Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ATAD3C	219293	broad.mit.edu	37	1	1396133	1396133	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:1396133C>T	uc001aft.2	+	10	1811	c.816C>T	c.(814-816)TTC>TTT	p.F272F		NM_001039211	NP_001034300	Q5T2N8	ATD3C_HUMAN	ATPase family, AAA domain containing 3C	272							ATP binding|nucleoside-triphosphatase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		CCCGCAGATTCATGCTGATCC	0.652000													21	22					0	0	1	0	0
PRKCZ	5590	broad.mit.edu	37	1	1987941	1987941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:1987941C>T	uc001aiq.2	+	3	373	c.212C>T	c.(211-213)TCC>TTC	p.S71F		NM_002744	NP_002735	Q05513	KPCZ_HUMAN	protein kinase C, zeta isoform 1	71	OPR.				anti-apoptosis|intracellular signal transduction|negative regulation of insulin receptor signaling pathway|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein complex assembly|peptidyl-serine phosphorylation|platelet activation	endosome	ATP binding|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(2)	6	all_cancers(77;0.000177)|all_epithelial(69;6.41e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;1.14e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.96e-37)|OV - Ovarian serous cystadenocarcinoma(86;3.3e-23)|GBM - Glioblastoma multiforme(42;2.85e-08)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.00294)|BRCA - Breast invasive adenocarcinoma(365;0.00493)|STAD - Stomach adenocarcinoma(132;0.00669)|KIRC - Kidney renal clear cell carcinoma(229;0.0411)|Lung(427;0.213)		TGCACGGTGTCCTCCCAGATG	0.647000													42	66					0	0	1	0	0
NPHP4	261734	broad.mit.edu	37	1	6046307	6046307	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:6046307G>A	uc001alq.1	-	2	309	c.43C>T	c.(43-45)CCT>TCT	p.P15S	NPHP4_uc001als.1_RNA|NPHP4_uc009vlt.1_RNA|NPHP4_uc001alt.1_Intron	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	15					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		GGGTGGGGAGGGACAAGCACG	0.577000													20	32					0	0	1	0	0
SLC25A33	84275	broad.mit.edu	37	1	9633421	9633421	+	Silent	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:9633421T>C	uc001apw.2	+	5	656	c.433T>C	c.(433-435)TTA>CTA	p.L145L	SLC25A33_uc001apx.2_Silent_p.L78L	NM_032315	NP_115691	Q9BSK2	S2533_HUMAN	mitochondrial carrier protein MGC4399	145	Solcar 2.				transport	integral to membrane|mitochondrial inner membrane					0	all_lung(157;0.246)	all_epithelial(116;1.16e-18)|all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Breast(348;0.00191)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.01e-08)|COAD - Colon adenocarcinoma(227;1.44e-05)|Kidney(185;0.000262)|KIRC - Kidney renal clear cell carcinoma(229;0.000957)|BRCA - Breast invasive adenocarcinoma(304;0.0019)|STAD - Stomach adenocarcinoma(132;0.00355)|READ - Rectum adenocarcinoma(331;0.0419)		CACAAATTCCTTAATGAATCC	0.284000													26	24					0	0	1	0	0
MASP2	10747	broad.mit.edu	37	1	11087497	11087497	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:11087497C>T	uc001aru.2	-	11	1527	c.1506G>A	c.(1504-1506)CTG>CTA	p.L502L		NM_006610	NP_006601	O00187	MASP2_HUMAN	mannan-binding lectin serine protease 2 isoform	502	Peptidase S1.				complement activation, classical pathway|complement activation, lectin pathway|proteolysis	extracellular region	calcium ion binding|calcium-dependent protein binding|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.071)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.12e-07)|COAD - Colon adenocarcinoma(227;7.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)|STAD - Stomach adenocarcinoma(313;0.192)		ATAGTCTTTTCAGGGTGCCCA	0.443000													122	179					0	0	1	0	0
PTCHD2	57540	broad.mit.edu	37	1	11561905	11561905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:11561905G>A	uc001ash.3	+	2	994	c.856G>A	c.(856-858)GAG>AAG	p.E286K	PTCHD2_uc001asi.1_Missense_Mutation_p.E286K	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	286	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CGGCGACGCGGAGCGCAACAT	0.637000													14	17					0	0	1	0	0
TNFRSF1B	7133	broad.mit.edu	37	1	12266803	12266803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:12266803C>T	uc001att.2	+	10	1201	c.1112C>T	c.(1111-1113)TCC>TTC	p.S371F	TNFRSF1B_uc001atu.2_Missense_Mutation_p.S176F|TNFRSF1B_uc009vnk.2_RNA	NM_001066	NP_001057	P20333	TNR1B_HUMAN	tumor necrosis factor receptor 2 precursor	371	Cytoplasmic (Potential).				apoptosis	extracellular region|integral to membrane|membrane raft|plasma membrane	tumor necrosis factor receptor activity			liver(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.72e-05)|all_lung(284;9.92e-05)|Renal(390;0.000147)|Colorectal(325;0.000584)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;5.52e-07)|COAD - Colon adenocarcinoma(227;0.000345)|BRCA - Breast invasive adenocarcinoma(304;0.000353)|Kidney(185;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00302)|STAD - Stomach adenocarcinoma(313;0.00815)|READ - Rectum adenocarcinoma(331;0.0284)	Etanercept(DB00005)|Infliximab(DB00065)	GCAGATTCTTCCCCTGGTGGC	0.592000													76	105					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907852	12907852	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:12907852C>T	uc009vno.2	-	1	386	c.291G>A	c.(289-291)GTG>GTA	p.V97V	HNRNPCL1_uc010obf.1_Silent_p.V97V	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	97							nucleic acid binding|nucleotide binding				0						CTGATCGTTTCACACCTGCGT	0.493000													29	206					0	0	1	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12918948	12918948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:12918948G>A	uc001aum.1	+	2	171	c.84G>A	c.(82-84)ATG>ATA	p.M28I		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	28											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCTCTGCCATGGAGGAGCTGC	0.607000													88	199					0	0	1	0	0
LOC440563	440563	broad.mit.edu	37	1	13183493	13183493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:13183493G>A	uc010obg.1	-	1	475	c.380C>T	c.(379-381)CCA>CTA	p.P127L		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	127						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						TACACGTGCTGGGAAACTGTA	0.522000													14	179					0	0	1	0	0
SPEN	23013	broad.mit.edu	37	1	16255687	16255687	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:16255687G>A	uc001axk.1	+	11	3156	c.2952G>A	c.(2950-2952)AGG>AGA	p.R984R	SPEN_uc010obp.1_Silent_p.R943R	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	984	Potential.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TGGAAGCCAGGAAAAGGCGCT	0.498000													28	36					0	0	1	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946437	16946437	+	RNA	SNP	C	T	T	rs2262202		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:16946437C>T	uc010ocf.1	-	3		c.461G>A			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						AGCCTTCCGCCGGGCCAGCAG	0.672000													7	46					0	0	1	0	0
PADI6	353238	broad.mit.edu	37	1	17721601	17721601	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:17721601A>C	uc001bak.1	+	13	1492	c.1492A>C	c.(1492-1494)AAG>CAG	p.K498Q		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	490					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	TGAGGGCAAAAAGGTCTGCTT	0.488000													80	132					0	0	1	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809473	18809473	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:18809473G>A	uc001bax.2	+	1	2050	c.1998G>A	c.(1996-1998)AAG>AAA	p.K666K	KLHDC7A_uc009vpg.2_Silent_p.K448K	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	666	Kelch 5.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GGGGCAGCAAGGACCGCACGG	0.682000													20	36					0	0	1	0	0
UBR4	23352	broad.mit.edu	37	1	19501449	19501449	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:19501449A>G	uc001bbi.2	-	21	2856	c.2852T>C	c.(2851-2853)GTG>GCG	p.V951A	UBR4_uc001bbm.1_Missense_Mutation_p.V162A	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	951					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TCCTAGTACCACAGAATCAAG	0.433000													63	94					0	0	1	0	0
ZBTB40	9923	broad.mit.edu	37	1	22852823	22852823	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:22852823C>T	uc001bft.2	+	19	4165	c.3654C>T	c.(3652-3654)CTC>CTT	p.L1218L	ZBTB40_uc001bfu.2_Silent_p.L1218L|ZBTB40_uc009vqi.1_Silent_p.L1106L	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	1218					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		GCTCTGAGCTCGTGGCGGTGA	0.582000													105	163					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23191529	23191529	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:23191529G>C	uc009vqj.1	+	5	1272	c.1127G>C	c.(1126-1128)GGG>GCG	p.G376A	EPHB2_uc001bge.2_Missense_Mutation_p.G376A|EPHB2_uc001bgf.2_Missense_Mutation_p.G376A|EPHB2_uc010odu.1_Missense_Mutation_p.G376A|hsa-mir-4253|MI0015860_5'Flank	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	376	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		ACCCGCTGCGGGGACAATGTA	0.637000									Hereditary_Prostate_Cancer				52	70					0	0	1	0	0
IL22RA1	58985	broad.mit.edu	37	1	24447847	24447847	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:24447847G>A	uc001biq.1	-	7	1212	c.1173C>T	c.(1171-1173)GCC>GCT	p.A391A	IL22RA1_uc010oeg.1_Silent_p.A323A|IL22RA1_uc009vrb.1_Silent_p.A255A|IL22RA1_uc010oeh.1_Intron	NM_021258	NP_067081	Q8N6P7	I22R1_HUMAN	interleukin 22 receptor, alpha 1 precursor	391	Cytoplasmic (Potential).					integral to membrane	interferon receptor activity			skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000992)|all_lung(284;0.00138)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-24)|Colorectal(126;6.43e-08)|COAD - Colon adenocarcinoma(152;3.51e-06)|GBM - Glioblastoma multiforme(114;5.06e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00911)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.148)		TGGCTTGAGGGGCATAGGAGG	0.587000													70	108					0	0	1	0	0
CATSPER4	378807	broad.mit.edu	37	1	26526455	26526455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:26526455G>A	uc010oez.1	+	7	893	c.893G>A	c.(892-894)GGC>GAC	p.G298D	CATSPER4_uc010oey.1_Missense_Mutation_p.G120D|CATSPER4_uc009vsf.2_RNA	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	298	Helical; Name=Segment S6; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		GCCTTCATTGGCATCAACCTG	0.517000													33	36					0	0	1	0	0
ADC	113451	broad.mit.edu	37	1	33562347	33562347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:33562347C>T	uc001bwr.2	+	9	1380	c.793C>T	c.(793-795)CCA>TCA	p.P265S	ADC_uc001bws.2_Missense_Mutation_p.P265S|ADC_uc009vue.2_Missense_Mutation_p.P265S|ADC_uc001bwt.1_Missense_Mutation_p.P170S|ADC_uc001bwu.2_Missense_Mutation_p.P170S|ADC_uc001bwv.2_Missense_Mutation_p.P170S|ADC_uc001bww.2_Missense_Mutation_p.P170S|ADC_uc001bwx.1_Missense_Mutation_p.P242S|ADC_uc001bwz.1_Missense_Mutation_p.P265S|ADC_uc009vuf.1_Missense_Mutation_p.P107S|ADC_uc001bwy.1_Missense_Mutation_p.P114S|ADC_uc009vug.2_Missense_Mutation_p.P265S	NM_052998	NP_443724	Q96A70	ADC_HUMAN	ODC antizyme inhibitor-2	265					polyamine biosynthetic process|spermatogenesis	cytosol	arginine decarboxylase activity			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)			L-Arginine(DB00125)|Pyridoxal Phosphate(DB00114)	CCTGTACTTCCCAGAGGGCTG	0.522000													85	113					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34182069	34182069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:34182069C>T	uc001bxn.1	-	20	2943	c.2914G>A	c.(2914-2916)GAA>AAA	p.E972K	CSMD2_uc001bxm.1_Missense_Mutation_p.E1012K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	972	Extracellular (Potential).|CUB 6.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGGCCACTTTCCAGGTGGAAG	0.577000													26	33					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34209054	34209054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:34209054G>A	uc001bxn.1	-	14	1909	c.1880C>T	c.(1879-1881)CCT>CTT	p.P627L	CSMD2_uc001bxm.1_Missense_Mutation_p.P667L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	627	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ATCAAACTGAGGCTCCACGTC	0.597000													74	113					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	41976848	41976848	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:41976848G>A	uc001cgz.3	-	9	7708	c.6495C>T	c.(6493-6495)CAC>CAT	p.H2165H	HIVEP3_uc001cha.3_Silent_p.H2164H|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	2165					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GGATGTGGCCGTGGAAGTCAT	0.637000													4	124					0	0	1	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47365968	47365968	+	RNA	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:47365968G>A	uc001cqo.1	-	1		c.180C>T			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						GGGGGTGCAGGAAACAGGTGC	0.483000													46	66					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47395831	47395831	+	Missense_Mutation	SNP	G	A	A	rs58897090		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:47395831G>A	uc001cqp.3	-	12	1567	c.1516C>T	c.(1516-1518)CTC>TTC	p.L506F		NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	506			NGIHLRLRRLPNPCEDKDQL -> MESTCVSGGSLTLVKTR TSFEGLHLPSCLPDPRFCPLPVCPYPVFCLPTFPSSHLPAV PQSACPSLSHLSPGLPTCLSTCLLPTCISCWEKS (in CYP4A11V).		long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	AGCCTCCTGAGACGCAGGTGG	0.428000													8	86					0	0	1	0	0
C8A	731	broad.mit.edu	37	1	57351711	57351711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:57351711G>A	uc001cyo.2	+	7	1099	c.967G>A	c.(967-969)GAT>AAT	p.D323N		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	323	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GGAGCTTCCAGATCAGTACAA	0.413000													51	87					0	0	1	0	0
LEPR	3953	broad.mit.edu	37	1	66102394	66102394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:66102394G>A	uc001dci.2	+	20	3396	c.3194G>A	c.(3193-3195)GGA>GAA	p.G1065E	LEPR_uc009waq.2_3'UTR	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	1065	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		AAATTGGAGGGAAATTTCCCT	0.373000													77	133					0	0	1	0	0
NEXN	91624	broad.mit.edu	37	1	78408167	78408167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:78408167G>A	uc001dic.3	+	13	1978	c.1681G>A	c.(1681-1683)GAA>AAA	p.E561K	NEXN_uc001dib.3_Missense_Mutation_p.E497K|NEXN_uc001did.1_Missense_Mutation_p.E471K|NEXN_uc001dif.1_Missense_Mutation_p.E453K|NEXN_uc001dig.3_Missense_Mutation_p.E202K	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	561	Glu-rich.				regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		GGAGGAGGAGGAAGAAGGTAG	0.388000													23	66					0	0	1	0	0
