Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PANK4	55229	broad.mit.edu	37	1	2444365	2444365	+	Silent	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr1:2444365C>G	uc001ajm.1	-	13	1698	c.1689G>C	c.(1687-1689)GCG>GCC	p.A563A	PANK4_uc010nza.1_Silent_p.A524A	NM_018216	NP_060686	Q9NVE7	PANK4_HUMAN	pantothenate kinase 4	563					coenzyme A biosynthetic process	cytoplasm	ATP binding|pantothenate kinase activity			upper_aerodigestive_tract(1)|large_intestine(1)|ovary(1)	3	all_cancers(77;0.000158)|all_epithelial(69;8.01e-05)|all_lung(157;0.0212)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.18e-20)|all_lung(118;1.67e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;1.54e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.95e-23)|GBM - Glioblastoma multiforme(42;2.81e-08)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.00445)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		AGACATTCCCCGCCAGGAGGC	0.692000													3	57					0	0	0.00024832	0	0
CSMD2	114784	broad.mit.edu	37	1	34038107	34038107	+	Silent	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr1:34038107G>A	uc001bxn.1	-	51	7796	c.7767C>T	c.(7765-7767)GTC>GTT	p.V2589V	CSMD2_uc001bxm.1_Silent_p.V2587V	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2589	Extracellular (Potential).|Sushi 15.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGGACTCACGGACACACTGTG	0.582000													5	89					0	0	3.59834e-05	0	0
CACHD1	57685	broad.mit.edu	37	1	65120413	65120413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr1:65120413C>T	uc001dbo.1	+	12	1661	c.1556C>T	c.(1555-1557)TCC>TTC	p.S519F	CACHD1_uc001dbp.1_Missense_Mutation_p.S274F|CACHD1_uc001dbq.1_Missense_Mutation_p.S274F	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	570	Extracellular (Potential).				calcium ion transport	integral to membrane				ovary(2)	2						GTGAACTCATCCCTGTCTTGG	0.433000													8	118					0	0	0.000274275	0	0
ABCA4	24	broad.mit.edu	37	1	94568628	94568628	+	Silent	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr1:94568628G>A	uc001dqh.2	-	5	617	c.513C>T	c.(511-513)ATC>ATT	p.I171I	ABCA4_uc010otn.1_Silent_p.I171I	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	171	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CAGACAGGCCGATGTTTTTAA	0.463000													11	161					0	0	0.00010058	0	0
PPM1J	333926	broad.mit.edu	37	1	113253414	113253414	+	Silent	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr1:113253414G>A	uc001ect.1	-	8	1197	c.1170C>T	c.(1168-1170)GTC>GTT	p.V390V	PPM1J_uc009wgl.1_RNA|PPM1J_uc001ecs.1_Silent_p.V184V	NM_005167	NP_005158	Q5JR12	PPM1J_HUMAN	protein phosphatase 1J (PP2C domain containing)	390	PP2C-like.									breast(2)|central_nervous_system(1)	3	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGGAACTGCAGACCTTAAGGC	0.577000													4	64					0	0	3.59834e-05	0	0
TUFT1	7286	broad.mit.edu	37	1	151553422	151553422	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr1:151553422T>C	uc001eyl.2	+	12	1075	c.1013T>C	c.(1012-1014)TTA>TCA	p.L338S	TUFT1_uc001eym.2_Missense_Mutation_p.L313S|TUFT1_uc010pdf.1_Missense_Mutation_p.L357S|TUFT1_uc010pdg.1_Missense_Mutation_p.L286S	NM_020127	NP_064512	Q9NNX1	TUFT1_HUMAN	tuftelin 1 isoform 1	338	Potential.				bone mineralization|odontogenesis	cytoplasm|extracellular region	structural constituent of tooth enamel				0	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			TTACAGAATTTAGAGATGCAT	0.512000													5	47					0	0	0.000602214	0	0
FLG2	388698	broad.mit.edu	37	1	152326043	152326043	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr1:152326043C>T	uc001ezw.3	-	3	4292	c.4219G>A	c.(4219-4221)GGA>AGA	p.G1407R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1407							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGGACTGTCCATGACCAGAG	0.527000													10	157					0	0	6.40141e-05	0	0
LMNA	4000	broad.mit.edu	37	1	156084965	156084966	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr1:156084965_156084966GG>TT	uc001fni.2	+	1	505_506	c.256_257GG>TT	c.(256-258)GGG>TTG	p.G86L	LMNA_uc001fnf.1_Missense_Mutation_p.G86L|LMNA_uc001fng.2_Missense_Mutation_p.G86L|LMNA_uc001fnh.2_Missense_Mutation_p.G86L|LMNA_uc009wro.1_Missense_Mutation_p.G86L	NM_170707	NP_733821	P02545	LMNA_HUMAN	lamin A/C isoform 1 precursor	86	Interaction with MLIP.|Coil 1B.|Rod.				cellular component disassembly involved in apoptosis|cellular response to hypoxia|establishment or maintenance of microtubule cytoskeleton polarity|muscle organ development|positive regulation of cell aging|regulation of apoptosis|regulation of cell migration	cytoplasm|lamin filament|nuclear envelope|nuclear envelope|perinuclear region of cytoplasm	protein binding|structural molecule activity|structural molecule activity			ovary(2)	2	Hepatocellular(266;0.158)					GGCCGAGCTCGGGGATGCCCGC	0.644000									Werner_syndrome|Hutchinson-Gilford_Progeria_Syndrome				7	182					0	0	6.4e-05	0	0
CRP	1401	broad.mit.edu	37	1	159683410	159683410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr1:159683410G>A	uc001ftw.2	-	2	684	c.580C>T	c.(580-582)CTT>TTT	p.L194F	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_RNA	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	194	Pentaxin.				acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	GGCCCGCCAAGATAGATGGTG	0.537000													8	97					0	0	0.000673444	0	0
ATP1A4	480	broad.mit.edu	37	1	160156118	160156118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr1:160156118G>A	uc001fve.3	+	21	3501	c.3022G>A	c.(3022-3024)GAT>AAT	p.D1008N	ATP1A4_uc001fvf.3_RNA|ATP1A4_uc001fvg.2_Missense_Mutation_p.D511N|ATP1A4_uc001fvh.2_Missense_Mutation_p.D144N	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	1008	Helical; (Potential).			ITWWLCAIPYSILIFVYDEIRKLLIRQ -> WSFALTAQAG VKWRILGLLQPLPPRFK (in Ref. 6; BAC05228).	ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CTTCGTCTATGATGAAATCAG	0.562000													12	161					0	0	0.00010058	0	0
TNR	7143	broad.mit.edu	37	1	175336410	175336410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr1:175336410C>T	uc001gkp.1	-	8	2068	c.1987G>A	c.(1987-1989)GGA>AGA	p.G663R	TNR_uc009wwu.1_Missense_Mutation_p.G663R	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	663	Fibronectin type-III 4.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					ATTCCAACTCCATACTCAGTG	0.498000													7	65					0	0	0.000157383	0	0
TRAF5	7188	broad.mit.edu	37	1	211529807	211529807	+	Silent	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr1:211529807C>T	uc001hih.2	+	4	435	c.375C>T	c.(373-375)TAC>TAT	p.Y125Y	TRAF5_uc001hii.2_Silent_p.Y125Y|TRAF5_uc010psx.1_Silent_p.Y125Y|TRAF5_uc010psy.1_Silent_p.Y125Y|TRAF5_uc001hij.2_Silent_p.Y125Y	NM_004619	NP_004610	O00463	TRAF5_HUMAN	TNF receptor-associated factor 5	125					apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis	CD40 receptor complex|centrosome|internal side of plasma membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)|breast(2)|ovary(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00946)|all cancers(67;0.0808)|Epithelial(68;0.144)		TGGGCCGGTACCAGGTTGGTA	0.403000													6	73					0	0	3.59834e-05	0	0
