GTG>ATG	p.V190M	FES_uc010uqj.1_Missense_Mutation_p.V132M|FES_uc010uqk.1_Missense_Mutation_p.V172M|FES_uc002bpw.2_RNA|FES_uc010bny.2_Missense_Mutation_p.V132M|FES_uc002bpx.2_Missense_Mutation_p.V190M|FES_uc002bpy.2_Missense_Mutation_p.V132M	NM_002005	NP_001996	P07332	FES_HUMAN	feline sarcoma oncogene isoform 1	190	Important for interaction with membranes containing phosphoinositides.				axon guidance|cell proliferation|peptidyl-tyrosine phosphorylation	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			TGTGCTGGGCGTGCGGGCTGC	0.627													43	192					0	0	0.000680045	0	0
C16orf91	283951	broad.mit.edu	37	16	1470510	1470510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr16:1470510G>A	uc002clr.2	-	2	157	c.136C>T	c.(136-138)CCT>TCT	p.P46S	C16orf91_uc010uvd.1_Missense_Mutation_p.P203S	NM_001010878	NP_001010878	Q4G0I0	CSMT1_HUMAN	hypothetical protein LOC283951	46	Extracellular (Potential).					integral to membrane					0						GGGCGGTCAGGGTCGTCCTCT	0.657													3	10					0	0	0.00024832	0	0
ACSM2B	348158	broad.mit.edu	37	16	20548615	20548615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr16:20548615C>T	uc002dhj.3	-	15	1909	c.1699G>A	c.(1699-1701)GAG>AAG	p.E567K	ACSM2B_uc002dhk.3_Missense_Mutation_p.E567K	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	567					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						ATCTTCCACTCCTTGTCTCGA	0.478													27	132					0	0	0.000491102	0	0
DNAH3	55567	broad.mit.edu	37	16	21098279	21098279	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr16:21098279G>C	uc010vbe.1	-	19	2768	c.2768C>G	c.(2767-2769)CCC>CGC	p.P923R		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	923	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TAAGCGCCTGGGTGCAGGCAC	0.468													4	171					0	0	0.00024832	0	0
ANKS4B	257629	broad.mit.edu	37	16	21261828	21261828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr16:21261828G>A	uc010bwp.1	+	2	984	c.941G>A	c.(940-942)GGT>GAT	p.G314D	CRYM_uc010bwq.1_Intron	NM_145865	NP_665872	Q8N8V4	ANS4B_HUMAN	harmonin-interacting ankyrin-repeat containing	314										ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0565)		GCTGATGAGGGTGCAGCTGAT	0.502													7	27					0	0	8.12818e-05	0	0
Unknown	0	broad.mit.edu	37	16	31973471	31973471	+	RNA	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr16:31973471C>T	uc002ect.2	+	1		c.63C>T								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H186.																		TGAGACTCTCCTGTGCAGCCT	0.577													19	60					0	0	0.000375601	0	0
Unknown	0	broad.mit.edu	37	16	32264971	32264971	+	RNA	SNP	T	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr16:32264971T>C	uc002ecy.2	+	1		c.328T>C			uc010cav.1_RNA					Homo sapiens mRNA for TP53TG3b, complete cds.																		ATGTTCGAAGTTTGATACCTT	0.562													6	52					0	0	6.40141e-05	0	0
PDP2	57546	broad.mit.edu	37	16	66918893	66918893	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr16:66918893C>T	uc002eqk.1	+	2	868	c.706C>T	c.(706-708)CAG>TAG	p.Q236*		NM_020786	NP_065837	Q9P2J9	PDP2_HUMAN	pyruvate dehydrogenase phosphatase isoenzyme 2	236					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity|metal ion binding			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.088)|Epithelial(162;0.204)		GTACTCCTTCCAGAGACTGGA	0.498													8	36					0	0	0.000274275	0	0
HYDIN	54768	broad.mit.edu	37	16	70926413	70926413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr16:70926413C>T	uc002ezr.2	-	56	9393	c.9265G>A	c.(9265-9267)GGG>AGG	p.G3089R		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3090										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GTTGAAATCCCTACAGAGTCC	0.433													7	24					0	0	6.40141e-05	0	0
PMFBP1	83449	broad.mit.edu	37	16	72170400	72170400	+	Missense_Mutation	SNP	C	G	G	rs149950926	byFrequency	TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr16:72170400C>G	uc002fcc.3	-	9	1322	c.1150G>C	c.(1150-1152)GAG>CAG	p.E384Q	PMFBP1_uc002fcd.2_Missense_Mutation_p.E384Q|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.E239Q	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	384	Potential.									ovary(2)	2		Ovarian(137;0.179)				AGCTGCAGCTCCTGCAGCCGG	0.557													16	51					0	0	9.7654e-05	0	0
WDR59	79726	broad.mit.edu	37	16	74949783	74949783	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr16:74949783C>T	uc002fdh.1	-	13	1311	c.1209G>A	c.(1207-1209)CGG>CGA	p.R403R	WDR59_uc002fdi.2_Silent_p.R403R|WDR59_uc002fdj.2_Silent_p.R403R|WDR59_uc002fdg.1_5'UTR	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	403	RWD.									ovary(1)|breast(1)	2						CATTGACATTCCGGATTTGCA	0.453													10	62					0	0	0.000673444	0	0
GPR172B	55065	broad.mit.edu	37	17	4936279	4936279	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr17:4936279C>T	uc002gap.3	-	5	2033	c.1320G>A	c.(1318-1320)AAG>AAA	p.K440K	GPR172B_uc002gao.3_Silent_p.K440K|GPR172B_uc010ckw.2_Silent_p.K318K|GPR172B_uc010ckx.2_3'UTR	NM_001104577	NP_001098047	Q9NWF4	RFT_HUMAN	G protein-coupled receptor 172B precursor	440						integral to plasma membrane	receptor activity|riboflavin transporter activity				0						CTACACAGTCCTTTCTGCTTT	0.607													6	24					0	0	0.000157383	0	0
SAT2	112483	broad.mit.edu	37	17	7529810	7529810	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr17:7529810G>A	uc002gic.2	-	6	709	c.468C>T	c.(466-468)TTC>TTT	p.F156F	SHBG_uc010cmo.2_Intron|SHBG_uc010cmp.2_Intron|SHBG_uc010cmq.2_Intron|SHBG_uc010cmr.2_Intron|SHBG_uc010cms.2_Intron|SHBG_uc010cmt.2_Intron|SHBG_uc010cmu.2_Intron|SAT2_uc002gib.1_RNA|SHBG_uc010cmz.2_5'Flank|SHBG_uc010cmv.2_5'Flank|SHBG_uc010cmw.2_5'Flank|SHBG_uc010cmx.2_5'Flank|SHBG_uc010cmy.2_5'Flank|SHBG_uc002gid.3_5'Flank	NM_133491	NP_597998	Q96F10	SAT2_HUMAN	diamine N-acetyltransferase 2	156	N-acetyltransferase.					cytoplasm	diamine N-acetyltransferase activity	p.?(1)			0				READ - Rectum adenocarcinoma(115;0.166)	Spermine(DB00127)	GAAAGCAGAAGAAGTGCCAGC	0.562													13	44					0	0	0.000151284	0	0
TP53	7157	broad.mit.edu	37	17	7574003	7574004	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr17:7574003_7574004GG>AA	uc002gim.2	-	10	1217_1218	c.1023_1024CC>TT	c.(1021-1026)TTCCGA>TTTTGA	p.R342*	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_Intron|TP53_uc010cnf.1_3'UTR|TP53_uc010cng.1_3'UTR|TP53_uc002gii.1_Nonsense_Mutation_p.R210*|TP53_uc010cnh.1_3'UTR|TP53_uc010cni.1_3'UTR|TP53_uc002gij.2_Nonsense_Mutation_p.R342*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	342	Oligomerization.|Interaction with HIPK1 (By similarity).|Interaction with CARM1.|Nuclear export signal.|Interaction with HIPK2.		R -> P (in sporadic cancers; somatic mutation).|R -> Q (in sporadic cancers; somatic mutation).|R -> L (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R342*(49)|p.0?(7)|p.R342fs*3(5)|p.R342P(3)|p.R342Q(2)|p.?(1)|p.R342_N345delRELN(1)|p.I332fs*5(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TTCAGCTCTCGGAACATCTCGA	0.495		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			5	22					0	0	6.4e-05	0	0
WDR16	146845	broad.mit.edu	37	17	9489185	9489185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr17:9489185G>A	uc002gly.2	+	2	235	c.166G>A	c.(166-168)GAG>AAG	p.E56K	WDR16_uc002glz.2_Intron|WDR16_uc010coc.2_Missense_Mutation_p.E66K	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	56						cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						AAATACTAAAGAGCAGAACTT	0.488													28	74					0	0	0.000184323	0	0
MYH1	4619	broad.mit.edu	37	17	10402091	10402091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr17:10402091C>T	uc002gmo.2	-	30	4127	c.4033G>A	c.(4033-4035)GAC>AAC	p.D1345N	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1345	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CGCAGCAGGTCACAGTCATGG	0.512													13	48					0	0	0.000229342	0	0
MYH1	4619	broad.mit.edu	37	17	10404730	10404730	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr17:10404730C>T	uc002gmo.2	-	27	3529	c.3435G>A	c.(3433-3435)CGG>CGA	p.R1145R	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1145	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CCTCCAGCTCCCGGGAGAGAT	0.607													19	55					0	0	0.000132079	0	0
RICH2	9912	broad.mit.edu	37	17	12812255	12812255	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr17:12812255G>A	uc002gnr.3	+	4	567	c.240G>A	c.(238-240)GAG>GAA	p.E80E	RICH2_uc010vvk.1_Silent_p.E80E|RICH2_uc010vvl.1_Silent_p.E80E|RICH2_uc002gns.3_5'UTR|RICH2_uc010vvm.1_Silent_p.E80E|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	80	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						GTCTGATGGAGGGGTCAGCTA	0.443													30	111					0	0	0.000191422	0	0
LGALS9	3965	broad.mit.edu	37	17	25967705	25967705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr17:25967705G>A	uc002gzp.2	+	3	357	c.239G>A	c.(238-240)GGA>GAA	p.G80E	LGALS9_uc002gzq.2_Missense_Mutation_p.G80E|LGALS9_uc002gzr.2_Missense_Mutation_p.G23E|LGALS9_uc010waa.1_Missense_Mutation_p.G23E|LGALS9_uc002gzs.2_Missense_Mutation_p.G80E	NM_009587	NP_033665	O00182	LEG9_HUMAN	galectin-9 isoform long	80	Galectin 1.			NGS -> KGR (in Ref. 6; CAB93851).	positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	galactose binding|signal transducer activity				0	Lung NSC(42;0.0103)		BRCA - Breast invasive adenocarcinoma(3;0.0141)	UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		AGGCAGAACGGAAGCTGGGGG	0.542													20	53					0	0	0.000175454	0	0
TBC1D3B	414059	broad.mit.edu	37	17	34499220	34499220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr17:34499220C>T	uc002hky.2	-	7	641	c.491G>A	c.(490-492)GGA>GAA	p.G164E	uc002hla.1_5'Flank|uc002hlc.2_5'Flank	NM_001001417	NP_001001417	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3B	164	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0		Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TTACTTGGTTCCGTATCGATC	0.572													30	273					0	0	0.000781405	0	0
KCNH4	23415	broad.mit.edu	37	17	40321597	40321597	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr17:40321597C>G	uc002hzb.2	-	9	1821	c.1488G>C	c.(1486-1488)AAG>AAC	p.K496N		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	496	Helical; Name=Segment S6; (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		GGATGAAGTCCTTGAGGTCCT	0.632													18	29					0	0	0.000566183	0	0
ABCA10	10349	broad.mit.edu	37	17	67149516	67149516	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr17:67149516C>G	uc010dfa.1	-	35	4945	c.4066G>C	c.(4066-4068)GGG>CGG	p.G1356R	ABCA10_uc002jhz.2_5'Flank|ABCA10_uc010wqs.1_Missense_Mutation_p.G348R|ABCA10_uc010wqt.1_RNA	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	1356	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					GATGGGTTCCCCAGGATGCTC	0.572													3	54					0	0	6.4e-05	0	0
EXOC7	23265	broad.mit.edu	37	17	74093999	74093999	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr17:74093999A>G	uc002jqs.2	-	5	613	c.518T>C	c.(517-519)CTG>CCG	p.L173P	EXOC7_uc010dgv.1_Missense_Mutation_p.L120P|EXOC7_uc002jqq.2_Missense_Mutation_p.L173P|EXOC7_uc010wsw.1_Missense_Mutation_p.L173P|EXOC7_uc010wsx.1_Missense_Mutation_p.L173P|EXOC7_uc002jqr.2_Missense_Mutation_p.L173P|EXOC7_uc010wsv.1_Missense_Mutation_p.L132P|EXOC7_uc002jqu.2_Missense_Mutation_p.L173P	NM_001145297	NP_001138769	Q9UPT5	EXOC7_HUMAN	exocyst complex component 7 isoform 4	173					exocytosis|protein transport	centriolar satellite|cytosol|exocyst|plasma membrane	protein binding				0			LUSC - Lung squamous cell carcinoma(166;0.187)			ACCACTGATCAGATCCAAGAT	0.607													3	64					0	0	0.00024832	0	0
DSG4	147409	broad.mit.edu	37	18	28993439	28993439	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr18:28993439C>T	uc002kwq.2	+	16	3139	c.3004C>T	c.(3004-3006)CAA>TAA	p.Q1002*	DSG4_uc002kwr.2_Nonsense_Mutation_p.Q1021*	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	1002	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GCCAGAAATTCAAGTGATGCA	0.488													25	81					0	0	0.000586117	0	0
RIT2	6014	broad.mit.edu	37	18	40695429	40695429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr18:40695429C>T	uc002lav.2	-	1	229	c.56G>A	c.(55-57)AGA>AAA	p.R19K	RIT2_uc010dnf.2_Missense_Mutation_p.R19K	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	19					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						CTTGTACTCTCTGGACCCGCC	0.542													12	68					0	0	0.000308642	0	0
MC4R	4160	broad.mit.edu	37	18	58038851	58038851	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr18:58038851C>T	uc002lie.1	-	1	1151	c.732G>A	c.(730-732)GCG>GCA	p.A244A		NM_005912	NP_005903	P32245	MC4R_HUMAN	melanocortin 4 receptor	244	Cytoplasmic (Potential).				feeding behavior|G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of bone resorption|positive regulation of cAMP biosynthetic process	integral to membrane|plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|ubiquitin protein ligase binding			lung(1)	1		Colorectal(73;0.0946)				TCAAGGTAATCGCTCCCTTCA	0.498													11	32					0	0	0.000673444	0	0
RNF152	220441	broad.mit.edu	37	18	59483555	59483555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr18:59483555C>T	uc002lih.1	-	2	554	c.142G>A	c.(142-144)GAT>AAT	p.D48N		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	48	RING-type.				apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				CACCGCACATCCTTCTGGCTG	0.637													11	20					0	0	0.00010058	0	0
SERPINB3	6317	broad.mit.edu	37	18	61323046	61323046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr18:61323046C>T	uc002lji.2	-	8	1162	c.1018G>A	c.(1018-1020)GGA>AGA	p.G340R	SERPINB4_uc002ljg.2_Intron|SERPINB3_uc010dqa.2_Missense_Mutation_p.G288R	NM_006919	NP_008850	P29508	SPB3_HUMAN	serine (or cysteine) proteinase inhibitor, clade	340					regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GCTTCTGCTCCCTCCTCTGTA	0.507													10	57					0	0	0.000673444	0	0
SBNO2	22904	broad.mit.edu	37	19	1127675	1127675	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:1127675G>A	uc002lrk.3	-	5	607	c.369C>T	c.(367-369)TTC>TTT	p.F123F	SBNO2_uc002lrj.3_Silent_p.F66F|SBNO2_uc010dse.2_Silent_p.F116F|SBNO2_uc010xgj.1_Silent_p.F66F|SBNO2_uc010dsf.2_Silent_p.F66F	NM_014963	NP_055778	Q9Y2G9	SBNO2_HUMAN	strawberry notch homolog 2 isoform 1	123					macrophage activation involved in immune response|negative regulation of transcription, DNA-dependent|regulation of inflammatory response|transcription, DNA-dependent						0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGCCGGCAGGAAGTCGGGCG	0.607													11	39					0	0	6.40141e-05	0	0
CSNK1G2	1455	broad.mit.edu	37	19	1969909	1969910	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:1969909_1969910CC>TT	uc002lul.3	+	3	661_662	c.138_139CC>TT	c.(136-141)TTCCGC>TTTTGC	p.R47C	CSNK1G2_uc010dsu.2_5'UTR	NM_001319	NP_001310	P78368	KC1G2_HUMAN	casein kinase 1, gamma 2	47	Protein kinase.				sphingolipid metabolic process|Wnt receptor signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity			stomach(1)	1		Ovarian(11;2.11e-07)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCCCAACTTCCGCGTCGGCAA	0.718													9	28					0	0	6.4e-05	0	0
TMIGD2	126259	broad.mit.edu	37	19	4294776	4294776	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:4294776G>A	uc002lzx.1	-	3	490	c.444C>T	c.(442-444)TTC>TTT	p.F148F	TMIGD2_uc010dtv.1_Silent_p.F148F	NM_144615	NP_653216	Q96BF3	TMIG2_HUMAN	transmembrane and immunoglobulin domain	148	Extracellular (Potential).					integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0339)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTCACCTGGGAAGCTTGCGA	0.557													6	19					0	0	3.59834e-05	0	0
FSD1	79187	broad.mit.edu	37	19	4311957	4311957	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:4311957G>A	uc002lzy.2	+	7	762	c.609G>A	c.(607-609)CGG>CGA	p.R203R	FSD1_uc002lzz.2_Silent_p.R203R|FSD1_uc002maa.2_Silent_p.R16R	NM_024333	NP_077309	Q9BTV5	FSD1_HUMAN	fibronectin type III and SPRY domain containing	203	Fibronectin type-III.				cell division|mitosis	cleavage furrow|microtubule|microtubule organizing center|nucleus				skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.034)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGAGTACCGGCGGACCAACT	0.622													9	16					0	0	0.000442599	0	0
CHAF1A	10036	broad.mit.edu	37	19	4409284	4409284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:4409284C>T	uc002mal.2	+	3	588	c.488C>T	c.(487-489)GCC>GTC	p.A163V		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	163	Binds to CBX1 chromo shadow domain.				cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		TTGTTGAAGGCCATTCAGAAC	0.517								Chromatin_Structure					27	76					0	0	0.000878237	0	0
VAV1	7409	broad.mit.edu	37	19	6825082	6825082	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:6825082C>G	uc002mfu.1	+	7	770	c.673C>G	c.(673-675)CAA>GAA	p.Q225E	VAV1_uc010xjh.1_Missense_Mutation_p.Q193E|VAV1_uc010dva.1_Missense_Mutation_p.Q225E|VAV1_uc002mfv.1_Missense_Mutation_p.Q170E	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	225	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						GAAGCCCCTGCAACGGTTCCT	0.463													21	94					0	0	0.000720815	0	0
MUC16	94025	broad.mit.edu	37	19	9059806	9059806	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:9059806T>C	uc002mkp.2	-	3	27844	c.27640A>G	c.(27640-27642)ACT>GCT	p.T9214A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9216	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGACTTCAGTGATGGCCAGT	0.488													17	59					0	0	0.000229342	0	0
MUC16	94025	broad.mit.edu	37	19	9066158	9066158	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:9066158G>A	uc002mkp.2	-	3	21492	c.21288C>T	c.(21286-21288)CTC>CTT	p.L7096L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7098	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCAGGGAAGGGAGAGAGCTGG	0.512													8	41					0	0	0.000274275	0	0
MUC16	94025	broad.mit.edu	37	19	9091402	9091402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:9091402C>T	uc002mkp.2	-	1	617	c.413G>A	c.(412-414)GGA>GAA	p.G138E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	138	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTAAAATTTCCTTCTGTGGA	0.493													8	37					0	0	0.000274275	0	0
OR7D2	162998	broad.mit.edu	37	19	9297154	9297154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:9297154G>A	uc002mkz.1	+	1	885	c.697G>A	c.(697-699)GGA>AGA	p.G233R		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	233	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						CTCATCTGGGGGAAAACAAAA	0.468													12	33					0	0	6.40141e-05	0	0
EPHX3	79852	broad.mit.edu	37	19	15338647	15338647	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:15338647G>A	uc002nap.2	-	6	1001	c.792C>T	c.(790-792)TTC>TTT	p.F264F	EPHX3_uc002naq.2_Silent_p.F264F	NM_024794	NP_079070	Q9H6B9	EPHX3_HUMAN	abhydrolase domain containing 9 precursor	264						extracellular region	hydrolase activity				0						AGTTATAAAGGAAGGCCTCGA	0.552													4	23					0	0	0.000157383	0	0
OR10H1	26539	broad.mit.edu	37	19	15918195	15918195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:15918195G>A	uc002nbq.2	-	1	742	c.653C>T	c.(652-654)TCC>TTC	p.S218F		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	218	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GAAGGCATAGGAGAGGAGGAT	0.577													7	41					0	0	0.000442599	0	0