PTGFR	5737	broad.mit.edu	37	1	78958681	78958681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:78958681G>A	uc001din.2	+	2	519	c.253G>A	c.(253-255)GGA>AGA	p.G85R	PTGFR_uc001dim.2_Missense_Mutation_p.G85R	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	85	Helical; Name=2; (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	TCTCATCAATGGAGCCATAGC	0.413000													84	131					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87045039	87045039	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:87045039G>A	uc009wcs.2	+	13	2169	c.2125G>A	c.(2125-2127)GAA>AAA	p.E709K	CLCA4_uc009wct.2_Missense_Mutation_p.E472K|CLCA4_uc009wcu.2_Missense_Mutation_p.E529K	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	709						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		TAATGCAGGGGAAATTGAAGC	0.403000													30	39					0	0	1	0	0
CLCA3P	9629	broad.mit.edu	37	1	87104641	87104641	+	RNA	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:87104641G>A	uc010osh.1	+	5		c.676G>A				NR_024604				Synthetic construct DNA, clone: pF1KB7225, Homo sapiens CLCA3 gene for chloride channel, calcium activated, family member 3, without stop codon, in Flexi system.												0						AGGGCTGTATGAAGCAAAATG	0.413000													48	66					0	0	1	0	0
EVI5	7813	broad.mit.edu	37	1	92979374	92979374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:92979374G>A	uc001dox.2	-	18	2282	c.2272C>T	c.(2272-2274)CCT>TCT	p.P758S	EVI5_uc010otf.1_Missense_Mutation_p.P769S	NM_005665	NP_005656	O60447	EVI5_HUMAN	ecotropic viral integration site 5	758	Targeting to the centrosomes.|Interaction with AURKB and INCENP.				cell cycle|cell division|cell proliferation|multicellular organismal development	microtubule organizing center|nucleus|spindle	protein binding|Rab GTPase activator activity			ovary(1)|breast(1)	2		all_lung(203;0.00146)|Lung NSC(277;0.00565)|all_neural(321;0.185)|Melanoma(281;0.193)|Glioma(108;0.203)		Epithelial(280;8.09e-25)|OV - Ovarian serous cystadenocarcinoma(397;1.27e-22)|all cancers(265;1.74e-21)|GBM - Glioblastoma multiforme(16;0.00233)|BRCA - Breast invasive adenocarcinoma(282;0.211)		CCGTGCAAAGGAAAACCAACA	0.433000													50	67					0	0	1	0	0
VCAM1	7412	broad.mit.edu	37	1	101188810	101188810	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:101188810T>C	uc001dti.2	+	3	695	c.575T>C	c.(574-576)GTT>GCT	p.V192A	VCAM1_uc001dtj.2_Missense_Mutation_p.V192A|VCAM1_uc010ouj.1_Missense_Mutation_p.V130A	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	192	Ig-like C2-type 2.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	ATTGGAAAAGTTCTTGTTTGC	0.418000													49	77					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103444439	103444439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:103444439G>A	uc001dul.2	-	34	3004	c.2686C>T	c.(2686-2688)CCC>TCC	p.P896S	COL11A1_uc001duk.2_Missense_Mutation_p.P92S|COL11A1_uc001dum.2_Missense_Mutation_p.P908S|COL11A1_uc001dun.2_Missense_Mutation_p.P857S|COL11A1_uc009weh.2_Missense_Mutation_p.P780S	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	896	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TTCCCAGTGGGACCTCTTGCA	0.408000													42	79					0	0	1	0	0
GNAI3	2773	broad.mit.edu	37	1	110091367	110091367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:110091367G>A	uc001dxz.2	+	1	182	c.25G>A	c.(25-27)GAC>AAC	p.D9N		NM_006496	NP_006487	P08754	GNAI3_HUMAN	guanine nucleotide binding protein (G protein),	9					cell cycle|cell division|inhibition of adenylate cyclase activity by G-protein signaling pathway|platelet activation|synaptic transmission	centrosome|heterotrimeric G-protein complex|midbody	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|metabotropic serotonin receptor binding|signal transducer activity			ovary(1)	1		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.046)|Colorectal(144;0.119)|Epithelial(280;0.139)|all cancers(265;0.147)|LUSC - Lung squamous cell carcinoma(189;0.237)		GAGCGCCGAAGACAAGGCGGC	0.647000													11	24					0	0	1	0	0
GSTM1	2944	broad.mit.edu	37	1	110230843	110230843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:110230843G>A	uc001dyk.2	+	2	166	c.88G>A	c.(88-90)GAA>AAA	p.E30K	GSTM1_uc001dyl.2_Missense_Mutation_p.E30K	NM_000561	NP_000552	P09488	GSTM1_HUMAN	glutathione S-transferase mu 1 isoform 1	30	GST N-terminal.				xenobiotic metabolic process	cytosol	glutathione transferase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		all cancers(265;0.0122)|Colorectal(144;0.0129)|Epithelial(280;0.0146)|Lung(183;0.0422)|COAD - Colon adenocarcinoma(174;0.047)|LUSC - Lung squamous cell carcinoma(189;0.227)	Glutathione(DB00143)	AAGCTATGAGGAAAAGAAGTA	0.602000									Melanoma_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				147	203					0	0	1	0	0
HIPK1	204851	broad.mit.edu	37	1	114516050	114516050	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:114516050C>T	uc001eem.2	+	16	3710	c.3549C>T	c.(3547-3549)TCC>TCT	p.S1183S	HIPK1_uc001een.2_Silent_p.S1183S|HIPK1_uc001eeo.2_Silent_p.S809S|HIPK1_uc001eep.2_Silent_p.S789S|HIPK1_uc001eeq.2_Silent_p.S475S	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	1183					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCACCCAATCCTACATTGGGT	0.547000													115	187					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115168055	115168055	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:115168055G>A	uc001efd.1	-	4	1253	c.551C>T	c.(550-552)TCA>TTA	p.S184L	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.S184L	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	184										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TATTCCGTATGAACTATCCAG	0.383000													35	48					0	0	1	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458000	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			137	185					2.70426e-77	2.74481e-77	1	1	0
SYCP1	6847	broad.mit.edu	37	1	115401232	115401232	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:115401232G>A	uc001efr.2	+	6	565	c.356G>A	c.(355-357)TGG>TAG	p.W119*	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Nonsense_Mutation_p.W119*|SYCP1_uc009wgw.2_Nonsense_Mutation_p.W119*	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	119	Nuclear localization signal (Potential).|Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		ATAAAAAAATGGAAAGTAAGT	0.328000													41	70					0	0	1	0	0
CD2	914	broad.mit.edu	37	1	117311323	117311323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:117311323G>A	uc001egu.3	+	5	1003	c.974G>A	c.(973-975)GGC>GAC	p.G325D		NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	325	Cytoplasmic (Potential).|Pro-rich.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	CAGCAGAAAGGCCCGCCCCTC	0.567000													78	132					0	0	1	0	0
ADAM30	11085	broad.mit.edu	37	1	120437341	120437341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:120437341C>T	uc001eij.2	-	1	1773	c.1619G>A	c.(1618-1620)GGA>GAA	p.G540E		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	540	Cys-rich.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		ATTTCGAATTCCTGTAATCTC	0.393000													51	62					0	0	1	0	0
NBPF9	400818	broad.mit.edu	37	1	144828683	144828683	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:144828683C>G	uc009wig.1	+	23	2804	c.2728C>G	c.(2728-2730)CAG>GAG	p.Q910E	NBPF9_uc010oxn.1_Missense_Mutation_p.Q808E|NBPF9_uc010oxo.1_Missense_Mutation_p.Q835E|NBPF9_uc010oxr.1_Missense_Mutation_p.Q937E|NBPF9_uc010oxt.1_Missense_Mutation_p.Q725E|NBPF9_uc001ekg.1_Missense_Mutation_p.Q237E|NBPF9_uc001ekk.1_Missense_Mutation_p.Q481E|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Missense_Mutation_p.Q237E|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.Q570E|uc001elr.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	910	NBPF 7.					cytoplasm					0						ATTTGAGGAACAGCACATCAG	0.438000													4	273					0	0	1	0	0
ANKRD35	148741	broad.mit.edu	37	1	145558498	145558498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:145558498G>A	uc001eob.1	+	6	547	c.439G>A	c.(439-441)GAC>AAC	p.D147N	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_5'UTR	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	147	ANK 3.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AGCCTTCCTGGACGTGTTGGA	0.547000													79	107					0	0	1	0	0
ANKRD35	148741	broad.mit.edu	37	1	145560240	145560240	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:145560240G>A	uc001eob.1	+	8	834	c.726G>A	c.(724-726)CTG>CTA	p.L242L	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Silent_p.L85L	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	242	ANK 6.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AGCAGGCCCTGAGCCGGCGGC	0.557000													61	67					0	0	1	0	0
BCL9	607	broad.mit.edu	37	1	147094285	147094285	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:147094285C>G	uc001epq.2	+	9	3856	c.3116C>G	c.(3115-3117)TCC>TGC	p.S1039C	BCL9_uc010ozr.1_Missense_Mutation_p.S965C	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	1039	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					GATGACGACTCCCCTCCAGCT	0.473000			T	IGH@|IGL@	B-ALL								75	129					0	0	1	0	0
OTUD7B	56957	broad.mit.edu	37	1	149916222	149916222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:149916222G>A	uc001etn.2	-	12	2422	c.2066C>T	c.(2065-2067)TCC>TTC	p.S689F		NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	689					negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			GTAGCCAGTGGAAAATGCCAT	0.642000													79	99					0	0	1	0	0
TDRKH	11022	broad.mit.edu	37	1	151754010	151754010	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:151754010G>A	uc009wnb.1	-	3	360	c.178C>T	c.(178-180)CCC>TCC	p.P60S	TDRKH_uc001eyy.2_5'UTR|TDRKH_uc001ezb.3_Missense_Mutation_p.P60S|TDRKH_uc001ezc.3_Missense_Mutation_p.P60S|TDRKH_uc001eza.3_Missense_Mutation_p.P60S|TDRKH_uc001ezd.3_Missense_Mutation_p.P60S|TDRKH_uc010pdn.1_5'UTR	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	60	KH 1.						RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GCCTCCTGGGGAACCCGCATC	0.463000													89	121					0	0	1	0	0
RORC	6097	broad.mit.edu	37	1	151786028	151786028	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:151786028G>A	uc001ezh.2	-	7	1110	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	RORC_uc001ezg.2_Silent_p.F313F|RORC_uc010pdo.1_Silent_p.F388F|RORC_uc010pdp.1_Silent_p.F334F	NM_005060	NP_005051	P51449	RORG_HUMAN	RAR-related orphan receptor C isoform a	334	Ligand-binding.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GCCTCTTGGCGAACTCCACCA	0.612000													50	50					0	0	1	0	0
NUP210L	91181	broad.mit.edu	37	1	154112300	154112300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:154112300C>T	uc001fdw.2	-	5	767	c.695G>A	c.(694-696)CGA>CAA	p.R232Q	NUP210L_uc010peh.1_Missense_Mutation_p.R232Q	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	232						integral to membrane		p.R232*(1)		skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			TTCATGAATTCGAACTTTTAC	0.368000													199	289					0	0	1	0	0
ADAR	103	broad.mit.edu	37	1	154558739	154558739	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:154558739G>A	uc001ffh.2	-	12	3320	c.3120C>T	c.(3118-3120)ATC>ATT	p.I1040I	ADAR_uc001ffj.2_Silent_p.I995I|ADAR_uc001ffi.2_Silent_p.I1014I|ADAR_uc001ffk.2_Silent_p.I745I	NM_001111	NP_001102	P55265	DSRAD_HUMAN	adenosine deaminase, RNA-specific isoform a	1040	A to I editase.				adenosine to inosine editing|gene silencing by RNA|mRNA modification|mRNA processing|type I interferon-mediated signaling pathway	cytoplasm|nucleolus|nucleoplasm	DNA binding|double-stranded RNA adenosine deaminase activity|metal ion binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.0997)		LUSC - Lung squamous cell carcinoma(543;0.185)	Colorectal(1306;0.115)		TCCAGCGTAGGATTTTGTCAC	0.552000													81	87					0	0	1	0	0
SEMA4A	64218	broad.mit.edu	37	1	156146255	156146255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:156146255G>A	uc001fnl.2	+	15	1857	c.1753G>A	c.(1753-1755)GCC>ACC	p.A585T	SEMA4A_uc009wrq.2_Missense_Mutation_p.A585T|SEMA4A_uc001fnm.2_Missense_Mutation_p.A585T|SEMA4A_uc001fnn.2_Missense_Mutation_p.A453T|SEMA4A_uc001fno.2_Missense_Mutation_p.A585T	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	585	Extracellular (Potential).|Ig-like C2-type.				axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					CCACCTGTCAGCCTTGGCCTC	0.532000													39	48					0	0	1	0	0
BCAN	63827	broad.mit.edu	37	1	156626809	156626809	+	Silent	SNP	G	A	A	rs151238031		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:156626809G>A	uc001fpp.2	+	10	2466	c.2130G>A	c.(2128-2130)GAG>GAA	p.E710E		NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	710	C-type lectin.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GGAGCTGGGAGGAGGCAGAGA	0.652000													3	119					0	0	1	0	0
PEAR1	375033	broad.mit.edu	37	1	156874633	156874633	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:156874633C>T	uc001fqj.1	+	3	311	c.195C>T	c.(193-195)TGC>TGT	p.C65C	PEAR1_uc009wsl.1_5'Flank|PEAR1_uc001fqk.1_5'Flank	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	65	EMI.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCCATACTTGCCCCCAGCCCA	0.657000													36	41					0	0	1	0	0
CD1D	912	broad.mit.edu	37	1	158151329	158151329	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:158151329G>A	uc001frr.2	+	3	645	c.146G>A	c.(145-147)TGG>TAG	p.W49*	CD1D_uc009wsr.1_Nonsense_Mutation_p.W49*|CD1D_uc009wss.2_Nonsense_Mutation_p.W49*|CD1D_uc009wst.1_5'UTR	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	49	Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					GGCTTGGCGTGGCTGGGGGAG	0.642000													155	193					0	0	1	0	0
OR10K1	391109	broad.mit.edu	37	1	158436035	158436035	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:158436035C>T	uc010pij.1	+	1	684	c.684C>T	c.(682-684)ATC>ATT	p.I228I		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TTCTAAAAATCCCTTCCTCCG	0.458000													54	75					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158592936	158592936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:158592936G>A	uc001fst.1	-	43	6156	c.5957C>T	c.(5956-5958)CCC>CTC	p.P1986L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1986	Spectrin 19.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AGTGATCTCGGGAAGTCTCTC	0.502000													280	411					0	0	1	0	0