SLC35F3	148641	broad.mit.edu	37	1	234444858	234444858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr1:234444858G>A	uc001hwa.1	+	3	641	c.413G>A	c.(412-414)CGA>CAA	p.R138Q	SLC35F3_uc001hvy.1_Missense_Mutation_p.R207Q	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	138					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			GAATGCTGTCGATTTTTTGGA	0.383000													7	62					0	0	8.12818e-05	0	0
FBXO18	84893	broad.mit.edu	37	10	5948194	5948194	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr10:5948194C>G	uc001iis.2	+	3	447	c.352C>G	c.(352-354)CCG>GCG	p.P118A	FBXO18_uc001iir.2_Missense_Mutation_p.P44A|FBXO18_uc009xig.2_Missense_Mutation_p.P44A|FBXO18_uc001iit.2_Missense_Mutation_p.P169A	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	118					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						AGGGTCTGCCCCGCCCTCCAG	0.612000													3	48					0	0	6.4e-05	0	0
ITIH5	80760	broad.mit.edu	37	10	7682790	7682790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr10:7682790C>T	uc001ijq.2	-	4	407	c.328G>A	c.(328-330)GAA>AAA	p.E110K	ITIH5_uc001ijr.1_Missense_Mutation_p.E110K	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	110	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						TCTGTAATTTCGCCCTGATAC	0.373000													8	109					0	0	0.000442599	0	0
KIAA1217	56243	broad.mit.edu	37	10	24813315	24813315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr10:24813315G>A	uc001iru.3	+	13	2923	c.2520G>A	c.(2518-2520)ATG>ATA	p.M840I	KIAA1217_uc001irs.2_Missense_Mutation_p.M760I|KIAA1217_uc001irt.3_Missense_Mutation_p.M805I|KIAA1217_uc010qcy.1_Missense_Mutation_p.M805I|KIAA1217_uc010qcz.1_Missense_Mutation_p.M805I|KIAA1217_uc001irv.1_Missense_Mutation_p.M655I|KIAA1217_uc010qda.1_Intron|KIAA1217_uc001irw.2_Missense_Mutation_p.M523I|KIAA1217_uc001irz.2_Missense_Mutation_p.M523I|KIAA1217_uc001irx.2_Missense_Mutation_p.M523I|KIAA1217_uc001iry.2_Missense_Mutation_p.M523I	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	840					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						ACATGGCTATGGAAAAGGCCA	0.597000													5	71					0	0	3.59834e-05	0	0
IDE	3416	broad.mit.edu	37	10	94234693	94234694	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr10:94234693_94234694CG>AT	uc001kia.2	-	17	2096_2097	c.2020_2021CG>AT	c.(2020-2022)CGG>ATG	p.R674M	IDE_uc010qnp.1_Missense_Mutation_p.R119M|IDE_uc001khz.2_Missense_Mutation_p.R119M	NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	674					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTGTTCAGCCCGGAAATTGTTA	0.386000													9	474					0	0	6.4e-05	0	0
MYOF	26509	broad.mit.edu	37	10	95097623	95097623	+	Silent	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr10:95097623C>T	uc001kin.2	-	40	4509	c.4386G>A	c.(4384-4386)GGG>GGA	p.G1462G	MYOF_uc001kio.2_Silent_p.G1449G|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	1462	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						TTTCATGTTCCCCTGAGGAAG	0.413000													6	96					0	0	3.59834e-05	0	0
NFKB2	4791	broad.mit.edu	37	10	104157296	104157296	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr10:104157296G>C	uc001kvb.2	+	8	780	c.515G>C	c.(514-516)CGG>CCG	p.R172P	NFKB2_uc001kva.2_Missense_Mutation_p.R172P|NFKB2_uc010qqk.1_Missense_Mutation_p.R172P|NFKB2_uc001kvd.2_Missense_Mutation_p.R172P|NFKB2_uc009xxc.2_Missense_Mutation_p.R172P	NM_001077494	NP_001070962	Q00653	NFKB2_HUMAN	nuclear factor of kappa light polypeptide gene	172	RHD.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	Bcl3/NF-kappaB2 complex|cytosol|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			lung(3)	3		Colorectal(252;0.00957)		Epithelial(162;3.4e-08)|all cancers(201;6.41e-07)		GCCGAGCAGCGGGAGCTGGAG	0.597000			T	IGH@	B-NHL								3	77					0	0	6.4e-05	0	0
MUC6	4588	broad.mit.edu	37	11	1016880	1016881	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr11:1016880_1016881CC>AA	uc001lsw.2	-	31	5971_5972	c.5920_5921GG>TT	c.(5920-5922)GGG>TTG	p.G1974L		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1974	Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGGACTGCTCCCTGTAGGTGGG	0.584000													13	583					0	0	6.4e-05	0	0
NAP1L4	4676	broad.mit.edu	37	11	2979666	2979667	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr11:2979666_2979667GG>TT	uc001lxc.2	-	10	995_996	c.854_855CC>AA	c.(853-855)CCC>CAA	p.P285Q	NAP1L4_uc009ydt.2_RNA|NAP1L4_uc010qxm.1_Missense_Mutation_p.P285Q|NAP1L4_uc010qxn.1_Missense_Mutation_p.P285Q	NM_005969	NP_005960	Q99733	NP1L4_HUMAN	nucleosome assembly protein 1-like 4	285					nucleosome assembly	chromatin assembly complex|cytoplasm	unfolded protein binding			ovary(1)	1		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00301)|LUSC - Lung squamous cell carcinoma(625;0.211)		AGGACTCATTGGGTACTTGTTT	0.342000													12	572					0	0	6.4e-05	0	0
ST5	6764	broad.mit.edu	37	11	8735572	8735572	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr11:8735572C>G	uc001mgt.2	-	8	2146	c.1960G>C	c.(1960-1962)GAG>CAG	p.E654Q	ST5_uc009yfr.2_Missense_Mutation_p.E234Q|ST5_uc001mgu.2_Missense_Mutation_p.E234Q|ST5_uc001mgv.2_Missense_Mutation_p.E654Q|ST5_uc010rbq.1_RNA|ST5_uc010rbp.1_Missense_Mutation_p.E167Q|ST5_uc009yfs.2_5'Flank	NM_213618	NP_998783	P78524	ST5_HUMAN	suppression of tumorigenicity 5 isoform 1	654					positive regulation of ERK1 and ERK2 cascade		protein binding			upper_aerodigestive_tract(1)	1				Epithelial(150;2.63e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0352)		GAGTCGCTCTCGCTCTCACTG	0.537000													3	99					0	0	0.000602214	0	0
TSGA10IP	254187	broad.mit.edu	37	11	65713199	65713199	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr11:65713199C>G	uc001ogk.1	+	1	85	c.53C>G	c.(52-54)CCG>CGG	p.P18R	TSGA10IP_uc009yqw.1_RNA|TSGA10IP_uc009yqx.1_RNA	NM_152762	NP_689975	Q3SY00	T10IP_HUMAN	testis specific, 10 interacting protein	18											0						GTTAGGACCCCGTCGGTGTGA	0.607000													3	31					0	0	0.00024832	0	0
MAP6	4135	broad.mit.edu	37	11	75298569	75298569	+	Silent	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr11:75298569C>T	uc001owu.2	-	4	2042	c.1977G>A	c.(1975-1977)AAG>AAA	p.K659K		NM_033063	NP_149052	Q96JE9	MAP6_HUMAN	microtubule-associated protein 6 isoform 1	659	Pro-rich.					Golgi apparatus|microtubule|perinuclear region of cytoplasm	calmodulin binding				0	Ovarian(111;0.11)					AACCTTGATTCTTTATGGGTG	0.498000													9	105					0	0	0.000442599	0	0
TP53AIP1	63970	broad.mit.edu	37	11	128807574	128807574	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr11:128807574C>G	uc001qey.2	-	2	350	c.140G>C	c.(139-141)TGG>TCG	p.W47S	TP53AIP1_uc001qex.2_Missense_Mutation_p.W47S|TP53AIP1_uc009zcm.1_RNA			Q9HCN2	TPIP1_HUMAN	RecName: Full=p53-regulated apoptosis-inducing protein 1;          Short=p53AIP1;	47					apoptosis	mitochondrion				lung(1)	1						GGGACTTACCCAGCCAGGTGT	0.622000													3	42					0	0	0.00024832	0	0
C12orf40	283461	broad.mit.edu	37	12	40076667	40076667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr12:40076667G>A	uc001rmc.2	+	8	1108	c.941G>A	c.(940-942)AGG>AAG	p.R314K	C12orf40_uc009zjv.1_RNA	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	314								p.R314R(1)		ovary(6)	6						GATGAGCAAAGGATAAAGAAA	0.333000													5	56					0	0	0.000602214	0	0