AP1M1	8907	broad.mit.edu	37	19	16338471	16338471	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:16338471C>T	uc002ndu.2	+	7	959	c.786C>T	c.(784-786)TTC>TTT	p.F262F	AP1M1_uc002ndv.2_Silent_p.F274F|AP1M1_uc010xpd.1_Silent_p.F262F	NM_032493	NP_115882	Q9BXS5	AP1M1_HUMAN	adaptor-related protein complex 1, mu 1 subunit	262	MHD.				cellular membrane organization|endosome to melanosome transport|interspecies interaction between organisms|intracellular protein transport|melanosome organization|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(3)|breast(1)	4						ACGGCGAGTTCGAGCTCATGT	0.612													38	128					0	0	0.000589545	0	0
NCAN	1463	broad.mit.edu	37	19	19339385	19339385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:19339385G>A	uc002nlz.2	+	8	3055	c.2956G>A	c.(2956-2958)GAG>AAG	p.E986K	NCAN_uc010ecc.1_Missense_Mutation_p.E550K	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	986					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CTTCTGGGAGGAGGTGGCAAG	0.642													9	29					0	0	0.000274275	0	0
ZNF257	113835	broad.mit.edu	37	19	22271151	22271151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:22271151C>T	uc010ecx.2	+	4	768	c.599C>T	c.(598-600)TCC>TTC	p.S200F	ZNF257_uc010ecy.2_Missense_Mutation_p.S168F	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	200					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				AGAGAGAATTCCCACAAATGT	0.373													12	59					0	0	0.000308642	0	0
ZNF99	7652	broad.mit.edu	37	19	22939400	22939400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:22939400G>A	uc010xrh.1	-	7	2771	c.2771C>T	c.(2770-2772)GCT>GTT	p.A924V		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTGCTTAAAAGCTTTGCCACA	0.368													15	58					0	0	0.000422831	0	0
ZNF99	7652	broad.mit.edu	37	19	22941129	22941129	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:22941129T>G	uc010xrh.1	-	5	1309	c.1309A>C	c.(1309-1311)AAG>CAG	p.K437Q		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TGAATTATCTTATGTTTTCTA	0.333													3	90					0	0	0.00024832	0	0
ZNF792	126375	broad.mit.edu	37	19	35449944	35449944	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:35449944T>C	uc002nxh.1	-	4	1202	c.815A>G	c.(814-816)CAC>CGC	p.H272R		NM_175872	NP_787068	Q3KQV3	ZN792_HUMAN	zinc finger protein 792	272	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;4.18e-08)|Lung NSC(56;6.62e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			GATTCTCTGGTGCTGAACAAG	0.463													15	53					0	0	0.000132079	0	0
RBM42	79171	broad.mit.edu	37	19	36124009	36124009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:36124009C>T	uc002oan.2	+	6	615	c.539C>T	c.(538-540)CCC>CTC	p.P180L	RBM42_uc010eef.2_Missense_Mutation_p.P126L|RBM42_uc002oao.2_Missense_Mutation_p.P158L|RBM42_uc002oap.2_Missense_Mutation_p.P150L|RBM42_uc002oaq.2_Missense_Mutation_p.P151L|RBM42_uc010eeg.2_Missense_Mutation_p.P151L	NM_024321	NP_077297	Q9BTD8	RBM42_HUMAN	RNA binding motif protein 42	180	Pro-rich.					cytoplasm|nucleus	nucleotide binding|RNA binding				0	all_lung(56;1.58e-07)|Lung NSC(56;2.43e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			GCAGCCGGCCCCCGCCCTATG	0.687													23	71					0	0	0.000878237	0	0
ZNF585A	199704	broad.mit.edu	37	19	37643288	37643288	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:37643288G>A	uc002ofo.1	-	5	1744	c.1513C>T	c.(1513-1515)CAG>TAG	p.Q505*	ZNF585A_uc002ofm.1_Nonsense_Mutation_p.Q450*|ZNF585A_uc002ofn.1_Nonsense_Mutation_p.Q450*	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	505	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCTGACCTCTGGGTGAAGGCC	0.423													11	38					0	0	0.00010058	0	0
RYR1	6261	broad.mit.edu	37	19	39003109	39003109	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:39003109G>A	uc002oit.2	+	63	9588	c.9458G>A	c.(9457-9459)GGA>GAA	p.G3153E	RYR1_uc002oiu.2_Missense_Mutation_p.G3153E|RYR1_uc002oiv.1_Missense_Mutation_p.G73E|RYR1_uc010xuf.1_Missense_Mutation_p.G73E	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3153					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CACCAGTTCGGAGATGACGTC	0.637													12	36					0	0	0.000219431	0	0
MEGF8	1954	broad.mit.edu	37	19	42848969	42848969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:42848969C>T	uc002otl.3	+	12	2716	c.2081C>T	c.(2080-2082)ACC>ATC	p.T694I	MEGF8_uc002otm.3_Missense_Mutation_p.T235I	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	763	Extracellular (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				CCGCCCAATACCTCCCAGCCT	0.587													13	49					0	0	0.000219431	0	0
SYNGR4	23546	broad.mit.edu	37	19	48878954	48878954	+	Missense_Mutation	SNP	G	A	A	rs147504195		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:48878954G>A	uc002piz.2	+	4	661	c.416G>A	c.(415-417)GGG>GAG	p.G139E		NM_012451	NP_036583	O95473	SNG4_HUMAN	synaptogyrin 4	139	MARVEL.					integral to membrane					0		all_epithelial(76;5.08e-07)|all_lung(116;5.76e-06)|Lung NSC(112;1.18e-05)|Prostate(7;0.0143)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000138)|all cancers(93;0.00017)|Epithelial(262;0.0138)|GBM - Glioblastoma multiforme(486;0.0146)		TTCCTCCTGGGGAGCAGCAGT	0.612													11	49					0	0	0.000673444	0	0
CPT1C	126129	broad.mit.edu	37	19	50212081	50212081	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:50212081G>A	uc002ppj.2	+	13	1756	c.1551G>A	c.(1549-1551)TGG>TGA	p.W517*	CPT1C_uc002ppl.3_Nonsense_Mutation_p.W483*|CPT1C_uc002ppi.2_Nonsense_Mutation_p.W434*|CPT1C_uc002ppk.2_Nonsense_Mutation_p.W506*|CPT1C_uc010eng.2_Nonsense_Mutation_p.W517*|CPT1C_uc010enh.2_Nonsense_Mutation_p.W517*|CPT1C_uc010ybc.1_Nonsense_Mutation_p.W388*|CPT1C_uc010eni.1_Nonsense_Mutation_p.W174*	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	517	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		GGCTGCAATGGGACCTTCCAG	0.478													8	24					0	0	0.000274275	0	0
MYH14	79784	broad.mit.edu	37	19	50764788	50764788	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:50764788C>A	uc002prr.1	+	19	2405	c.2358C>A	c.(2356-2358)TTC>TTA	p.F786L	MYH14_uc010enu.1_Missense_Mutation_p.F827L|MYH14_uc002prq.1_Missense_Mutation_p.F794L	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	786	Myosin head-like.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		GCAAGATCTTCTTCCGGGCTG	0.627													9	25					1.58986e-06	1.8461e-05	0.000673444	1	0
POLD1	5424	broad.mit.edu	37	19	50905595	50905595	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:50905595C>T	uc002psb.3	+	6	779	c.723C>T	c.(721-723)TTC>TTT	p.F241F	POLD1_uc002psc.3_Silent_p.F241F|POLD1_uc010enx.2_RNA|POLD1_uc010eny.2_Silent_p.F241F	NM_002691	NP_002682	P28340	DPOD1_HUMAN	DNA-directed DNA polymerase delta 1	241					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|response to UV|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm|nucleotide-excision repair complex	3'-5'-exodeoxyribonuclease activity|chromatin binding|DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding|protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		all_neural(266;0.0571)		OV - Ovarian serous cystadenocarcinoma(262;0.00794)|GBM - Glioblastoma multiforme(134;0.0195)		CGCCCAGCTTCGCGCCCTACG	0.701								DNA_polymerases_(catalytic_subunits)					9	33					0	0	6.40141e-05	0	0
C19orf63	284361	broad.mit.edu	37	19	50983459	50983459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:50983459C>T	uc002psl.2	+	4	455	c.389C>T	c.(388-390)TCC>TTC	p.S130F	C19orf63_uc002psj.2_Missense_Mutation_p.S130F|C19orf63_uc002psk.2_Missense_Mutation_p.S130F	NM_206538	NP_996261	Q5UCC4	INM02_HUMAN	hematopoietic signal peptide-containing isoform	130	Extracellular (Potential).					extracellular region|integral to membrane					0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00733)|GBM - Glioblastoma multiforme(134;0.0252)		TATGTCTCCTCCTTTGTCCCT	0.642													6	15					0	0	0.000157383	0	0
GPR32	2854	broad.mit.edu	37	19	51274920	51274920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:51274920C>T	uc010ycf.1	+	1	1063	c.1063C>T	c.(1063-1065)CGG>TGG	p.R355W		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	355	Cytoplasmic (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		CAACGCCCCCCGGGAATGATG	0.522													10	57					0	0	6.40141e-05	0	0
HAS1	3036	broad.mit.edu	37	19	52220364	52220364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:52220364G>A	uc002pxo.1	-	3	820	c.785C>T	c.(784-786)GCT>GTT	p.A262V	HAS1_uc010epc.1_5'UTR|HAS1_uc010epd.1_Missense_Mutation_p.A227V|HAS1_uc002pxn.1_Missense_Mutation_p.A269V|HAS1_uc002pxp.1_Missense_Mutation_p.A261V	NM_001523	NP_001514	Q92839	HAS1_HUMAN	hyaluronan synthase 1	262	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	hyaluronan synthase activity|protein binding			ovary(1)|pancreas(1)	2		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00102)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		CCCACCAACAGCCCCTACCCG	0.617													6	40					0	0	0.000157383	0	0
FPR1	2357	broad.mit.edu	37	19	52249583	52249583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:52249583C>T	uc002pxq.2	-	2	760	c.665G>A	c.(664-666)GGG>GAG	p.G222E		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	222	Helical; Name=5; (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	GGCAATAAGCCCATAACTGAC	0.522													19	51					0	0	9.7654e-05	0	0
ZNF613	79898	broad.mit.edu	37	19	52448381	52448381	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:52448381C>T	uc002pxz.1	+	6	1668	c.1245C>T	c.(1243-1245)CTC>CTT	p.L415L	ZNF613_uc002pya.1_Silent_p.L379L	NM_001031721	NP_001026891	Q6PF04	ZN613_HUMAN	zinc finger protein 613 isoform 1	415	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.0183)		AGGGCAACCTCCTTATTCATC	0.408													16	26					0	0	0.000422831	0	0
ZNF578	147660	broad.mit.edu	37	19	53007926	53007926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:53007926G>A	uc002pzp.3	+	5	326	c.82G>A	c.(82-84)GAT>AAT	p.D28N		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	Error:Variant_position_missing_in_Q96N58_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		GACTTTCAGGGATGTGGCTAT	0.418													28	160					0	0	0.000339439	0	0
ZNF578	147660	broad.mit.edu	37	19	53014555	53014555	+	Silent	SNP	A	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:53014555A>G	uc002pzp.3	+	6	1165	c.921A>G	c.(919-921)AGA>AGG	p.R307R		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	82	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		GCCATCGTAGATGTCACACTG	0.433													4	104					0	0	0.00024832	0	0
VN1R4	317703	broad.mit.edu	37	19	53770583	53770583	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:53770583C>T	uc010ydu.1	-	1	336	c.336G>A	c.(334-336)AGG>AGA	p.R112R		NM_173857	NP_776256	Q7Z5H5	VN1R4_HUMAN	vomeronasal 1 receptor 4	112	Cytoplasmic (Potential).				response to pheromone	actin cytoskeleton|cytoplasm|integral to membrane|plasma membrane	pheromone receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.00294)		ACCTGGATTTCCTGGAGCTGA	0.498										HNSCC(26;0.072)			4	10					0	0	0.00024832	0	0
MIR519D	574480	broad.mit.edu	37	19	54216624	54216624	+	RNA	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:54216624G>A	hsa-mir-519d|MI0003162	+			c.24G>A																				0						CCCTCCAAAGGGAAGCGCTTT	0.428													9	89					0	0	0.000442599	0	0
LILRA1	11024	broad.mit.edu	37	19	55107668	55107668	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:55107668A>G	uc002qgh.1	+	7	1155	c.973A>G	c.(973-975)AGA>GGA	p.R325G	LILRA2_uc010yfg.1_Missense_Mutation_p.R323G|LILRA1_uc010yfh.1_Missense_Mutation_p.R325G	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	325	Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		GTTCCGTGGCAGACCCTTCAT	0.607													3	18					0	0	6.4e-05	0	0
NLRP2	55655	broad.mit.edu	37	19	55493003	55493003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:55493003G>A	uc002qij.2	+	5	502	c.416G>A	c.(415-417)GGA>GAA	p.G139E	NLRP2_uc010yfp.1_Missense_Mutation_p.G116E|NLRP2_uc010esn.2_Missense_Mutation_p.G115E|NLRP2_uc010eso.2_Missense_Mutation_p.G136E|NLRP2_uc010esp.2_Intron	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	139					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		GAAACGAAAGGAAATGTCATC	0.323													16	74					0	0	0.000175454	0	0
NLRP11	204801	broad.mit.edu	37	19	56320375	56320375	+	Missense_Mutation	SNP	C	T	T	rs141337326		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:56320375C>T	uc010ygf.1	-	5	2312	c.1601G>A	c.(1600-1602)CGT>CAT	p.R534H	NLRP11_uc002qlz.2_Missense_Mutation_p.R435H|NLRP11_uc002qmb.2_Missense_Mutation_p.R435H|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	534							ATP binding	p.R534C(1)		ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		TTCCGGGTCACGGTCCAAATG	0.453													24	131					0	0	0.000586117	0	0
NLRP4	147945	broad.mit.edu	37	19	56369223	56369223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:56369223G>A	uc002qmd.3	+	3	886	c.464G>A	c.(463-465)GGA>GAA	p.G155E	NLRP4_uc002qmf.2_Missense_Mutation_p.G80E|NLRP4_uc010etf.2_5'UTR	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	155	NACHT.|ATP (Potential).						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		ATCATTCAAGGACCACAAGGA	0.468													31	80					0	0	0.000409698	0	0
ZNF667	63934	broad.mit.edu	37	19	56953852	56953852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:56953852G>A	uc002qnd.2	-	5	674	c.512C>T	c.(511-513)CCT>CTT	p.P171L	ZNF667_uc010etl.2_5'UTR|ZNF667_uc002qne.2_Missense_Mutation_p.P171L|ZNF667_uc010etm.2_Missense_Mutation_p.P114L	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	171					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		GCATTCAAAAGGCTTCTCTCC	0.363													11	49					0	0	0.000673444	0	0
PEG3	5178	broad.mit.edu	37	19	57327997	57327997	+	Missense_Mutation	SNP	C	T	T	rs55885735	byFrequency	TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:57327997C>T	uc002qnu.2	-	7	2164	c.1813G>A	c.(1813-1815)GGG>AGG	p.G605R	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.G576R|PEG3_uc002qnv.2_Missense_Mutation_p.G605R|PEG3_uc002qnw.2_Missense_Mutation_p.G481R|PEG3_uc002qnx.2_Missense_Mutation_p.G479R|PEG3_uc010etr.2_Missense_Mutation_p.G605R	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	605					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		AAGGTTTCCCCGCGCtcacgt	0.378													11	10					0	0	6.40141e-05	0	0
ZNF586	54807	broad.mit.edu	37	19	58287975	58287975	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr19:58287975A>T	uc002qqd.2	+	2	287	c.101A>T	c.(100-102)GAG>GTG	p.E34V	ZNF587_uc002qqb.2_Intron|ZNF586_uc002qqe.2_Intron|ZNF586_uc010euh.2_5'UTR|ZNF586_uc002qqf.1_Intron	NM_017652	NP_060122	Q9NXT0	ZN586_HUMAN	zinc finger protein 586	34	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CTTCTTAATGAGGCTCAGAGA	0.468													25	137					0	0	0.000227799	0	0
SNTG2	54221	broad.mit.edu	37	2	1204872	1204872	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:1204872C>T	uc002qwq.2	+	9	803	c.675C>T	c.(673-675)TCC>TCT	p.S225S	SNTG2_uc010ewi.2_Silent_p.S98S	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	225					central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		TGCCTCTGTCCATGGCTCGCA	0.527													21	79					0	0	0.000375601	0	0
TPO	7173	broad.mit.edu	37	2	1459875	1459875	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:1459875C>G	uc002qww.2	+	7	731	c.640C>G	c.(640-642)CAA>GAA	p.Q214E	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.Q214E|TPO_uc002qwr.2_Missense_Mutation_p.Q214E|TPO_uc002qwx.2_Missense_Mutation_p.Q214E|TPO_uc010yio.1_Missense_Mutation_p.Q214E|TPO_uc010yip.1_Missense_Mutation_p.Q214E	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	214	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	ACATGTCATTCAAGTTTCAAA	0.507													7	17					0	0	0.000673444	0	0
TTC15	51112	broad.mit.edu	37	2	3392122	3392122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:3392122C>T	uc002qxm.1	+	2	934	c.728C>T	c.(727-729)CCG>CTG	p.P243L	TTC15_uc002qxn.1_Missense_Mutation_p.P243L|TTC15_uc010ewm.1_Missense_Mutation_p.P243L|TTC15_uc002qxl.1_Missense_Mutation_p.P243L	NM_016030	NP_057114	Q8WVT3	TTC15_HUMAN	tetratricopeptide repeat domain 15	243							binding			ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.214)		OV - Ovarian serous cystadenocarcinoma(76;0.0402)|Epithelial(75;0.0986)|all cancers(51;0.149)		gcgggctccccggcccccgcc	0.567													6	6					0	0	0.000157383	0	0
TAF1B	9014	broad.mit.edu	37	2	10059866	10059867	+	Nonsense_Mutation	DNP	TC	GT	GT			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:10059866_10059867TC>GT	uc002qzz.2	+	14	1582_1583	c.1482_1483TC>GT	c.(1480-1485)CTTCAG>CTGTAG	p.Q495*	TAF1B_uc002qzy.3_Nonsense_Mutation_p.Q495*|TAF1B_uc010yja.1_Nonsense_Mutation_p.Q240*|TAF1B_uc010exd.2_Nonsense_Mutation_p.Q240*	NM_005680	NP_005671	Q53T94	TAF1B_HUMAN	TBP-associated factor 1B	495					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|breast(1)|pancreas(1)	3	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					GACACAGCCTTCAGGGAGTCCT	0.411													12	25					0	0	6.4e-05	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17696505	17696505	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:17696505C>T	uc002rcl.1	-	1	3202	c.3178G>A	c.(3178-3180)GAA>AAA	p.E1060K	RAD51AP2_uc010exn.1_Missense_Mutation_p.E1051K	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	1060										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TTAGGAACTTCCTGTTCTCCA	0.348													10	26					0	0	0.000442599	0	0
MATN3	4148	broad.mit.edu	37	2	20201770	20201770	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:20201770G>A	uc002rdl.2	-	4	1051	c.988C>T	c.(988-990)CAT>TAT	p.H330Y	MATN3_uc010exu.1_Missense_Mutation_p.H288Y	NM_002381	NP_002372	O15232	MATN3_HUMAN	matrilin 3 precursor	330	EGF-like 2.				skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CACTCACAATGATAAGAGCCA	0.418													8	38					0	0	0.000274275	0	0
APOB	338	broad.mit.edu	37	2	21224871	21224871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:21224871C>T	uc002red.2	-	29	13551	c.13423G>A	c.(13423-13425)GAA>AAA	p.E4475K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4475					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTAATTATTTCCTGAGCAGTG	0.393													106	452					0	0	0.000781405	0	0
HADHA	3030	broad.mit.edu	37	2	26418002	26418002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:26418002C>T	uc002rgy.2	-	15	1709	c.1579G>A	c.(1579-1581)GCA>ACA	p.A527T	HADHA_uc010yks.1_Missense_Mutation_p.A440T	NM_000182	NP_000173	P40939	ECHA_HUMAN	mitochondrial trifunctional protein, alpha	527					fatty acid beta-oxidation	fatty acid beta-oxidation multienzyme complex|mitochondrial nucleoid|nucleolus	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acetyltransferase activity|coenzyme binding|enoyl-CoA hydratase activity|long-chain-3-hydroxyacyl-CoA dehydrogenase activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				NADH(DB00157)	AGACCAACTGCTACAGCTGAA	0.463													24	53					0	0	0.000720815	0	0