FCER1A	2205	broad.mit.edu	37	1	159277647	159277647	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:159277647C>T	uc001ftq.2	+	6	798	c.699C>T	c.(697-699)CTC>CTT	p.L233L		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	233	Cytoplasmic (Potential).					integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	TCACATTTCTCTTGAAGATTA	0.388000													35	69					0	0	1	0	0
CRP	1401	broad.mit.edu	37	1	159683778	159683778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:159683778G>A	uc001ftw.2	-	2	316	c.212C>T	c.(211-213)TCG>TTG	p.S71L	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_5'Flank	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	71	Pentaxin.			YSIFSYATKRQDNEIL -> TVFSRMPPRDKTMRFF (in Ref. 4; CAA39671).	acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	GGTGGCATACGAGAAAATACT	0.448000													56	70					0	0	1	0	0
CASQ1	844	broad.mit.edu	37	1	160160769	160160769	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:160160769G>A	uc010pja.1	+	1	485	c.228G>A	c.(226-228)GAG>GAA	p.E76E		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	76						mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			AACCCCCCGAGGATGACAAGG	0.527000													43	49					0	0	1	0	0
VANGL2	57216	broad.mit.edu	37	1	160389128	160389128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:160389128C>T	uc001fwb.1	+	5	828	c.529C>T	c.(529-531)CGC>TGC	p.R177C	VANGL2_uc001fwc.1_Missense_Mutation_p.R177C	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	177	Cytoplasmic (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CTCGCTGCCCCGCGTCTTTGT	0.627000													82	93					0	0	1	0	0
ATF6	22926	broad.mit.edu	37	1	161928361	161928361	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:161928361C>T	uc001gbr.2	+	16	1997	c.1930C>T	c.(1930-1932)CAA>TAA	p.Q644*	ATF6_uc001gbs.2_RNA	NM_007348	NP_031374	P18850	ATF6A_HUMAN	activating transcription factor 6	644	Lumenal (Potential).				positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response|protein folding	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|skin(1)	3	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.00953)			GCAGAGGAATCAAACCAACAC	0.517000													91	132					0	0	1	0	0
OLFML2B	25903	broad.mit.edu	37	1	161969922	161969922	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:161969922C>T	uc001gbu.2	-	5	1354	c.930G>A	c.(928-930)GAG>GAA	p.E310E	OLFML2B_uc010pkq.1_Silent_p.E311E	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	310										skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			CAATGTCATTCTCTTCTTCAG	0.602000													64	98					0	0	1	0	0
PBX1	5087	broad.mit.edu	37	1	164761879	164761879	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:164761879G>A	uc001gct.2	+	3	672	c.414G>A	c.(412-414)GGG>GGA	p.G138G	PBX1_uc010pku.1_Silent_p.G138G|PBX1_uc010pkv.1_Silent_p.G55G|PBX1_uc001gcs.2_Silent_p.G138G|PBX1_uc010pkw.1_Silent_p.G28G	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	138					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						cTTCTGGAGGGGCAGGTTCAG	0.463000			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								37	52					0	0	1	0	0
TIPRL	261726	broad.mit.edu	37	1	168160618	168160618	+	Silent	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:168160618A>C	uc001gfg.2	+	4	541	c.396A>C	c.(394-396)ACA>ACC	p.T132T	TIPRL_uc001gfh.2_Silent_p.T132T|TIPRL_uc001gff.2_Silent_p.T132T	NM_152902	NP_690866	O75663	TIPRL_HUMAN	TIP41, TOR signalling pathway regulator-like	132					DNA damage checkpoint|negative regulation of protein phosphatase type 2A activity	cytoplasm	protein binding			ovary(1)	1	all_hematologic(923;0.215)					TTGTACCTACAACAGATCATA	0.323000													48	61					0	0	1	0	0
FMO1	2326	broad.mit.edu	37	1	171244613	171244613	+	Silent	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:171244613T>A	uc009wvz.2	+	4	586	c.450T>A	c.(448-450)CTT>CTA	p.L150L	FMO1_uc010pme.1_Silent_p.L87L|FMO1_uc001ghl.2_Silent_p.L150L|FMO1_uc001ghm.2_Silent_p.L150L|FMO1_uc001ghn.2_Silent_p.L150L	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	150					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CTGGCTTTCTTACTAATCCTT	0.448000													86	115					0	0	1	0	0
FMO4	2329	broad.mit.edu	37	1	171293297	171293297	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:171293297G>A	uc001gho.2	+	5	559	c.342G>A	c.(340-342)ACG>ACA	p.T114T		NM_002022	NP_002013	P31512	FMO4_HUMAN	flavin containing monooxygenase 4	114					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			kidney(2)|skin(1)	3	all_cancers(6;3.9e-08)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					GCAGCATAACGAAGCGTCCAG	0.468000													147	203					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175049375	175049375	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:175049375G>A	uc001gkl.1	+	4	974	c.861G>A	c.(859-861)CAG>CAA	p.Q287Q	TNN_uc010pmx.1_Silent_p.Q287Q	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	287	Fibronectin type-III 1.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CCTCCAGCCAGGTGGATCACT	0.592000													31	60					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176564602	176564602	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:176564602G>A	uc001gkz.2	+	3	3026	c.1862G>A	c.(1861-1863)TGG>TAG	p.W621*	PAPPA2_uc001gky.1_Nonsense_Mutation_p.W621*|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	621	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGCTACTCCTGGAACCGCAGG	0.602000													35	64					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176564612	176564612	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:176564612G>A	uc001gkz.2	+	3	3036	c.1872G>A	c.(1870-1872)AGG>AGA	p.R624R	PAPPA2_uc001gky.1_Silent_p.R624R|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	624	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGAACCGCAGGGATGGGCTCT	0.597000													36	62					0	0	1	0	0
ABL2	27	broad.mit.edu	37	1	179077360	179077360	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:179077360G>A	uc001gmj.3	-	12	3329	c.3042C>T	c.(3040-3042)TCC>TCT	p.S1014S	ABL2_uc010pnf.1_Silent_p.S911S|ABL2_uc010png.1_Silent_p.S890S|ABL2_uc010pnh.1_Silent_p.S993S|ABL2_uc001gmg.3_Silent_p.S896S|ABL2_uc001gmi.3_Silent_p.S999S|ABL2_uc001gmh.3_Silent_p.S978S|ABL2_uc010pne.1_Silent_p.S875S	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	1014	Pro-rich.				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	TTTCTGATGTGGACTGTCCTG	0.582000			T	ETV6	AML								77	106					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179564869	179564869	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:179564869G>A	uc001gnf.1	+	4	997	c.747G>A	c.(745-747)CCG>CCA	p.P249P	TDRD5_uc010pnp.1_Silent_p.P249P	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	249					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						TGGAACCACCGAAGCAAATAA	0.398000													63	89					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181690986	181690986	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:181690986C>T	uc001gow.2	+	16	2214	c.2049C>T	c.(2047-2049)TTC>TTT	p.F683F	CACNA1E_uc009wxs.2_Silent_p.F590F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	683	Helical; Name=S6 of repeat II.|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCATCTACTTCATTGTGCTCA	0.522000													104	185					0	0	1	0	0
RGS16	6004	broad.mit.edu	37	1	182569515	182569515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:182569515G>A	uc001gpl.3	-	5	675	c.521C>T	c.(520-522)TCG>TTG	p.S174L		NM_002928	NP_002919	O15492	RGS16_HUMAN	regulator of G-protein signalling 16	174	RGS.				negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity			ovary(1)	1						GTAAGCAGGCGACTTCAGGAA	0.617000													94	89					0	0	1	0	0
DHX9	1660	broad.mit.edu	37	1	182845607	182845607	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:182845607C>T	uc001gpr.2	+	18	2218	c.2055C>T	c.(2053-2055)CCC>CCT	p.P685P	DHX9_uc001gps.2_Silent_p.P471P|DHX9_uc001gpt.2_5'Flank	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	685	Helicase C-terminal.				CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						AGATTCTACCCCTGCATTCTC	0.393000													30	79					0	0	1	0	0
C1orf25	81627	broad.mit.edu	37	1	185109117	185109117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:185109117G>A	uc001grf.3	-	8	1369	c.1097C>T	c.(1096-1098)TCT>TTT	p.S366F	C1orf25_uc010pon.1_Missense_Mutation_p.S210F	NM_030934	NP_112196	Q7Z2T5	TRM1L_HUMAN	N2,N2-dimethylguanosine tRNA	366						intracellular	RNA binding|tRNA (guanine-N2-)-methyltransferase activity|zinc ion binding				0						GAAATCAAAAGATCTCAAATG	0.333000													33	76					0	0	1	0	0
CFH	3075	broad.mit.edu	37	1	196642283	196642283	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:196642283G>A	uc001gtj.3	+	2	474	c.234G>A	c.(232-234)AGG>AGA	p.R78R	CFH_uc001gti.3_Silent_p.R78R|CFH_uc009wyw.2_Silent_p.R78R|CFH_uc009wyx.2_Silent_p.R78R	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	78	Sushi 1.		R -> G (in AHUS1).		complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						ATCCATTAAGGAAATGTCAGA	0.333000													112	79					0	0	1	0	0
ASPM	259266	broad.mit.edu	37	1	197098447	197098447	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:197098447C>A	uc001gtu.2	-	9	2887	c.2630G>T	c.(2629-2631)GGT>GTT	p.G877V	ASPM_uc001gtv.2_Missense_Mutation_p.G877V|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	877					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TTCTTCATGACCTTAAATAAA	0.279000													62	45					5.02462e-34	5.07618e-34	1	1	0
CRB1	23418	broad.mit.edu	37	1	197446994	197446994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:197446994G>A	uc001gtz.2	+	12	4341	c.4206G>A	c.(4204-4206)ATG>ATA	p.M1402I	CRB1_uc010poz.1_Missense_Mutation_p.M1378I|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.M1290I|CRB1_uc010ppb.1_Missense_Mutation_p.M866I|CRB1_uc010ppd.1_Missense_Mutation_p.M883I	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1402	Cytoplasmic (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CCCCTGCAATGGAGAGACTGA	0.522000													45	175					0	0	1	0	0
C1orf106	55765	broad.mit.edu	37	1	200880679	200880679	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:200880679T>C	uc001gvo.2	+	9	1343	c.1313T>C	c.(1312-1314)TTT>TCT	p.F438S	C1orf106_uc010ppm.1_Missense_Mutation_p.F353S	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	438										skin(2)|ovary(1)	3						GATTCCTGCTTTCCCGCGACC	0.687000													354	240					0	0	1	0	0
TNNT2	7139	broad.mit.edu	37	1	201331115	201331115	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:201331115C>T	uc001gwf.2	-	13	705	c.636G>A	c.(634-636)CGG>CGA	p.R212R	TNNT2_uc009wzn.2_5'Flank|TNNT2_uc009wzo.2_5'Flank|TNNT2_uc009wzp.2_RNA|TNNT2_uc001gwg.2_Silent_p.R202R|TNNT2_uc001gwh.2_Silent_p.R199R|TNNT2_uc001gwi.2_Silent_p.R172R|TNNT2_uc009wzr.2_Silent_p.R143R	NM_000364	NP_000355	P45379	TNNT2_HUMAN	troponin T type 2, cardiac isoform 1	215			R -> L (in CMD1D).		ATP catabolic process|muscle filament sliding|negative regulation of ATPase activity|positive regulation of ATPase activity|regulation of heart contraction|response to calcium ion|response to calcium ion|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin binding|tropomyosin binding|troponin C binding|troponin I binding				0						TCTTCTTTTCCCGCTCAGTCT	0.577000											OREG0014076	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	181	194					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204913473	204913473	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:204913473C>T	uc001hbj.2	+	3	358	c.30C>T	c.(28-30)GTC>GTT	p.V10V	NFASC_uc001hbh.2_Silent_p.V10V|NFASC_uc010pqz.1_Silent_p.V10V|NFASC_uc010pra.1_Silent_p.V10V|NFASC_uc001hbi.2_Silent_p.V10V|NFASC_uc009xbg.1_Silent_p.V83V|NFASC_uc010prb.1_Silent_p.V10V|NFASC_uc010prc.1_5'UTR	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	10					axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CGCCCTGGGTCCATGCAGCCT	0.607000													42	18					0	0	1	0	0
AVPR1B	553	broad.mit.edu	37	1	206225374	206225374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:206225374G>A	uc001hds.2	+	1	1092	c.934G>A	c.(934-936)GAT>AAT	p.D312N		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	312	Extracellular (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	GAATGCCCCTGATGAAGGCAA	0.562000													72	133					0	0	1	0	0
MAPKAPK2	9261	broad.mit.edu	37	1	206904533	206904533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:206904533C>T	uc001hem.1	+	7	1104	c.818C>T	c.(817-819)CCG>CTG	p.P273L	MAPKAPK2_uc001hel.1_Missense_Mutation_p.P273L	NM_032960	NP_116584	P49137	MAPK2_HUMAN	mitogen-activated protein kinase-activated	273	Protein kinase.				activation of MAPK activity|hormone biosynthetic process|innate immune response|leukotriene biosynthetic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|prostanoid metabolic process|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.211)			GCCATCTCTCCGGGCATGAAG	0.527000													95	226					0	0	1	0	0
SYT14	255928	broad.mit.edu	37	1	210334237	210334237	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:210334237T>A	uc009xcv.2	+	8	1590	c.1518T>A	c.(1516-1518)TAT>TAA	p.Y506*	SYT14_uc001hhs.3_Nonsense_Mutation_p.Y570*|SYT14_uc001hht.3_Nonsense_Mutation_p.Y525*|SYT14_uc001hhu.3_RNA|SYT14_uc010psn.1_Nonsense_Mutation_p.Y551*|SYT14_uc010pso.1_Nonsense_Mutation_p.Y468*|SYT14_uc010psp.1_Nonsense_Mutation_p.Y44*	NM_153262	NP_694994	Q8NB59	SYT14_HUMAN	synaptotagmin XIV isoform 4	506	Cytoplasmic (Potential).|C2 2.					integral to membrane				ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.085)		TGTCTGTGTATAACAAACGCA	0.418000													76	197					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	211280701	211280701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:211280701C>T	uc001hib.2	-	2	268	c.98G>A	c.(97-99)GGG>GAG	p.G33E	KCNH1_uc001hic.2_Missense_Mutation_p.G33E	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	33	Cytoplasmic (Potential).|PAS.				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		CTGAGCATTCCCCAACACAAA	0.393000													77	75					0	0	1	0	0
PROX1	5629	broad.mit.edu	37	1	214171380	214171380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:214171380C>T	uc001hkh.2	+	2	1774	c.1502C>T	c.(1501-1503)TCC>TTC	p.S501F	PROX1_uc001hkg.1_Missense_Mutation_p.S501F	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	501					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		GGTGCTCCCTCCGGCTCCTTC	0.562000													121	70					0	0	1	0	0
PTPN14	5784	broad.mit.edu	37	1	214625207	214625207	+	Silent	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:214625207A>C	uc001hkk.1	-	3	556	c.285T>G	c.(283-285)CTT>CTG	p.L95L	PTPN14_uc010pty.1_5'UTR	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	95	FERM.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		CTCCAAAGAAAAGCAAAGGCT	0.478000													88	46					0	0	1	0	0