ENDOU	8909	broad.mit.edu	37	12	48110713	48110713	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr12:48110713G>C	uc001rpu.1	-	5	665	c.511C>G	c.(511-513)CCG>GCG	p.P171A	ENDOU_uc010sll.1_5'UTR|ENDOU_uc001rpt.1_Missense_Mutation_p.P130A|ENDOU_uc010slm.1_Missense_Mutation_p.P108A|uc001rpv.2_5'Flank	NM_006025	NP_006016	P21128	ENDOU_HUMAN	placental protein 11 precursor	171					female pregnancy|immune response|proteolysis	cytoplasm|extracellular space|plasma membrane	endoribonuclease activity|growth factor activity|manganese ion binding|polysaccharide binding|RNA binding|scavenger receptor activity|serine-type peptidase activity			ovary(2)|pancreas(1)	3						GTCTCTGACGGGGAGATGCAG	0.488000											OREG0021752	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	88					0	0	0.00024832	0	0
NAB2	4665	broad.mit.edu	37	12	57485290	57485290	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr12:57485290C>G	uc001smz.2	+	2	844	c.466C>G	c.(466-468)CGC>GGC	p.R156G		NM_005967	NP_005958	Q15742	NAB2_HUMAN	NGFI-A binding protein 2	156					cell proliferation|negative regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	transcription corepressor activity			upper_aerodigestive_tract(1)|ovary(1)	2						AGGCAGTGCCCGCAGTTTTAG	0.632000													4	55					0	0	0.00024832	0	0
ATP2B1	490	broad.mit.edu	37	12	90005120	90005120	+	Silent	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr12:90005120C>T	uc001tbh.2	-	12	2278	c.2097G>A	c.(2095-2097)AGG>AGA	p.R699R	ATP2B1_uc001tbg.2_Silent_p.R699R|ATP2B1_uc001tbf.2_Silent_p.R369R	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	699	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						TAATTCCAGCCCTCTGACACT	0.358000													9	221					0	0	0.00010058	0	0
POLR3B	55703	broad.mit.edu	37	12	106838326	106838326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr12:106838326C>T	uc001tlp.2	+	19	2263	c.2041C>T	c.(2041-2043)CCG>TCG	p.P681S	POLR3B_uc001tlq.2_Missense_Mutation_p.P623S	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	681					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						TAACCAGTCACCGAGAAACAC	0.438000													7	48					0	0	8.12818e-05	0	0
ATP12A	479	broad.mit.edu	37	13	25264842	25264842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr13:25264842C>T	uc001upp.2	+	7	969	c.782C>T	c.(781-783)TCC>TTC	p.S261F	ATP12A_uc010aaa.2_Missense_Mutation_p.S261F	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	261	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	TGCTTCTATTCCACAACGTGT	0.547000													9	180					0	0	0.000673444	0	0
LOC647288	647288	broad.mit.edu	37	13	75814354	75814354	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr13:75814354C>G	uc010ths.1	-	1	164	c.123G>C	c.(121-123)TGG>TGC	p.W41C		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						CCACCAGTTCCCATGGAAAAC	0.488000													4	46					0	0	3.59834e-05	0	0
TTC5	91875	broad.mit.edu	37	14	20763900	20763900	+	Silent	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr14:20763900G>A	uc001vwt.2	-	7	867	c.810C>T	c.(808-810)TTC>TTT	p.F270F	TTC5_uc001vwu.2_Silent_p.F127F	NM_138376	NP_612385	Q8N0Z6	TTC5_HUMAN	tetratricopeptide repeat domain 5	270					DNA repair	cytoplasm|nucleus	binding			ovary(1)	1	all_cancers(95;0.00092)		Epithelial(56;1.1e-06)|all cancers(55;8.07e-06)	GBM - Glioblastoma multiforme(265;0.0106)		ATCTATCCAGGAATTCCAGAA	0.483000													6	120					0	0	8.12818e-05	0	0
CHD8	57680	broad.mit.edu	37	14	21869107	21869107	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr14:21869107G>C	uc001was.1	-	22	3554	c.3460C>G	c.(3460-3462)CGC>GGC	p.R1154G	CHD8_uc001war.1_Missense_Mutation_p.R1050G|CHD8_uc001wav.1_Missense_Mutation_p.R596G	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	1433					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		TCATGTCTGCGGGAGCGTGGC	0.498000													3	72					0	0	0.00024832	0	0
MYH6	4624	broad.mit.edu	37	14	23855728	23855728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr14:23855728C>T	uc001wjv.2	-	33	4822	c.4755G>A	c.(4753-4755)ATG>ATA	p.M1585I		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1585	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TGGCCTGTTCCATCTCCTCGT	0.617000													9	119					0	0	0.000442599	0	0
KLHL28	54813	broad.mit.edu	37	14	45403424	45403424	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr14:45403424A>C	uc001wvq.2	-	3	1483	c.1237T>G	c.(1237-1239)TGG>GGG	p.W413G	KLHL28_uc001wvr.2_Missense_Mutation_p.W413G	NM_017658	NP_060128	Q9NXS3	KLH28_HUMAN	BTB (POZ) domain containing 5	413	Kelch 3.									ovary(1)	1						ACAGGTTGCCATTTTCTTATT	0.418000													5	65					0	0	0.000602214	0	0
ZBTB25	7597	broad.mit.edu	37	14	64954463	64954463	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr14:64954463C>G	uc001xhf.2	-	3	669	c.486G>C	c.(484-486)CAG>CAC	p.Q162H	ZBTB25_uc001xhc.2_Intron|ZBTB25_uc001xhg.2_Missense_Mutation_p.Q162H	NM_006977	NP_008908	P24278	ZBT25_HUMAN	zinc finger protein 46	162						cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2				all cancers(60;0.00865)|OV - Ovarian serous cystadenocarcinoma(108;0.0102)|BRCA - Breast invasive adenocarcinoma(234;0.0469)		GGTGGTCACCCTGGACAGCAG	0.537000													4	154					0	0	0.00024832	0	0
AHSA1	10598	broad.mit.edu	37	14	77931906	77931906	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr14:77931906C>G	uc001xtw.2	+	6	746	c.586C>G	c.(586-588)CAG>GAG	p.Q196E	AHSA1_uc010tvk.1_Missense_Mutation_p.Q196E	NM_012111	NP_036243	O95433	AHSA1_HUMAN	activator of heat shock 90kDa protein ATPase	196					protein folding|response to stress	cytosol|endoplasmic reticulum	ATPase activator activity|chaperone binding				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0281)		TTCAAAAACCCAGGCCAGACC	0.463000													3	83					0	0	6.4e-05	0	0
MARK3	4140	broad.mit.edu	37	14	103932348	103932348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr14:103932348C>T	uc001ymz.3	+	9	1483	c.817C>T	c.(817-819)CCC>TCC	p.P273S	MARK3_uc001ymx.3_Missense_Mutation_p.P273S|MARK3_uc001ymw.3_Missense_Mutation_p.P273S|MARK3_uc001yna.3_Missense_Mutation_p.P273S|MARK3_uc001ymy.3_Missense_Mutation_p.P194S|MARK3_uc010awp.2_Missense_Mutation_p.P296S|MARK3_uc010tyb.1_Missense_Mutation_p.P84S	NM_001128918	NP_001122390	P27448	MARK3_HUMAN	MAP/microtubule affinity-regulating kinase 3	273	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|stomach(1)	4		Melanoma(154;0.155)	Epithelial(46;0.241)			ATACAGAATTCCCTTCTACAT	0.398000													9	86					0	0	0.000274275	0	0
MYO5C	55930	broad.mit.edu	37	15	52529725	52529725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr15:52529725C>T	uc010bff.2	-	22	2959	c.2822G>A	c.(2821-2823)CGA>CAA	p.R941Q	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	941	Potential.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		CTCGTAATTTCGCCTGTGAGT	0.522000													10	271					0	0	0.000673444	0	0