CAD	790	broad.mit.edu	37	2	27445437	27445437	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:27445437C>T	uc002rji.2	+	5	708	c.546C>T	c.(544-546)GAC>GAT	p.D182D	CAD_uc010eyw.2_Silent_p.D182D	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	182	Glutamine amidotransferase type-1.|GATase (Glutamine amidotransferase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	TTGCTTTGGACTGTGGCCTCA	0.552													7	31					0	0	0.000274275	0	0
C2orf71	388939	broad.mit.edu	37	2	29294356	29294356	+	Silent	SNP	C	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:29294356C>A	uc002rmt.1	-	1	2772	c.2772G>T	c.(2770-2772)CTG>CTT	p.L924L		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	924					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						GTGGGCTGCTCAGGTCCAGGG	0.672													5	20					0.000602214	0.00686376	0.000602214	1	0
PPM1B	5495	broad.mit.edu	37	2	44428393	44428394	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:44428393_44428394GG>TT	uc002rtt.2	+	2	483_484	c.55_56GG>TT	c.(55-57)GGG>TTG	p.G19L	PPM1B_uc002rts.2_Missense_Mutation_p.G19L|PPM1B_uc002rtu.2_Missense_Mutation_p.G19L|PPM1B_uc002rtv.2_Intron|PPM1B_uc002rtw.2_Missense_Mutation_p.G19L|PPM1B_uc002rtx.2_Missense_Mutation_p.G19L	NM_002706	NP_002697	O75688	PPM1B_HUMAN	protein phosphatase 1B isoform 1	19					protein dephosphorylation	protein serine/threonine phosphatase complex	magnesium ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity			kidney(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				TCATGGTGCTGGGAATGGTTTA	0.406													11	426					0	0	6.4e-05	0	0
ASB3	51130	broad.mit.edu	37	2	53977993	53977993	+	Silent	SNP	G	A	A	rs141354765	byFrequency	TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:53977993G>A	uc002rxg.1	-	3	417	c.282C>T	c.(280-282)ATC>ATT	p.I94I	ASB3_uc002rxh.1_Silent_p.I21I|ASB3_uc002rxi.3_Silent_p.I132I|ASB3_uc010yoo.1_Silent_p.I94I	NM_016115	NP_057199	Q9Y575	ASB3_HUMAN	ankyrin repeat and SOCS box-containing protein 3	94	ANK 3.				intracellular signal transduction					ovary(1)|kidney(1)	2			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			GAATCTGTACGATTTTCCAAT	0.388													10	49					0	0	0.000673444	0	0
AAK1	22848	broad.mit.edu	37	2	69734626	69734626	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:69734626G>A	uc002sfp.2	-	15	2596	c.2091C>T	c.(2089-2091)CCC>CCT	p.P697P	AAK1_uc010fdk.2_Silent_p.P697P|AAK1_uc010yqm.1_Silent_p.P698P	NM_014911	NP_055726	Q2M2I8	AAK1_HUMAN	AP2 associated kinase 1	697						coated pit|mitochondrion|plasma membrane	ATP binding|protein serine/threonine kinase activity				0						CGTCATCAAAGGGATTCCACG	0.468													6	22					0	0	8.12818e-05	0	0
DYSF	8291	broad.mit.edu	37	2	71827952	71827952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:71827952G>A	uc002sie.2	+	34	4199	c.3823G>A	c.(3823-3825)GAG>AAG	p.E1275K	DYSF_uc010feg.2_Missense_Mutation_p.E1306K|DYSF_uc010feh.2_Missense_Mutation_p.E1261K|DYSF_uc002sig.3_Missense_Mutation_p.E1261K|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.E1275K|DYSF_uc010fef.2_Missense_Mutation_p.E1292K|DYSF_uc010fei.2_Missense_Mutation_p.E1292K|DYSF_uc010fek.2_Missense_Mutation_p.E1293K|DYSF_uc010fej.2_Missense_Mutation_p.E1262K|DYSF_uc010fel.2_Missense_Mutation_p.E1262K|DYSF_uc010feo.2_Missense_Mutation_p.E1307K|DYSF_uc010fem.2_Missense_Mutation_p.E1276K|DYSF_uc010fen.2_Missense_Mutation_p.E1293K|DYSF_uc002sif.2_Missense_Mutation_p.E1276K|DYSF_uc010yqy.1_Missense_Mutation_p.E156K|DYSF_uc010yqz.1_5'Flank	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1275	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GGCCTCTTTTGAGCTCATCCA	0.632													10	58					0	0	6.40141e-05	0	0
LRRTM4	80059	broad.mit.edu	37	2	76976028	76976028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:76976028C>T	uc002snr.2	-	4	1981	c.1566G>A	c.(1564-1566)ATG>ATA	p.M522I	LRRTM4_uc002snq.2_Missense_Mutation_p.M522I	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	522	Cytoplasmic (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		GCAAGGGCTTCATGTGGTGTG	0.468													5	21					0	0	8.12818e-05	0	0
DNAH6	1768	broad.mit.edu	37	2	84784929	84784929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:84784929C>T	uc010fgb.2	+	11	1810	c.1673C>T	c.(1672-1674)TCG>TTG	p.S558L	DNAH6_uc002soo.2_Missense_Mutation_p.S137L|DNAH6_uc002sop.2_Missense_Mutation_p.S137L	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	558	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						GTGCCTGATTCGTATTTTGAT	0.378													21	127					0	0	0.000295444	0	0
TCF7L1	83439	broad.mit.edu	37	2	85534770	85534770	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:85534770G>A	uc002soy.2	+	11	1337	c.1263G>A	c.(1261-1263)AAG>AAA	p.K421K		NM_031283	NP_112573	Q9HCS4	TF7L1_HUMAN	HMG-box transcription factor TCF-3	421	Nuclear localization signal (Potential).				chromatin organization|regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|breast(1)|central_nervous_system(1)	3						TCCAGGGTAAGAAAAAGAAGA	0.542													6	24					0	0	3.59834e-05	0	0
Unknown	0	broad.mit.edu	37	2	89476122	89476122	+	RNA	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:89476122C>T	uc010ytr.1	-	28		c.3359G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CCCACTGGATCCTGAAATAAT	0.408													13	68					0	0	0.000422831	0	0
TMEM131	23505	broad.mit.edu	37	2	98453576	98453576	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:98453576G>A	uc002syh.3	-	8	997	c.768C>T	c.(766-768)CTC>CTT	p.L256L	TMEM131_uc010yvg.1_RNA	NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	256						integral to membrane				ovary(4)|central_nervous_system(2)	6						GACCCGTTGGGAGTTCTAGGT	0.438													8	47					0	0	0.000673444	0	0
SLC9A4	389015	broad.mit.edu	37	2	103136335	103136335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:103136335G>A	uc002tbz.3	+	9	2196	c.1739G>A	c.(1738-1740)GGA>GAA	p.G580E		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	580	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						AGGATACAAGGAATCAAAAGA	0.453													6	38					0	0	8.12818e-05	0	0
RGPD3	653489	broad.mit.edu	37	2	107040666	107040666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:107040666C>T	uc010ywi.1	-	20	3814	c.3757G>A	c.(3757-3759)GAT>AAT	p.D1253N		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1253					intracellular transport		binding			ovary(1)	1						TCCCTTAAATCATAGTTATCC	0.433													55	156					0	0	0.000781405	0	0
RGPD4	285190	broad.mit.edu	37	2	108488724	108488724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:108488724G>A	uc010ywk.1	+	20	4346	c.4264G>A	c.(4264-4266)GGG>AGG	p.G1422R	RGPD4_uc002tdu.2_Missense_Mutation_p.G609R|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1422	RanBD1 2.				intracellular transport		binding			skin(2)	2						AAATATGAAAGGGACAGAAAG	0.378													52	226					0	0	0.000781405	0	0
RANBP2	5903	broad.mit.edu	37	2	109384184	109384184	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:109384184G>A	uc002tem.3	+	20	7315	c.7189G>A	c.(7189-7191)GGG>AGG	p.G2397R		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2397	RanBD1 3.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						AAATATGAAAGGGACAGAAAG	0.373													31	573					0	0	0.000692331	0	0
GLI2	2736	broad.mit.edu	37	2	121746665	121746665	+	Missense_Mutation	SNP	G	A	A	rs150597008		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:121746665G>A	uc010flp.2	+	13	3205	c.3175G>A	c.(3175-3177)GAC>AAC	p.D1059N	GLI2_uc002tmq.1_Missense_Mutation_p.D731N|GLI2_uc002tmr.1_Missense_Mutation_p.D714N|GLI2_uc002tmt.3_Missense_Mutation_p.D731N|GLI2_uc002tmu.3_Missense_Mutation_p.D714N	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1059					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				GCCGGAGGACGACCTGGTGCT	0.706													7	24					0	0	0.000157383	0	0
GLI2	2736	broad.mit.edu	37	2	121748014	121748014	+	Silent	SNP	C	T	T	rs139840265	byFrequency	TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:121748014C>T	uc010flp.2	+	13	4554	c.4524C>T	c.(4522-4524)CCC>CCT	p.P1508P	GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Silent_p.P1180P|GLI2_uc002tmu.3_Silent_p.P1163P	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1508					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				TGGAGGCCCCCCAGATTGACT	0.617													16	68					0	0	9.7654e-05	0	0
GLI2	2736	broad.mit.edu	37	2	121748185	121748185	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:121748185C>T	uc010flp.2	+	13	4725	c.4695C>T	c.(4693-4695)GTC>GTT	p.V1565V	GLI2_uc002tmq.1_Missense_Mutation_p.S827L|GLI2_uc002tmr.1_Missense_Mutation_p.S810L|GLI2_uc002tmt.3_Silent_p.V1237V|GLI2_uc002tmu.3_Silent_p.V1220V	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1565					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				ACATGGCTGTCGGGGACATGA	0.642													9	53					0	0	0.000274275	0	0
SAP130	79595	broad.mit.edu	37	2	128750785	128750785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:128750785C>T	uc002tpp.2	-	12	1663	c.1531G>A	c.(1531-1533)GTG>ATG	p.V511M	SAP130_uc002tpn.2_Missense_Mutation_p.V272M|SAP130_uc002tpo.2_Missense_Mutation_p.V256M|SAP130_uc010fmd.2_Missense_Mutation_p.V511M|SAP130_uc002tpq.1_Missense_Mutation_p.V484M	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	511					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		ATAGTGGACACGGAACTGGTG	0.453													18	76					0	0	0.000229342	0	0
RIF1	55183	broad.mit.edu	37	2	152314361	152314361	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:152314361C>T	uc002txm.2	+	24	2869	c.2739C>T	c.(2737-2739)TCC>TCT	p.S913S	RIF1_uc002txl.2_Silent_p.S913S|RIF1_uc002txn.2_Silent_p.S913S|RIF1_uc002txo.2_Silent_p.S913S	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	913					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		AACAACTCTCCCCACTATTAT	0.378													12	64					0	0	6.40141e-05	0	0
XIRP2	129446	broad.mit.edu	37	2	168107012	168107012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:168107012C>T	uc002udx.2	+	8	9128	c.9110C>T	c.(9109-9111)TCC>TTC	p.S3037F	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.S2862F|XIRP2_uc010fpq.2_Missense_Mutation_p.S2815F|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2862					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATGATGTCCTCCAAAACAGGA	0.318													17	53					0	0	0.000175454	0	0
ABCB11	8647	broad.mit.edu	37	2	169780144	169780144	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:169780144G>A	uc002ueo.1	-	28	4080	c.3954C>T	c.(3952-3954)TCC>TCT	p.S1318S	ABCB11_uc010zda.1_Silent_p.S736S|ABCB11_uc010zdb.1_Silent_p.S794S	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1318	Cytoplasmic (Potential).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	AACTGATGGGGGATCCAGTGG	0.478													7	35					0	0	0.000442599	0	0
ZAK	51776	broad.mit.edu	37	2	174096940	174096940	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:174096940C>T	uc002uhz.2	+	13	1253	c.1053C>T	c.(1051-1053)CTC>CTT	p.L351L	uc002uib.2_Intron	NM_016653	NP_057737	Q9NYL2	MLTK_HUMAN	MLK-related kinase isoform 1	351	SAM.				activation of JUN kinase activity|activation of MAPKK activity|cell cycle arrest|cell death|cell differentiation|cell proliferation|DNA damage checkpoint|positive regulation of apoptosis|response to radiation	cytoplasm|nucleus	ATP binding|identical protein binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			lung(3)|stomach(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.176)			TTCAGCAGCTCGTCAGAAAAG	0.378													19	87					0	0	0.000295444	0	0
TTN	7273	broad.mit.edu	37	2	179455686	179455686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:179455686G>A	uc010zfg.1	-	253	53286	c.53062C>T	c.(53062-53064)CCT>TCT	p.P17688S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P11383S|TTN_uc010zfi.1_Missense_Mutation_p.P11316S|TTN_uc010zfj.1_Missense_Mutation_p.P11191S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18615							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAAGGGGAGGACCAACACCT	0.453													24	120					0	0	0.000147802	0	0
TTN	7273	broad.mit.edu	37	2	179457984	179457984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:179457984C>T	uc010zfg.1	-	248	51471	c.51247G>A	c.(51247-51249)GAA>AAA	p.E17083K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E10778K|TTN_uc010zfi.1_Missense_Mutation_p.E10711K|TTN_uc010zfj.1_Missense_Mutation_p.E10586K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18010							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCCGGAATTCATACTGACAT	0.388													36	97					0	0	0.000814825	0	0
TTN	7273	broad.mit.edu	37	2	179500209	179500209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:179500209C>T	uc010zfg.1	-	176	34362	c.34138G>A	c.(34138-34140)GAA>AAA	p.E11380K	TTN_uc010zfh.1_Missense_Mutation_p.E5075K|TTN_uc010zfi.1_Missense_Mutation_p.E5008K|TTN_uc010zfj.1_Missense_Mutation_p.E4883K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12307							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTTCAATTTCCACTGCATAC	0.348													4	8					0	0	0.00024832	0	0
TTN	7273	broad.mit.edu	37	2	179582406	179582406	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:179582406G>A	uc010zfg.1	-	84	21687	c.21463C>T	c.(21463-21465)CTT>TTT	p.L7155F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.L3816F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8082							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTTCAAAAGAACCCCATCC	0.413													5	25					0	0	8.12818e-05	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801225	185801225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:185801225G>A	uc002uph.2	+	4	1696	c.1102G>A	c.(1102-1104)GAT>AAT	p.D368N		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	368						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CATGTCTAATGATTGCATATC	0.388													17	27					0	0	9.7654e-05	0	0
ZNF804A	91752	broad.mit.edu	37	2	185803137	185803137	+	Nonsense_Mutation	SNP	T	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:185803137T>G	uc002uph.2	+	4	3608	c.3014T>G	c.(3013-3015)TTA>TGA	p.L1005*		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	1005						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CAACCACCATTACCATTCAAA	0.433													21	73					0	0	0.00047179	0	0
BOLL	66037	broad.mit.edu	37	2	198646462	198646462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:198646462C>T	uc002uus.2	-	2	423	c.113G>A	c.(112-114)GGA>GAA	p.G38E	BOLL_uc002uur.2_Missense_Mutation_p.G44E|BOLL_uc002uut.2_Missense_Mutation_p.G50E|BOLL_uc010zha.1_5'UTR|BOLL_uc002uuu.1_Missense_Mutation_p.G44E	NM_033030	NP_149019	Q8N9W6	BOLL_HUMAN	boule isoform 2	38	RRM.				cell differentiation|meiosis|multicellular organismal development|positive regulation of translational initiation|spermatogenesis	cytoplasm	nucleotide binding|protein binding|RNA binding|translation activator activity			ovary(2)	2						ATCAATTCCTCCTACAAAGAT	0.358													26	93					0	0	0.000147802	0	0
ALS2CR8	79800	broad.mit.edu	37	2	203846876	203846876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:203846876C>T	uc002uzo.2	+	15	2051	c.1771C>T	c.(1771-1773)CCT>TCT	p.P591S	ALS2CR8_uc010zia.1_Missense_Mutation_p.P515S|ALS2CR8_uc010zib.1_Missense_Mutation_p.P515S|ALS2CR8_uc010zic.1_Missense_Mutation_p.P503S|ALS2CR8_uc002uzp.2_Missense_Mutation_p.P591S	NM_001104586	NP_001098056	Q8N187	AL2S8_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	591										large_intestine(1)|ovary(1)	2						GTCCTCTAGTCCTTCAGGACT	0.408													113	352					0	0	0.000781405	0	0
IDH1	3417	broad.mit.edu	37	2	209116254	209116254	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:209116254C>T	uc002vcs.2	-	3	268	c.22G>A	c.(22-24)GGT>AGT	p.G8S	IDH1_uc002vct.2_Missense_Mutation_p.G8S|IDH1_uc002vcu.2_Missense_Mutation_p.G8S	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	8					2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity			central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ACCACAGAACCGCCACTGATT	0.313			Mis		gliobastoma 								8	82					0	0	0.000274275	0	0
CPS1	1373	broad.mit.edu	37	2	211473190	211473190	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:211473190G>A	uc002vee.3	+	19	2430	c.2298G>A	c.(2296-2298)CTG>CTA	p.L766L	CPS1_uc010fur.2_Silent_p.L772L|CPS1_uc010fus.2_Silent_p.L315L	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	766					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		AACCTAGCCTGGATTACATGG	0.468													8	34					0	0	0.000274275	0	0
VWC2L	402117	broad.mit.edu	37	2	215279114	215279114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:215279114G>A	uc002vet.2	+	2	327	c.197G>A	c.(196-198)CGA>CAA	p.R66Q	VWC2L_uc010zjl.1_Missense_Mutation_p.R66Q	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	66	VWFC 1.					extracellular region					0						TTGGGAGAACGATTTTTCCCT	0.458													5	15					0	0	3.59834e-05	0	0
COL4A4	1286	broad.mit.edu	37	2	227906900	227906900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:227906900C>T	uc010zlt.1	-	37	4123	c.3469G>A	c.(3469-3471)GGG>AGG	p.G1157R		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1157	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCTGGATCCCCCTGGAGGCCT	0.547													16	45					0	0	9.7654e-05	0	0
SPHKAP	80309	broad.mit.edu	37	2	228846520	228846520	+	Silent	SNP	G	A	A	rs61752219		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:228846520G>A	uc002vpq.2	-	12	5063	c.5016C>T	c.(5014-5016)TTC>TTT	p.F1672F	SPHKAP_uc002vpp.2_Silent_p.F1643F|SPHKAP_uc010zlx.1_3'UTR	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1672						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CAACTGCATGGAAGATATCAC	0.483													13	42					0	0	0.000219431	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883352	228883352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:228883352C>T	uc002vpq.2	-	7	2265	c.2218G>A	c.(2218-2220)GAG>AAG	p.E740K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E740K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E740K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	740						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTGATGGTCTCCTTAGAAAGG	0.478													23	62					0	0	0.000229342	0	0
PID1	55022	broad.mit.edu	37	2	229890709	229890709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:229890709G>A	uc002vpr.3	-	3	430	c.392C>T	c.(391-393)CCG>CTG	p.P131L	PID1_uc002vps.3_Missense_Mutation_p.P129L|PID1_uc002vpt.3_Missense_Mutation_p.P98L|PID1_uc002vpu.3_Missense_Mutation_p.P49L	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	131	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		GGCATTGGCCGGAAAGACATC	0.547													15	22					0	0	0.000308642	0	0
SP140L	93349	broad.mit.edu	37	2	231254723	231254723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:231254723G>A	uc010fxm.1	+	11	1040	c.949G>A	c.(949-951)GAG>AAG	p.E317K	SP140L_uc010fxo.1_Intron	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	317	SAND.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						TTTACATAAGGAGAAATTGGA	0.398													8	32					0	0	0.000274275	0	0
PLCB4	5332	broad.mit.edu	37	20	9319562	9319562	+	Missense_Mutation	SNP	C	G	G	rs139867288		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr20:9319562C>G	uc002wnf.2	+	6	383	c.247C>G	c.(247-249)CTT>GTT	p.L83V	PLCB4_uc010gbw.1_Missense_Mutation_p.L83V|PLCB4_uc010gbx.2_Missense_Mutation_p.L83V|PLCB4_uc002wne.2_Missense_Mutation_p.L83V	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	83					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity	p.L83P(1)		skin(11)|ovary(3)|pancreas(1)	15						CTTGGCTGCTCTTGAAGCTGT	0.408													6	65					0	0	8.12818e-05	0	0