LYPLAL1	127018	broad.mit.edu	37	1	219385019	219385019	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:219385019G>A	uc001hlq.3	+	5	704	c.663G>A	c.(661-663)TTG>TTA	p.L221L	LYPLAL1_uc001hlr.3_Silent_p.L205L|LYPLAL1_uc001hls.3_Silent_p.L97L|LYPLAL1_uc001hlt.3_Silent_p.L97L|LYPLAL1_uc009xds.2_Silent_p.L170L	NM_138794	NP_620149	Q5VWZ2	LYPL1_HUMAN	lysophospholipase-like 1	221						cytoplasm	lysophospholipase activity				0				GBM - Glioblastoma multiforme(131;0.055)|all cancers(67;0.105)|OV - Ovarian serous cystadenocarcinoma(81;0.116)		TAGACATATTGAAGTTATGGA	0.328000													64	116					0	0	1	0	0
SLC30A10	55532	broad.mit.edu	37	1	220089189	220089189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:220089189G>A	uc001hlw.2	-	4	1271	c.1060C>T	c.(1060-1062)CCT>TCT	p.P354S	SLC30A10_uc001hlu.1_Intron|SLC30A10_uc001hlv.2_Missense_Mutation_p.P109S|SLC30A10_uc001hlx.2_Missense_Mutation_p.P129S	NM_018713	NP_061183	Q6XR72	ZNT10_HUMAN	solute carrier family 30 (zinc transporter),	354	Cytoplasmic (Potential).				zinc ion transport	integral to membrane|plasma membrane	cation transmembrane transporter activity				0				GBM - Glioblastoma multiforme(131;0.051)|all cancers(67;0.209)		CTGTCCTTAGGATACTTGATG	0.443000													177	115					0	0	1	0	0
MARK1	4139	broad.mit.edu	37	1	220804420	220804420	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:220804420A>C	uc001hmn.3	+	10	1550	c.953A>C	c.(952-954)GAA>GCA	p.E318A	MARK1_uc009xdw.2_Missense_Mutation_p.E318A|MARK1_uc010pun.1_Missense_Mutation_p.E318A|MARK1_uc001hmm.3_Missense_Mutation_p.E296A	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	318					intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		CATGAAGAGGAAGAACTAAAG	0.363000													56	110					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228479832	228479832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:228479832G>A	uc009xez.1	+	39	10617	c.10573G>A	c.(10573-10575)GAG>AAG	p.E3525K	OBSCN_uc001hsn.2_Missense_Mutation_p.E3525K|OBSCN_uc001hsq.1_Missense_Mutation_p.E781K	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3525	Ig-like 35.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GTGCGGGCAGGAGAGGACCTC	0.592000													146	125					0	0	1	0	0
ACTA1	58	broad.mit.edu	37	1	229568468	229568468	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:229568468G>A	uc001htm.2	-	3	394	c.289C>T	c.(289-291)CGC>TGC	p.R97C		NM_001100	NP_001091	P68133	ACTS_HUMAN	actin, alpha 1, skeletal muscle	97					muscle filament sliding|skeletal muscle fiber development|skeletal muscle thin filament assembly	actin filament|cytosol|stress fiber|striated muscle thin filament	ADP binding|ATP binding|myosin binding|structural constituent of cytoskeleton				0	Breast(184;0.0858)|Ovarian(103;0.103)	Prostate(94;0.167)			Dornase Alfa(DB00003)	GGAGCCACGCGAAGCTCGTTG	0.572000													113	241					0	0	1	0	0
SLC35F3	148641	broad.mit.edu	37	1	234367230	234367230	+	Silent	SNP	C	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:234367230C>A	uc001hwa.1	+	2	372	c.144C>A	c.(142-144)GGC>GGA	p.G48G	SLC35F3_uc001hvy.1_Silent_p.G117G	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	48					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			TGGAGGCCGGCGGGAGAGCGA	0.746000													51	85					8.28887e-21	8.35833e-21	1	1	0
NID1	4811	broad.mit.edu	37	1	236157083	236157083	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:236157083G>A	uc001hxo.2	-	13	2719	c.2617C>T	c.(2617-2619)CTG>TTG	p.L873L	NID1_uc009xgd.2_Silent_p.L740L|NID1_uc009xgc.2_5'UTR	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	873	Thyroglobulin type-1.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	GGAACGAACAGCCCCGGAGGA	0.662000													56	42					0	0	1	0	0
PLD5	200150	broad.mit.edu	37	1	242271106	242271106	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:242271106T>C	uc001hzn.1	-	8	1233	c.1106A>G	c.(1105-1107)GAA>GGA	p.E369G	PLD5_uc001hzl.3_Missense_Mutation_p.E307G|PLD5_uc001hzm.3_Missense_Mutation_p.E159G|PLD5_uc001hzo.1_Missense_Mutation_p.E277G			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	369						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			AACTAATGCTTCTCTTATTTT	0.343000													59	118					0	0	1	0	0
KIF26B	55083	broad.mit.edu	37	1	245849093	245849093	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:245849093C>T	uc001ibf.1	+	12	3248	c.2808C>T	c.(2806-2808)ATC>ATT	p.I936I	KIF26B_uc001ibg.1_Silent_p.I554I|KIF26B_uc001ibh.1_Silent_p.I178I	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	936					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			TGGACTGCATCGACGGCAGCG	0.637000													36	43					0	0	1	0	0
OR14A16	284532	broad.mit.edu	37	1	247978607	247978607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:247978607C>T	uc001idm.1	-	1	425	c.425G>A	c.(424-426)AGA>AAA	p.R142K		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	142	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CACAGTGGCTCTTTGGACACA	0.522000													217	150					0	0	1	0	0
OR2T8	343172	broad.mit.edu	37	1	248084811	248084811	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:248084811C>T	uc010pzc.1	+	1	492	c.492C>T	c.(490-492)TTC>TTT	p.F164F		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	164	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CCCTGAGCTTCCCATATTGCG	0.577000													14	29					0	0	1	0	0
OR2T5	401993	broad.mit.edu	37	1	248652000	248652000	+	Silent	SNP	G	A	A	rs143666885		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:248652000G>A	uc001iem.1	+	1	111	c.111G>A	c.(109-111)GTG>GTA	p.V37V		NM_001004697	NP_001004697	Q6IEZ7	OR2T5_HUMAN	olfactory receptor, family 2, subfamily T,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCATCTTTGTGGTTTTCCTGA	0.478000													84	211					0	0	1	0	0
OR2T11	127077	broad.mit.edu	37	1	248790085	248790085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:248790085C>T	uc001ier.1	-	1	345	c.345G>A	c.(343-345)ATG>ATA	p.M115I		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGTCATAGGCCATGAGGCCCA	0.512000													37	90					0	0	1	0	0
CALML5	51806	broad.mit.edu	37	10	5541194	5541194	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:5541194G>A	uc001iic.2	-	1	340	c.208C>T	c.(208-210)CTG>TTG	p.L70L		NM_017422	NP_059118	Q9NZT1	CALL5_HUMAN	calmodulin-like 5	70	EF-hand 2.				epidermis development|signal transduction		calcium ion binding|protein binding				0						GCCGCCGTCAGGAACTCCTGG	0.652000													31	31					0	0	1	0	0
OLAH	55301	broad.mit.edu	37	10	15115180	15115180	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:15115180G>A	uc001inu.2	+	8	1004	c.750G>A	c.(748-750)AAG>AAA	p.K250K	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Silent_p.K303K	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	250					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						AATTAATCAAGAACTACATAA	0.338000													24	29					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21129779	21129779	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:21129779C>T	uc001iqi.2	-	13	1625	c.1228_splice	c.e13-1	p.K410_splice	NEBL_uc001iqj.2_Splice_Site|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_Splice_Site	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform						regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TATATTCTTTCTATGAGACAA	0.318000													14	12					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21141554	21141554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:21141554C>T	uc001iqi.2	-	10	1325	c.928G>A	c.(928-930)GAA>AAA	p.E310K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	310	Nebulin 8.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CCTTTGTTTTCCTCAAAGAGC	0.383000													18	29					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21169800	21169800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:21169800C>T	uc001iqi.2	-	5	800	c.403G>A	c.(403-405)GGA>AGA	p.G135R	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	135	Nebulin 3.			KHDAAKGFSD -> NMMLPRILS (in Ref. 2; AAF24858).	regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TCTGAGAATCCTTTGGCAGCA	0.413000													52	69					0	0	1	0	0
APBB1IP	54518	broad.mit.edu	37	10	26802584	26802584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:26802584C>T	uc001iss.2	+	8	1129	c.808C>T	c.(808-810)CCC>TCC	p.P270S	APBB1IP_uc009xks.1_Missense_Mutation_p.P270S	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	270					blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						ATTTAAAAACCCCCAGGTAAG	0.348000													42	83					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28233311	28233311	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:28233311C>T	uc009xky.2	-	12	1681	c.1583G>A	c.(1582-1584)AGA>AAA	p.R528K	ARMC4_uc010qds.1_Missense_Mutation_p.R53K|ARMC4_uc010qdt.1_Missense_Mutation_p.R220K|ARMC4_uc001itz.2_Missense_Mutation_p.R528K|ARMC4_uc010qdu.1_Missense_Mutation_p.R220K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	528	ARM 2.						binding			ovary(4)|skin(2)	6						AATATTCTGTCTGATTTGAGG	0.378000													40	65					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30316574	30316574	+	Silent	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:30316574A>G	uc001iux.2	-	2	2562	c.2503T>C	c.(2503-2505)TTA>CTA	p.L835L	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Silent_p.L697L|KIAA1462_uc009xle.1_Silent_p.L835L	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	835										ovary(4)	4						AAACTTTCTAACTGACTGATC	0.448000													75	108					0	0	1	0	0
ZNF438	220929	broad.mit.edu	37	10	31139282	31139282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:31139282G>A	uc010qdz.1	-	7	487	c.52C>T	c.(52-54)CCT>TCT	p.P18S	ZNF438_uc001ivn.2_5'UTR|ZNF438_uc010qdy.1_Missense_Mutation_p.P8S|ZNF438_uc001ivo.3_5'UTR|ZNF438_uc009xlg.2_Missense_Mutation_p.P18S|ZNF438_uc001ivp.3_Missense_Mutation_p.P8S|ZNF438_uc010qea.1_Missense_Mutation_p.P18S|ZNF438_uc010qeb.1_Missense_Mutation_p.P18S|ZNF438_uc010qec.1_5'UTR	NM_182755	NP_877432	Q7Z4V0	ZN438_HUMAN	zinc finger protein 438 isoform a	18					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2		Prostate(175;0.0587)				GTTCCAGAAGGGATGTTTGAT	0.368000													44	42					0	0	1	0	0
ZNF33A	7581	broad.mit.edu	37	10	38343365	38343365	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:38343365G>A	uc001izh.2	+	5	488	c.310G>A	c.(310-312)GAA>AAA	p.E104K	ZNF33A_uc001izg.2_Missense_Mutation_p.E105K|ZNF33A_uc010qev.1_Missense_Mutation_p.E111K|ZNF33A_uc001izi.1_Missense_Mutation_p.E105K	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	104						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						ACATTTGTGGGAAGTTGTATT	0.348000													56	63					0	0	1	0	0
OR13A1	79290	broad.mit.edu	37	10	45799764	45799764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:45799764G>A	uc001jcc.1	-	4	416	c.107C>T	c.(106-108)TCG>TTG	p.S36L	OR13A1_uc001jcd.1_Missense_Mutation_p.S32L	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	36	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGGTGCTCCGAAAAGCCCTG	0.532000													46	11					0	0	1	0	0
SYT15	83849	broad.mit.edu	37	10	46969249	46969249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:46969249C>T	uc001jea.2	-	2	365	c.212G>A	c.(211-213)AGG>AAG	p.R71K	SYT15_uc001jdz.2_Missense_Mutation_p.R71K|SYT15_uc001jeb.2_Intron|SYT15_uc010qfp.1_5'Flank	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	71	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						CCTGCCTCACCTGCTCAGTTG	0.612000													20	56					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	48968566	48968566	+	RNA	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:48968566A>G	uc001jgc.1	+	3		c.1234A>G								full-length cDNA clone CS0DI009YC01 of Placenta Cot 25-normalized of Homo sapiens (human).																		ACAGGATAACAAACTGGAAAA	0.284000													4	10					0	0	1	0	0
LRRC18	474354	broad.mit.edu	37	10	50121763	50121763	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:50121763G>A	uc001jhd.2	-	1	518	c.438C>T	c.(436-438)CTC>CTT	p.L146L	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Silent_p.L146L	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	146	LRR 6.					cytoplasm				ovary(1)|pancreas(1)	2						CTACCTCGTGGAGCTCCTTCA	0.567000													33	7					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61834906	61834907	+	Missense_Mutation	DNP	GT	AG	AG			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:61834906_61834907GT>AG	uc001jky.2	-	37	5924_5925	c.5732_5733AC>CT	c.(5731-5733)GAC>GCT	p.D1911A	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1911					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TCCGCATTAGGTCCTCTTTCAT	0.441000													9	9					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61834949	61834949	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:61834949G>T	uc001jky.2	-	37	5882	c.5690C>A	c.(5689-5691)TCC>TAC	p.S1897Y	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1897	Ser-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CTCCTGACTGGAAGATAAAGA	0.448000													26	14					3.90053e-15	3.92955e-15	1	1	0
HKDC1	80201	broad.mit.edu	37	10	71010324	71010324	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:71010324C>T	uc001jpf.3	+	12	1885	c.1752C>T	c.(1750-1752)TTC>TTT	p.F584F	HKDC1_uc010qje.1_Silent_p.F447F	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	584					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						TCGCCGACTTCCTGGACTACA	0.562000													126	35					0	0	1	0	0
PANK1	53354	broad.mit.edu	37	10	91404737	91404737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:91404737C>T	uc001kgp.1	-	1	479	c.323G>A	c.(322-324)GGA>GAA	p.G108E	PANK1_uc001kgn.1_5'Flank|PANK1_uc001kgo.1_5'Flank|PANK1_uc009xtu.1_5'Flank	NM_148977	NP_683878	Q8TE04	PANK1_HUMAN	pantothenate kinase 1 isoform alpha	108					coenzyme A biosynthetic process|pantothenate metabolic process	cytosol|nucleus	ATP binding|pantothenate kinase activity				0					Bezafibrate(DB01393)	CCCGGATCCTCCCTGCGGCTT	0.736000													18	2					0	0	1	0	0
SLC25A28	81894	broad.mit.edu	37	10	101370912	101370912	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:101370912G>A	uc001kpx.2	-	4	918	c.789C>T	c.(787-789)TCC>TCT	p.S263S	SLC25A28_uc001kpy.2_Silent_p.S76S	NM_031212	NP_112489	Q96A46	MFRN2_HUMAN	solute carrier family 25, member 28	263	Helical; Name=5; (Potential).|Solcar 3.				ion transport|iron ion homeostasis	integral to membrane|mitochondrial inner membrane					0		Colorectal(252;0.234)		Epithelial(162;2.57e-10)|all cancers(201;2.01e-08)		AGAGGACGTGGGAGCTTGGGT	0.552000													35	10					0	0	1	0	0