ADAM10	102	broad.mit.edu	37	15	58957325	58957325	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr15:58957325G>A	uc002afd.1	-	5	1000	c.556C>T	c.(556-558)CAG>TAG	p.Q186*	ADAM10_uc010bgc.1_RNA|ADAM10_uc010ugz.1_Intron|ADAM10_uc002afe.1_Intron|ADAM10_uc002afg.2_Nonsense_Mutation_p.Q186*	NM_001110	NP_001101	O14672	ADA10_HUMAN	ADAM metallopeptidase domain 10 precursor	186	Extracellular (Potential).				cell-cell signaling|constitutive protein ectodomain proteolysis|epidermal growth factor receptor signaling pathway|in utero embryonic development|integrin-mediated signaling pathway|monocyte activation|negative regulation of cell adhesion|Notch receptor processing|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of T cell chemotaxis|protein phosphorylation|response to tumor necrosis factor	cell surface|endomembrane system|Golgi-associated vesicle|integral to membrane|nucleus|plasma membrane	integrin binding|metalloendopeptidase activity|protein homodimerization activity|protein kinase binding|SH3 domain binding|zinc ion binding			skin(2)	2				GBM - Glioblastoma multiforme(80;0.202)		CCAGTCATCTGGTATTTCCTC	0.363000													8	163					0	0	0.000442599	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85053188	85053188	+	RNA	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr15:85053188C>G	uc002bkm.2	-	9		c.1859G>C			uc002bkl.1_5'Flank	NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						CCCTGTTCTCCGCAGCCCGAA	0.488000													6	13					0	0	3.59834e-05	0	0
ADCY9	115	broad.mit.edu	37	16	4016764	4016764	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr16:4016764C>G	uc002cvx.2	-	11	3613	c.3074G>C	c.(3073-3075)CGG>CCG	p.R1025P		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	1025	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						TGCCTGGTCCCGCATGCTCTG	0.577000													3	94					0	0	0.00024832	0	0
TMC5	79838	broad.mit.edu	37	16	19451905	19451905	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr16:19451905C>G	uc002dgc.3	+	3	1294	c.545C>G	c.(544-546)CCA>CGA	p.P182R	TMC5_uc010vaq.1_Missense_Mutation_p.P182R|TMC5_uc002dgb.3_Missense_Mutation_p.P182R|TMC5_uc010var.1_Missense_Mutation_p.P182R	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	182	Extracellular (Potential).					integral to membrane				skin(1)	1						TTGAACCATCCAGGATCCAGA	0.468000													4	120					0	0	0.00024832	0	0
AP1G1	164	broad.mit.edu	37	16	71768553	71768554	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr16:71768553_71768554CC>AA	uc010cgg.2	-	22	2639_2640	c.2325_2326GG>TT	c.(2323-2328)ACGGGG>ACTTGG	p.G776W	AP1G1_uc002fba.2_Missense_Mutation_p.G779W|AP1G1_uc002fbb.2_Missense_Mutation_p.G799W|AP1G1_uc002faz.2_Missense_Mutation_p.G193W	NM_001128	NP_001119	O43747	AP1G1_HUMAN	adaptor-related protein complex 1, gamma 1	776	GAE.				endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|recycling endosome	kinesin binding|protein transporter activity			ovary(2)	2		Ovarian(137;0.125)				GTGATGGTCCCCGTGTTAAATG	0.450000													8	249					0	0	6.4e-05	0	0
PMFBP1	83449	broad.mit.edu	37	16	72188156	72188156	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr16:72188156G>A	uc002fcc.3	-	4	540	c.368C>T	c.(367-369)TCC>TTC	p.S123F	PMFBP1_uc002fcd.2_Missense_Mutation_p.S123F|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_5'UTR	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	123										ovary(2)	2		Ovarian(137;0.179)				AACCAGGTCGGAAGTCTGCTT	0.443000													6	108					0	0	3.59834e-05	0	0
IKZF3	22806	broad.mit.edu	37	17	37922213	37922213	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr17:37922213A>C	uc002hsu.2	-	8	1422	c.1360T>G	c.(1360-1362)TGT>GGT	p.C454G	IKZF3_uc002htd.2_Missense_Mutation_p.C420G|IKZF3_uc010cwd.2_Missense_Mutation_p.C311G|IKZF3_uc002hsv.2_Missense_Mutation_p.C381G|IKZF3_uc010cwe.2_Missense_Mutation_p.C320G|IKZF3_uc010cwf.2_Missense_Mutation_p.C272G|IKZF3_uc010cwg.2_Missense_Mutation_p.C233G|IKZF3_uc002hsw.2_Missense_Mutation_p.C415G|IKZF3_uc002hsx.2_Missense_Mutation_p.C398G|IKZF3_uc002hsy.2_Missense_Mutation_p.C415G|IKZF3_uc002hsz.2_Missense_Mutation_p.C359G|IKZF3_uc002hta.2_Missense_Mutation_p.C376G|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Missense_Mutation_p.C367G|IKZF3_uc002htc.2_Missense_Mutation_p.C207G|IKZF3_uc010wel.1_Missense_Mutation_p.C207G	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	454	C2H2-type 5.				B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CAGTGGTCACACCGATACACA	0.552000													4	106					0	0	0.000602214	0	0
TBC1D16	125058	broad.mit.edu	37	17	77921472	77921472	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr17:77921472G>C	uc002jxj.2	-	9	1816	c.1700C>G	c.(1699-1701)CCC>CGC	p.P567R	TBC1D16_uc002jxh.2_Missense_Mutation_p.P205R|TBC1D16_uc002jxi.2_Missense_Mutation_p.P192R|TBC1D16_uc002jxk.1_Missense_Mutation_p.P205R	NM_019020	NP_061893	Q8TBP0	TBC16_HUMAN	TBC1 domain family, member 16	567	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.00739)|BRCA - Breast invasive adenocarcinoma(99;0.0819)			CTCGTCCCGGGGTGAGCTGAC	0.612000													3	52					0	0	0.00024832	0	0
RNF213	57674	broad.mit.edu	37	17	78337016	78337016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr17:78337016C>T	uc002jyh.1	+	15	5912	c.5689C>T	c.(5689-5691)CGT>TGT	p.R1897C	uc002jyi.1_Intron|RNF213_uc010dhw.1_Missense_Mutation_p.R279C	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			TTTCAGAAGCCGTCTGCAGAA	0.552000													5	82					0	0	8.12818e-05	0	0
LMNB2	84823	broad.mit.edu	37	19	2430942	2430943	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr19:2430942_2430943CG>AT	uc002lvy.2	-	12	1856_1857	c.1769_1770CG>AT	c.(1768-1770)CCG>CAT	p.P590H	LMNB2_uc010dtc.1_5'Flank	NM_032737	NP_116126	Q03252	LMNB2_HUMAN	lamin B2	590	Tail.					nuclear inner membrane	structural molecule activity			large_intestine(1)|ovary(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGTGGTCCTCGGGTCCCCCTG	0.574000													7	235					0	0	6.4e-05	0	0
MUC16	94025	broad.mit.edu	37	19	9088068	9088068	+	Silent	SNP	G	C	C			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr19:9088068G>C	uc002mkp.2	-	1	3951	c.3747C>G	c.(3745-3747)CCC>CCG	p.P1249P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1249	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGGATGCTGGGTGTGTTTG	0.522000													5	309					0	0	0.000602214	0	0
ZNF430	80264	broad.mit.edu	37	19	21240178	21240178	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr19:21240178A>G	uc002npj.2	+	5	1174	c.1064A>G	c.(1063-1065)AAC>AGC	p.N355S	ZNF430_uc002npk.2_Missense_Mutation_p.N354S	NM_025189	NP_079465	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	355	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2						AAAGCTTTTAACCAATCCTCA	0.388000													3	63					0	0	0.00024832	0	0
ZNF99	7652	broad.mit.edu	37	19	22941513	22941513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr19:22941513C>T	uc010xrh.1	-	5	925	c.925G>A	c.(925-927)GAA>AAA	p.E309K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				CCACATTCTTCACATTTGTAG	0.378000													5	49					0	0	3.59834e-05	0	0