C20orf94	128710	broad.mit.edu	37	20	10541454	10541455	+	Missense_Mutation	DNP	CC	GG	GG			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr20:10541454_10541455CC>GG	uc010zre.1	+	4	404_405	c.224_225CC>GG	c.(223-225)CCC>CGG	p.P75R		NM_001009608	NP_001009608	Q5VYV7	CT094_HUMAN	hypothetical protein LOC128710	75							protein binding				0						AGATCCAATCCCTTGTCCTTAA	0.386													11	33					0	0	6.4e-05	0	0
PLUNC	51297	broad.mit.edu	37	20	31829239	31829239	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr20:31829239C>T	uc002wyv.2	+	6	700	c.630C>T	c.(628-630)ATC>ATT	p.I210I	PLUNC_uc002wyt.3_Silent_p.I210I|PLUNC_uc002wyu.3_Silent_p.I210I	NM_130852	NP_570913	Q9NP55	PLUNC_HUMAN	palate, lung and nasal epithelium associated	210					innate immune response	extracellular region	lipid binding				0						TCACAGGGATCTTGAATAAAG	0.507													38	128					0	0	0.000781405	0	0
AHCY	191	broad.mit.edu	37	20	32883331	32883331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr20:32883331G>A	uc002xai.2	-	2	228	c.89C>T	c.(88-90)CCG>CTG	p.P30L	AHCY_uc002xaj.2_Missense_Mutation_p.P2L|AHCY_uc010get.2_Missense_Mutation_p.P30L	NM_000687	NP_000678	P23526	SAHH_HUMAN	adenosylhomocysteinase isoform 1	30					methylation|xenobiotic metabolic process	cytosol|melanosome	adenosylhomocysteinase activity|protein binding				0						CATCAGGCCCGGCATCTCGTT	0.662													5	10					0	0	8.12818e-05	0	0
PTPRT	11122	broad.mit.edu	37	20	41306544	41306544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr20:41306544G>A	uc002xkg.2	-	7	1299	c.1115C>T	c.(1114-1116)CCG>CTG	p.P372L	PTPRT_uc010ggj.2_Missense_Mutation_p.P372L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	372	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				AGGCCCTGGCGGTCCCGTACC	0.542													13	37					0	0	0.000151284	0	0
SGK2	10110	broad.mit.edu	37	20	42199276	42199276	+	Missense_Mutation	SNP	G	A	A	rs35187177		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr20:42199276G>A	uc002xkv.2	+	6	779	c.560G>A	c.(559-561)CGG>CAG	p.R187Q	SGK2_uc002xkt.2_RNA|SGK2_uc002xkr.2_Missense_Mutation_p.R127Q|SGK2_uc010ggm.2_Missense_Mutation_p.R127Q|SGK2_uc002xks.2_Missense_Mutation_p.R126Q|SGK2_uc002xku.2_Missense_Mutation_p.R127Q	NM_016276	NP_057360	Q9HBY8	SGK2_HUMAN	serum/glucocorticoid regulated kinase 2 isoform	187	Protein kinase.				intracellular protein kinase cascade|response to oxidative stress		ATP binding|potassium channel regulator activity|protein serine/threonine kinase activity|sodium channel regulator activity			lung(3)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	6		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CACCTGCAGCGGGAGCGCCGG	0.642													12	36					0	0	0.00010058	0	0
TOX2	84969	broad.mit.edu	37	20	42683020	42683020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr20:42683020G>A	uc002xlf.3	+	5	777	c.760G>A	c.(760-762)GAG>AAG	p.E254K	TOX2_uc010ggo.2_Missense_Mutation_p.E245K|TOX2_uc002xle.3_Missense_Mutation_p.E203K|TOX2_uc010ggp.2_Missense_Mutation_p.E203K|TOX2_uc002xlg.2_Missense_Mutation_p.E203K|TOX2_uc010zwk.1_Missense_Mutation_p.E123K	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	254					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			GGACCCCAATGAGCCGCAGAA	0.547													5	16					0	0	0.000602214	0	0
APCDD1L	164284	broad.mit.edu	37	20	57045666	57045666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr20:57045666C>T	uc002xze.1	-	2	373	c.187G>A	c.(187-189)GGC>AGC	p.G63S	APCDD1L_uc010zzp.1_Missense_Mutation_p.G74S	NM_153360	NP_699191	Q8NCL9	APCDL_HUMAN	adenomatosis polyposis coli down-regulated	63						integral to membrane				ovary(1)	1	Lung NSC(12;0.000856)|all_lung(29;0.0025)		BRCA - Breast invasive adenocarcinoma(13;5.6e-11)|Epithelial(14;1.67e-07)|all cancers(14;1.48e-06)			AAGTCTTACCCTGTGGAGATC	0.567													4	5					0	0	3.59834e-05	0	0
YTHDF1	54915	broad.mit.edu	37	20	61835093	61835093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr20:61835093G>A	uc002yeh.2	-	4	493	c.199C>T	c.(199-201)CCT>TCT	p.P67S	YTHDF1_uc011aaq.1_Missense_Mutation_p.P17S	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	67										ovary(2)	2						AGGGAGTAAGGAAATCCAATG	0.512													5	21					0	0	0.000602214	0	0
KRTAP19-7	337974	broad.mit.edu	37	21	31933457	31933458	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr21:31933457_31933458GG>AA	uc011adb.1	-	1	151_152	c.151_152CC>TT	c.(151-153)CCA>TTA	p.P51L		NM_181614	NP_853645	Q3SYF9	KR197_HUMAN	keratin associated protein 19-7	51						intermediate filament					0						ATAGCATGATGGGTGGCAGCAG	0.47													22	90					0	0	6.4e-05	0	0
DSCAM	1826	broad.mit.edu	37	21	42080539	42080539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr21:42080539C>T	uc002yyq.1	-	2	654	c.202G>A	c.(202-204)GAT>AAT	p.D68N	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	68	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCGGGGACATCGTAGATCTCC	0.562													15	29					0	0	0.000308642	0	0
SIK1	150094	broad.mit.edu	37	21	44841562	44841562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr21:44841562G>A	uc002zdf.2	-	5	582	c.455C>T	c.(454-456)ACC>ATC	p.T152I		NM_173354	NP_775490	P57059	SIK1_HUMAN	salt-inducible kinase 1	152	Protein kinase.				anoikis|cell cycle|cell differentiation|intracellular protein kinase cascade|multicellular organismal development|regulation of cell differentiation|regulation of mitotic cell cycle	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(2)|testis(2)|ovary(1)|central_nervous_system(1)|skin(1)	7						GAGGTTCTCGGTCTTGAGGTC	0.617													4	15					0	0	0.00024832	0	0
KRTAP10-1	386677	broad.mit.edu	37	21	45959507	45959507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr21:45959507G>A	uc002zfh.1	-	1	572	c.527C>T	c.(526-528)TCC>TTC	p.S176F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198691	NP_941964	P60331	KR101_HUMAN	keratin associated protein 10-1	176	15.|24 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						GCAGGGGGAGGAGGTGCAGCA	0.617													17	71					0	0	9.7654e-05	0	0
DIP2A	23181	broad.mit.edu	37	21	47918558	47918558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr21:47918558C>T	uc002zjo.2	+	5	650	c.467C>T	c.(466-468)CCG>CTG	p.P156L	DIP2A_uc011afy.1_Missense_Mutation_p.P92L|DIP2A_uc011afz.1_Missense_Mutation_p.P156L|DIP2A_uc002zjl.2_Missense_Mutation_p.P156L|DIP2A_uc002zjm.2_Missense_Mutation_p.P156L|DIP2A_uc010gql.2_Missense_Mutation_p.P156L|DIP2A_uc002zjn.2_Missense_Mutation_p.P156L	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a	156					multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		ACCTCCACTCCGCTCCAGAGC	0.602													24	74					0	0	0.000375601	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072012	17072012	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr22:17072012G>A	uc002zlp.1	-	1	1689	c.1429C>T	c.(1429-1431)CTA>TTA	p.L477L		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	477					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				ACACCCATTAGGAGGTTCCCA	0.512													21	96					0	0	0.000229342	0	0
LOC96610	96610	broad.mit.edu	37	22	22735540	22735540	+	RNA	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr22:22735540C>T	uc011aim.1	+	46		c.5336C>T								Parts of antibodies, mostly variable regions.												0						ACCAGCAGCTCCCAGGAACGG	0.577													15	86					0	0	0.000566183	0	0
SGSM1	129049	broad.mit.edu	37	22	25243686	25243686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr22:25243686G>A	uc003abg.2	+	4	382	c.225G>A	c.(223-225)ATG>ATA	p.M75I	SGSM1_uc003abh.2_Missense_Mutation_p.M75I|SGSM1_uc010guu.1_Missense_Mutation_p.M75I|SGSM1_uc003abj.2_Missense_Mutation_p.M75I|SGSM1_uc003abi.1_Missense_Mutation_p.M50I|SGSM1_uc003abf.2_Missense_Mutation_p.M75I	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	75	RUN.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						CCCTCTTTATGAAAGTGGGCA	0.622													7	24					0	0	0.000157383	0	0
EIF3D	8664	broad.mit.edu	37	22	36922108	36922108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr22:36922108C>T	uc003apq.2	-	2	177	c.61G>A	c.(61-63)GTT>ATT	p.V21I	EIF3D_uc003apr.2_Missense_Mutation_p.V21I|EIF3D_uc011ams.1_5'UTR|EIF3D_uc011amt.1_Missense_Mutation_p.V21I	NM_003753	NP_003744	O15371	EIF3D_HUMAN	eukaryotic translation initiation factor 3	21						cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			pancreas(1)	1						TGCTCGGGAACCGCACAGGGA	0.517													6	36					0	0	3.59834e-05	0	0
NCF4	4689	broad.mit.edu	37	22	37271803	37271803	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr22:37271803G>A	uc003apy.3	+	8	920	c.736G>A	c.(736-738)GAA>AAA	p.E246K	NCF4_uc003apz.3_Missense_Mutation_p.E246K	NM_000631	NP_000622	Q15080	NCF4_HUMAN	neutrophil cytosolic factor 4 isoform 1	246					cell communication|immune response|oxidation-reduction process	cytosol|NADPH oxidase complex	phosphatidylinositol binding|protein dimerization activity			ovary(1)	1						CTACTACTACGAAGACACCAT	0.597													25	84					0	0	0.00047179	0	0
SH3BP1	23616	broad.mit.edu	37	22	38046168	38046168	+	Silent	SNP	C	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr22:38046168C>G	uc003ati.2	+	15	1437	c.1326C>G	c.(1324-1326)GCC>GCG	p.A442A	SH3BP1_uc003atg.1_RNA|SH3BP1_uc011anl.1_Missense_Mutation_p.P475R|SH3BP1_uc003ath.1_Silent_p.A442A|SH3BP1_uc003atj.1_Silent_p.A378A|SH3BP1_uc003atk.1_Silent_p.A356A|uc003atl.1_Intron	NM_018957	NP_061830	Q9Y3L3	3BP1_HUMAN	SH3-domain binding protein 1	442	Rho-GAP.				signal transduction	cytoplasm	GTPase activator activity|SH3 domain binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GGGACCAGGCCCAGCTGGATG	0.393													6	21					0	0	8.12818e-05	0	0
MKL1	57591	broad.mit.edu	37	22	40827452	40827452	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr22:40827452G>A	uc003ayv.1	-	3	303	c.96C>T	c.(94-96)TCC>TCT	p.S32S	MKL1_uc003ayw.1_Silent_p.S32S|MKL1_uc010gye.1_Silent_p.S32S|MKL1_uc010gyf.1_Silent_p.S32S	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	32	RPEL 1.|Mediates interaction with SCAI and ACTB (By similarity).				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TCTCCGGCCGGGAACGAATCT	0.473			T	RBM15	acute megakaryocytic leukemia								35	178					0	0	0.000589545	0	0
LRRN1	57633	broad.mit.edu	37	3	3886930	3886930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:3886930C>T	uc003bpt.3	+	2	1366	c.605C>T	c.(604-606)CCT>CTT	p.P202L	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	202	Extracellular (Potential).|LRR 6.					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		GGAGAAAACCCTGTGATTGGA	0.403													19	109					0	0	0.000175454	0	0
LRRN1	57633	broad.mit.edu	37	3	3887559	3887559	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:3887559G>A	uc003bpt.3	+	2	1995	c.1234G>A	c.(1234-1236)GAA>AAA	p.E412K	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	412	LRRCT.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		CCAGGTGAAGGAAGTTTTAAT	0.488													13	46					0	0	0.00010058	0	0
EDEM1	9695	broad.mit.edu	37	3	5252853	5252854	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:5252853_5252854CC>TT	uc003bqi.2	+	10	1764_1765	c.1632_1633CC>TT	c.(1630-1635)GACCGG>GATTGG	p.R545W	EDEM1_uc003bqh.2_Missense_Mutation_p.R545W	NM_014674	NP_055489	Q92611	EDEM1_HUMAN	ER degradation enhancer, mannosidase alpha-like	545	Lumenal (Potential).				ER-associated protein catabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	integral to endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			ovary(2)|breast(1)	3				Epithelial(13;0.0588)|OV - Ovarian serous cystadenocarcinoma(96;0.0682)		CCACAGAAGACCGGATGGAGAG	0.465													7	44					0	0	6.4e-05	0	0
THRB	7068	broad.mit.edu	37	3	24185081	24185081	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:24185081C>T	uc003ccx.3	-	8	998	c.649G>A	c.(649-651)GAG>AAG	p.E217K	THRB_uc010hfe.2_Missense_Mutation_p.E217K|THRB_uc003ccy.3_Missense_Mutation_p.E217K|THRB_uc003ccz.3_Missense_Mutation_p.E212K	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	217					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	TCCCATTCCTCGTCTGTGGGC	0.567													12	63					0	0	0.000151284	0	0
TRANK1	9881	broad.mit.edu	37	3	36898977	36898977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:36898977C>T	uc003cgj.2	-	3	756	c.454G>A	c.(454-456)GAT>AAT	p.D152N		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	702					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AAAGACGGATCCACTTCAACC	0.552													7	18					0	0	8.12818e-05	0	0
DLEC1	9940	broad.mit.edu	37	3	38158037	38158038	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:38158037_38158038GG>AA	uc003cho.1	+	28	3971_3972	c.3950_3951GG>AA	c.(3949-3951)CGG>CAA	p.R1317Q	DLEC1_uc003chp.1_Missense_Mutation_p.R1317Q|DLEC1_uc010hgv.1_Missense_Mutation_p.R1320Q|DLEC1_uc003chr.1_Missense_Mutation_p.R388Q|DLEC1_uc010hgx.1_RNA|DLEC1_uc003chs.1_5'Flank	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	1317					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		TTCCCGCTGCGGGACCAAGCCG	0.599													8	38					0	0	6.4e-05	0	0
SLC22A14	9389	broad.mit.edu	37	3	38348010	38348010	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:38348010A>T	uc010hhc.1	+	2	535	c.493A>T	c.(493-495)AAG>TAG	p.K165*	SLC22A14_uc003cia.2_Nonsense_Mutation_p.K165*|SLC22A14_uc003cib.2_Nonsense_Mutation_p.K165*|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	165	Extracellular (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		TCCTGACGCTAAGAAGCGATC	0.438													18	72					0	0	0.000132079	0	0
KIF15	56992	broad.mit.edu	37	3	44893366	44893366	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:44893366G>A	uc003cnx.3	+	33	4043	c.3894G>A	c.(3892-3894)GAG>GAA	p.E1298E	KIF15_uc010hiq.2_Silent_p.E1201E|KIF15_uc010hir.2_Silent_p.E346E	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	1298	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		AAACTTTGGAGTCTAAAGCAT	0.418													22	73					0	0	0.000175454	0	0
COL7A1	1294	broad.mit.edu	37	3	48605294	48605295	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:48605294_48605295GG>AA	uc003ctz.2	-	106	7906_7907	c.7905_7906CC>TT	c.(7903-7908)GGCCTT>GGTTTT	p.L2636F		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2636	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TCTCCATCAAGGCCACAGGCTC	0.599													8	36					0	0	6.4e-05	0	0
WDR6	11180	broad.mit.edu	37	3	49051440	49051440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:49051440C>T	uc003cvj.2	+	2	2701	c.2563C>T	c.(2563-2565)CCA>TCA	p.P855S	WDR6_uc011bbx.1_3'UTR|WDR6_uc011bby.1_Missense_Mutation_p.P303S|WDR6_uc010hkn.2_Missense_Mutation_p.P799S|WDR6_uc011bbz.1_Missense_Mutation_p.P774S	NM_018031	NP_060501	Q9NNW5	WDR6_HUMAN	WD repeat domain 6 protein	825					cell cycle arrest|negative regulation of cell proliferation	cytoplasm				central_nervous_system(1)	1				Kidney(197;9.12e-07)|KIRC - Kidney renal clear cell carcinoma(197;1.32e-05)|BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000155)		CCCCAGCACCCCAAGCCGCCT	0.617											OREG0015565	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	29					0	0	3.59834e-05	0	0
DOCK3	1795	broad.mit.edu	37	3	51198126	51198126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:51198126G>A	uc011bds.1	+	12	1053	c.1030G>A	c.(1030-1032)GTT>ATT	p.V344I		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	344						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TGTTCTTAAGGTTTACACGTG	0.443													6	24					0	0	3.59834e-05	0	0
STAB1	23166	broad.mit.edu	37	3	52548813	52548813	+	Missense_Mutation	SNP	C	A	A	rs142311027		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:52548813C>A	uc003dej.2	+	35	3849	c.3775C>A	c.(3775-3777)CGC>AGC	p.R1259S		NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1259	Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GGGCTCAAGTCGCTGCCTGCA	0.677													10	19					1.08611e-07	1.26379e-06	6.40141e-05	1	0
STAB1	23166	broad.mit.edu	37	3	52557285	52557285	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:52557285G>A	uc003dej.2	+	64	7142	c.7068G>A	c.(7066-7068)CTG>CTA	p.L2356L	STAB1_uc003dek.1_Silent_p.L371L|STAB1_uc003del.2_Silent_p.L243L	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	2356	Extracellular (Potential).|FAS1 7.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		TCGACTTCCTGGACTTCCTGG	0.557													26	51					0	0	0.000147802	0	0
DNAH12	201625	broad.mit.edu	37	3	57494241	57494241	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:57494241T>G	uc003dit.2	-	7	750	c.569A>C	c.(568-570)CAT>CCT	p.H190P	DNAH12_uc003diu.2_Missense_Mutation_p.H190P	NM_178504	NP_848599	Q6ZR08	DYH12_HUMAN	dynein heavy chain domain 2 isoform 1	190	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			pancreas(1)|skin(1)	2						ATAGCTAGAATGCCAAGGATT	0.328													10	31					0	0	6.40141e-05	0	0
DHFRL1	200895	broad.mit.edu	37	3	93780296	93780296	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:93780296G>A	uc003dri.2	-	2	226	c.60C>T	c.(58-60)AAC>AAT	p.N20N	DHFRL1_uc003drj.2_Silent_p.N20N|NSUN3_uc003drk.2_5'Flank|NSUN3_uc003drl.1_5'Flank	NM_176815	NP_789785	Q86XF0	DYRL1_HUMAN	dihydrofolate reductase-like 1	20	DHFR.|NADP (By similarity).				glycine biosynthetic process|nucleotide biosynthetic process|one-carbon metabolic process		dihydrofolate reductase activity|NADP binding				0						GCAGGTCCCCGTTCTTGCCGA	0.507													20	56					0	0	0.000375601	0	0
OR5K4	403278	broad.mit.edu	37	3	98072934	98072934	+	Silent	SNP	C	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:98072934C>A	uc011bgv.1	+	1	237	c.237C>A	c.(235-237)CCC>CCA	p.P79P		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	79	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						CTGTTACCCCCAAGATGTTAG	0.413													9	222					0.000442599	0.0050549	0.000442599	1	0
WDR52	55779	broad.mit.edu	37	3	113138963	113138963	+	Silent	SNP	G	A	A	rs138006295	byFrequency	TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:113138963G>A	uc003eae.1	-	5	517	c.471C>T	c.(469-471)GCC>GCT	p.A157A		NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	157										central_nervous_system(1)	1						CTATGTATATGGCGATACTGT	0.433													5	28					0	0	0.000602214	0	0
RABL3	285282	broad.mit.edu	37	3	120449611	120449611	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:120449611G>A	uc003edx.2	-	2	100	c.70C>T	c.(70-72)CAT>TAT	p.H24Y		NM_173825	NP_776186	Q5HYI8	RABL3_HUMAN	RAB, member of RAS oncogene family-like 3	24	Small GTPase-like.				small GTPase mediated signal transduction		GTP binding				0				GBM - Glioblastoma multiforme(114;0.151)		CATAGGAGATGGACTAACGAA	0.383													21	71					0	0	0.000720815	0	0
CD86	942	broad.mit.edu	37	3	121822654	121822654	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:121822654G>A	uc003eet.2	+	3	476	c.360G>A	c.(358-360)ATG>ATA	p.M120I	CD86_uc011bjo.1_Missense_Mutation_p.M38I|CD86_uc011bjp.1_Intron|CD86_uc003eeu.2_Missense_Mutation_p.M114I	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1	120	Ig-like V-type.|Extracellular (Potential).				interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	CCACAGGAATGATTCGCATCC	0.438													14	41					0	0	0.000308642	0	0