WNT8B	7479	broad.mit.edu	37	10	102242085	102242085	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:102242085A>C	uc001krb.2	+	6	682	c.568A>C	c.(568-570)ACC>CCC	p.T190P		NM_003393	NP_003384	Q93098	WNT8B_HUMAN	wingless-type MMTV integration site family,	190					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|determination of dorsal identity|endoderm development|eye development|gastrulation|hypothalamus development|negative regulation of anterior neural cell fate commitment of the neural plate by Wnt receptor signaling pathway|otic placode formation|positive regulation of gene expression|response to estradiol stimulus|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			ovary(1)|breast(1)|large_intestine(1)|skin(1)	4		Colorectal(252;0.117)		Epithelial(162;1.87e-10)|all cancers(201;1.64e-08)		TGGCAGCTGCACCACGCAGAC	0.647000											OREG0020440	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	9					0	0	1	0	0
PSD	5662	broad.mit.edu	37	10	104176327	104176327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:104176327C>T	uc001kvg.1	-	2	996	c.469G>A	c.(469-471)GAC>AAC	p.D157N	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Missense_Mutation_p.D157N|PSD_uc001kvi.1_Missense_Mutation_p.D157N|FBXL15_uc001kvj.1_5'Flank	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	157	Pro-rich.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		GGGAGTGGGTCTGATGTGGAT	0.657000													24	7					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106982971	106982971	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:106982971C>T	uc001kyi.1	+	20	3059	c.2832C>T	c.(2830-2832)ACC>ACT	p.T944T	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	944	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		AACTGGGGACCCTTACCTATT	0.458000													142	42					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	107007009	107007009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:107007009C>T	uc001kyi.1	+	22	3252	c.3025C>T	c.(3025-3027)CCT>TCT	p.P1009S	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1009	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		ATCATTCTCTCCTAATCTGGA	0.438000													36	8					0	0	1	0	0
ADD3	120	broad.mit.edu	37	10	111893168	111893168	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:111893168T>C	uc001kyt.3	+	16	2227	c.1913T>C	c.(1912-1914)GTT>GCT	p.V638A	ADD3_uc001kys.3_Missense_Mutation_p.V606A|ADD3_uc001kyu.2_Missense_Mutation_p.V638A|ADD3_uc001kyv.2_Missense_Mutation_p.V638A|ADD3_uc001kyw.2_Missense_Mutation_p.V606A|ADD3_uc001kyx.2_Missense_Mutation_p.V211A	NM_016824	NP_058432	Q9UEY8	ADDG_HUMAN	adducin 3 (gamma) isoform a	638						cytoskeleton	actin binding|calmodulin binding|metal ion binding|structural constituent of cytoskeleton			ovary(2)|skin(2)|large_intestine(1)	5		Breast(234;0.052)|Lung NSC(174;0.223)		Epithelial(162;4.15e-05)|all cancers(201;0.000587)|BRCA - Breast invasive adenocarcinoma(275;0.0742)		ATGCATGATGTTGAAGATGAG	0.423000													114	27					0	0	1	0	0
GFRA1	2674	broad.mit.edu	37	10	117884788	117884788	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:117884788C>T	uc001lcj.2	-	6	1412	c.714G>A	c.(712-714)AGG>AGA	p.R238R	GFRA1_uc001lci.2_Silent_p.R233R|GFRA1_uc009xyr.2_Silent_p.R233R	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	238	2.				axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		TGGGCTTCTCCCTCTCTTCAT	0.547000													46	14					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124348535	124348535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:124348535G>A	uc001lgk.1	+	17	1965	c.1859G>A	c.(1858-1860)CGA>CAA	p.R620Q	DMBT1_uc001lgl.1_Missense_Mutation_p.R610Q|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.R620Q|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	620	SRCR 5.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GTCCTATACCGAGGCTCTTGG	0.592000													265	81					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124390507	124390507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:124390507C>T	uc001lgk.1	+	46	5775	c.5669C>T	c.(5668-5670)TCA>TTA	p.S1890L	DMBT1_uc001lgl.1_Missense_Mutation_p.S1880L|DMBT1_uc001lgm.1_Missense_Mutation_p.S1262L|DMBT1_uc009xzz.1_Missense_Mutation_p.S1890L|DMBT1_uc010qtx.1_Missense_Mutation_p.S610L|DMBT1_uc009yab.1_Missense_Mutation_p.S593L|DMBT1_uc009yac.1_Missense_Mutation_p.S184L	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1890	SRCR 14.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				AATTTAAATTCATCCTATGGT	0.478000													29	13					0	0	1	0	0
PWWP2B	170394	broad.mit.edu	37	10	134219018	134219018	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:134219018C>T	uc001lll.3	+	2	1043	c.1014C>T	c.(1012-1014)CAC>CAT	p.H338H	PWWP2B_uc009ybe.2_Silent_p.H338H	NM_138499	NP_612508	Q6NUJ5	PWP2B_HUMAN	PWWP domain containing 2 isoform 1	338											0		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;7.49e-05)|Epithelial(32;0.00016)|all cancers(32;0.000186)		TGAAGCCCCACCGTCTGGGGG	0.726000													29	13					0	0	1	0	0
C11orf35	256329	broad.mit.edu	37	11	556900	556900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:556900C>T	uc001lpx.2	-	8	974	c.911G>A	c.(910-912)CGG>CAG	p.R304Q	uc001lpy.2_5'Flank|uc001lpz.2_5'Flank	NM_173573	NP_775844	Q8IXW0	CK035_HUMAN	hypothetical protein LOC256329	304										pancreas(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.18e-28)|Epithelial(43;6.93e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.97e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCGGTGGTCCCGGGGCGGGTG	0.687000													6	5					0	0	1	0	0
LOC650368	650368	broad.mit.edu	37	11	3427737	3427737	+	RNA	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:3427737G>A	uc010qxs.1	+	9		c.730G>A			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						AGGGTCGGTGGATCTGGGTGT	0.617000													36	49					0	0	1	0	0
OR51F1	256892	broad.mit.edu	37	11	4790565	4790565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:4790565G>A	uc010qyl.1	-	1	583	c.583C>T	c.(583-585)CGG>TGG	p.R195W		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	195						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		CTATTTGCCCGAATGTCTGAA	0.388000													86	139					0	0	1	0	0
OR51T1	401665	broad.mit.edu	37	11	4903600	4903600	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:4903600C>T	uc010qyp.1	+	1	552	c.552C>T	c.(550-552)TTC>TTT	p.F184F		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGCAGTTTTCTTACTTCCCC	0.468000													88	98					0	0	1	0	0
OR52E2	119678	broad.mit.edu	37	11	5079915	5079915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:5079915C>T	uc010qyw.1	-	1	943	c.943G>A	c.(943-945)GAA>AAA	p.E315K		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	315	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		TCTTCCTTTTCCATTCCTTGT	0.343000													31	53					0	0	1	0	0
OR52A1	23538	broad.mit.edu	37	11	5173108	5173108	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:5173108C>T	uc010qyy.1	-	1	492	c.492G>A	c.(490-492)CTG>CTA	p.L164L		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	164	Extracellular (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGCACTTTATCAGTACTAGGC	0.453000													72	76					0	0	1	0	0
OR51B2	79345	broad.mit.edu	37	11	5345100	5345100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:5345100C>T	uc001mao.1	-	1	483	c.428G>A	c.(427-429)GGA>GAA	p.G143E	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	143	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CACTCCCACTCCTAACGCTAT	0.413000													84	101					0	0	1	0	0
OR51B5	282763	broad.mit.edu	37	11	5364490	5364490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:5364490C>T	uc001map.1	-	1	265	c.265G>A	c.(265-267)GAG>AAG	p.E89K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Missense_Mutation_p.E89K	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTTCCAATCTCCCTGTGATCC	0.557000													32	41					0	0	1	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537107	5537107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:5537107C>T	uc001maz.3	-	1	850	c.565G>A	c.(565-567)GAG>AAG	p.E189K	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	189										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		CACATGAACTCCATGTTGGAC	0.478000													79	94					0	0	1	0	0
OR52B2	255725	broad.mit.edu	37	11	6190746	6190746	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:6190746G>A	uc010qzy.1	-	1	811	c.811C>T	c.(811-813)CCT>TCT	p.P271S		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACATGTTGAGGAATATTACGC	0.463000													30	48					0	0	1	0	0
SCUBE2	57758	broad.mit.edu	37	11	9051556	9051556	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:9051556G>C	uc001mhh.1	-	18	2371	c.2291C>G	c.(2290-2292)ACT>AGT	p.T764S	SCUBE2_uc001mhi.1_Missense_Mutation_p.T736S|SCUBE2_uc001mhj.1_Missense_Mutation_p.T638S	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	764						extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		ACATCGGTGAGTGGTGGTGTT	0.403000													32	50					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17483346	17483346	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:17483346C>T	uc001mnc.2	-	5	732	c.606G>A	c.(604-606)AGG>AGA	p.R202R	ABCC8_uc010rcy.1_Silent_p.R202R	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	202	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GCTTCACCTCCCTCGGTGTCT	0.577000													39	37					0	0	1	0	0
ANO3	63982	broad.mit.edu	37	11	26660710	26660710	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:26660710T>G	uc001mqt.3	+	21	2208	c.2063T>G	c.(2062-2064)TTG>TGG	p.L688W	ANO3_uc010rdr.1_Missense_Mutation_p.L672W|ANO3_uc010rds.1_Missense_Mutation_p.L527W|ANO3_uc010rdt.1_Missense_Mutation_p.L542W	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	688	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGTGGCTGTTTGATAGACCTC	0.408000													78	69					0	0	1	0	0
EHF	26298	broad.mit.edu	37	11	34680128	34680128	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:34680128A>G	uc001mvr.1	+	8	767	c.656A>G	c.(655-657)AAC>AGC	p.N219S	EHF_uc009yke.1_Missense_Mutation_p.N196S|EHF_uc009ykf.1_Missense_Mutation_p.N222S	NM_012153	NP_036285	Q9NZC4	EHF_HUMAN	ets homologous factor	219	ETS.				cell proliferation|epithelial cell differentiation|multicellular organismal development|positive regulation of transcription, DNA-dependent		protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(20;0.117)	Epithelial(1;0.055)|all cancers(1;0.137)|STAD - Stomach adenocarcinoma(6;0.235)			ATCCTCTTGAACCCAGACAAG	0.463000													37	78					0	0	1	0	0
SLC1A2	6506	broad.mit.edu	37	11	35338930	35338930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:35338930C>T	uc001mwd.2	-	2	743	c.151G>A	c.(151-153)GTG>ATG	p.V51M	SLC1A2_uc001mwe.2_Missense_Mutation_p.V42M|SLC1A2_uc010rev.1_Missense_Mutation_p.V51M	NM_004171	NP_004162	P43004	EAA2_HUMAN	excitatory amino acid transporter 2	51	Helical; (Potential).				D-aspartate import|L-glutamate import|synaptic transmission	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|central_nervous_system(1)	3	all_lung(20;0.211)|all_epithelial(35;0.234)	all_hematologic(20;0.109)	STAD - Stomach adenocarcinoma(6;0.00731)		L-Glutamic Acid(DB00142)	CTACCAAACACCGTCAGGGTG	0.622000													25	42					0	0	1	0	0
PAMR1	25891	broad.mit.edu	37	11	35492257	35492257	+	Missense_Mutation	SNP	C	T	T	rs139194536		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:35492257C>T	uc001mwg.2	-	5	647	c.604G>A	c.(604-606)GAG>AAG	p.E202K	PAMR1_uc001mwf.2_Missense_Mutation_p.E202K|PAMR1_uc010rew.1_Intron|PAMR1_uc010rex.1_Missense_Mutation_p.E162K	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	202	CUB.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						GCTGGCCGCTCGTTGCCACAG	0.517000													52	57					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	43283949	43283949	+	RNA	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:43283949C>T	uc001mxe.1	-	2		c.987G>A								Homo sapiens cDNA FLJ44864 fis, clone BRALZ2013621, moderately similar to Heterogeneous nuclear ribonucleoprotein K.																		CTCTGTGGTTCATAAGCCATC	0.443000													18	20					0	0	1	0	0
CRY2	1408	broad.mit.edu	37	11	45869047	45869047	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:45869047G>A	uc010rgn.1	+	1	91	c.69G>A	c.(67-69)GCG>GCA	p.A23A	CRY2_uc009ykw.2_Intron	NM_021117	NP_066940	Q49AN0	CRY2_HUMAN	cryptochrome 2 (photolyase-like) isoform 1	2					DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	blue light photoreceptor activity|damaged DNA binding|DNA photolyase activity|nucleotide binding|protein binding|single-stranded DNA binding			central_nervous_system(1)	1						CAGTCATggcggcgactgtgg	0.532000													20	14					0	0	1	0	0
CKAP5	9793	broad.mit.edu	37	11	46784672	46784672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:46784672G>A	uc001ndi.1	-	30	3855	c.3745C>T	c.(3745-3747)CTT>TTT	p.L1249F	CKAP5_uc009ylg.1_Missense_Mutation_p.L1135F|CKAP5_uc001ndj.1_Missense_Mutation_p.L1249F|CKAP5_uc001ndh.1_Missense_Mutation_p.L178F|SNORD67_uc001ndk.2_5'Flank	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	1249					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						CTCAGGGTAAGCCACTTTAAG	0.348000													105	144					0	0	1	0	0
OR4C15	81309	broad.mit.edu	37	11	55322305	55322305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:55322305C>T	uc010rig.1	+	1	523	c.523C>T	c.(523-525)CGT>TGT	p.R175C		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGCCTATGATCGTTATGTGGC	0.507000										HNSCC(20;0.049)			72	112					0	0	1	0	0
OR4C16	219428	broad.mit.edu	37	11	55340395	55340395	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:55340395C>T	uc010rih.1	+	1	792	c.792C>T	c.(790-792)CCC>CCT	p.P264P		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				CCGTATTCCCCATGGATAAGA	0.398000													48	70					0	0	1	0	0
OR4C6	219432	broad.mit.edu	37	11	55433107	55433107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:55433107G>A	uc001nht.3	+	3	730	c.465G>A	c.(463-465)ATG>ATA	p.M155I	OR4C6_uc010rik.1_Missense_Mutation_p.M155I	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TGCACGCAATGATACAACTTC	0.468000													96	112					0	0	1	0	0
OR5D18	219438	broad.mit.edu	37	11	55587126	55587126	+	Silent	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:55587126T>C	uc010rin.1	+	1	21	c.21T>C	c.(19-21)AAT>AAC	p.N7N		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				CTGATAGAAATACAAGTGGGA	0.428000													27	41					0	0	1	0	0