ZNF550	162972	broad.mit.edu	37	19	58067686	58067686	+	Missense_Mutation	SNP	G	C	C	rs145863744		TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr19:58067686G>C	uc002qpe.1	-	1	40	c.40C>G	c.(40-42)CGG>GGG	p.R14G	ZNF547_uc002qpm.3_Intron|ZNF549_uc010eud.1_3'UTR|ZNF550_uc002qpc.2_RNA|ZNF550_uc010eue.1_RNA|ZNF550_uc002qpd.2_RNA	NM_001039654	NP_001034743	Q7Z398	ZN550_HUMAN	zinc finger protein 550	23	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CACTCCTCCCGGGTAAAGGTC	0.527000													3	66					0	0	0.000602214	0	0
LHCGR	3973	broad.mit.edu	37	2	48915179	48915179	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr2:48915179G>A	uc002rwu.3	-	11	1827	c.1757C>T	c.(1756-1758)TCT>TTT	p.S586F	GTF2A1L_uc002rwt.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	586	Helical; Name=6; (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	GGCAAAAAAAGAGATAGGTGC	0.383000									Familial_Male-Limited_Precocious_Puberty				5	81					0	0	0.000602214	0	0
SNRNP200	23020	broad.mit.edu	37	2	96942933	96942933	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr2:96942933C>A	uc002svu.2	-	42	6064	c.5978G>T	c.(5977-5979)CGG>CTG	p.R1993L	SNRNP200_uc002svt.2_Missense_Mutation_p.R603L|SNRNP200_uc010yuj.1_RNA	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	1993	SEC63 2.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						CAACGCGTTCCGTTCTTCATC	0.483000													5	113					8.12818e-05	0.00195759	8.12818e-05	1	0
NBEAL1	65065	broad.mit.edu	37	2	203974999	203975000	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr2:203974999_203975000CC>AA	uc002uzt.3	+	14	2322_2323	c.1989_1990CC>AA	c.(1987-1992)TCCCTC>TCAATC	p.L664I		NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	664							binding			ovary(1)|skin(1)	2						TCTGTGATTCCCTCTGGGTAAG	0.396000													8	262					0	0	6.4e-05	0	0
TGM6	343641	broad.mit.edu	37	20	2384362	2384362	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr20:2384362G>C	uc002wfy.1	+	9	1290	c.1229G>C	c.(1228-1230)CGG>CCG	p.R410P	TGM6_uc010gal.1_Missense_Mutation_p.R410P	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	410					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	GATGAGAGCCGGGAGCGTGTA	0.577000													3	51					0	0	0.00024832	0	0
C20orf132	140699	broad.mit.edu	37	20	35743589	35743589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr20:35743589G>A	uc010zvu.1	-	21	2643	c.2552C>T	c.(2551-2553)TCC>TTC	p.S851F	C20orf132_uc002xgk.2_Missense_Mutation_p.S473F	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	Error:Variant_position_missing_in_Q9H579_after_alignment											0		Myeloproliferative disorder(115;0.00878)				ACCAAATAAGGAGAACAGGGT	0.423000													7	57					0	0	8.12818e-05	0	0
SLC5A3	6526	broad.mit.edu	37	21	35467932	35467933	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr21:35467932_35467933GG>TT	uc002yto.2	+	2	947_948	c.435_436GG>TT	c.(433-438)TCGGGT>TCTTGT	p.G146C	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	146	Cytoplasmic (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						ATCTGTATTCGGGTGCCCTTTT	0.470000													17	625					0	0	6.4e-05	0	0
RASD2	23551	broad.mit.edu	37	22	35947611	35947611	+	Silent	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr22:35947611C>T	uc003anx.2	+	3	538	c.333C>T	c.(331-333)CGC>CGT	p.R111R	RASD2_uc003any.2_Silent_p.R111R	NM_014310	NP_055125	Q96D21	RHES_HUMAN	RASD family, member 2 precursor	111					locomotory behavior|positive regulation of protein kinase B signaling cascade|positive regulation of protein sumoylation|regulation of cAMP-mediated signaling	intracellular|plasma membrane	G-protein beta-subunit binding|GTP binding|GTPase activity			lung(2)|skin(1)	3						AGGTCAAGCGCCTTCAGAAGC	0.582000													7	86					0	0	0.000157383	0	0
IL2RB	3560	broad.mit.edu	37	22	37531454	37531454	+	Silent	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr22:37531454G>A	uc003aqv.1	-	8	863	c.732C>T	c.(730-732)CTC>CTT	p.L244L		NM_000878	NP_000869	P14784	IL2RB_HUMAN	interleukin 2 receptor beta precursor	244	Helical; (Potential).				interspecies interaction between organisms|positive regulation of survival gene product expression|protein complex assembly	external side of plasma membrane|integral to plasma membrane	interleukin-2 receptor activity				0					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	GGAGGTGGCCGAGCCACGGAA	0.592000													30	69					0	0	0.000228196	0	0
TRIOBP	11078	broad.mit.edu	37	22	38119696	38119696	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr22:38119696C>G	uc003atr.2	+	7	1404	c.1133C>G	c.(1132-1134)CCC>CGC	p.P378R	TRIOBP_uc003atu.2_Missense_Mutation_p.P206R|TRIOBP_uc003atq.1_Missense_Mutation_p.P378R|TRIOBP_uc003ats.1_Missense_Mutation_p.P206R	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	378					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CGGGAAAACCCCAGGACACCC	0.557000													3	69					0	0	6.4e-05	0	0
CYP2D7P1	1564	broad.mit.edu	37	22	42537677	42537677	+	Silent	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr22:42537677C>T	uc003bci.2	-	6	963	c.582G>A	c.(580-582)GGG>GGA	p.G194G	CYP2D7P1_uc003bcg.2_5'UTR|CYP2D7P1_uc003bch.2_5'UTR|CYP2D7P1_uc010gyv.2_Intron|CYP2D7P1_uc010gyw.2_RNA|CYP2D7P1_uc010gyx.1_Silent_p.G194G	NR_002570				SubName: Full=Cytochrome P450 2D6;          EC=1.14.14.1;												0						TCTCAGGGCTCCCCTTGGCCT	0.612000													6	16					0	0	8.12818e-05	0	0
EFCAB6	64800	broad.mit.edu	37	22	44067971	44067971	+	Missense_Mutation	SNP	C	G	G	rs145170325		TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr22:44067971C>G	uc003bdy.1	-	15	1737	c.1522G>C	c.(1522-1524)GCT>CCT	p.A508P	EFCAB6_uc003bdz.1_Missense_Mutation_p.A356P|EFCAB6_uc010gzi.1_Missense_Mutation_p.A356P|EFCAB6_uc010gzk.1_RNA	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	508	EF-hand 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TTATAAAAAGCTTGTAGGTTC	0.363000													8	80					0	0	0.000274275	0	0
BRD1	23774	broad.mit.edu	37	22	50217210	50217210	+	Silent	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr22:50217210G>A	uc003biv.2	-	1	1243	c.756C>T	c.(754-756)CCC>CCT	p.P252P	BRD1_uc011arf.1_5'UTR|BRD1_uc011arg.1_Silent_p.P252P|BRD1_uc011arh.1_Silent_p.P252P|BRD1_uc003biu.3_Silent_p.P252P	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	252	PHD-type.				histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		ACTGGCCCTCGGGGATGTAGG	0.637000													5	14					0	0	0.000602214	0	0
RPL32	6161	broad.mit.edu	37	3	12880913	12880913	+	Silent	SNP	G	C	C			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr3:12880913G>C	uc003bxl.2	-	2	426	c.213C>G	c.(211-213)CCC>CCG	p.P71P	RPL32_uc003bxm.2_Silent_p.P71P|RPL32_uc003bxn.2_Silent_p.P71P	NM_001007074	NP_001007075	P62910	RL32_HUMAN	ribosomal protein L32	71					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	protein binding|structural constituent of ribosome			ovary(1)	1						GGAAGCCACTGGGCAGCATGT	0.493000													5	163					0	0	0.000602214	0	0
SLC6A6	6533	broad.mit.edu	37	3	14485161	14485161	+	Silent	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr3:14485161C>T	uc010heg.2	+	10	310	c.19C>T	c.(19-21)CTG>TTG	p.L7L	SLC6A6_uc010hee.1_Silent_p.L7L|SLC6A6_uc003byp.2_Silent_p.L7L|SLC6A6_uc010hef.1_RNA|SLC6A6_uc003byq.2_Silent_p.L7L|SLC6A6_uc003byr.2_RNA	NM_001134367	NP_001127839	P31641	SC6A6_HUMAN	solute carrier family 6 (neurotransmitter	7	Cytoplasmic (Potential).				cellular amino acid metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity|taurine:sodium symporter activity			ovary(1)	1						CAAGGAGAAGCTGCAGTGTCT	0.552000													5	72					0	0	8.12818e-05	0	0