PARP15	165631	broad.mit.edu	37	3	122335876	122335876	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:122335876G>T	uc003efm.2	+	6	931	c.865G>T	c.(865-867)GTC>TTC	p.V289F	PARP15_uc003efn.2_Intron|PARP15_uc003efo.1_Missense_Mutation_p.V36F|PARP15_uc003efp.1_Missense_Mutation_p.V55F|PARP15_uc011bjt.1_Missense_Mutation_p.V55F	NM_001113523	NP_001106995	Q460N3	PAR15_HUMAN	poly (ADP-ribose) polymerase family, member 15	267					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	NAD+ ADP-ribosyltransferase activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)	5				GBM - Glioblastoma multiforme(114;0.0531)		GGTCGGGACTGTCTCTAAGCC	0.443													23	87					3.73988e-18	4.36084e-17	0.000147802	1	0
Unknown	0	broad.mit.edu	37	3	126915998	126915998	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:126915998G>A	uc003eji.1	+	2	710	c.470G>A	c.(469-471)GGA>GAA	p.G157E						RecName: Full=Putative uncharacterized protein C3orf56;																		CCCCAGGTGGGATGCTGGACT	0.622													13	42					0	0	0.000219431	0	0
TFDP2	7029	broad.mit.edu	37	3	141671371	141671371	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:141671371G>A	uc003eun.3	-	13	1704	c.1325C>T	c.(1324-1326)TCC>TTC	p.S442F	TFDP2_uc003euk.3_Missense_Mutation_p.S355F|TFDP2_uc010hur.2_Missense_Mutation_p.S382F|TFDP2_uc003eul.3_Missense_Mutation_p.S382F|TFDP2_uc011bnf.1_Missense_Mutation_p.S345F|TFDP2_uc011bng.1_Missense_Mutation_p.S306F|TFDP2_uc003eum.3_Missense_Mutation_p.S382F	NM_006286	NP_006277	Q14188	TFDP2_HUMAN	transcription factor Dp-2 (E2F dimerization	442	Asp/Glu-rich (acidic; NCB domain).				cell cycle	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity|transcription factor binding			kidney(1)	1						TGGGGAGGAGGAATCCTCCTC	0.483													20	97					0	0	0.00047179	0	0
ATR	545	broad.mit.edu	37	3	142268424	142268424	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:142268424A>G	uc003eux.3	-	15	3190	c.3068T>C	c.(3067-3069)GTC>GCC	p.V1023A		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1023					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TCTACGATTGACATTTAATTG	0.358								Other_conserved_DNA_damage_response_genes					7	31					0	0	8.12818e-05	0	0
PLCH1	23007	broad.mit.edu	37	3	155199129	155199129	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:155199129G>A	uc011bok.1	-	23	4987	c.4710C>T	c.(4708-4710)CTC>CTT	p.L1570L	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Silent_p.L1532L	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1570					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GTGCCCGGGGGAGCTGATTGG	0.517													14	49					0	0	0.000308642	0	0
LEKR1	389170	broad.mit.edu	37	3	156763400	156763401	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:156763400_156763401CC>TT	uc003fba.1	+	14	2363_2364	c.1028_1029CC>TT	c.(1027-1029)ACC>ATT	p.T343I		NM_001004316	NP_001004316	Q6ZMV7	LEKR1_HUMAN	leucine, glutamate and lysine rich 1	Error:Variant_position_missing_in_D3DNK7_after_alignment											0			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			ACTTTCCCAACCTCAGATAAGC	0.52													12	42					0	0	6.4e-05	0	0
MLF1	4291	broad.mit.edu	37	3	158310307	158310307	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:158310307C>T	uc003fcb.2	+	2	269	c.132C>T	c.(130-132)ATC>ATT	p.I44I	MLF1_uc003fbz.2_Silent_p.I19I|MLF1_uc003fca.2_Silent_p.I19I|MLF1_uc003fbx.2_Silent_p.I19I|MLF1_uc003fcc.2_Silent_p.I60I|MLF1_uc003fby.2_5'UTR|MLF1_uc010hvx.2_Silent_p.I19I	NM_022443	NP_071888	P58340	MLF1_HUMAN	myeloid leukemia factor 1 isoform 1	44					cell cycle arrest|myeloid progenitor cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein domain specific binding				0		Melanoma(1037;0.000458)|Prostate(884;0.0235)|all_neural(597;0.0299)	Lung(72;0.00199)|LUSC - Lung squamous cell carcinoma(72;0.00256)			TGCTCAGTATCTCTGATGGTA	0.388			T	NPM1	AML								9	49					0	0	0.000274275	0	0
WDR49	151790	broad.mit.edu	37	3	167248902	167248902	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:167248902C>T	uc003fev.1	-	9	1468	c.1162_splice	c.e9+1	p.G388_splice	WDR49_uc003feu.1_Splice_Site_p.G213_splice|WDR49_uc011bpd.1_Splice_Site_p.G452_splice|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49											large_intestine(1)|ovary(1)|skin(1)	3						ATATATTTTACCTGTCACTGC	0.358													7	33					0	0	8.12818e-05	0	0
CLDN11	5010	broad.mit.edu	37	3	170141080	170141080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:170141080G>A	uc003fgx.2	+	2	558	c.356G>A	c.(355-357)CGG>CAG	p.R119Q	CLDN11_uc011bpt.1_Missense_Mutation_p.R119Q|CLDN11_uc003fgy.2_Missense_Mutation_p.R35Q	NM_005602	NP_005593	O75508	CLD11_HUMAN	claudin 11	119	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			central_nervous_system(1)	1	all_cancers(22;5.62e-23)|all_epithelial(15;7.54e-28)|all_lung(20;2.51e-17)|Lung NSC(18;1.02e-16)|Ovarian(172;0.000567)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			AAGTACAGGCGGGCCCAGCTG	0.567													17	40					0	0	0.00074312	0	0
MCF2L2	23101	broad.mit.edu	37	3	183056698	183056698	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr3:183056698G>A	uc003fli.1	-	5	466	c.376C>T	c.(376-378)CCA>TCA	p.P126S	MCF2L2_uc003flj.1_Missense_Mutation_p.P126S|MCF2L2_uc003flp.1_Missense_Mutation_p.P161S	NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	126	CRAL-TRIO.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			AAGTTTCCTGGAAATGCCACC	0.418													13	41					0	0	0.000308642	0	0
ZNF721	170960	broad.mit.edu	37	4	436563	436563	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:436563T>C	uc003gag.2	-	3	2384	c.1693A>G	c.(1693-1695)ACC>GCC	p.T565A	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.T597A|ZNF721_uc010ibe.2_Missense_Mutation_p.T553A	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	565						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TGTCTAAAGGTTTTGCCACAT	0.418													4	133					0	0	3.59834e-05	0	0
POLN	353497	broad.mit.edu	37	4	2172425	2172425	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:2172425G>C	uc003ger.2	-	11	1535	c.1535C>G	c.(1534-1536)CCG>CGG	p.P512R	POLN_uc010ich.1_Missense_Mutation_p.P103R|POLN_uc011bvi.1_Missense_Mutation_p.P512R	NM_181808	NP_861524	Q7Z5Q5	DPOLN_HUMAN	DNA-directed DNA polymerase nu	512					DNA repair|DNA replication	nucleus	DNA binding|DNA-directed DNA polymerase activity			kidney(2)|ovary(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(23;0.0955)			TGATGTAGACGGGTATTTCTG	0.448								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					3	92					0	0	0.00024832	0	0
ADD1	118	broad.mit.edu	37	4	2900018	2900018	+	Silent	SNP	A	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:2900018A>G	uc003gfr.2	+	7	1037	c.849A>G	c.(847-849)AAA>AAG	p.K283K	ADD1_uc003gfn.2_Intron|ADD1_uc010ico.1_Silent_p.K283K|ADD1_uc003gfo.2_Silent_p.K283K|ADD1_uc003gfp.2_Silent_p.K283K|ADD1_uc003gfq.2_Silent_p.K283K|ADD1_uc003gfs.2_Silent_p.K283K|ADD1_uc003gft.3_Silent_p.K283K|ADD1_uc003gfu.2_Silent_p.K33K	NM_001119	NP_001110	P35611	ADDA_HUMAN	adducin 1 (alpha) isoform a	283					actin filament bundle assembly|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|positive regulation of protein binding	cytosol|F-actin capping protein complex|nucleus|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding|transcription factor binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		AAGAGGAAAAAGTTTTGATTC	0.428													15	58					0	0	0.000422831	0	0
ACOX3	8310	broad.mit.edu	37	4	8383294	8383294	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:8383294G>A	uc010idk.2	-	14	1723	c.1578C>T	c.(1576-1578)CTC>CTT	p.L526L	ACOX3_uc003glc.3_Silent_p.L526L|ACOX3_uc003gld.3_Silent_p.L526L|ACOX3_uc003gle.1_Silent_p.L431L	NM_003501	NP_003492	O15254	ACOX3_HUMAN	acyl-Coenzyme A oxidase 3 isoform a	526					bile acid metabolic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|pristanoyl-CoA oxidase activity			central_nervous_system(1)	1						AAGTCTCTCGGAGCAGGTAGC	0.408													19	68					0	0	0.000132079	0	0
ZNF518B	85460	broad.mit.edu	37	4	10447881	10447882	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:10447881_10447882GG>TT	uc003gmn.2	-	3	558_559	c.71_72CC>AA	c.(70-72)CCC>CAA	p.P24Q		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	24					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						CAGGCTGTTTGGGTGACATGGT	0.455													8	211					0	0	6.4e-05	0	0
KCNIP4	80333	broad.mit.edu	37	4	20852196	20852196	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:20852196C>T	uc003gqe.2	-	2	291	c.207G>A	c.(205-207)GAG>GAA	p.E69E	KCNIP4_uc003gqf.1_Silent_p.E65E|KCNIP4_uc003gqg.1_Silent_p.E24E|KCNIP4_uc003gqh.1_Silent_p.E61E|KCNIP4_uc003gqi.1_Silent_p.E24E|KCNIP4_uc010iel.2_Silent_p.E66E|KCNIP4_uc003gqd.3_Silent_p.E49E	NM_147182	NP_671711	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 3	86	EF-hand 1; degenerate.					plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				GGATCTGAAGCTCTTTCTTGG	0.458													15	58					0	0	0.000566183	0	0
TBC1D19	55296	broad.mit.edu	37	4	26638892	26638892	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:26638892C>T	uc003gsf.3	+	5	624	c.354C>T	c.(352-354)ATC>ATT	p.I118I	TBC1D19_uc010iew.2_Silent_p.I118I|TBC1D19_uc011bxu.1_Silent_p.I53I	NM_018317	NP_060787	Q8N5T2	TBC19_HUMAN	TBC1 domain family, member 19	118						intracellular	Rab GTPase activator activity			breast(1)	1		Breast(46;0.0503)				AACTGAGTATCCCACTGGCAC	0.303													16	54					0	0	0.00074312	0	0
GUF1	60558	broad.mit.edu	37	4	44691384	44691384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:44691384C>T	uc003gww.3	+	10	1367	c.1160C>T	c.(1159-1161)ACC>ATC	p.T387I	GUF1_uc010ifz.1_RNA	NM_021927	NP_068746	Q8N442	GUF1_HUMAN	GUF1 GTPase homolog	387					translation	mitochondrial inner membrane	GTP binding|GTPase activity			upper_aerodigestive_tract(1)	1						TCCAGTGTGACCGTTCATCGG	0.393													14	50					0	0	0.000308642	0	0
GABRA4	2557	broad.mit.edu	37	4	46930648	46930648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:46930648G>A	uc003gxg.2	-	9	1398	c.1259C>T	c.(1258-1260)TCT>TTT	p.S420F		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	420	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GCCTTTAGAAGATTCTTGAAC	0.438													12	59					0	0	0.000151284	0	0
UGT2B10	7365	broad.mit.edu	37	4	69696437	69696437	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:69696437G>C	uc003hee.2	+	6	1452	c.1427G>C	c.(1426-1428)CGA>CCA	p.R476P	UGT2B10_uc011cam.1_Missense_Mutation_p.R392P	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	476					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						AAACATCTTCGAGTTGCAGCC	0.468													3	101					0	0	6.4e-05	0	0
ADH1C	126	broad.mit.edu	37	4	100268183	100268183	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:100268183C>G	uc003huu.2	-	5	324	c.239G>C	c.(238-240)GGG>GCG	p.G80A		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	80					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	TGTAGTCACCCCTTCTCAAAC	0.463									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				4	175					0	0	3.59834e-05	0	0
TBCK	93627	broad.mit.edu	37	4	107114875	107114875	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:107114875C>T	uc010ilv.2	-	22	2315	c.1950G>A	c.(1948-1950)GGG>GGA	p.G650G	TBCK_uc003hyb.2_Silent_p.G393G|TBCK_uc003hye.2_Silent_p.G611G|TBCK_uc003hyc.2_Silent_p.G587G|TBCK_uc003hyd.2_Silent_p.G478G|TBCK_uc003hyf.2_Silent_p.G650G	NM_001163435	NP_001156907	Q8TEA7	TBCK_HUMAN	TBC domain-containing protein kinase-like	650	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			large_intestine(2)|upper_aerodigestive_tract(1)|stomach(1)|ovary(1)	5						AAGAGGAATTCCCAAGTAGTA	0.348													14	21					0	0	0.000308642	0	0
UGT8	7368	broad.mit.edu	37	4	115544196	115544196	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:115544196T>A	uc003ibs.2	+	2	682	c.160T>A	c.(160-162)TTC>ATC	p.F54I	UGT8_uc003ibt.2_Missense_Mutation_p.F54I|UGT8_uc011cge.1_RNA	NM_001128174	NP_001121646	Q16880	CGT_HUMAN	UDP-galactose-ceramide galactosyltransferase 8	54					central nervous system development|peripheral nervous system development	integral to membrane	2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity|UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity			ovary(1)|skin(1)	2		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000632)		CCATACAGTGTTCCTCCTCTC	0.488													19	13					0	0	0.000175454	0	0
USP53	54532	broad.mit.edu	37	4	120190984	120190984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:120190984G>A	uc003ics.3	+	14	2493	c.1427G>A	c.(1426-1428)CGA>CAA	p.R476Q	USP53_uc003icr.3_Missense_Mutation_p.R476Q|USP53_uc003icu.3_Missense_Mutation_p.R99Q|USP53_uc003ict.2_Missense_Mutation_p.R99Q	NM_019050	NP_061923	Q70EK8	UBP53_HUMAN	ubiquitin specific protease 53	476					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			ovary(1)|breast(1)|kidney(1)|skin(1)	4						GATTTAGGACGACATAGAGGT	0.284													40	154					0	0	0.000781405	0	0
ODZ3	55714	broad.mit.edu	37	4	183650198	183650198	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:183650198G>A	uc003ivd.1	+	13	2486	c.2449G>A	c.(2449-2451)GAT>AAT	p.D817N	ODZ3_uc003ive.1_Missense_Mutation_p.D223N	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	817	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GGGACTGCCGGATCCTCAGGA	0.483													10	29					0	0	0.000442599	0	0
IRF2	3660	broad.mit.edu	37	4	185320087	185320087	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr4:185320087G>C	uc003iwf.3	-	7	876	c.676C>G	c.(676-678)CCC>GCC	p.P226A		NM_002199	NP_002190	P14316	IRF2_HUMAN	interferon regulatory factor 2	226					blood coagulation|cell proliferation|interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	focal adhesion|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(41;7.86e-14)|Lung NSC(41;1.87e-13)|Colorectal(36;0.00146)|Hepatocellular(41;0.00826)|Renal(120;0.00992)|Prostate(90;0.0115)|all_neural(102;0.0573)|all_hematologic(60;0.0592)		all cancers(43;3.94e-27)|Epithelial(43;5.3e-24)|OV - Ovarian serous cystadenocarcinoma(60;1.06e-10)|Colorectal(24;7.98e-07)|STAD - Stomach adenocarcinoma(60;3.95e-05)|GBM - Glioblastoma multiforme(59;8.3e-05)|COAD - Colon adenocarcinoma(29;0.000106)|BRCA - Breast invasive adenocarcinoma(30;0.000311)|LUSC - Lung squamous cell carcinoma(40;0.0128)|READ - Rectum adenocarcinoma(43;0.0419)		GAAGACACGGGGGAGATCTGC	0.617													4	46					0	0	0.000602214	0	0
IRX2	153572	broad.mit.edu	37	5	2748634	2748634	+	Silent	SNP	C	T	T	rs148326536		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:2748634C>T	uc003jda.2	-	3	1430	c.1188G>A	c.(1186-1188)GGG>GGA	p.G396G	IRX2_uc003jdb.2_Silent_p.G396G	NM_001134222	NP_001127694	Q9BZI1	IRX2_HUMAN	iroquois homeobox 2	396						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1				GBM - Glioblastoma multiforme(108;0.204)		CGTTCAAGTTCCCGTAGTTTG	0.716													6	31					0	0	0.000157383	0	0
DNAH5	1767	broad.mit.edu	37	5	13762983	13762984	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:13762983_13762984CT>TC	uc003jfd.2	-	60	10170_10171	c.10128_10129AG>GA	c.(10126-10131)GAAGAG>GAGAAG	p.E3377K	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3377	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCTATCACCTCTTCATTGATTG	0.371									Kartagener_syndrome				7	47					0	0	6.4e-05	0	0
DNAH5	1767	broad.mit.edu	37	5	13913969	13913969	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:13913969G>A	uc003jfd.2	-	11	1461	c.1419C>T	c.(1417-1419)TTC>TTT	p.F473F	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	473	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GAAAAGTTTCGAATTTTCCAA	0.373									Kartagener_syndrome				18	71					0	0	0.00074312	0	0
CDH6	1004	broad.mit.edu	37	5	31299667	31299667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:31299667G>A	uc003jhe.1	+	5	1066	c.740G>A	c.(739-741)GGA>GAA	p.G247E	CDH6_uc003jhd.1_Missense_Mutation_p.G247E	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	247	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						CAGATGGGAGGATTATCTGGG	0.478													16	47					0	0	0.000308642	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049520	36049520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:36049520C>T	uc003jjz.1	-	4	407	c.314G>A	c.(313-315)GGA>GAA	p.G105E	UGT3A2_uc011cos.1_Missense_Mutation_p.G71E|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	105	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTCAAATTTTCCTCTGTAAGA	0.284													10	51					0	0	0.000673444	0	0
CARD6	84674	broad.mit.edu	37	5	40853853	40853854	+	Missense_Mutation	DNP	CG	AT	AT	rs34452222		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:40853853_40853854CG>AT	uc003jmg.2	+	3	2494_2495	c.2419_2420CG>AT	c.(2419-2421)CGG>ATG	p.R807M		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	807					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						CAGAGTTGCTCGGGGATGTCAC	0.47													10	266					0	0	6.4e-05	0	0
C7	730	broad.mit.edu	37	5	40972545	40972545	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:40972545G>A	uc003jmh.2	+	15	2037	c.1923G>A	c.(1921-1923)CAG>CAA	p.Q641Q	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	641	Sushi 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				ATGGCATACAGAGTCACCCCC	0.423													13	26					0	0	0.00010058	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41039656	41039656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:41039656C>T	uc003jmj.3	-	20	2445	c.1955G>A	c.(1954-1956)GGA>GAA	p.G652E	HEATR7B2_uc003jmi.3_Missense_Mutation_p.G207E	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	652							binding			ovary(6)|central_nervous_system(2)	8						AGATGTTATTCCCTAAAATCA	0.209													5	27					0	0	0.000602214	0	0
SEPP1	6414	broad.mit.edu	37	5	42804833	42804833	+	RNA	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:42804833G>A	uc011cps.1	-	5		c.647C>T			SEPP1_uc011cpt.1_RNA|SEPP1_uc011cpu.1_RNA|SEPP1_uc011cpv.1_RNA|SEPP1_uc003jna.2_RNA			P49908	SEPP1_HUMAN	Homo sapiens cDNA FLJ37321 fis, clone BRAMY2018122.						response to oxidative stress	extracellular region	selenium binding				0						GGAAAGTTAGGAAGGAAAAAG	0.353													10	44					0	0	6.40141e-05	0	0
CDC20B	166979	broad.mit.edu	37	5	54420676	54420676	+	Silent	SNP	T	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:54420676T>G	uc003jpo.1	-	9	1345	c.1170A>C	c.(1168-1170)GCA>GCC	p.A390A	CDC20B_uc003jpn.1_Silent_p.A390A|CDC20B_uc010ivu.1_Silent_p.A390A|CDC20B_uc010ivv.1_3'UTR	NM_152623	NP_689836	Q86Y33	CD20B_HUMAN	CDC20 cell division cycle 20 homolog B isoform	390	WD 4.										0		Lung NSC(810;0.000744)|Breast(144;0.159)|Prostate(74;0.194)	LUSC - Lung squamous cell carcinoma(15;0.225)			GTTGGCCCTGTGCACTGGCAC	0.542													3	45					0	0	0.00024832	0	0
IL31RA	133396	broad.mit.edu	37	5	55147444	55147444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:55147444G>A	uc003jql.2	+	1	111	c.46G>A	c.(46-48)GAA>AAA	p.E16K	IL31RA_uc003jqk.2_Missense_Mutation_p.E16K|IL31RA_uc011cqj.1_5'UTR|IL31RA_uc003jqm.2_5'UTR|IL31RA_uc003jqn.2_Missense_Mutation_p.E16K|IL31RA_uc010iwa.1_5'Flank|IL31RA_uc003jqo.2_5'Flank	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	Error:Variant_position_missing_in_Q8NI17_after_alignment					anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				atgtgtctgtgaatgtccgca	0													34	128					0	0	0.000953801	0	0