OR8H2	390151	broad.mit.edu	37	11	55872723	55872723	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:55872723T>A	uc010riy.1	+	1	205	c.205T>A	c.(205-207)TTT>ATT	p.F69I		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					TCACCTGTCATTTATTGACCT	0.428000										HNSCC(53;0.14)			110	281					0	0	1	0	0
OR8H3	390152	broad.mit.edu	37	11	55889910	55889910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:55889910C>T	uc001nii.1	+	1	62	c.62C>T	c.(61-63)TCT>TTT	p.S21F		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					CTGTCAGACTCTGAAGAGGTC	0.443000													120	164					0	0	1	0	0
OR8H3	390152	broad.mit.edu	37	11	55890053	55890053	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:55890053T>A	uc001nii.1	+	1	205	c.205T>A	c.(205-207)TTT>ATT	p.F69I		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					TCACCTGTCATTTATTGACCT	0.438000													66	480					0	0	1	0	0
OR8H3	390152	broad.mit.edu	37	11	55890167	55890167	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:55890167T>A	uc001nii.1	+	1	319	c.319T>A	c.(319-321)TTG>ATG	p.L107M		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					TTTTGTCTTCTTGGGTACTGC	0.443000													250	266					0	0	1	0	0
OR8H1	219469	broad.mit.edu	37	11	56058264	56058264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:56058264G>A	uc010rje.1	-	1	275	c.275C>T	c.(274-276)TCC>TTC	p.S92F		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					GCCCATGAAGGAAATATAGTT	0.398000													157	271					0	0	1	0	0
OR5M3	219482	broad.mit.edu	37	11	56237851	56237851	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:56237851G>A	uc010rjk.1	-	1	123	c.123C>T	c.(121-123)ATC>ATT	p.I41I		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					CCATCATGCCGATATTGCCCA	0.438000													80	110					0	0	1	0	0
OR5B3	441608	broad.mit.edu	37	11	58170229	58170229	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:58170229G>A	uc010rkf.1	-	1	654	c.654C>T	c.(652-654)TTC>TTT	p.F218F		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	218	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TGATAAAAATGAATGTGTAGG	0.398000													28	37					0	0	1	0	0
OR4D9	390199	broad.mit.edu	37	11	59282982	59282982	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:59282982G>T	uc010rkv.1	+	1	597	c.597G>T	c.(595-597)ATG>ATT	p.M199I		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGCTCCTGATGATTTCAAATA	0.468000													113	117					2.73796e-65	2.77382e-65	1	1	0
PPP2R5B	5526	broad.mit.edu	37	11	64699324	64699324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:64699324C>T	uc001oby.2	+	11	1685	c.1100C>T	c.(1099-1101)TCC>TTC	p.S367F	PPP2R5B_uc001obz.2_Missense_Mutation_p.S367F	NM_006244	NP_006235	Q15173	2A5B_HUMAN	beta isoform of regulatory subunit B56, protein	367					signal transduction	cytoplasm|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(2)	2						CGCTGTGTTTCCAGCCCCCAT	0.552000													52	82					0	0	1	0	0
SLC25A45	283130	broad.mit.edu	37	11	65144483	65144483	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:65144483G>A	uc001odp.1	-	5	826	c.404C>T	c.(403-405)GCC>GTC	p.A135V	SLC25A45_uc009yqi.1_Missense_Mutation_p.A73V|SLC25A45_uc001odq.1_Missense_Mutation_p.A111V|SLC25A45_uc001odr.1_Missense_Mutation_p.A135V|SLC25A45_uc001ods.1_Missense_Mutation_p.A93V|SLC25A45_uc001odt.1_Missense_Mutation_p.A93V	NM_001077241	NP_001070709	Q8N413	S2545_HUMAN	solute carrier family 25, member 45 isoform b	135	Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						CCCTGGCTGGGCCCTTGGCTC	0.662000													34	34					0	0	1	0	0
SPTBN2	6712	broad.mit.edu	37	11	66475680	66475680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:66475680C>T	uc001ojd.2	-	11	1354	c.1282G>A	c.(1282-1284)GCC>ACC	p.A428T		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	428	Spectrin 2.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TCGAAGCGGGCGGCCAGCTGC	0.667000													24	47					0	0	1	0	0
PC	5091	broad.mit.edu	37	11	66638663	66638663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:66638663G>A	uc001ojn.1	-	5	542	c.493C>T	c.(493-495)CCC>TCC	p.P165S	PC_uc001ojo.1_Missense_Mutation_p.P165S|PC_uc001ojp.1_Missense_Mutation_p.P165S	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	165	ATP-grasp.|Biotin carboxylation.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	GGGACAACGGGAACACCTGTT	0.632000													66	81					0	0	1	0	0
ACY3	91703	broad.mit.edu	37	11	67410242	67410242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:67410242C>T	uc001omq.2	-	8	1084	c.913G>A	c.(913-915)GTG>ATG	p.V305M		NM_080658	NP_542389	Q96HD9	ACY3_HUMAN	aspartoacylase 3	305					interspecies interaction between organisms	apical plasma membrane|cytoplasm	hydrolase activity, acting on ester bonds|metal ion binding				0					L-Aspartic Acid(DB00128)	ATGGCAGGCACGGTGAATGTG	0.577000													89	113					0	0	1	0	0
FGF19	9965	broad.mit.edu	37	11	69514186	69514186	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:69514186G>A	uc001opf.2	-	3	958	c.495C>T	c.(493-495)TTC>TTT	p.F165F		NM_005117	NP_005108	O95750	FGF19_HUMAN	fibroblast growth factor 19 precursor	165					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of bile acid biosynthetic process|nervous system development|positive regulation of cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import|positive regulation of JNK cascade	extracellular region	fibroblast growth factor receptor binding|growth factor activity			skin(1)	1	all_cancers(3;5.53e-114)|all_epithelial(3;1.34e-121)|Breast(3;9.28e-34)|all_lung(4;1.99e-21)|Lung NSC(4;4.65e-21)|Hepatocellular(3;6.15e-15)|Melanoma(5;1.89e-05)|Ovarian(3;0.0348)		Epithelial(3;3.05e-56)|all cancers(3;2.69e-50)|Lung(3;1.13e-16)|LUSC - Lung squamous cell carcinoma(11;3.74e-15)|STAD - Stomach adenocarcinoma(18;0.0278)|LUAD - Lung adenocarcinoma(13;0.0537)			GCATGGGCAGGAAATGAGAGA	0.587000													66	117					0	0	1	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71276950	71276950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:71276950C>T	uc001oqt.1	+	1	342	c.317C>T	c.(316-318)TCT>TTT	p.S106F		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	106	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						GGCTGTGGTTCTTGTGGGGGC	0.677000													103	116					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92085754	92085754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:92085754C>T	uc001pdj.3	+	1	493	c.476C>T	c.(475-477)TCA>TTA	p.S159L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	159	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCTTTGTTTTCACCCACAACA	0.413000										TCGA Ovarian(4;0.039)			43	55					0	0	1	0	0
MTNR1B	4544	broad.mit.edu	37	11	92715352	92715352	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:92715352G>A	uc001pdk.1	+	2	1066	c.963G>A	c.(961-963)AGG>AGA	p.R321R		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	321	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	AATACAAGAGGATCCTCTTGG	0.532000													136	199					0	0	1	0	0
PGR	5241	broad.mit.edu	37	11	100920673	100920673	+	Silent	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:100920673T>C	uc001pgh.2	-	6	3218	c.2475A>G	c.(2473-2475)TTA>TTG	p.L825L	PGR_uc001pgg.2_Silent_p.L206L|PGR_uc001pgi.2_Silent_p.L723L|PGR_uc009yww.1_Intron|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	825	Steroid-binding.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	TATTAAGAAGTAACAATACTT	0.328000													32	43					0	0	1	0	0
TRPC6	7225	broad.mit.edu	37	11	101374903	101374903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:101374903G>A	uc001pgk.3	-	2	1222	c.797C>T	c.(796-798)TCG>TTG	p.S266L	TRPC6_uc009ywy.2_Missense_Mutation_p.S266L|TRPC6_uc009ywz.1_Missense_Mutation_p.S266L	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	266	Cytoplasmic (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		GTGGCTAAACGAGTCATGCTT	0.468000													116	150					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	102702784	102702784	+	RNA	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:102702784G>A	uc001phh.1	+	6		c.1347G>A								Homo sapiens cDNA FLJ40486 fis, clone TESTI2043866.																		GAAGACAAACGGGAACAAGCC	0.493000													12	23					0	0	1	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106849374	106849374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:106849374C>T	uc001pjg.1	-	3	848	c.458G>A	c.(457-459)GGA>GAA	p.G153E	GUCY1A2_uc010rvo.1_Missense_Mutation_p.G153E|GUCY1A2_uc009yxn.1_Missense_Mutation_p.G153E	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	153					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		CTGAAGAATTCCTGAGACATC	0.363000													29	36					0	0	1	0	0
C11orf87	399947	broad.mit.edu	37	11	109294762	109294762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:109294762C>T	uc001pkn.2	+	2	777	c.403C>T	c.(403-405)CCC>TCC	p.P135S	C11orf87_uc010rwb.1_5'Flank	NM_207645	NP_997528	Q6NUJ2	CK087_HUMAN	hypothetical protein LOC399947 precursor	135	Cytoplasmic (Potential).					integral to membrane				ovary(2)	2						GGAGAGGCAGCCCCGGGACTC	0.716000													64	75					0	0	1	0	0
NCAM1	4684	broad.mit.edu	37	11	113131019	113131020	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:113131019_113131020CC>TT	uc001pns.2	+	2	277_278	c.245_246CC>TT	c.(244-246)ACC>ATT	p.T82I				P13591	NCAM1_HUMAN	SubName: Full=cDNA FLJ52974, highly similar to Neural cell adhesion molecule 1, 140 kDa isoform;	702	Extracellular (Potential).|Fibronectin type-III 2.				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		GTGTTCAGGACCTCGGCCCAGC	0.530000													26	61					0	0	1	0	0
FAM55A	120400	broad.mit.edu	37	11	114401202	114401202	+	Silent	SNP	G	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:114401202G>C	uc001ppa.2	-	3	519	c.102C>G	c.(100-102)GTC>GTG	p.V34V	FAM55A_uc010rxd.1_5'UTR|FAM55A_uc001ppb.1_Silent_p.V176V	NM_152315	NP_689528	Q8N323	FA55A_HUMAN	hypothetical protein LOC120400	176						extracellular region					0		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;3.02e-06)|Epithelial(105;0.000144)|all cancers(92;0.00106)		GAGACAGGGAGACCTGGCCCT	0.537000													32	80					0	0	1	0	0
APOA4	337	broad.mit.edu	37	11	116691697	116691697	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:116691697C>T	uc001pps.1	-	3	1181	c.1077G>A	c.(1075-1077)AAG>AAA	p.K359K		NM_000482	NP_000473			apolipoprotein A-IV precursor												0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.62e-05)|all cancers(92;0.000165)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		TCTCTTTCTCCTTGAAGGTGC	0.468000													33	39					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	121028698	121028698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:121028698C>T	uc010rzo.1	+	13	4454	c.4454C>T	c.(4453-4455)TCC>TTC	p.S1485F		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1485					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		ACCAAGACCTCCTACTGCCTG	0.667000													20	35					0	0	1	0	0
GRAMD1B	57476	broad.mit.edu	37	11	123480592	123480592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:123480592C>T	uc001pyx.2	+	12	1647	c.1318C>T	c.(1318-1320)CCC>TCC	p.P440S	GRAMD1B_uc001pyw.2_Missense_Mutation_p.P447S|GRAMD1B_uc010rzw.1_Missense_Mutation_p.P400S|GRAMD1B_uc010rzx.1_Missense_Mutation_p.P400S|GRAMD1B_uc009zbe.1_Missense_Mutation_p.P436S|GRAMD1B_uc001pyy.2_Missense_Mutation_p.P131S	NM_020716	NP_065767	Q3KR37	GRM1B_HUMAN	GRAM domain containing 1B	440						integral to membrane				ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.32e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0394)		CCCTCTGGCTCCCAAAACTGC	0.502000													7	9					0	0	1	0	0
OR6T1	219874	broad.mit.edu	37	11	123813782	123813782	+	Missense_Mutation	SNP	G	A	A	rs76969055		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:123813782G>A	uc010sab.1	-	1	764	c.764C>T	c.(763-765)TCC>TTC	p.S255F		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		GAGAAAGATGGAACTGCCATA	0.522000													57	91					0	0	1	0	0
OR8G2	26492	broad.mit.edu	37	11	124095618	124095618	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:124095618A>C	uc010saf.1	+	1	221	c.221A>C	c.(220-222)TAT>TCT	p.Y74S		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	74						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		CCCATGTACTATTTCCTCAGT	0.458000													118	166					0	0	1	0	0
OR8D2	283160	broad.mit.edu	37	11	124189425	124189425	+	Silent	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:124189425A>G	uc010sah.1	-	1	669	c.669T>C	c.(667-669)TCT>TCC	p.S223S		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	223	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		CAAGGATACTAGAGAAAATGA	0.438000													59	85					0	0	1	0	0
OR8B2	26595	broad.mit.edu	37	11	124253093	124253093	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:124253093G>A	uc010sai.1	-	1	147	c.147C>T	c.(145-147)TTC>TTT	p.F49F	OR8B2_uc001qab.3_RNA	NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		AATTTAGACCGAAAAGAGTGA	0.423000													81	203					0	0	1	0	0
OR8B4	283162	broad.mit.edu	37	11	124293964	124293964	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:124293964G>A	uc010sak.1	-	1	804	c.804C>T	c.(802-804)AAC>AAT	p.N268N		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		ATCTGCCATGGTTCATAGAGC	0.448000													35	46					0	0	1	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781961	128781961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:128781961G>A	uc001qet.2	+	2	1107	c.793G>A	c.(793-795)GAC>AAC	p.D265N	KCNJ5_uc009zck.2_Missense_Mutation_p.D265N|KCNJ5_uc001qew.2_Missense_Mutation_p.D265N	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	265	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	TGACACGGGCGACGACCGCCT	0.572000													61	80					0	0	1	0	0
ST14	6768	broad.mit.edu	37	11	130069878	130069878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:130069878C>T	uc001qfw.2	+	16	2033	c.1840C>T	c.(1840-1842)CGT>TGT	p.R614C		NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	614	Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	GAGACAGGCTCGTGTTGTTGG	0.612000													94	117					0	0	1	0	0
LOC100288778	100288778	broad.mit.edu	37	12	88651	88651	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:88651A>G	uc010scy.1	+	6	715	c.160A>G	c.(160-162)AGC>GGC	p.S54G	LOC100288778_uc010scz.1_RNA|LOC100288778_uc010sdb.1_RNA|LOC100288778_uc010sdc.1_RNA|LOC100288778_uc010sdd.1_Missense_Mutation_p.S54G|LOC100288778_uc010sde.1_Missense_Mutation_p.S54G|LOC100288778_uc010sdf.1_Missense_Mutation_p.S54G|LOC100288778_uc010sdg.1_Missense_Mutation_p.S54G|LOC100288778_uc010sdh.1_RNA					SubName: Full=Actin nucleation promoting factor; Flags: Fragment;												0						TGACCTGCCCAGCATTGCCAA	0.587000													3	49					0	0	1	0	0