CCR8	1237	broad.mit.edu	37	3	39373990	39373990	+	Silent	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr3:39373990C>T	uc010hhr.2	+	2	306	c.168C>T	c.(166-168)GTC>GTT	p.V56V	CCR8_uc003cjm.2_Intron	NM_005201	NP_005192	P51685	CCR8_HUMAN	chemokine (C-C motif) receptor 8	56	Helical; Name=1; (Potential).				cell adhesion|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	coreceptor activity			ovary(1)|lung(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0504)|Kidney(284;0.0635)		ACAGCCTGGTCATCCTGGTCC	0.493000													12	188					0	0	0.000151284	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64619195	64619195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr3:64619195G>A	uc003dmg.2	-	14	2160	c.2128C>T	c.(2128-2130)CCT>TCT	p.P710S	ADAMTS9_uc011bfo.1_Missense_Mutation_p.P682S|ADAMTS9_uc003dmh.1_Missense_Mutation_p.P539S|ADAMTS9_uc003dmk.1_Missense_Mutation_p.P710S	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	710	Cys-rich.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TGGCCACAAGGAGTTCCATCT	0.507000													18	351					0	0	0.000175454	0	0
CASR	846	broad.mit.edu	37	3	122002629	122002629	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr3:122002629G>A	uc003eev.3	+	7	2200	c.1828G>A	c.(1828-1830)GAG>AAG	p.E610K	CASR_uc003eew.3_Missense_Mutation_p.E620K	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	610	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GTCGTGGACGGAGCCCTTTGG	0.527000													5	52					0	0	0.000602214	0	0
MBNL1	4154	broad.mit.edu	37	3	152150597	152150597	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr3:152150597C>G	uc003ezm.2	+	3	1226	c.437C>G	c.(436-438)CCG>CGG	p.P146R	MBNL1_uc003ezh.2_Missense_Mutation_p.P146R|MBNL1_uc003ezi.2_Missense_Mutation_p.P146R|MBNL1_uc003ezj.2_Missense_Mutation_p.P89R|MBNL1_uc003ezl.2_Missense_Mutation_p.P146R|MBNL1_uc003ezp.2_Missense_Mutation_p.P146R|MBNL1_uc003ezn.2_Intron|MBNL1_uc003ezo.2_Intron|MBNL1_uc010hvp.2_Missense_Mutation_p.P54R	NM_207293	NP_997176	Q9NR56	MBNL1_HUMAN	muscleblind-like 1 isoform c	146					embryonic limb morphogenesis|in utero embryonic development|myoblast differentiation|nervous system development	nucleus|stress granule	double-stranded RNA binding|protein binding|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			AGCCTGGTCCCGGCAGAGATC	0.517000													4	161					0	0	0.000602214	0	0
SCHIP1	29970	broad.mit.edu	37	3	158980374	158980374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr3:158980374G>A	uc003fcq.1	+	4	298	c.193G>A	c.(193-195)GAG>AAG	p.E65K	SCHIP1_uc003fcr.1_5'UTR|IQCJ_uc003fco.2_Missense_Mutation_p.E65K|IQCJ_uc010hvy.1_Missense_Mutation_p.E38K|IQCJ_uc003fcp.1_Missense_Mutation_p.E65K	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	Error:Variant_position_missing_in_Q9P0W5_after_alignment						cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			GCAGCGGCAGGAGCCCCTGGG	0.537000													6	73					0	0	8.12818e-05	0	0
SEL1L3	23231	broad.mit.edu	37	4	25780805	25780805	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr4:25780805G>T	uc003gru.3	-	16	2630	c.2478C>A	c.(2476-2478)TTC>TTA	p.F826L	SEL1L3_uc003grv.2_Missense_Mutation_p.F233L	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	826	Sel1-like 6.					integral to membrane	binding				0						CAGCCTTATGGAAATATTCAC	0.468000													7	123					0.000157383	0.00375884	0.000157383	1	0
ARAP2	116984	broad.mit.edu	37	4	36179539	36179539	+	Silent	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr4:36179539C>T	uc003gsq.1	-	9	2105	c.1767G>A	c.(1765-1767)GAG>GAA	p.E589E	ARAP2_uc003gsr.1_Silent_p.E589E	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	589	PH 2.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						ATCCACATTTCTCAGGTGTAA	0.398000													5	106					0	0	0.000602214	0	0
AP3B1	8546	broad.mit.edu	37	5	77409636	77409636	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr5:77409636C>G	uc003kfj.2	-	19	2314	c.2189G>C	c.(2188-2190)CGG>CCG	p.R730P		NM_003664	NP_003655	O00203	AP3B1_HUMAN	adaptor-related protein complex 3, beta 1	730	Glu/Ser-rich.				endocytosis|melanosome organization	clathrin coated vesicle membrane|Golgi apparatus|membrane coat	protein phosphatase binding|protein transporter activity			central_nervous_system(1)	1		all_lung(232;0.000397)|Lung NSC(167;0.00106)|Ovarian(174;0.0105)|Prostate(461;0.215)		OV - Ovarian serous cystadenocarcinoma(54;8.23e-47)|Epithelial(54;2.74e-41)|all cancers(79;4.8e-36)		GCCTGACTCCCGTCCACTCTC	0.458000									Hermansky-Pudlak_syndrome				4	82					0	0	3.59834e-05	0	0
CDC25C	995	broad.mit.edu	37	5	137665315	137665315	+	Silent	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr5:137665315G>A	uc003lcp.1	-	3	487	c.216C>T	c.(214-216)CTC>CTT	p.L72L	CDC25C_uc003lcq.1_Intron|CDC25C_uc003lcr.1_Silent_p.L72L|CDC25C_uc011cyp.1_Silent_p.L89L|CDC25C_uc003lcs.1_Silent_p.L150L|CDC25C_uc010jet.1_Silent_p.L72L|CDC25C_uc003lct.1_Silent_p.L72L|CDC25C_uc003lcu.1_Intron	NM_001790	NP_001781	P30307	MPIP3_HUMAN	cell division cycle 25C isoform a	72					cell cycle checkpoint|cell division|cell proliferation|DNA replication|G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis|traversing start control point of mitotic cell cycle	cytosol|nucleoplasm	protein tyrosine phosphatase activity|WW domain binding			lung(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			TCGAAAGATCGAGGCAACGTT	0.418000													7	97					0	0	0.000442599	0	0
ADAM19	8728	broad.mit.edu	37	5	156915277	156915277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr5:156915277G>A	uc003lwz.2	-	21	2610	c.2546C>T	c.(2545-2547)TCC>TTC	p.S849F	ADAM19_uc003lww.1_Missense_Mutation_p.S582F|ADAM19_uc003lwy.2_Missense_Mutation_p.S448F|ADAM19_uc011ddr.1_Missense_Mutation_p.S780F	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	849	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ACTTACCTGGGAAACGATGCA	0.552000													5	123					0	0	8.12818e-05	0	0
C6orf201	404220	broad.mit.edu	37	6	4099241	4099241	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr6:4099241T>G	uc003mwa.3	+	3	861	c.93T>G	c.(91-93)AAT>AAG	p.N31K	C6orf201_uc003mvz.3_RNA|C6orf201_uc011dhw.1_Missense_Mutation_p.N31K|C6orf201_uc003mwb.3_RNA	NM_001085401	NP_001078870	Q7Z4U5	CF201_HUMAN	hypothetical protein LOC404220	31											0	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				CAGGTGAGAATCCTGAACTCT	0.388000													3	52					0	0	6.4e-05	0	0
BAT4	7918	broad.mit.edu	37	6	31630171	31630171	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr6:31630171G>C	uc003nvn.2	-	3	1588	c.943C>G	c.(943-945)CGA>GGA	p.R315G	C6orf47_uc003nvm.1_5'Flank|BAT4_uc003nvo.3_Missense_Mutation_p.R315G|BAT4_uc003nvp.3_Missense_Mutation_p.R315G|BAT4_uc003nvq.2_Missense_Mutation_p.R315G	NM_033177	NP_149417	O95872	GPAN1_HUMAN	HLA-B associated transcript 4	315						intracellular	nucleic acid binding				0						GCCACAGCTCGGGTATCCCAA	0.617000													6	270					0	0	8.12818e-05	0	0