DMGDH	29958	broad.mit.edu	37	5	78338268	78338268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:78338268C>T	uc003kfs.2	-	7	1037	c.1031G>A	c.(1030-1032)CGA>CAA	p.R344Q	DMGDH_uc011cte.1_Missense_Mutation_p.R194Q|DMGDH_uc011ctf.1_Missense_Mutation_p.R143Q|DMGDH_uc011ctg.1_Intron	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	344					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		TTCCATGATTCGATCTAGATC	0.428													22	55					0	0	0.000184323	0	0
THBS4	7060	broad.mit.edu	37	5	79366551	79366551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:79366551G>A	uc003kgh.2	+	13	1861	c.1538G>A	c.(1537-1539)GGA>GAA	p.G513E	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	513	TSP type-3 2.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		GATGCTGACGGAGATGGGATC	0.517													24	56					0	0	0.000878237	0	0
GPR98	84059	broad.mit.edu	37	5	89990440	89990440	+	Missense_Mutation	SNP	G	A	A	rs146526977	by1000genomes	TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:89990440G>A	uc003kju.2	+	33	7963	c.7867G>A	c.(7867-7869)GAA>AAA	p.E2623K	GPR98_uc003kjt.2_Missense_Mutation_p.E329K|GPR98_uc003kjv.2_Missense_Mutation_p.E223K	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2623	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGTGGCAGTCGAATGGCGTGT	0.473													10	55					0	0	0.000442599	0	0
GPR98	84059	broad.mit.edu	37	5	89992806	89992806	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:89992806G>A	uc003kju.2	+	34	8094	c.7998G>A	c.(7996-7998)GAG>GAA	p.E2666E	GPR98_uc003kjt.2_Silent_p.E372E|GPR98_uc003kjv.2_Silent_p.E266E	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2666	Calx-beta 18.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CTGAACCAGAGGATGACGAAA	0.373													9	40					0	0	0.000673444	0	0
CHD1	1105	broad.mit.edu	37	5	98235231	98235231	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:98235231C>A	uc003knf.2	-	7	1186	c.1038G>T	c.(1036-1038)ATG>ATT	p.M346I		NM_001270	NP_001261	O14646	CHD1_HUMAN	chromodomain helicase DNA binding protein 1	346	Chromo 1.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|methylated histone residue binding			lung(2)|ovary(1)|breast(1)|pancreas(1)	5		all_cancers(142;5.36e-08)|all_epithelial(76;6.97e-11)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|all_lung(232;0.00119)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0717)	Epirubicin(DB00445)	CCAATTTTTTCATTCCTCTAA	0.323													38	75					9.73076e-26	1.13703e-24	0.000270559	1	0
APC	324	broad.mit.edu	37	5	112176863	112176863	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:112176863C>T	uc010jby.2	+	16	5952	c.5572C>T	c.(5572-5574)CGA>TGA	p.R1858*	APC_uc011cvt.1_Nonsense_Mutation_p.R1840*|APC_uc003kpz.3_Nonsense_Mutation_p.R1858*|APC_uc003kpy.3_Nonsense_Mutation_p.R1858*|APC_uc010jbz.2_Nonsense_Mutation_p.R1575*|APC_uc010jca.2_Nonsense_Mutation_p.R1158*	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1858	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.K1192fs*3(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		CTGTTTTTCACGAAATGATTC	0.358		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			10	26					0	0	0.000442599	0	0
P4HA2	8974	broad.mit.edu	37	5	131539494	131539494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:131539494G>A	uc003kwh.2	-	10	1762	c.1198C>T	c.(1198-1200)CGT>TGT	p.R400C	P4HA2_uc003kwg.2_Missense_Mutation_p.R400C|P4HA2_uc003kwi.2_Missense_Mutation_p.R400C|P4HA2_uc003kwk.2_Missense_Mutation_p.R400C|P4HA2_uc003kwl.2_Missense_Mutation_p.R400C|P4HA2_uc003kwj.2_Missense_Mutation_p.R400C	NM_004199	NP_004190	O15460	P4HA2_HUMAN	prolyl 4-hydroxylase, alpha II subunit isoform 1	400						endoplasmic reticulum lumen	electron carrier activity|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity|protein binding				0		all_cancers(142;0.103)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Proline(DB00172)|Succinic acid(DB00139)	TGCATCCGACGATTTACTCGG	0.483													7	13					0	0	0.000442599	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188125	140188125	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:140188125C>T	uc003lhi.2	+	1	1454	c.1353C>T	c.(1351-1353)AAC>AAT	p.N451N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Silent_p.N451N|PCDHA4_uc011daa.1_Silent_p.N451N	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	451	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAACGACAACGCTCCGGCGT	0.647													12	34					0	0	6.40141e-05	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475592	140475592	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:140475592G>A	uc003lil.2	+	1	1356	c.1218G>A	c.(1216-1218)GTG>GTA	p.V406V	PCDHB2_uc003lim.1_Silent_p.V67V	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	406	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACACTCTGGTGATAAGCACGG	0.502													14	36					0	0	0.000422831	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140737112	140737112	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:140737112G>C	uc003ljq.1	+	1	2345	c.2345G>C	c.(2344-2346)CGG>CCG	p.R782P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGB2_uc003ljs.1_5'Flank|PCDHGA4_uc003ljp.1_Missense_Mutation_p.R782P|PCDHGB2_uc011dar.1_5'Flank	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	782	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCATCAGCCGGGAGAGTTGT	0.493													4	58					0	0	0.000602214	0	0
SH3TC2	79628	broad.mit.edu	37	5	148406203	148406203	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:148406203C>T	uc003lpu.2	-	12	3137	c.2985G>A	c.(2983-2985)AGG>AGA	p.R995R	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc010jgw.2_Silent_p.R639R|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_Silent_p.R542R|SH3TC2_uc010jgx.2_Silent_p.R988R|SH3TC2_uc003lpv.1_Missense_Mutation_p.G578E|SH3TC2_uc011dbz.1_Missense_Mutation_p.G916E	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	995							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTCCCGGTCCCTGAGTTGCT	0.577													16	44					0	0	0.00074312	0	0
GRIA1	2890	broad.mit.edu	37	5	153054092	153054092	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:153054092G>A	uc003lva.3	+	6	1097	c.732G>A	c.(730-732)AAG>AAA	p.K244K	GRIA1_uc003luy.3_Silent_p.K244K|GRIA1_uc003luz.3_Silent_p.K149K|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.K164K|GRIA1_uc011dcx.1_Silent_p.K175K|GRIA1_uc011dcy.1_Silent_p.K254K|GRIA1_uc011dcz.1_Silent_p.K254K|GRIA1_uc010jia.1_Silent_p.K224K	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	244	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	ACAAATTCAAGGAGAGTGGCG	0.478													40	108					0	0	0.000781405	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178552086	178552086	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:178552086T>G	uc003mjw.2	-	19	2846	c.2846A>C	c.(2845-2847)AAC>ACC	p.N949T		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	949	TSP type-1 3.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		GCGGGTGGTGTTGTCGTGTAG	0.697													3	60					0	0	0.000602214	0	0
HUS1B	135458	broad.mit.edu	37	6	656256	656256	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:656256C>G	uc003mtg.2	-	1	709	c.689G>C	c.(688-690)CGG>CCG	p.R230P	EXOC2_uc003mtd.2_Intron|EXOC2_uc003mte.2_Intron|EXOC2_uc011dho.1_Intron	NM_148959	NP_683762	Q8NHY5	HUS1B_HUMAN	HUS1 checkpoint protein B	230											0	Ovarian(93;0.0733)	Breast(5;0.00139)|all_lung(73;0.0691)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.041)|BRCA - Breast invasive adenocarcinoma(62;0.0965)		ATTGTCCACCCGCACTTGCAC	0.483													5	232					0	0	0.000602214	0	0
SLC17A2	10246	broad.mit.edu	37	6	25923937	25923937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:25923937C>T	uc011dkb.1	-	2	309	c.226G>A	c.(226-228)GAA>AAA	p.E76K	SLC17A2_uc011dkc.1_Missense_Mutation_p.E76K|SLC17A2_uc003nfl.2_Missense_Mutation_p.E76K			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	76					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						GTATCAAATTCCTTGATGGAT	0.433													105	147					0	0	0.000781405	0	0
BTN3A1	11119	broad.mit.edu	37	6	26407969	26407969	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:26407969C>T	uc003nhv.2	+	4	872	c.504C>T	c.(502-504)TCC>TCT	p.S168S	BTN3A1_uc011dkj.1_Silent_p.S168S|BTN3A1_uc011dkk.1_Intron|BTN3A1_uc010jqj.2_Silent_p.S168S	NM_007048	NP_008979	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1 isoform a	168	Ig-like V-type 2.|Extracellular (Potential).				lipid metabolic process	integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						AGTGCAGGTCCACTGGCTGGT	0.522													11	74					0	0	6.40141e-05	0	0
TRIM27	5987	broad.mit.edu	37	6	28872284	28872284	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:28872284C>A	uc003nlr.2	-	8	1464	c.1105G>T	c.(1105-1107)GGG>TGG	p.G369W	TRIM27_uc003nls.2_Intron|TRIM27_uc003nlt.1_3'UTR	NM_006510	NP_006501	P14373	TRI27_HUMAN	ret finger protein	369	B30.2/SPRY.				cell proliferation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|protein trimerization|spermatogenesis|transcription, DNA-dependent	cytoplasm|integral to plasma membrane|membrane fraction|nuclear membrane|PML body	DNA binding|protein binding|transmembrane receptor protein tyrosine kinase activity|zinc ion binding			ovary(1)	1						TAATGTCTCCCGGCGATGAAG	0.542			T	RET	papillary thyroid								6	58					0.000157383	0.00180488	0.000157383	1	0
OR12D2	26529	broad.mit.edu	37	6	29364640	29364640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:29364640C>T	uc003nmf.3	+	1	225	c.164C>T	c.(163-165)TCC>TTC	p.S55F		NM_013936	NP_039224	P58182	O12D2_HUMAN	olfactory receptor, family 12, subfamily D,	55	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AGACTCCATTCCCTTATGTAT	0.453													50	46					0	0	0.000781405	0	0
NOTCH4	4855	broad.mit.edu	37	6	32178596	32178596	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:32178596G>C	uc003obb.2	-	18	2937	c.2798C>G	c.(2797-2799)CCA>CGA	p.P933R	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	933	Extracellular (Potential).|EGF-like 24.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GGACTCACATGGGTTCACGTG	0.622													4	169					0	0	3.59834e-05	0	0
KIAA0240	23506	broad.mit.edu	37	6	42797269	42797269	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:42797269C>T	uc003osn.1	+	6	1349	c.1198C>T	c.(1198-1200)CAG>TAG	p.Q400*	KIAA0240_uc003osm.1_Nonsense_Mutation_p.Q400*|KIAA0240_uc011duw.1_Nonsense_Mutation_p.Q400*|KIAA0240_uc003oso.1_Nonsense_Mutation_p.Q400*|KIAA0240_uc003osp.1_Nonsense_Mutation_p.Q400*	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	400										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			ACCCCAAAGTCAGTTCCTTAT	0.498													76	187					0	0	0.000781405	0	0
C6orf153	88745	broad.mit.edu	37	6	42995176	42995176	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:42995176C>G	uc003otp.1	+	6	612	c.604C>G	c.(604-606)CAG>GAG	p.Q202E		NM_033112	NP_149103	Q96EU6	RRP36_HUMAN	hypothetical protein LOC88745	202	Potential.				ribosomal small subunit biogenesis|rRNA processing	nucleolus					0			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			ACGTCGGGCTCAGGCCCAGCA	0.567													14	36					0	0	0.000151284	0	0
CD2AP	23607	broad.mit.edu	37	6	47541892	47541892	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:47541892C>T	uc003oyw.2	+	6	1090	c.634C>T	c.(634-636)CGA>TGA	p.R212*		NM_012120	NP_036252	Q9Y5K6	CD2AP_HUMAN	CD2-associated protein	212					cell division|mitosis|protein complex assembly|signal transduction|substrate-dependent cell migration, cell extension	cytoplasm|filamentous actin|nucleolus|plasma membrane|ruffle	SH3 domain binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2			Lung(136;0.105)|LUSC - Lung squamous cell carcinoma(51;0.138)			AAAGAAAATTCGAGGAATTGG	0.408													28	104					0	0	0.000184323	0	0
IL17A	3605	broad.mit.edu	37	6	52053993	52053993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:52053993G>A	uc003pak.1	+	3	416	c.371G>A	c.(370-372)AGG>AAG	p.R124K		NM_002190	NP_002181	Q16552	IL17_HUMAN	interleukin 17A precursor	124					apoptosis|cell-cell signaling|fibroblast activation|immune response|inflammatory response|positive regulation of interleukin-23 production|positive regulation of osteoclast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein glycosylation	extracellular space	cytokine activity				0	Lung NSC(77;0.116)					GTCCTGCGCAGGGAGCCTCCA	0.597													14	31					0	0	0.00074312	0	0
COL19A1	1310	broad.mit.edu	37	6	70856589	70856589	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:70856589G>A	uc003pfc.1	+	26	1926	c.1809G>A	c.(1807-1809)GGG>GGA	p.G603G	COL19A1_uc010kam.1_Silent_p.G499G	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	603	Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						GTCCACGTGGGCCAAAGGTAT	0.323													10	43					0	0	6.40141e-05	0	0
COL12A1	1303	broad.mit.edu	37	6	75823424	75823424	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:75823424C>T	uc003phs.2	-	50	7900	c.7734G>A	c.(7732-7734)ACG>ACA	p.T2578T	COL12A1_uc003pht.2_Silent_p.T1414T	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2578	TSP N-terminal.|Nonhelical region (NC3).				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						ATAATATAATCGTGTATGAAG	0.313													13	27					0	0	0.000308642	0	0
HACE1	57531	broad.mit.edu	37	6	105178179	105178179	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:105178179A>G	uc003pqu.1	-	23	2903	c.2626T>C	c.(2626-2628)TGC>CGC	p.C876R	HACE1_uc010kcy.1_Missense_Mutation_p.C358R|HACE1_uc010kcz.1_Missense_Mutation_p.C661R|HACE1_uc010kcx.1_Missense_Mutation_p.C285R|HACE1_uc003pqt.1_Missense_Mutation_p.C529R	NM_020771	NP_065822	Q8IYU2	HACE1_HUMAN	HECT domain and ankyrin repeat containing, E3	876	HECT.	Glycyl thioester intermediate.		C->S: Loss of E3 ubiquitin ligase activity.	protein ubiquitination involved in ubiquitin-dependent protein catabolic process	endoplasmic reticulum	ubiquitin-protein ligase activity			ovary(5)|lung(2)	7		all_cancers(87;6.89e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0216)|Colorectal(196;0.202)		BRCA - Breast invasive adenocarcinoma(108;0.122)|Epithelial(106;0.204)		TCAACATACCATGTGCTTGAA	0.368													10	32					0	0	0.000442599	0	0
KPNA5	3841	broad.mit.edu	37	6	117047683	117047683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:117047683C>T	uc003pxh.2	+	12	1282	c.1151C>T	c.(1150-1152)CCT>CTT	p.P384L		NM_002269	NP_002260	O15131	IMA5_HUMAN	karyopherin alpha 5	381	NLS binding site (minor) (By similarity).|ARM 8.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding|protein transporter activity	p.P384S(1)		breast(3)|skin(1)	4		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0298)|all cancers(137;0.0461)|OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.212)		AATATTTTTCCTGTTTTGATT	0.338													22	97					0	0	0.000586117	0	0
C6orf204	387119	broad.mit.edu	37	6	118886920	118886920	+	Silent	SNP	G	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:118886920G>C	uc003pxz.1	-	3	1380	c.792C>G	c.(790-792)CCC>CCG	p.P264P	C6orf204_uc003pya.1_Silent_p.P267P|C6orf204_uc003pyb.2_Silent_p.P264P|C6orf204_uc011ebj.1_Silent_p.P162P|C6orf204_uc003pyc.2_Silent_p.P267P|C6orf204_uc011ebl.1_Silent_p.P162P	NM_001042475	NP_001035940	Q5SZL2	CF204_HUMAN	chromosome 6 open reading frame 204 isoform a	264						centrosome				breast(1)	1		all_cancers(87;0.0814)|all_epithelial(87;0.115)		GBM - Glioblastoma multiforme(226;0.0114)|all cancers(137;0.035)|OV - Ovarian serous cystadenocarcinoma(136;0.0618)		TTGTCATAATGGGCTTGCTTT	0.453													4	98					0	0	0.000602214	0	0
NKAIN2	154215	broad.mit.edu	37	6	124604171	124604171	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:124604171A>C	uc003pzo.2	+	2	352	c.75A>C	c.(73-75)CAA>CAC	p.Q25H	NKAIN2_uc003pzn.1_Missense_Mutation_p.Q25H|NKAIN2_uc003pzp.2_Missense_Mutation_p.Q24H|NKAIN2_uc010keq.2_Missense_Mutation_p.Q25H|NKAIN2_uc010ker.2_5'UTR|NKAIN2_uc010kep.1_RNA	NM_001040214	NP_001035304	Q5VXU1	NKAI2_HUMAN	T-cell lymphoma breakpoint-associated target 1	25						integral to membrane|plasma membrane					0				GBM - Glioblastoma multiforme(226;0.104)		TGGAGAGGCAAATATTTGACT	0.373													19	132					0	0	0.000175454	0	0
LAMA2	3908	broad.mit.edu	37	6	129637294	129637294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:129637294G>A	uc003qbn.2	+	27	4141	c.4036G>A	c.(4036-4038)GGA>AGA	p.G1346R	LAMA2_uc003qbo.2_Missense_Mutation_p.G1346R	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1346	Laminin IV type A 2.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AGCTACTTATGGAAATTTCAT	0.338													12	65					0	0	6.40141e-05	0	0
MOXD1	26002	broad.mit.edu	37	6	132636902	132636902	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr6:132636902G>A	uc003qdf.2	-	10	1479	c.1380C>T	c.(1378-1380)ACC>ACT	p.T460T	MOXD1_uc003qde.2_Silent_p.T392T	NM_015529	NP_056344	Q6UVY6	MOXD1_HUMAN	monooxygenase, DBH-like 1 isoform 2	460	Lumenal (Potential).				catecholamine metabolic process	endoplasmic reticulum membrane|integral to membrane	copper ion binding|dopamine beta-monooxygenase activity			ovary(1)	1	Breast(56;0.0495)			OV - Ovarian serous cystadenocarcinoma(155;0.0132)|GBM - Glioblastoma multiforme(226;0.0191)		TTTCACTCCTGGTGCTTAGTC	0.358													37	82					0	0	0.000319135	0	0
GET4	51608	broad.mit.edu	37	7	925732	925732	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:925732C>T	uc003sjl.1	+	2	287	c.195C>T	c.(193-195)CTC>CTT	p.L65L	GET4_uc003sjj.1_RNA	NM_015949	NP_057033	Q7L5D6	GET4_HUMAN	hypothetical protein LOC51608	65					tail-anchored membrane protein insertion into ER membrane|transport	BAT3 complex	protein binding				0						CCCGGGAGCTCATGTACTCGG	0.652													11	27					0	0	0.00010058	0	0
THSD7A	221981	broad.mit.edu	37	7	11468738	11468738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:11468738C>T	uc003ssf.3	-	14	3331	c.3079G>A	c.(3079-3081)GCC>ACC	p.A1027T		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1027	TSP type-1 10.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		ATGATGCAGGCCTCCTCAATG	0.512										HNSCC(18;0.044)			18	49					0	0	0.00074312	0	0
ETV1	2115	broad.mit.edu	37	7	13946092	13946092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:13946092C>T	uc011jxq.1	-	12	1812	c.1073G>A	c.(1072-1074)GGT>GAT	p.G358D	ETV1_uc011jxn.1_Missense_Mutation_p.G318D|ETV1_uc011jxo.1_Missense_Mutation_p.G255D|ETV1_uc011jxp.1_Missense_Mutation_p.G300D|ETV1_uc003ssw.3_Missense_Mutation_p.G335D|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Missense_Mutation_p.G340D|ETV1_uc011jxs.1_Missense_Mutation_p.G340D|ETV1_uc010ktv.2_3'UTR	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	358	ETS.				transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						CATGCCTCGACCAGTCCAGGC	0.408			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								7	20					0	0	0.000274275	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18066521	18066521	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:18066521G>A	uc003stz.2	-	1	966	c.885C>T	c.(883-885)ATC>ATT	p.I295I		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	295					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					CTTCTGCAAGGATCATGGAGA	0.398													46	197					0	0	0.000781405	0	0