SLC6A12	6539	broad.mit.edu	37	12	305954	305954	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:305954G>A	uc001qhz.2	-	12	1713	c.1170C>T	c.(1168-1170)TTC>TTT	p.F390F	SLC6A12_uc001qhx.2_Silent_p.F47F|SLC6A12_uc001qhy.2_Intron|SLC6A12_uc001qia.2_Silent_p.F390F|SLC6A12_uc001qib.2_Silent_p.F390F|SLC6A12_uc009zdh.1_Silent_p.F390F	NM_003044	NP_003035	P48065	S6A12_HUMAN	solute carrier family 6 (neurotransmitter	390	Helical; Name=8; (Potential).				cellular nitrogen compound metabolic process|neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(10;0.0172)|all_epithelial(11;0.0283)|all_lung(10;0.0392)|Lung NSC(10;0.0567)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00227)			CCAGCCCTAGGAATATGAGCA	0.582000													83	103					0	0	1	0	0
CCDC77	84318	broad.mit.edu	37	12	527770	527770	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:527770C>T	uc001qig.2	+	5	561	c.381C>T	c.(379-381)CGC>CGT	p.R127R	CCDC77_uc009zdk.2_Silent_p.R95R|CCDC77_uc010sdp.1_Silent_p.R95R|CCDC77_uc010sdq.1_Silent_p.R95R	NM_032358	NP_115734	Q9BR77	CCD77_HUMAN	coiled-coil domain containing 77 isoform a	127						centrosome				ovary(1)	1	all_cancers(10;0.0149)|all_epithelial(11;0.035)|all_lung(10;0.111)|Ovarian(42;0.142)|Lung NSC(10;0.156)		OV - Ovarian serous cystadenocarcinoma(31;0.00123)|BRCA - Breast invasive adenocarcinoma(9;0.033)			ATGTTTTACGCCTCTACTCAG	0.373000													80	112					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2622040	2622040	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:2622040A>T	uc009zdu.1	+	9	1593	c.1280A>T	c.(1279-1281)AAG>ATG	p.K427M	CACNA1C_uc009zdv.1_Missense_Mutation_p.K424M|CACNA1C_uc001qkb.2_Missense_Mutation_p.K427M|CACNA1C_uc001qkc.2_Missense_Mutation_p.K427M|CACNA1C_uc001qke.2_Missense_Mutation_p.K427M|CACNA1C_uc001qkf.2_Missense_Mutation_p.K427M|CACNA1C_uc001qjz.2_Missense_Mutation_p.K427M|CACNA1C_uc001qkd.2_Missense_Mutation_p.K427M|CACNA1C_uc001qkg.2_Missense_Mutation_p.K427M|CACNA1C_uc009zdw.1_Missense_Mutation_p.K427M|CACNA1C_uc001qkh.2_Missense_Mutation_p.K427M|CACNA1C_uc001qkl.2_Missense_Mutation_p.K427M|CACNA1C_uc001qkn.2_Missense_Mutation_p.K427M|CACNA1C_uc001qko.2_Missense_Mutation_p.K427M|CACNA1C_uc001qkp.2_Missense_Mutation_p.K427M|CACNA1C_uc001qkr.2_Missense_Mutation_p.K427M|CACNA1C_uc001qku.2_Missense_Mutation_p.K427M|CACNA1C_uc001qkq.2_Missense_Mutation_p.K427M|CACNA1C_uc001qks.2_Missense_Mutation_p.K427M|CACNA1C_uc001qkt.2_Missense_Mutation_p.K427M|CACNA1C_uc001qka.1_Intron|CACNA1C_uc001qki.1_Missense_Mutation_p.K163M|CACNA1C_uc001qkj.1_Missense_Mutation_p.K163M|CACNA1C_uc001qkk.1_Missense_Mutation_p.K163M|CACNA1C_uc001qkm.1_Missense_Mutation_p.K163M|CACNA1C_uc009zdy.1_Missense_Mutation_p.K52M|CACNA1C_uc001qkv.1_Translation_Start_Site	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	427	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CTGCGGGAGAAGCAGCAGCTA	0.557000													20	19					0	0	1	0	0
CCND2	894	broad.mit.edu	37	12	4409052	4409052	+	Silent	SNP	G	A	A	rs149961693		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:4409052G>A	uc001qmo.2	+	5	1052	c.747G>A	c.(745-747)CAG>CAA	p.Q249Q		NM_001759	NP_001750	P30279	CCND2_HUMAN	cyclin D2	249					cell division|positive regulation of cyclin-dependent protein kinase activity|positive regulation of protein phosphorylation	cyclin-dependent protein kinase holoenzyme complex|cytoplasm|membrane|nucleus	protein kinase binding			haematopoietic_and_lymphoid_tissue(1)|breast(1)|kidney(1)	3			all cancers(3;4.15e-10)|GBM - Glioblastoma multiforme(3;6.34e-05)|Colorectal(7;0.00245)|OV - Ovarian serous cystadenocarcinoma(31;0.00301)|COAD - Colon adenocarcinoma(12;0.0264)|STAD - Stomach adenocarcinoma(119;0.206)			GCCAGGAGCAGATTGAGGCGG	0.527000			T	IGL@	NHL,CLL								61	62					0	0	1	0	0
ENO2	2026	broad.mit.edu	37	12	7025601	7025601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:7025601C>T	uc001qru.1	+	3	328	c.106C>T	c.(106-108)CCC>TCC	p.P36S	ENO2_uc009zfi.1_Missense_Mutation_p.P36S|ENO2_uc010sfq.1_Missense_Mutation_p.P36S|ENO2_uc001qrv.1_Missense_Mutation_p.P36S	NM_001975	NP_001966	P09104	ENOG_HUMAN	enolase 2	36					gluconeogenesis|glycolysis	phosphopyruvate hydratase complex|plasma membrane	magnesium ion binding|phosphopyruvate hydratase activity				0						GGCTGCAGTGCCCAGTGGAGC	0.552000													10	23					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7635291	7635291	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:7635291G>A	uc001qsz.3	-	14	3323	c.3195C>T	c.(3193-3195)TTC>TTT	p.F1065F	CD163_uc001qta.3_Silent_p.F1065F|CD163_uc009zfw.2_Silent_p.F1098F	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1065	Helical; (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						ATAATGCGACGAAAATGGCCA	0.423000													71	99					0	0	1	0	0
RIMKLB	57494	broad.mit.edu	37	12	8866624	8866624	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:8866624G>A	uc001quu.2	+	2	413	c.162G>A	c.(160-162)GAG>GAA	p.E54E	RIMKLB_uc009zgf.1_RNA|RIMKLB_uc001qux.2_Silent_p.E54E|RIMKLB_uc010sgl.1_Silent_p.E54E|RIMKLB_uc001quw.2_Silent_p.E54E	NM_020734	NP_065785	Q9ULI2	RIMKB_HUMAN	ribosomal modification protein rimK-like family	54					protein modification process	cytoplasm	acid-amino acid ligase activity|ATP binding|metal ion binding				0						TGACAATCGAGCAAGGAAACC	0.403000													3	64					0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11546107	11546107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:11546107C>T	uc010shk.1	-	3	940	c.905G>A	c.(904-906)GGA>GAA	p.G302E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGCTTTCCTGGAGGAGA	0.597000													240	355					0	0	1	0	0
ATF7IP	55729	broad.mit.edu	37	12	14649168	14649168	+	Missense_Mutation	SNP	T	C	C	rs137897287		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:14649168T>C	uc001rbw.2	+	14	3442	c.3284T>C	c.(3283-3285)GTT>GCT	p.V1095A	ATF7IP_uc001rbx.2_Missense_Mutation_p.V1094A|ATF7IP_uc001rby.3_Missense_Mutation_p.V1095A|ATF7IP_uc001rca.2_Missense_Mutation_p.V1095A	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	1095					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						TTTGTAGGTGTTACAGTTCGA	0.328000													38	41					0	0	1	0	0
HIST4H4	121504	broad.mit.edu	37	12	14923946	14923946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:14923946C>T	uc001rcf.3	-	1	120	c.73G>A	c.(73-75)GAC>AAC	p.D25N	HIST4H4_uc001rce.2_RNA	NM_175054	NP_778224	P62805	H4_HUMAN	histone cluster 4, H4	25					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(2)	2						TGGATATTGTCCCGCAGCACC	0.607000											OREG0021698	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	44	54					0	0	1	0	0
PTHLH	5744	broad.mit.edu	37	12	28116513	28116513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:28116513C>T	uc001rik.2	-	3	595	c.292G>A	c.(292-294)GAT>AAT	p.D98N	PTHLH_uc001ril.2_Missense_Mutation_p.D98N|PTHLH_uc001rim.2_Missense_Mutation_p.D98N|PTHLH_uc001rin.2_Missense_Mutation_p.D98N	NM_198966	NP_945317	P12272	PTHR_HUMAN	parathyroid hormone-like hormone isoform 1	98					activation of adenylate cyclase activity by G-protein signaling pathway|cAMP metabolic process|cell-cell signaling|epidermis development|female pregnancy|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation	cytoplasm|extracellular space|nucleus	hormone activity|peptide hormone receptor binding			breast(1)	1	Lung SC(9;0.184)					CCCTCATCATCAGACCCAAAT	0.527000													101	144					0	0	1	0	0
C12orf35	55196	broad.mit.edu	37	12	32134230	32134230	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:32134230T>C	uc001rks.2	+	4	755	c.341T>C	c.(340-342)GTT>GCT	p.V114A		NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	114										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			TCTTCAGGAGTTACCCAAAAC	0.418000													19	53					0	0	1	0	0
LRRK2	120892	broad.mit.edu	37	12	40646759	40646759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:40646759C>T	uc001rmg.3	+	11	1350	c.1229C>T	c.(1228-1230)TCA>TTA	p.S410L	LRRK2_uc001rmh.1_Missense_Mutation_p.S32L	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	410					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				ATGCATTCTTCATCAAAGGAA	0.363000													33	57					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43833462	43833462	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:43833462G>A	uc010skx.1	-	18	2556	c.2556C>T	c.(2554-2556)CCC>CCT	p.P852P	ADAMTS20_uc001rno.1_Silent_p.P6P|ADAMTS20_uc001rnp.1_Silent_p.P6P	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	852	TSP type-1 2.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ATGGTCCATAGGGGTCCCATG	0.433000													64	98					0	0	1	0	0
SLC38A1	81539	broad.mit.edu	37	12	46601349	46601349	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:46601349G>A	uc001rpa.2	-	7	702	c.444C>T	c.(442-444)TTC>TTT	p.F148F	SLC38A1_uc001rpb.2_Silent_p.F148F|SLC38A1_uc001rpc.2_Silent_p.F148F|SLC38A1_uc001rpd.2_Silent_p.F148F|SLC38A1_uc001rpe.2_Silent_p.F148F|SLC38A1_uc010slh.1_Silent_p.F121F|SLC38A1_uc009zkj.1_Silent_p.F148F	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	148	Helical; (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			CAAAGATTACGAACTTCCCTG	0.413000													53	110					0	0	1	0	0
RHEBL1	121268	broad.mit.edu	37	12	49460443	49460443	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:49460443G>A	uc001rtc.1	-	4	441	c.234C>T	c.(232-234)GTC>GTT	p.V78V	RHEBL1_uc001rtd.1_Silent_p.V74V|RHEBL1_uc009zlc.1_RNA	NM_144593	NP_653194	Q8TAI7	REBL1_HUMAN	Ras homolog enriched in brain like 1 precursor	78					positive regulation of NF-kappaB transcription factor activity|small GTPase mediated signal transduction|TOR signaling cascade	cytoplasm|plasma membrane	GTP binding|GTPase activity|protein binding			lung(1)|breast(1)	2						CATAACCATGGACCCCAATGA	0.463000													48	67					0	0	1	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50190289	50190289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:50190289G>A	uc009zlk.2	-	8	1556	c.1354C>T	c.(1354-1356)CCA>TCA	p.P452S	NCKAP5L_uc001rvc.3_5'Flank|NCKAP5L_uc001rvb.2_Missense_Mutation_p.P45S	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	448	Pro-rich.									central_nervous_system(1)	1						CCCCTAGCTGGAGAGGGCAGA	0.632000													12	17					0	0	1	0	0
RACGAP1	29127	broad.mit.edu	37	12	50384470	50384470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:50384470G>A	uc001rvt.2	-	18	2130	c.1820C>T	c.(1819-1821)CCT>CTT	p.P607L	RACGAP1_uc009zlm.1_Missense_Mutation_p.P607L|RACGAP1_uc001rvs.2_Missense_Mutation_p.P607L|RACGAP1_uc001rvu.2_Missense_Mutation_p.P607L	NM_013277	NP_037409	Q9H0H5	RGAP1_HUMAN	Rac GTPase activating protein 1	607					blood coagulation|cytokinesis, actomyosin contractile ring assembly|cytokinesis, initiation of separation|embryo development|microtubule-based movement|neuroblast proliferation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|spermatogenesis|sulfate transport	acrosomal vesicle|cytosol|microtubule|midbody|nucleus|spindle	alpha-tubulin binding|beta-tubulin binding|gamma-tubulin binding|GTPase activator activity|metal ion binding			kidney(1)	1						TGCATACCTAGGAGTGTTCTT	0.403000													63	99					0	0	1	0	0
KRT85	3891	broad.mit.edu	37	12	52761180	52761180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:52761180G>A	uc001sag.2	-	1	130	c.10C>T	c.(10-12)CGC>TGC	p.R4C		NM_002283	NP_002274	P78386	KRT85_HUMAN	keratin 85	4	Head.				epidermis development	keratin filament	protein binding|structural molecule activity			ovary(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		CTGTAGGAGCGGCACGACATC	0.627000													15	43					0	0	1	0	0
KRT1	3848	broad.mit.edu	37	12	53072387	53072387	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:53072387G>A	uc001sau.1	-	2	804	c.745C>T	c.(745-747)CAA>TAA	p.Q249*	KRT1_uc001sav.1_Nonsense_Mutation_p.Q249*	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	249	Coil 1B.|Rod.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						AACCGAGATTGATCACTCTTC	0.468000													97	133					0	0	1	0	0
KRT77	374454	broad.mit.edu	37	12	53086575	53086575	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:53086575C>T	uc001saw.2	-	6	1199	c.1170G>A	c.(1168-1170)CAG>CAA	p.Q390Q	KRT77_uc009zmi.2_Silent_p.Q148Q	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	390	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(1)	1						CCTGCAGCCTCTGGACGGTGC	0.592000													43	66					0	0	1	0	0
PDE1B	5153	broad.mit.edu	37	12	54971083	54971083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:54971083G>A	uc001sgd.1	+	15	1748	c.1582G>A	c.(1582-1584)GAA>AAA	p.E528K	PDE1B_uc010soz.1_Missense_Mutation_p.E391K|PDE1B_uc010spa.1_Missense_Mutation_p.E487K|PDE1B_uc001sgf.2_Missense_Mutation_p.E391K|PDE1B_uc001sge.2_Missense_Mutation_p.E508K|PDE1B_uc009znq.2_Missense_Mutation_p.E324K	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	528					activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						TGCCGAAGATGAACACAACCA	0.562000													108	170					0	0	1	0	0
OR6C68	403284	broad.mit.edu	37	12	55886157	55886157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:55886157C>T	uc010spo.1	+	1	11	c.11C>T	c.(10-12)TCA>TTA	p.S4L		NM_001005519	NP_001005519	A6NDL8	O6C68_HUMAN	olfactory receptor, family 6, subfamily C,	Error:Variant_position_missing_in_A6NDL8_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATGCAGAAGTCAGTAATGAGA	0.368000													70	73					0	0	1	0	0
OR6C4	341418	broad.mit.edu	37	12	55945503	55945503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:55945503G>A	uc010spp.1	+	1	493	c.493G>A	c.(493-495)GAT>AAT	p.D165N		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GACCCAGGTAGATTTCTGTGT	0.473000													106	149					0	0	1	0	0
OR6C4	341418	broad.mit.edu	37	12	55945843	55945843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:55945843C>T	uc010spp.1	+	1	833	c.833C>T	c.(832-834)TCG>TTG	p.S278L		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	278	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTCATTACTTCGGTTACTCCC	0.368000													29	54					0	0	1	0	0
DNAJC14	85406	broad.mit.edu	37	12	56222238	56222238	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:56222238G>C	uc001shx.1	-	2	409	c.205C>G	c.(205-207)CAT>GAT	p.H69D	DNAJC14_uc001shu.1_Missense_Mutation_p.H69D|DNAJC14_uc009zob.1_Missense_Mutation_p.H69D|DNAJC14_uc001shy.1_Missense_Mutation_p.H69D	NM_032364	NP_115740	Q6Y2X3	DJC14_HUMAN	dopamine receptor interacting protein	69					protein folding|protein transport	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|unfolded protein binding			ovary(3)|large_intestine(1)	4						TCCAACCAATGGGCTGGGTTT	0.577000													73	123					0	0	1	0	0