APOBEC2	10930	broad.mit.edu	37	6	41029318	41029318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr6:41029318G>A	uc003opl.2	+	2	530	c.383G>A	c.(382-384)TGT>TAT	p.C128Y	UNC5CL_uc010jxe.1_Intron|APOBEC2_uc010jxf.2_RNA	NM_006789	NP_006780	Q9Y235	ABEC2_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	128		Zinc; catalytic.			DNA demethylation|mRNA processing		cytidine deaminase activity|RNA binding|zinc ion binding				0	Ovarian(28;0.0418)|Colorectal(47;0.196)					TCCAGCCCCTGTGCAGCGTGT	0.577000													14	139					0	0	0.000566183	0	0
GPR116	221395	broad.mit.edu	37	6	46851855	46851855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr6:46851855C>T	uc003oyo.3	-	5	771	c.482G>A	c.(481-483)GGA>GAA	p.G161E	GPR116_uc003oyp.3_Missense_Mutation_p.G161E|GPR116_uc003oyq.3_Missense_Mutation_p.G161E|GPR116_uc003oyr.2_Missense_Mutation_p.G161E	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	161	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GCAAAAAGGTCCATTGGGAGG	0.418000													6	98					0	0	8.12818e-05	0	0
COL12A1	1303	broad.mit.edu	37	6	75848209	75848209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr6:75848209G>A	uc003phs.2	-	29	5351	c.5185C>T	c.(5185-5187)CCT>TCT	p.P1729S	COL12A1_uc003pht.2_Missense_Mutation_p.P565S	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1729	Fibronectin type-III 12.			P -> A (in Ref. 1; AAC51244).	cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						GACTCATCAGGATAGATGGCA	0.373000													8	43					0	0	0.000442599	0	0
AKD1	221264	broad.mit.edu	37	6	109867143	109867143	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr6:109867143G>A	uc003ptn.2	-	26	3229	c.3152C>T	c.(3151-3153)GCT>GTT	p.A1051V	AKD1_uc011eat.1_Missense_Mutation_p.A130V	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	1051					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						TTGTTTGGCAGCTTGCTCGTT	0.343000													10	104					0	0	0.000442599	0	0
SYNJ2	8871	broad.mit.edu	37	6	158483050	158483050	+	Silent	SNP	G	C	C			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr6:158483050G>C	uc003qqx.1	+	8	1056	c.981G>C	c.(979-981)GCG>GCC	p.A327A	SYNJ2_uc011efm.1_Intron|SYNJ2_uc003qqw.1_Silent_p.A327A|SYNJ2_uc003qqy.1_Silent_p.A40A|SYNJ2_uc011efn.1_Intron|SYNJ2_uc010kjo.1_Silent_p.A276A|SYNJ2_uc003qqz.1_5'UTR	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	327	SAC.						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		CTTGCCACGCGGGCGACACGC	0.383000													4	181					0	0	0.00024832	0	0
TXNDC3	51314	broad.mit.edu	37	7	37901707	37901707	+	Silent	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr7:37901707G>A	uc003tfn.2	+	7	720	c.348G>A	c.(346-348)GAG>GAA	p.E116E		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	116	Thioredoxin.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						TGATCGATGAGGAGAGAAAAA	0.348000									Kartagener_syndrome				8	47					0	0	0.000442599	0	0
ABCA13	154664	broad.mit.edu	37	7	48556372	48556372	+	Silent	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr7:48556372G>A	uc003toq.2	+	52	13717	c.13692G>A	c.(13690-13692)TCG>TCA	p.S4564S	ABCA13_uc010kys.1_Silent_p.S1639S|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Silent_p.S294S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4564					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTTCCAGTTCGGACGTGGCTT	0.388000													10	240					0	0	6.40141e-05	0	0
SLC12A9	56996	broad.mit.edu	37	7	100454734	100454734	+	Silent	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr7:100454734C>T	uc003uwp.2	+	5	835	c.693C>T	c.(691-693)TCC>TCT	p.S231S	SLC12A9_uc003uwo.1_Silent_p.S142S|SLC12A9_uc003uwq.2_Silent_p.S142S|SLC12A9_uc011kki.1_Intron|SLC12A9_uc003uwr.2_5'UTR|SLC12A9_uc003uws.2_5'UTR|SLC12A9_uc003uwt.2_5'UTR|SLC12A9_uc003uwv.2_5'Flank	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	231	Extracellular (Potential).			S -> A (in Ref. 3; BAB40456).		integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					ATGGCTCCTCCCTGCCGCCCC	0.642000													13	91					0	0	0.000422831	0	0
BCAP29	55973	broad.mit.edu	37	7	107240940	107240940	+	Silent	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr7:107240940G>A	uc003vej.2	+	6	918	c.579G>A	c.(577-579)AAG>AAA	p.K193K	BCAP29_uc011kly.1_Silent_p.K99K|BCAP29_uc011klz.1_Silent_p.K193K|BCAP29_uc011kma.1_Silent_p.K193K	NM_018844	NP_061332	Q9UHQ4	BAP29_HUMAN	B-cell receptor-associated protein BAP29 isoform	193	Cytoplasmic (Potential).				apoptosis|intracellular protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|integral to membrane				large_intestine(1)|ovary(1)	2						AATTAAGGAAGACTTCAGATG	0.318000													5	62					0	0	0.000602214	0	0
LEP	3952	broad.mit.edu	37	7	127894610	127894610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr7:127894610G>A	uc003vml.2	+	3	355	c.298G>A	c.(298-300)GAC>AAC	p.D100N	LEP_uc003vmm.2_Missense_Mutation_p.D99N	NM_000230	NP_000221	P41159	LEP_HUMAN	leptin precursor	100					adult feeding behavior|energy reserve metabolic process|negative regulation of appetite|placenta development|positive regulation of developmental growth	extracellular space					0						AATATCCAACGACCTGGAGAA	0.567000													6	85					0	0	8.12818e-05	0	0
TSGA13	114960	broad.mit.edu	37	7	130353979	130353979	+	Silent	SNP	G	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr7:130353979G>T	uc003vqi.2	-	8	1160	c.703C>A	c.(703-705)CGG>AGG	p.R235R	COPG2_uc003vqh.1_5'Flank|TSGA13_uc003vqj.2_Silent_p.R235R	NM_052933	NP_443165	Q96PP4	TSG13_HUMAN	testis specific, 13	235										ovary(2)	2	Melanoma(18;0.0435)					AGTGGTTCCCGAATCACTTTG	0.562000													16	278					1.01871e-10	2.47426e-09	0.000132079	1	0
BRAF	673	broad.mit.edu	37	7	140453136	140453137	+	Missense_Mutation	DNP	AC	TT	TT	rs121913378		TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr7:140453136_140453137AC>TT	uc003vwc.3	-	15	1859_1860	c.1798_1799GT>AA	c.(1798-1800)GTG>AAG	p.V600K		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAGA	0.366000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)|V600M(IGR1_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				10	86					0	0	6.4e-05	0	0
RP1L1	94137	broad.mit.edu	37	8	10469909	10469909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr8:10469909C>T	uc003wtc.2	-	4	1928	c.1699G>A	c.(1699-1701)GAG>AAG	p.E567K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	567					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TCGCTGGCCTCCTGCTGAGAG	0.652000													7	104					0	0	0.000157383	0	0
SORBS3	10174	broad.mit.edu	37	8	22429260	22429260	+	Silent	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr8:22429260C>T	uc003xbv.2	+	19	2113	c.1773C>T	c.(1771-1773)TCC>TCT	p.S591S	SORBS3_uc003xbw.3_Silent_p.S249S	NM_005775	NP_005766	O60504	VINEX_HUMAN	sorbin and SH3 domain containing 3 isoform 1	591					muscle contraction|positive regulation of stress fiber assembly	cytoskeleton|cytosol|nucleus	protein binding|structural constituent of cytoskeleton|vinculin binding				0		Prostate(55;0.0421)|Breast(100;0.102)		BRCA - Breast invasive adenocarcinoma(99;0.00566)|Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)		CAGCTCTGTCCCACTCTCGAG	0.572000													4	51					0	0	3.59834e-05	0	0