DNAH11	8701	broad.mit.edu	37	7	21723495	21723495	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:21723495C>A	uc003svc.2	+	33	5606	c.5575C>A	c.(5575-5577)CAG>AAG	p.Q1859K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1859	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TTGTGATGCCCAGTTCCAGTA	0.438									Kartagener_syndrome				9	154					0.000673444	0.00764428	0.000673444	1	0
NFE2L3	9603	broad.mit.edu	37	7	26224889	26224890	+	Missense_Mutation	DNP	GG	AA	AA	rs138591487		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:26224889_26224890GG>AA	uc003sxq.2	+	4	1843_1844	c.1571_1572GG>AA	c.(1570-1572)AGG>AAA	p.R524K		NM_004289	NP_004280	Q9Y4A8	NF2L3_HUMAN	nuclear factor erythroid 2-like 3	524					transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			skin(3)|ovary(1)	4						CAGAAGATAAGGAGTAGATACC	0.431													11	62					0	0	6.4e-05	0	0
TARP	445347	broad.mit.edu	37	7	38305255	38305255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:38305255G>A	uc003tge.1	-	5	829	c.452C>T	c.(451-453)TCC>TTC	p.S151F	uc003tfz.1_Intron|TARP_uc003tgb.2_5'UTR|TARP_uc003tgc.1_5'UTR|TARP_uc003tgd.1_5'UTR|TARP_uc010kxi.1_RNA|TARP_uc003tgf.1_RNA|TARP_uc003tgj.1_RNA|TARP_uc003tgh.1_RNA|TARP_uc003tgi.1_RNA|TARP_uc003tgg.1_RNA			A2JGV3	A2JGV3_HUMAN	Homo sapiens TCRgamma alternate reading frame protein (TCRg) mRNA, complete cds.	Error:Variant_position_missing_in_A2JGV3_after_alignment											0						GGGCTTGGGGGAAACATCTGC	0.378													46	126					0	0	0.000781405	0	0
AMPH	273	broad.mit.edu	37	7	38543259	38543259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:38543259C>T	uc003tgu.2	-	3	265	c.196G>A	c.(196-198)GCA>ACA	p.A66T	AMPH_uc003tgv.2_Missense_Mutation_p.A66T	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	66	BAR.|Potential.				endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						CCTTTGATTGCTGCTAAATAT	0.388													18	51					0	0	0.000175454	0	0
ABCA13	154664	broad.mit.edu	37	7	48266947	48266947	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:48266947C>A	uc003toq.2	+	6	582	c.557C>A	c.(556-558)CCG>CAG	p.P186Q	ABCA13_uc003top.2_Missense_Mutation_p.P186Q|ABCA13_uc010kyr.2_5'UTR	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	186					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CTTTTACTGCCGAGACTACAC	0.418													6	104					8.12818e-05	0.000934069	8.12818e-05	1	0
CACNA2D1	781	broad.mit.edu	37	7	81591790	81591790	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:81591790G>A	uc003uhr.1	-	35	3058	c.2802C>T	c.(2800-2802)CTC>CTT	p.L934L	CACNA2D1_uc011kgy.1_Silent_p.L146L	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	946	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	TCAAACTCAAGAGAAACTGCT	0.333													5	21					0	0	3.59834e-05	0	0
PCLO	27445	broad.mit.edu	37	7	82544610	82544610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:82544610G>A	uc003uhx.2	-	7	12981	c.12692C>T	c.(12691-12693)TCC>TTC	p.S4231F	PCLO_uc003uhv.2_Missense_Mutation_p.S4231F|PCLO_uc010lec.2_Missense_Mutation_p.S1196F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4162					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGCCCTGGAGGAAATGCCACC	0.388													10	44					0	0	6.40141e-05	0	0
COL1A2	1278	broad.mit.edu	37	7	94050342	94050342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:94050342C>T	uc003ung.1	+	38	2788	c.2317C>T	c.(2317-2319)CCT>TCT	p.P773S	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	773			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TCCCCCCGGTCCTGCTGGAAG	0.433										HNSCC(75;0.22)			16	59					0	0	9.7654e-05	0	0
ZNF394	84124	broad.mit.edu	37	7	99097265	99097265	+	Missense_Mutation	SNP	G	A	A	rs143330361		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:99097265G>A	uc003uqs.2	-	1	613	c.452C>T	c.(451-453)TCC>TTC	p.S151F	ZNF394_uc003uqt.2_5'UTR|ZNF394_uc003uqu.1_Missense_Mutation_p.S151F	NM_032164	NP_115540	Q53GI3	ZN394_HUMAN	zinc finger protein 394	151					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					TCTCACCTGGGATGAGGTTCC	0.592													23	98					0	0	0.000878237	0	0
ZKSCAN5	23660	broad.mit.edu	37	7	99129273	99129273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:99129273G>A	uc003uqv.2	+	7	2045	c.1921G>A	c.(1921-1923)GGC>AGC	p.G641S	ZKSCAN5_uc010lfx.2_Missense_Mutation_p.G641S|ZKSCAN5_uc003uqw.2_Missense_Mutation_p.G641S|ZKSCAN5_uc003uqx.2_Missense_Mutation_p.G568S|ZKSCAN5_uc003uqy.2_Missense_Mutation_p.G377S	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	641	C2H2-type 8.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					ATGTGGGAAAGGCTTTGGGAG	0.522													11	23					0	0	6.40141e-05	0	0
SLC26A5	375611	broad.mit.edu	37	7	103029778	103029778	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:103029778G>A	uc003vbz.2	-	13	1641	c.1405C>T	c.(1405-1407)CTG>TTG	p.L469L	SLC26A5_uc003vbt.1_Silent_p.L469L|SLC26A5_uc003vbu.1_Silent_p.L469L|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Intron|SLC26A5_uc003vby.2_Intron|SLC26A5_uc010liy.2_Intron	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	469	Extracellular (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						TTACTTACCAGCTCTATTTTG	0.393													21	57					0	0	0.000375601	0	0
MEST	4232	broad.mit.edu	37	7	130137004	130137005	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:130137004_130137005GG>TT	uc003vqg.2	+	3	406_407	c.189_190GG>TT	c.(187-192)GTGGGT>GTTTGT	p.G64C	MEST_uc003vqc.2_Missense_Mutation_p.G55C|MEST_uc003vqd.2_Missense_Mutation_p.G55C|MEST_uc003vqf.2_Missense_Mutation_p.G55C|MEST_uc011kph.1_Missense_Mutation_p.G50C|MEST_uc010lmg.2_Missense_Mutation_p.G64C	NM_002402	NP_002393	Q5EB52	MEST_HUMAN	mesoderm specific transcript isoform a	64	Helical; (Potential).				mesoderm development	endoplasmic reticulum membrane|integral to membrane	hydrolase activity|protein binding			ovary(2)	2	Melanoma(18;0.0435)					TAGACTCTGTGGGTGTGGTTGG	0.386													14	535					0	0	6.4e-05	0	0
PLXNA4	91584	broad.mit.edu	37	7	131878935	131878935	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:131878935G>A	uc003vra.3	-	14	2971	c.2742C>T	c.(2740-2742)ATC>ATT	p.I914I		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	914	IPT/TIG 1.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TCTCACACACGATCCTGCAGG	0.607													14	54					0	0	0.000308642	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138406692	138406692	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:138406692G>C	uc003vuf.2	-	18	2327	c.2089C>G	c.(2089-2091)CAG>GAG	p.Q697E	ATP6V0A4_uc003vug.2_Missense_Mutation_p.Q697E|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.Q697E	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	697	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						GAAGTCCTCTGGCCAGAACGG	0.537													3	34					0	0	6.4e-05	0	0
KIAA1549	57670	broad.mit.edu	37	7	138602891	138602891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:138602891G>A	uc011kql.1	-	2	1530	c.1481C>T	c.(1480-1482)TCT>TTT	p.S494F	KIAA1549_uc003vuk.3_Missense_Mutation_p.S444F|KIAA1549_uc011kqj.1_Missense_Mutation_p.S494F	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	494	Ser-rich.					integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GGATCTAGAAGAAAGTGGGAC	0.483			O	BRAF	pilocytic astrocytoma								9	15					0	0	0.000274275	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453137	+	Missense_Mutation	DNP	AC	TT	TT	rs121913378		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:140453136_140453137AC>TT	uc003vwc.3	-	15	1859_1860	c.1798_1799GT>AA	c.(1798-1800)GTG>AAG	p.V600K		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAGA	0.366	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)|V600M(IGR1_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				16	43					0	0	6.4e-05	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146829450	146829450	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:146829450C>T	uc003weu.1	+	8	1713	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	399	Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CAGTCAGTTTCCAGTTTAGGA	0.493										HNSCC(39;0.1)			15	20					0	0	0.000308642	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389789	150389789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:150389789G>A	uc003who.2	+	3	503	c.415G>A	c.(415-417)GGA>AGA	p.G139R	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	139						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGATGCCATGGGACACACAAT	0.537													10	25					0	0	0.000673444	0	0
ABCB8	11194	broad.mit.edu	37	7	150725644	150725644	+	Silent	SNP	A	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:150725644A>C	uc003wil.3	+	1	135	c.42A>C	c.(40-42)CCA>CCC	p.P14P	ABCB8_uc003wii.2_Silent_p.P14P|ABCB8_uc003wij.3_Silent_p.P14P|ABCB8_uc010lpw.1_5'UTR|ABCB8_uc010lpx.2_Silent_p.P14P|ABCB8_uc011kvd.1_Missense_Mutation_p.I31L|ABCB8_uc003wim.3_5'UTR|ABCB8_uc003wik.3_Silent_p.P14P	NM_007188	NP_009119	Q9NUT2	ABCB8_HUMAN	ATP-binding cassette, sub-family B, member 8	14						ATP-binding cassette (ABC) transporter complex|integral to membrane|membrane fraction|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGGGTGGCCCATTCCCAGGCA	0.587											OREG0018445	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	23					0	0	0.000157383	0	0
NAT2	10	broad.mit.edu	37	8	18257721	18257721	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr8:18257721C>T	uc003wyw.1	+	2	315	c.208C>T	c.(208-210)CAG>TAG	p.Q70*		NM_000015	NP_000006	P11245	ARY2_HUMAN	N-acetyltransferase 2	70					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity			ovary(1)|skin(1)	2				Colorectal(111;0.0531)|COAD - Colon adenocarcinoma(73;0.21)		GTGGTGTCTCCAGGTCAATCA	0.453									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				15	65					0	0	0.000422831	0	0
RHOBTB2	23221	broad.mit.edu	37	8	22864685	22864685	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr8:22864685G>A	uc003xcq.2	+	5	1464	c.927G>A	c.(925-927)TCG>TCA	p.S309S	RHOBTB2_uc003xcp.2_Silent_p.S331S|RHOBTB2_uc011kzp.1_Silent_p.S316S|uc003xcr.2_RNA	NM_015178	NP_055993	Q9BYZ6	RHBT2_HUMAN	Rho-related BTB domain containing 2 isoform 3	309	BTB 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			ovary(1)|lung(1)	2		Prostate(55;0.0513)|Breast(100;0.214)		Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		GGGGCCCCTCGGAGCCAGGGG	0.537													14	37					0	0	0.000219431	0	0
LOXL2	4017	broad.mit.edu	37	8	23225580	23225580	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr8:23225580G>A	uc003xdh.1	-	2	624	c.285C>T	c.(283-285)GTC>GTT	p.V95V		NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	95	SRCR 1.				aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		CCCGGCAGACGACGTGGGCAG	0.622													5	26					0	0	8.12818e-05	0	0
EBF2	64641	broad.mit.edu	37	8	25766038	25766038	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr8:25766038C>T	uc003xes.1	-	7	602	c.585G>A	c.(583-585)CAG>CAA	p.Q195Q	PPP2R2A_uc003xek.2_Intron	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	195					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		TCAAACAATTCTGATTGCACT	0.373													8	31					0	0	0.000673444	0	0
TACC1	6867	broad.mit.edu	37	8	38677795	38677795	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr8:38677795C>T	uc010lwp.2	+	3	1412	c.1033C>T	c.(1033-1035)CTG>TTG	p.L345L	TACC1_uc011lby.1_Silent_p.L150L|TACC1_uc003xma.2_Intron|TACC1_uc003xlz.2_Silent_p.L150L|TACC1_uc003xmc.3_Silent_p.L150L|TACC1_uc011lbz.1_Silent_p.L361L|TACC1_uc003xmb.3_Silent_p.L300L|TACC1_uc003xme.1_Intron|TACC1_uc003xmd.1_Intron|TACC1_uc010lwo.1_Intron|TACC1_uc003xmf.3_Intron|TACC1_uc011lca.1_Silent_p.L345L|TACC1_uc011lcb.1_Silent_p.L150L|TACC1_uc011lcc.1_Silent_p.L150L|TACC1_uc011lcd.1_RNA|TACC1_uc003xmh.3_Silent_p.L150L|TACC1_uc010lwq.2_Silent_p.L150L	NM_006283	NP_006274	O75410	TACC1_HUMAN	transforming, acidic coiled-coil containing	345	Interaction with YEATS4.				cell cycle|cell division	intermediate filament cytoskeleton|microtubule organizing center|nucleus	protein binding			ovary(1)	1		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.065)	LUSC - Lung squamous cell carcinoma(45;1.7e-09)|COAD - Colon adenocarcinoma(9;0.235)			TGGCAGGAAACTGGGTAGCAC	0.507													23	67					0	0	0.000295444	0	0
ST18	9705	broad.mit.edu	37	8	53073993	53073993	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr8:53073993G>A	uc003xqz.2	-	9	1692	c.1536C>T	c.(1534-1536)TTC>TTT	p.F512F	ST18_uc011ldq.1_Silent_p.F159F|ST18_uc011ldr.1_Silent_p.F477F|ST18_uc011lds.1_Silent_p.F417F|ST18_uc003xra.2_Silent_p.F512F|ST18_uc003xrb.2_Silent_p.F512F	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	512						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				GGCGTTTACCGAAAACTTGGG	0.438													20	72					0	0	0.000375601	0	0
RIMS2	9699	broad.mit.edu	37	8	105260938	105260938	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr8:105260938C>T	uc003yls.2	+	25	3781	c.3540C>T	c.(3538-3540)TTC>TTT	p.F1180F	RIMS2_uc003ylp.2_Silent_p.F1162F|RIMS2_uc003ylw.2_Silent_p.F1169F|RIMS2_uc003ylq.2_Silent_p.F976F|RIMS2_uc003ylr.2_Silent_p.F1001F	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1224					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GTCTGATTTTCCCTGGTGTTC	0.463										HNSCC(12;0.0054)			18	60					0	0	9.7654e-05	0	0
TRHR	7201	broad.mit.edu	37	8	110100269	110100269	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr8:110100269G>A	uc003ymz.3	+	1	544	c.528G>A	c.(526-528)GTG>GTA	p.V176V		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	176	Extracellular (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			ATGCTATTGTGATATCCTGTG	0.403													12	59					0	0	0.000151284	0	0
CSMD3	114788	broad.mit.edu	37	8	113277712	113277712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr8:113277712C>T	uc003ynu.2	-	60	9775	c.9616G>A	c.(9616-9618)GAA>AAA	p.E3206K	CSMD3_uc003yns.2_Missense_Mutation_p.E2408K|CSMD3_uc003ynt.2_Missense_Mutation_p.E3166K|CSMD3_uc011lhx.1_Missense_Mutation_p.E3037K	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3206	Extracellular (Potential).|Sushi 24.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CCATTCAATTCCATCGTGTAG	0.413										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			22	87					0	0	0.000229342	0	0
CSMD3	114788	broad.mit.edu	37	8	113323316	113323316	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr8:113323316G>A	uc003ynu.2	-	50	7935	c.7776C>T	c.(7774-7776)GTC>GTT	p.V2592V	CSMD3_uc003yns.2_Silent_p.V1794V|CSMD3_uc003ynt.2_Silent_p.V2552V|CSMD3_uc011lhx.1_Silent_p.V2488V|CSMD3_uc003ynw.1_Silent_p.V303V	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2592	Extracellular (Potential).|Sushi 14.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGGCCCAACGGACCACACTGT	0.463										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			16	47					0	0	0.000132079	0	0
BAI1	575	broad.mit.edu	37	8	143623570	143623570	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr8:143623570C>G	uc003ywm.2	+	27	4158	c.3975C>G	c.(3973-3975)ATC>ATG	p.I1325M		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	1325	Cytoplasmic (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					ACGGGGACATCTTCAAGAAGC	0.672													16	47					0	0	0.000175454	0	0
TSTA3	7264	broad.mit.edu	37	8	144697003	144697003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr8:144697003G>A	uc003yza.2	-	4	380	c.344C>T	c.(343-345)ACC>ATC	p.T115I	TSTA3_uc003yzb.2_Missense_Mutation_p.T115I|TSTA3_uc011lko.1_Missense_Mutation_p.T115I	NM_003313	NP_003304	Q13630	FCL_HUMAN	tissue specific transplantation antigen P35B	115					'de novo' GDP-L-fucose biosynthetic process|leukocyte cell-cell adhesion		coenzyme binding|electron carrier activity|GDP-4-dehydro-D-rhamnose reductase activity|GDP-L-fucose synthase activity|isomerase activity			pancreas(1)	1	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.17e-38)|Epithelial(56;7.17e-37)|all cancers(56;2.46e-32)|Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.239)		NADH(DB00157)	GAAGATACAGGTGGACAGGCA	0.647													7	26					0	0	8.12818e-05	0	0
HSF1	3297	broad.mit.edu	37	8	145537654	145537654	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr8:145537654G>A	uc003zbt.3	+	12	1491	c.1321G>A	c.(1321-1323)GAG>AAG	p.E441K	HSF1_uc003zbu.3_RNA	NM_005526	NP_005517	Q00613	HSF1_HUMAN	heat shock transcription factor 1	441	Transactivation domain.					cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;1.12e-39)|all cancers(56;9.11e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0547)|Colorectal(110;0.055)			ACAGATCCAAGAGCTCCTGTC	0.672													13	17					0	0	0.000132079	0	0
IFNA21	3452	broad.mit.edu	37	9	21166166	21166166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:21166166C>T	uc003zom.2	-	1	494	c.446G>A	c.(445-447)AGA>AAA	p.R149K		NM_002175	NP_002166	P01568	IFN21_HUMAN	interferon, alpha 21 precursor	149					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(5;1.93e-187)|Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AAGAGTGATTCTTTGGAAGTA	0.448													45	185					0	0	0.000781405	0	0
IFNE	338376	broad.mit.edu	37	9	21481111	21481111	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:21481111C>T	uc003zpg.2	-	1	1202	c.583G>A	c.(583-585)GAC>AAC	p.D195N	LOC554202_uc003zpe.2_Intron|LOC554202_uc003zpf.2_Intron	NM_176891	NP_795372	Q86WN2	IFNE_HUMAN	interferon, epsilon precursor	195					defense response|response to virus	extracellular space	cytokine activity|cytokine receptor binding				0						TGCTTCATGTCGTTCAAGGGT	0.458													19	97					0	0	0.000375601	0	0
AQP7	364	broad.mit.edu	37	9	33385025	33385025	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:33385025G>A	uc003zst.2	-	8	1179	c.1007C>T	c.(1006-1008)TCC>TTC	p.S336F	SUGT1P1_uc010mjq.1_Intron|AQP7_uc003zsu.1_3'UTR	NM_001170	NP_001161	O14520	AQP7_HUMAN	aquaporin 7	336	Cytoplasmic (Potential).				excretion|generation of precursor metabolites and energy	cell-cell junction|cytoplasm|integral to plasma membrane	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.191)		TAGGGCCATGGATTCATGTAA	0.542													19	129					0	0	0.00047179	0	0
UBE2R2	54926	broad.mit.edu	37	9	33912014	33912014	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:33912014C>G	uc003ztm.2	+	4	989	c.415C>G	c.(415-417)CCA>GCA	p.P139A		NM_017811	NP_060281	Q712K3	UB2R2_HUMAN	ubiquitin-conjugating enzyme UBC3B	139					protein K48-linked ubiquitination|protein monoubiquitination		ATP binding|ubiquitin-protein ligase activity				0			LUSC - Lung squamous cell carcinoma(29;0.0176)	GBM - Glioblastoma multiforme(74;0.188)		CACCTTCTCCCCAGCCAATGT	0.358													4	77					0	0	3.59834e-05	0	0
GALT	2592	broad.mit.edu	37	9	34647856	34647856	+	Silent	SNP	G	A	A	rs141232328		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:34647856G>A	uc003zve.2	+	5	472	c.405G>A	c.(403-405)TCG>TCA	p.S135S	GALT_uc003zvf.2_Silent_p.S26S|GALT_uc003zvg.2_Silent_p.S7S|GALT_uc003zvh.2_Silent_p.S87S|GALT_uc011lop.1_Silent_p.S87S|IL11RA_uc003zvi.2_5'Flank	NM_000155	NP_000146	P07902	GALT_HUMAN	galactose-1-phosphate uridylyltransferase	135			S -> L (in GALCT; frequent mutation in African Americans; about 5% of normal activity).|S -> W (in GALCT).		galactose catabolic process	cytosol	UDP-glucose:hexose-1-phosphate uridylyltransferase activity|zinc ion binding				0	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.173)		ACCCCTGGTCGGATGTAACGC	0.597									Galactosemia				15	62					0	0	0.000219431	0	0