SMARCC2	6601	broad.mit.edu	37	12	56558150	56558150	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:56558150G>A	uc001skb.2	-	27	3611	c.3505C>T	c.(3505-3507)CAA>TAA	p.Q1169*	SMARCC2_uc001skd.2_Nonsense_Mutation_p.Q1107*|SMARCC2_uc001ska.2_Intron|SMARCC2_uc001skc.2_Nonsense_Mutation_p.Q1106*|SMARCC2_uc010sqf.1_Intron	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	1169	Pro-rich.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			GCAGGGCTTTGGGCTGCGGCG	0.652000													82	98					0	0	1	0	0
STAT6	6778	broad.mit.edu	37	12	57501992	57501992	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:57501992G>A	uc009zpe.2	-	2	321	c.70C>T	c.(70-72)CAA>TAA	p.Q24*	STAT6_uc009zpf.2_Nonsense_Mutation_p.Q24*|STAT6_uc001sna.2_Nonsense_Mutation_p.Q24*|STAT6_uc010srb.1_Intron|STAT6_uc010src.1_5'UTR|STAT6_uc010srd.1_Intron|STAT6_uc009zpg.2_Nonsense_Mutation_p.Q73*	NM_003153	NP_003144	P42226	STAT6_HUMAN	signal transducer and activator of transcription	24					regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4						CGCAGGTGTTGGGGAAAGTCG	0.587000													17	29					0	0	1	0	0
R3HDM2	22864	broad.mit.edu	37	12	57677670	57677670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:57677670G>A	uc009zpm.1	-	11	1101	c.1066C>T	c.(1066-1068)CTT>TTT	p.L356F	R3HDM2_uc010srn.1_RNA|R3HDM2_uc001snu.2_Missense_Mutation_p.L17F|R3HDM2_uc001snr.2_Missense_Mutation_p.L83F|R3HDM2_uc001sns.2_Missense_Mutation_p.L356F|R3HDM2_uc001snt.2_Missense_Mutation_p.L370F	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	356	Ser-rich.					nucleus	nucleic acid binding			ovary(2)	2						CCTCGGGTAAGGATAGAGATT	0.567000													133	188					0	0	1	0	0
USP15	9958	broad.mit.edu	37	12	62783684	62783684	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:62783684C>A	uc001src.1	+	14	1769	c.1760C>A	c.(1759-1761)TCA>TAA	p.S587*	USP15_uc001srb.1_Nonsense_Mutation_p.S558*	NM_006313	NP_006304	Q9Y4E8	UBP15_HUMAN	ubiquitin specific peptidase 15	587					protein deubiquitination|ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)	3			GBM - Glioblastoma multiforme(1;0.000276)	GBM - Glioblastoma multiforme(28;0.0622)		ACTGGTTCTTCACTTTTTGGT	0.393000													45	52					1.03325e-14	1.03997e-14	1	1	0
TRHDE	29953	broad.mit.edu	37	12	72956643	72956643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:72956643G>A	uc001sxa.2	+	9	1760	c.1730G>A	c.(1729-1731)AGA>AAA	p.R577K		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	577	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						GCTTTAAAAAGAAATGGGAAA	0.284000													47	69					0	0	1	0	0
KITLG	4254	broad.mit.edu	37	12	88926235	88926235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:88926235G>A	uc001tav.2	-	3	358	c.175C>T	c.(175-177)CCC>TCC	p.P59S	KITLG_uc001taw.2_Missense_Mutation_p.P59S|KITLG_uc009zso.1_RNA	NM_000899	NP_000890	P21583	SCF_HUMAN	KIT ligand isoform b precursor	59	Extracellular (Potential).				cell adhesion|cell proliferation|hemopoiesis|male gonad development|positive regulation of DNA replication|signal transduction	cytoplasm|cytoskeleton|integral to membrane|plasma membrane	growth factor activity|identical protein binding|stem cell factor receptor binding			ovary(1)	1						TCCATCCCGGGGACATATTTG	0.328000									Testicular_Cancer_Familial_Clustering_of				91	107					0	0	1	0	0
C12orf12	196477	broad.mit.edu	37	12	91347590	91347590	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:91347590C>T	uc001tbj.2	-	1	1364	c.930G>A	c.(928-930)GAG>GAA	p.E310E		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	310	Potential.|Glu-rich.									central_nervous_system(1)|pancreas(1)	2						cctcttcctcctcatcttcga	0.065000													23	17					0	0	1	0	0
DCN	1634	broad.mit.edu	37	12	91572281	91572281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:91572281C>T	uc001tbs.2	-	1	143	c.49G>A	c.(49-51)GGA>AGA	p.G17R	DCN_uc001tbo.2_Missense_Mutation_p.G17R|DCN_uc001tbp.2_Missense_Mutation_p.G17R|DCN_uc001tbq.2_Missense_Mutation_p.G17R|DCN_uc001tbr.2_Missense_Mutation_p.G17R|DCN_uc001tbt.2_Missense_Mutation_p.G17R|DCN_uc001tbu.2_Missense_Mutation_p.G17R	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	17					organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						TGAAACGGTCCAGCCCAGGAA	0.473000											OREG0022021	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	48	56					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97137214	97137214	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:97137214T>A	uc001tet.1	+	20	2607	c.2529T>A	c.(2527-2529)AAT>AAA	p.N843K		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	843										skin(6)|ovary(1)	7						GCCTCATCAATGAAGTGTGTA	0.398000													35	55					0	0	1	0	0
NEDD1	121441	broad.mit.edu	37	12	97334297	97334297	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:97334297T>C	uc001teu.3	+	10	1567	c.1228T>C	c.(1228-1230)TTC>CTC	p.F410L	NEDD1_uc001tev.3_Missense_Mutation_p.F410L|NEDD1_uc010svc.1_Missense_Mutation_p.F321L|NEDD1_uc001tew.2_Missense_Mutation_p.F417L|NEDD1_uc001tex.2_Missense_Mutation_p.F321L	NM_152905	NP_690869	Q8NHV4	NEDD1_HUMAN	neural precursor cell expressed, developmentally	410					cell division|G2/M transition of mitotic cell cycle|mitosis	cytosol					0						AGGTGACATGTTCTCACCTAT	0.368000													64	69					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101336183	101336183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:101336183G>A	uc010svm.1	+	5	898	c.326G>A	c.(325-327)GGA>GAA	p.G109E	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.G74E|ANO4_uc001thx.2_Missense_Mutation_p.G109E	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	109	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AAATCAAATGGACTTTACTTT	0.368000										HNSCC(74;0.22)			77	101					0	0	1	0	0
RFX4	5992	broad.mit.edu	37	12	107048104	107048104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:107048104C>T	uc001tlr.2	+	4	356	c.290C>T	c.(289-291)CCT>CTT	p.P97L	RFX4_uc010swv.1_RNA|RFX4_uc001tls.2_Missense_Mutation_p.P106L|RFX4_uc001tlt.2_Missense_Mutation_p.P106L	NM_213594	NP_998759	Q33E94	RFX4_HUMAN	regulatory factor X4 isoform c	97	|RFX-type winged-helix.				transcription, DNA-dependent	nucleus	DNA binding			upper_aerodigestive_tract(1)	1						GATACCCAACCTGTCAATGCT	0.483000													50	59					0	0	1	0	0
ACACB	32	broad.mit.edu	37	12	109577476	109577476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:109577476G>A	uc001tob.2	+	2	385	c.266G>A	c.(265-267)AGA>AAA	p.R89K	ACACB_uc001toc.2_Missense_Mutation_p.R89K	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	89					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	GGTCGGCGGAGAAACTCCCTA	0.632000													56	76					0	0	1	0	0
GIT2	9815	broad.mit.edu	37	12	110426821	110426821	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:110426821G>T	uc001tps.2	-	4	517	c.352C>A	c.(352-354)CAT>AAT	p.H118N	GIT2_uc001tpq.2_Missense_Mutation_p.H118N|GIT2_uc001tpv.2_Missense_Mutation_p.H118N|GIT2_uc001tpu.2_Missense_Mutation_p.H118N|GIT2_uc001tpt.2_Missense_Mutation_p.H118N|GIT2_uc010sxu.1_Missense_Mutation_p.H56N|GIT2_uc001tpw.2_Missense_Mutation_p.H118N|GIT2_uc010sxv.1_Missense_Mutation_p.H118N	NM_057169	NP_476510	Q14161	GIT2_HUMAN	G protein-coupled receptor kinase interacting	118	Arf-GAP.				regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	nucleoplasm	ARF GTPase activator activity|protein binding|zinc ion binding			central_nervous_system(1)	1						GGCAAGCGATGGACGAACGCT	0.453000													10	311					0.0135373	0.0135498	1	1	0
PPTC7	160760	broad.mit.edu	37	12	110983803	110983804	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:110983803_110983804GG>AA	uc001trh.1	-	3	711_712	c.483_484CC>TT	c.(481-486)TTCCTG>TTTTTG	p.161_162FL>FL		NM_139283	NP_644812	Q8NI37	PPTC7_HUMAN	T-cell activation protein phosphatase 2C	161_162	PP2C-like.						metal ion binding|phosphoprotein phosphatase activity				0						CTGACAACCAGGAAGCCTGAAT	0.550000													42	62					0	0	1	0	0
CCDC63	160762	broad.mit.edu	37	12	111342456	111342456	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:111342456G>A	uc001trv.1	+	11	1602	c.1407G>A	c.(1405-1407)GTG>GTA	p.V469V	CCDC63_uc010sye.1_Silent_p.V429V|CCDC63_uc001trw.1_Silent_p.V384V	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	469										skin(6)|ovary(1)|pancreas(1)	8						TCCTGGAAGTGGAAGGGGCAG	0.577000													56	102					0	0	1	0	0
DTX1	1840	broad.mit.edu	37	12	113532725	113532725	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:113532725C>T	uc001tuk.1	+	6	1695	c.1359C>T	c.(1357-1359)CTC>CTT	p.L453L		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	453	RING-type.				negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						TGCTGTGCCTCGTGGCCATGT	0.657000													49	64					0	0	1	0	0
RASAL1	8437	broad.mit.edu	37	12	113537790	113537790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:113537790C>T	uc001tum.1	-	22	2652	c.2359G>A	c.(2359-2361)GAG>AAG	p.E787K	RASAL1_uc010syp.1_Missense_Mutation_p.E788K|RASAL1_uc001tul.2_Missense_Mutation_p.E759K|RASAL1_uc001tun.1_Missense_Mutation_p.E789K	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	787					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						TGGAACTCCTCGTGGGCACGA	0.667000													51	63					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117993060	117993060	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:117993060C>T	uc001two.2	-	9	1400	c.1345G>A	c.(1345-1347)GAC>AAC	p.D449N		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	478					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTGTTGATGTCACACGGAACG	0.483000													34	31					0	0	1	0	0
CCDC60	160777	broad.mit.edu	37	12	119866561	119866561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:119866561G>A	uc001txe.2	+	2	629	c.164G>A	c.(163-165)CGA>CAA	p.R55Q	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	55										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GACCTTATACGAAGCCGGTGA	0.478000													10	16					0	0	1	0	0
CCDC60	160777	broad.mit.edu	37	12	119957972	119957972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:119957972G>A	uc001txe.2	+	9	1480	c.1015G>A	c.(1015-1017)GAA>AAA	p.E339K	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	339										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		TGCTTATAAGGAAATGCAGAC	0.483000													115	145					0	0	1	0	0
RNF10	9921	broad.mit.edu	37	12	120984355	120984355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:120984355G>A	uc001typ.3	+	2	788	c.305G>A	c.(304-306)GGC>GAC	p.G102D	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Missense_Mutation_p.G8D	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	102	Interaction with MEOX2.|Ser-rich.				negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AGGGGCGGCGGCAGCAGCAAA	0.443000													41	81					0	0	1	0	0
MORN3	283385	broad.mit.edu	37	12	122092264	122092264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:122092264C>T	uc001uax.2	-	3	550	c.379G>A	c.(379-381)GGC>AGC	p.G127S	MORN3_uc001uay.2_RNA	NM_173855	NP_776254	Q6PF18	MORN3_HUMAN	MORN repeat containing 3	127	MORN 4.										0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000409)|Epithelial(86;0.00145)		TACATGCGGCCCCACCCGCTG	0.582000													8	14					0	0	1	0	0
MLXIP	22877	broad.mit.edu	37	12	122625501	122625501	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:122625501T>C	uc001ubq.2	+	16	2509	c.2509T>C	c.(2509-2511)TTC>CTC	p.F837L	MLXIP_uc001ubt.2_Missense_Mutation_p.F444L	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	837	Mediates heterotypic interactions between MLXIP and MLX and is required for cytoplasmic localization.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		CACACTGCAGTTCAGCATCAT	0.602000													82	107					0	0	1	0	0
CCDC62	84660	broad.mit.edu	37	12	123273331	123273331	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:123273331T>G	uc001udc.2	+	5	670	c.525T>G	c.(523-525)AAT>AAG	p.N175K	CCDC62_uc010tah.1_RNA|CCDC62_uc001udf.2_Missense_Mutation_p.N175K|CCDC62_uc001ude.2_Intron	NM_201435	NP_958843	Q6P9F0	CCD62_HUMAN	coiled-coil domain containing 62 isoform b	175						cytoplasm|nucleus				ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.51e-06)|Epithelial(86;2.65e-05)|BRCA - Breast invasive adenocarcinoma(302;0.206)		AGGCAGTTAATCACATTGCAG	0.333000													51	81					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834437	125834438	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:125834437_125834438CC>AT	uc001uhe.1	+	2	500_501	c.492_493CC>AT	c.(490-495)TTCCCT>TTATCT	p.164_165FP>LS		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	164_165	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TGTTTGCTTTCCCTGAGGCCAG	0.584000													41	96					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130926975	130926975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr12:130926975C>T	uc001uil.2	-	8	1035	c.871G>A	c.(871-873)GAC>AAC	p.D291N	RIMBP2_uc001uim.2_Missense_Mutation_p.D199N|RIMBP2_uc001uin.1_5'UTR	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	291						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		TCTCCGATGTCGTCGATGTTC	0.587000													128	127					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19409602	19409602	+	RNA	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:19409602C>T	uc010tcj.1	-	1		c.36508G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TTATTTTTCTCTTCTAGCATG	0.313000													22	15					0	0	1	0	0
LATS2	26524	broad.mit.edu	37	13	21562821	21562821	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:21562821G>A	uc009zzs.2	-	4	1463	c.1098C>T	c.(1096-1098)TCC>TCT	p.S366S	LATS2_uc001unr.3_Silent_p.S366S	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	366					cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		ACTGCTGGACGGAGGTGCTGC	0.721000													51	54					0	0	1	0	0
CDK8	1024	broad.mit.edu	37	13	26923281	26923281	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:26923281G>C	uc001uqr.1	+	3	303	c.277G>C	c.(277-279)GTG>CTG	p.V93L	CDK8_uc001uqs.1_Missense_Mutation_p.V93L|CDK8_uc001uqt.1_5'UTR	NM_001260	NP_001251	P49336	CDK8_HUMAN	cyclin-dependent kinase 8	93	Protein kinase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mediator complex	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|large_intestine(1)|ovary(1)|skin(1)	5	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0384)|