ZFHX4	79776	broad.mit.edu	37	8	77765024	77765024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr8:77765024C>T	uc003yav.2	+	10	6119	c.5732C>T	c.(5731-5733)TCC>TTC	p.S1911F	ZFHX4_uc003yau.1_Missense_Mutation_p.S1956F|ZFHX4_uc003yaw.1_Missense_Mutation_p.S1911F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1911	C2H2-type 14.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AAATTGTTTTCCAATGTTCTT	0.393000										HNSCC(33;0.089)			7	69					0	0	0.000442599	0	0
POP1	10940	broad.mit.edu	37	8	99146830	99146830	+	Silent	SNP	G	C	C			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr8:99146830G>C	uc003yij.3	+	7	1054	c.954G>C	c.(952-954)CCG>CCC	p.P318P	POP1_uc011lgv.1_Silent_p.P318P|POP1_uc003yik.2_Silent_p.P318P	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	318					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			AGAGGACCCCGGGTGACCCTT	0.502000													4	74					0	0	8.12818e-05	0	0
EPPK1	83481	broad.mit.edu	37	8	144940976	144940976	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr8:144940976C>G	uc003zaa.1	-	1	6459	c.6446G>C	c.(6445-6447)CGG>CCG	p.R2149P		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	2149						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CTGCAGTGCCCGTCTGGTGTG	0.502000													4	157					0	0	0.00024832	0	0
TRPM3	80036	broad.mit.edu	37	9	73213442	73213442	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr9:73213442C>G	uc004aid.2	-	20	3149	c.2905G>C	c.(2905-2907)GGG>CGG	p.G969R	TRPM3_uc004ahu.2_Missense_Mutation_p.G799R|TRPM3_uc004ahv.2_Missense_Mutation_p.G771R|TRPM3_uc004ahw.2_Missense_Mutation_p.G841R|TRPM3_uc004ahx.2_Missense_Mutation_p.G828R|TRPM3_uc004ahy.2_Missense_Mutation_p.G831R|TRPM3_uc004ahz.2_Missense_Mutation_p.G818R|TRPM3_uc004aia.2_Missense_Mutation_p.G816R|TRPM3_uc004aib.2_Missense_Mutation_p.G806R|TRPM3_uc004aic.2_Missense_Mutation_p.G969R	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	994	Extracellular (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						ATGACCCTCCCGTCACTCCTG	0.498000													4	112					0	0	0.00024832	0	0
DNAJC25	548645	broad.mit.edu	37	9	114409479	114409479	+	Silent	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr9:114409479C>T	uc004bfl.2	+	2	485	c.429C>T	c.(427-429)GCC>GCT	p.A143A	DNAJC25-GNG10_uc004bfn.2_Intron|DNAJC25_uc004bfm.2_Silent_p.A21A	NM_001015882	NP_001015882	Q9H1X3	DJC25_HUMAN	DnaJ (Hsp40) homolog, subfamily C , member 25	143					protein folding	integral to membrane	heat shock protein binding|unfolded protein binding				0						GGCGCTTGGCCCCTAAGGTGG	0.393000													10	171					0	0	0.000151284	0	0
C9orf86	55684	broad.mit.edu	37	9	139734209	139734209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr9:139734209C>T	uc004cji.1	+	13	2090	c.1822C>T	c.(1822-1824)CCG>TCG	p.P608S	C9orf86_uc004cjj.1_Missense_Mutation_p.P609S|C9orf86_uc004cjk.1_RNA|C9orf86_uc010nbr.1_Intron|C9orf86_uc004cjl.1_RNA|C9orf86_uc010nbs.1_Missense_Mutation_p.P493S|C9orf86_uc004cjn.1_Missense_Mutation_p.P402S	NM_024718	NP_078994	Q3YEC7	PARF_HUMAN	Rab-like GTP-binding protein 1 isoform 1	608					small GTPase mediated signal transduction	cytoplasm|nucleus	GTP binding|protein binding				0	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.61e-05)|Epithelial(140;0.000183)		CCCTGCCGAGCCGCCCCCACC	0.652000													6	35					0	0	0.000157383	0	0
ZMYND19	116225	broad.mit.edu	37	9	140482271	140482272	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr9:140482271_140482272CG>AT	uc004cno.1	-	3	337_338	c.115_116CG>AT	c.(115-117)CGA>ATA	p.R39I		NM_138462	NP_612471	Q96E35	ZMY19_HUMAN	zinc finger, MYND domain containing 19	39						Golgi apparatus|plasma membrane	zinc ion binding			skin(1)	1	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.000275)|Epithelial(140;0.00047)		CACTTCCATTCGGGCCTGAGAA	0.465000													7	221					0	0	6.4e-05	0	0
MXRA5	25878	broad.mit.edu	37	X	3240756	3240756	+	Silent	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chrX:3240756C>T	uc004crg.3	-	5	3127	c.2970G>A	c.(2968-2970)GAG>GAA	p.E990E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	990						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCATCTTATCCTCATCTGGTT	0.458000													4	54					0	0	0.00024832	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27999214	27999214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chrX:27999214C>T	uc004dbx.1	-	1	353	c.238G>A	c.(238-240)GAA>AAA	p.E80K		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	80	Glu-rich.									ovary(3)|skin(1)	4						CTTTCAAGTTCGACGTCTTCA	0.378000													12	57					0	0	0.000151284	0	0
COL4A5	1287	broad.mit.edu	37	X	107816837	107816837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chrX:107816837C>T	uc004enz.1	+	9	701	c.499C>T	c.(499-501)CCA>TCA	p.P167S	COL4A5_uc011mso.1_Missense_Mutation_p.P167S	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	167	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GTCATCACTGCCAGGACCAAA	0.368000									Alport_syndrome_with_Diffuse_Leiomyomatosis				8	80					0	0	0.000673444	0	0
LUZP4	51213	broad.mit.edu	37	X	114541132	114541132	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chrX:114541132G>C	uc004eqa.2	+	4	739	c.705G>C	c.(703-705)CAG>CAC	p.Q235H	LUZP4_uc004eqb.2_Missense_Mutation_p.Q153H	NM_016383	NP_057467	Q9P127	LUZP4_HUMAN	leucine zipper protein 4	235						nucleus				ovary(2)	2						CTCGTAGCCAGGGAGATCTTG	0.478000													3	64					0	0	0.00024832	0	0
RBMY1A3P	286557	broad.mit.edu	37	Y	9160392	9160392	+	RNA	SNP	C	T	T			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chrY:9160392C>T	uc004frl.1	-	1		c.92G>A				NR_001547				Homo sapiens RBMY1A3P pseudogene, mRNA sequence.												0						GACCATATTTCCCAAACACTG	0.313000													6	46					0	0	0.000274275	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48134465	48134465	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr12:48134465delG	uc009zkp.2	-	20	2505	c.2065delC	c.(2065-2067)CGGfs	p.R689fs	uc001rpv.2_RNA|RAPGEF3_uc001rpw.2_Frame_Shift_Del_p.R24fs|RAPGEF3_uc001rpx.2_Frame_Shift_Del_p.R146fs|RAPGEF3_uc010sln.1_Frame_Shift_Del_p.R204fs|RAPGEF3_uc001rpy.2_Intron|RAPGEF3_uc009zkq.2_Frame_Shift_Del_p.R689fs|RAPGEF3_uc001rpz.3_Frame_Shift_Del_p.R731fs	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	689					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		AGCTGGGCCCGGGGGCCGGGC	0.652													7	41	---	---	---	---					
MLLT3	4300	broad.mit.edu	37	9	20413952	20413952	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2ME-06A-11D-A197-08	TCGA-EE-A2ME-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b768bb3-0f40-4421-b3b6-9b38680ccfbc	b757fe4a-ff9a-4332-b5d9-70d1e711478b	g.chr9:20413952delT	uc003zoe.2	-	5	1151	c.892delA	c.(892-894)AGGfs	p.R298fs	MLLT3_uc011lne.1_Frame_Shift_Del_p.R266fs|MLLT3_uc011lnf.1_Frame_Shift_Del_p.R295fs|MLLT3_uc003zof.2_Frame_Shift_Del_p.R99fs	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	298	Nuclear localization signal (Potential).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		CTCTTTTTCCTTTTTTTGGCT	0.393			T	MLL	ALL								10	179	---	---	---	---					