VCP	7415	broad.mit.edu	37	9	35066718	35066718	+	Silent	SNP	T	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:35066718T>C	uc003zvy.2	-	4	788	c.399A>G	c.(397-399)GTA>GTG	p.V133V	VCP_uc003zvz.2_RNA|VCP_uc010mkh.1_5'UTR|VCP_uc010mki.1_Silent_p.V88V	NM_007126	NP_009057	P55072	TERA_HUMAN	valosin-containing protein	133					activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding			upper_aerodigestive_tract(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			GCTTAAGGTATACCTCGAAGA	0.473													14	23					0	0	0.000151284	0	0
NPR2	4882	broad.mit.edu	37	9	35800763	35800763	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:35800763C>T	uc003zyd.2	+	6	1276	c.1276C>T	c.(1276-1278)CCC>TCC	p.P426S	NPR2_uc010mlb.2_Missense_Mutation_p.P426S	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	426	Extracellular (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	ACGGCCTATTCCCTGGGTGAA	0.607													8	17					0	0	0.000274275	0	0
SPIN1	10927	broad.mit.edu	37	9	91077651	91077651	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:91077651C>T	uc010mqj.2	+	4	842	c.342C>T	c.(340-342)CTC>CTT	p.L114L	SPIN1_uc004apy.2_Silent_p.L114L|SPIN1_uc004apz.2_Silent_p.L114L|SPIN1_uc010mqk.2_Silent_p.L114L	NM_006717	NP_006708	Q9Y657	SPIN1_HUMAN	spindlin	114					cell cycle|gamete generation|multicellular organismal development	nucleus	methylated histone residue binding				0						TTGAAGTCCTCCCTGATAGAG	0.284													13	80					0	0	0.000422831	0	0
SHC3	53358	broad.mit.edu	37	9	91653172	91653172	+	Silent	SNP	G	A	A	rs71904677		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:91653172G>A	uc004aqg.2	-	11	1699	c.1392C>T	c.(1390-1392)CCC>CCT	p.P464P		NM_016848	NP_058544	Q92529	SHC3_HUMAN	src homology 2 domain-containing transforming	464	CH1.				central nervous system development|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	protein binding|signal transducer activity			lung(3)|skin(1)	4						CGGGCCCCAAGGGCTGGTTCT	0.478													7	49					0	0	8.12818e-05	0	0
ROR2	4920	broad.mit.edu	37	9	94487018	94487018	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:94487018G>A	uc004arj.1	-	9	1957	c.1758C>T	c.(1756-1758)GCC>GCT	p.A586A	ROR2_uc004ari.1_Silent_p.A446A	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	586	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						GGGGCTCCAGGGCGGACTTCA	0.647													4	16					0	0	0.000602214	0	0
ZNF782	158431	broad.mit.edu	37	9	99589443	99589443	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:99589443C>T	uc004awp.1	-	5	444	c.163G>A	c.(163-165)GAA>AAA	p.E55K	ZNF782_uc011lup.1_5'UTR	NM_001001662	NP_001001662	Q6ZMW2	ZN782_HUMAN	zinc finger protein 782	55	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				AAGATCAGTTCTGGTTTTGTA	0.383													9	32					0	0	0.000442599	0	0
CYLC2	1539	broad.mit.edu	37	9	105767683	105767683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:105767683C>T	uc004bbs.2	+	5	840	c.770C>T	c.(769-771)TCG>TTG	p.S257L		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	257	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				GGTGATGAATCGAAGGATGCC	0.358													14	57					0	0	0.000151284	0	0
IKBKAP	8518	broad.mit.edu	37	9	111643998	111643998	+	Silent	SNP	A	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:111643998A>G	uc004bdm.3	-	31	3853	c.3333T>C	c.(3331-3333)CCT>CCC	p.P1111P	IKBKAP_uc004bdl.2_Silent_p.P762P|IKBKAP_uc011lwc.1_Silent_p.P997P|IKBKAP_uc010mtq.2_Silent_p.P762P|IKBKAP_uc004bdk.2_Silent_p.P115P|IKBKAP_uc010mtp.2_RNA	NM_003640	NP_003631	O95163	ELP1_HUMAN	inhibitor of kappa light polypeptide gene	1111					immune response|protein complex assembly|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding|signal transducer activity			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	7						CTAAAATGGAAGGCTTTACGT	0.363													10	35					0	0	0.000673444	0	0
EPB41L4B	54566	broad.mit.edu	37	9	111966002	111966002	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:111966002C>G	uc004bdz.1	-	19	2182	c.1887G>C	c.(1885-1887)AAG>AAC	p.K629N		NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	629						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						GTGATTCCTCCTTTCCACCCT	0.363													12	56					0	0	0.000308642	0	0
PTPN3	5774	broad.mit.edu	37	9	112172549	112172549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:112172549C>T	uc004bed.2	-	15	1572	c.1460G>A	c.(1459-1461)GGG>GAG	p.G487E	PTPN3_uc004beb.2_Missense_Mutation_p.G356E|PTPN3_uc004bec.2_Missense_Mutation_p.G311E|PTPN3_uc010mtu.2_RNA|PTPN3_uc011lwg.1_Missense_Mutation_p.G442E|PTPN3_uc011lwh.1_Missense_Mutation_p.G333E|PTPN3_uc011lwd.1_5'UTR|PTPN3_uc011lwe.1_Missense_Mutation_p.G200E|PTPN3_uc011lwf.1_Missense_Mutation_p.G155E	NM_002829	NP_002820	P26045	PTN3_HUMAN	protein tyrosine phosphatase, non-receptor type	487					negative regulation of membrane protein ectodomain proteolysis|negative regulation of mitotic cell cycle	cytoplasm|cytoskeleton|internal side of plasma membrane	ATPase binding|cytoskeletal protein binding|phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(3)	3						GGTGGAGCCCCCTTTGGTCAC	0.597													15	66					0	0	0.000132079	0	0
MUSK	4593	broad.mit.edu	37	9	113509958	113509958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:113509958G>A	uc004bey.2	+	7	889	c.791G>A	c.(790-792)CGA>CAA	p.R264Q	MUSK_uc004bex.2_Missense_Mutation_p.R274Q	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	264	Ig-like 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						GTGAAAGACCGAGTGATTGAC	0.438													35	118					0	0	0.000680045	0	0
PAPPA	5069	broad.mit.edu	37	9	118949587	118949587	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:118949587C>T	uc004bjn.2	+	2	951	c.570C>T	c.(568-570)AGC>AGT	p.S190S	PAPPA_uc011lxp.1_5'UTR|PAPPA_uc011lxq.1_5'UTR	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	190					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CCCACCGCAGCTACCTCCCAG	0.547													7	51					0	0	8.12818e-05	0	0
OR1L1	26737	broad.mit.edu	37	9	125424008	125424008	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:125424008A>C	uc011lza.1	+	1	164	c.164A>C	c.(163-165)AAC>ACC	p.N55T		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	55	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						GGAAGAAATAACCTAACAAGA	0.418													6	49					0	0	0.000157383	0	0
OR1L6	392390	broad.mit.edu	37	9	125512249	125512249	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:125512249G>A	uc011lzc.1	+	1	231	c.231G>A	c.(229-231)GTG>GTA	p.V77V		NM_001004453	NP_001004453	Q8NGR2	OR1L6_HUMAN	olfactory receptor, family 1, subfamily L,	77	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCGCTGCGGTGGGGAATGTGC	0.532													10	58					0	0	0.000673444	0	0
TTC16	158248	broad.mit.edu	37	9	130489680	130489680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:130489680G>A	uc004brq.1	+	12	1767	c.1700G>A	c.(1699-1701)GGA>GAA	p.G567E	PTRH1_uc011mah.1_5'Flank|TTC16_uc011mai.1_Missense_Mutation_p.G554E|TTC16_uc004brr.1_Missense_Mutation_p.G417E|TTC16_uc010mxn.1_Missense_Mutation_p.G163E	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	567							binding				0						GTAAAACCGGGAAGCTCAGAG	0.507													4	6					0	0	0.00024832	0	0
SPTAN1	6709	broad.mit.edu	37	9	131344997	131344997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:131344997C>T	uc004bvl.3	+	14	1788	c.1675C>T	c.(1675-1677)CAC>TAC	p.H559Y	SPTAN1_uc011mbg.1_Missense_Mutation_p.H559Y|SPTAN1_uc011mbh.1_Missense_Mutation_p.H571Y|SPTAN1_uc004bvm.3_Missense_Mutation_p.H559Y|SPTAN1_uc004bvn.3_Missense_Mutation_p.H559Y	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	559	Spectrin 6.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						CAATGCCCTTCACGAGAGAGC	0.517													16	48					0	0	0.000308642	0	0
TOR1A	1861	broad.mit.edu	37	9	132584974	132584974	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:132584974G>A	uc004byl.2	-	2	407	c.330C>T	c.(328-330)TTC>TTT	p.F110F	TOR1A_uc004bym.2_RNA|TOR1A_uc004byn.2_Silent_p.F110F	NM_000113	NP_000104	O14656	TOR1A_HUMAN	torsin A precursor	110					chaperone mediated protein folding requiring cofactor|response to unfolded protein	endoplasmic reticulum lumen|nuclear membrane	ATP binding|serine-type endopeptidase activity|unfolded protein binding			central_nervous_system(1)	1		Ovarian(14;0.00556)				TCTTGCTGACGAAATTTTTGC	0.468													32	125					0	0	0.000319135	0	0
NUP214	8021	broad.mit.edu	37	9	134006221	134006221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:134006221C>T	uc004cag.2	+	5	772	c.661C>T	c.(661-663)CCT>TCT	p.P221S	NUP214_uc004cah.2_Missense_Mutation_p.P221S|NUP214_uc004caf.1_Missense_Mutation_p.P221S	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	221					carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		CCAGTATCTTCCTGTAAGTTC	0.398			T	DEK|SET|ABL1	AML|T-ALL								13	37					0	0	0.000151284	0	0
C9orf171	389799	broad.mit.edu	37	9	135374979	135374979	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:135374979C>T	uc004cbn.2	+	4	672	c.624C>T	c.(622-624)ATC>ATT	p.I208I	C9orf171_uc004cbo.2_Silent_p.I172I	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	208										ovary(4)|large_intestine(1)	5						CATTTGGGATCCGGGCACGGT	0.592													8	21					0	0	0.000157383	0	0
FCN2	2220	broad.mit.edu	37	9	137779172	137779172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:137779172G>A	uc004cfg.1	+	8	863	c.853G>A	c.(853-855)GGC>AGC	p.G285S	FCN2_uc004cfh.1_Missense_Mutation_p.G247S	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	285	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		GGGGACTCATGGCAGCTTTGC	0.507													10	31					0	0	0.000442599	0	0
CACNA1B	774	broad.mit.edu	37	9	140941904	140941904	+	Silent	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr9:140941904G>A	uc004cog.2	+	23	3742	c.3597G>A	c.(3595-3597)GTG>GTA	p.V1199V	CACNA1B_uc011mfd.1_Silent_p.V729V|CACNA1B_uc004coi.2_Silent_p.V409V	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1199	Helical; Name=S2 of repeat III; (Potential).|III.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TTGAGATGGTGATAAAGGTGA	0.458													11	28					0	0	0.00010058	0	0
MAOB	4129	broad.mit.edu	37	X	43656391	43656391	+	Missense_Mutation	SNP	G	A	A	rs12850496		TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chrX:43656391G>A	uc004dfz.3	-	6	775	c.599C>T	c.(598-600)TCG>TTG	p.S200L	MAOB_uc011mkx.1_Missense_Mutation_p.S184L|MAOB_uc011mky.1_Missense_Mutation_p.S184L	NM_000898	NP_000889	P27338	AOFB_HUMAN	monoamine oxidase B	200	Cytoplasmic.				xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	electron carrier activity|primary amine oxidase activity			ovary(1)|central_nervous_system(1)	2					Amantadine(DB00915)|Bupropion(DB01156)|Carbidopa(DB00190)|Citalopram(DB00215)|Dopamine(DB00988)|Entacapone(DB00494)|Furazolidone(DB00614)|Ginkgo biloba(DB01381)|Ibuprofen(DB01050)|Imipramine(DB00458)|Iproniazid(DB04818)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Maprotiline(DB00934)|Meclizine(DB00737)|Moclobemide(DB01171)|Nicotine(DB00184)|Pargyline(DB01626)|Phenelzine(DB00780)|Phentermine(DB00191)|Rasagiline(DB01367)|Selegiline(DB01037)|Tranylcypromine(DB00752)	ATTTGTTGTCGAGATGATTCT	0.463													14	23					0	0	0.000566183	0	0
WDR13	64743	broad.mit.edu	37	X	48457988	48457988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chrX:48457988G>A	uc004dkh.1	+	5	553	c.406G>A	c.(406-408)GTG>ATG	p.V136M	WDR13_uc010nif.1_Missense_Mutation_p.V14M|WDR13_uc004dki.1_Missense_Mutation_p.V44M|WDR13_uc004dkj.1_Missense_Mutation_p.V136M|WDR13_uc004dkk.1_Missense_Mutation_p.V44M|WDR13_uc004dkl.3_Missense_Mutation_p.V44M|WDR13_uc011mme.1_Missense_Mutation_p.V14M	NM_017883	NP_060353	Q9H1Z4	WDR13_HUMAN	WD repeat domain 13 protein	136						cytoplasm|nucleus				ovary(2)	2						CCCTGGCAGCGTGGTGCCCAC	0.617													12	12					0	0	0.000422831	0	0
CCNB3	85417	broad.mit.edu	37	X	50053237	50053237	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chrX:50053237T>C	uc004dox.3	+	6	2366	c.2068T>C	c.(2068-2070)TTC>CTC	p.F690L	CCNB3_uc004doy.2_Missense_Mutation_p.F690L|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	690					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					TGGGTCCCTCTTCCAGGAGGC	0.463													4	7					0	0	0.00024832	0	0
PFKFB1	5207	broad.mit.edu	37	X	54975519	54975519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chrX:54975519C>T	uc004dty.1	-	9	1053	c.982G>A	c.(982-984)GAG>AAG	p.E328K	PFKFB1_uc010nkd.1_Intron|PFKFB1_uc011mol.1_Missense_Mutation_p.E263K	NM_002625	NP_002616	P16118	F261_HUMAN	6-phosphofructo-2-kinase/fructose-2,	328	Fructose-2,6-bisphosphatase.	Potential.			energy reserve metabolic process|fructose 2,6-bisphosphate metabolic process|gluconeogenesis|glycolysis|intracellular protein kinase cascade	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(1)	1						GCATCAATCTCATTCAGGGCC	0.582													10	13					0	0	0.000673444	0	0
TEX11	56159	broad.mit.edu	37	X	70099868	70099868	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chrX:70099868C>T	uc004dyl.2	-	4	336	c.174G>A	c.(172-174)AGG>AGA	p.R58R	TEX11_uc004dym.2_Silent_p.R43R	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	58							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					CCATAGACTCCCTGTTGATAT	0.318													15	22					0	0	0.000219431	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962509	73962509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chrX:73962509C>T	uc004eby.2	-	3	2500	c.1883G>A	c.(1882-1884)CGA>CAA	p.R628Q		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	628					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TTTAGATTTTCGTTTGCGAGC	0.418													6	8					0	0	0.000157383	0	0
CENPI	2491	broad.mit.edu	37	X	100417919	100417919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chrX:100417919C>T	uc004egx.2	+	21	2504	c.2234C>T	c.(2233-2235)CCC>CTC	p.P745L	CENPI_uc011mrg.1_Missense_Mutation_p.P731L	NM_006733	NP_006724	Q92674	CENPI_HUMAN	centromere protein I	745					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	cytosol|kinetochore|nucleoplasm	protein binding			skin(1)	1						TCTTCCATTCCCAGAGCAGAG	0.378													26	33					0	0	0.000184323	0	0
NXF3	56000	broad.mit.edu	37	X	102333532	102333532	+	Silent	SNP	G	A	A	rs148623328	byFrequency	TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chrX:102333532G>A	uc004eju.2	-	17	1478	c.1407C>T	c.(1405-1407)CTC>CTT	p.L469L	NXF3_uc010noi.1_Missense_Mutation_p.R316C	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	469	NTF2.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						GGGTGAAGGCGAGAACAGAAC	0.542													23	39					0	0	0.000227799	0	0
COL4A5	1287	broad.mit.edu	37	X	107840644	107840644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chrX:107840644G>A	uc004enz.1	+	24	1827	c.1625G>A	c.(1624-1626)GGA>GAA	p.G542E	COL4A5_uc011mso.1_Missense_Mutation_p.G542E|COL4A5_uc004eob.1_Missense_Mutation_p.G150E	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	542	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GGCTTTCCTGGATCTAAAGGT	0.393									Alport_syndrome_with_Diffuse_Leiomyomatosis				19	34					0	0	0.000295444	0	0
TFDP3	51270	broad.mit.edu	37	X	132351834	132351834	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chrX:132351834C>T	uc004exb.1	-	1	543	c.454G>A	c.(454-456)GAG>AAG	p.E152K		NM_016521	NP_057605	Q5H9I0	TFDP3_HUMAN	transcription factor Dp family, member 3	152	Potential.					transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TAAGCTGACTCGTTTGGTGAG	0.527													11	24					0	0	0.000219431	0	0
AFF2	2334	broad.mit.edu	37	X	148037975	148037975	+	Silent	SNP	C	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chrX:148037975C>T	uc004fcp.2	+	11	2879	c.2400C>T	c.(2398-2400)AAC>AAT	p.N800N	AFF2_uc004fcq.2_Silent_p.N790N|AFF2_uc004fcr.2_Silent_p.N761N|AFF2_uc011mxb.1_Silent_p.N765N|AFF2_uc004fcs.2_Silent_p.N767N|AFF2_uc011mxc.1_Silent_p.N441N	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	800					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					ACCTGAAAAACCTCTGGGTGA	0.478													23	30					0	0	0.000586117	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092619	151092619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chrX:151092619G>A	uc004fez.2	+	3	639	c.483G>A	c.(481-483)ATG>ATA	p.M161I	MAGEA4_uc004ffa.2_Missense_Mutation_p.M161I|MAGEA4_uc004ffb.2_Missense_Mutation_p.M161I|MAGEA4_uc004ffc.2_Missense_Mutation_p.M161I|MAGEA4_uc004ffd.2_Missense_Mutation_p.M161I	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	161	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCCTGAAGATGATCTTTGGCA	0.517													26	37					0	0	0.000147802	0	0
MYO1B	4430	broad.mit.edu	37	2	192279255	192279256	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr2:192279255_192279256insT	uc010fsg.2	+	29	3274_3275	c.3019_3020insT	c.(3019-3021)ATTfs	p.I1007fs	MYO1B_uc002usq.2_Frame_Shift_Ins_p.I949fs|MYO1B_uc002usr.2_Frame_Shift_Ins_p.I1007fs|MYO1B_uc002usu.2_Frame_Shift_Ins_p.I252fs|MYO1B_uc002usv.2_Frame_Shift_Ins_p.I123fs	NM_001130158	NP_001123630	O43795	MYO1B_HUMAN	myosin IB isoform 1	1007						myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(5)|large_intestine(2)|ovary(1)	8			OV - Ovarian serous cystadenocarcinoma(117;0.0112)|Epithelial(96;0.104)|all cancers(119;0.236)			TACATCTCGGATTTTCCTCTTA	0.342													7	46	---	---	---	---					
ANKRD43	134548	broad.mit.edu	37	5	132150701	132150701	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr5:132150701delG	uc003kxw.2	+	1	1669	c.1388delG	c.(1387-1389)CGCfs	p.R463fs		NM_175873	NP_787069	Q2M3V2	ANR43_HUMAN	ankyrin repeat domain 43 precursor	463											0		all_cancers(142;0.086)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GCTGCCAGGCGCCCCGTACAG	0.667													2	4	---	---	---	---					
ING3	54556	broad.mit.edu	37	7	120613283	120613284	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chr7:120613283_120613284insG	uc003vjn.2	+	11	1260_1261	c.1126_1127insG	c.(1126-1128)TGTfs	p.C376fs	ING3_uc003vjo.2_Frame_Shift_Ins_p.C150fs|ING3_uc003vjp.2_3'UTR|ING3_uc011kns.1_Frame_Shift_Ins_p.C361fs	NM_019071	NP_061944	Q9NXR8	ING3_HUMAN	inhibitor of growth family, member 3 isoform 1	376	PHD-type.				histone H2A acetylation|histone H4 acetylation|positive regulation of apoptosis|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|Piccolo NuA4 histone acetyltransferase complex	zinc ion binding			ovary(1)	1	all_neural(327;0.117)					GATGGTGGGATGTGATAACCAA	0.282													28	126	---	---	---	---					
ZFX	7543	broad.mit.edu	37	X	24229150	24229151	+	Frame_Shift_Ins	INS	-	TAGA	TAGA			TCGA-EE-A2GT-06A-12D-A197-08	TCGA-EE-A2GT-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5310f698-d31a-4628-84b4-dc9ac29722a5	69d0bff4-eec5-40a7-ab3d-cba125bc29f7	g.chrX:24229150_24229151insTAGA	uc004dbf.2	+	9	2333_2334	c.2075_2076insTAGA	c.(2074-2076)TGTfs	p.C692fs	ZFX_uc004dbe.2_3'UTR|ZFX_uc011mjv.1_Frame_Shift_Ins_p.C731fs|ZFX_uc010nfz.2_Frame_Shift_Ins_p.C348fs	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	692	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						ATGCACCAGTGTAGACATTGTG	0.431													29	46	---	---	---	---					
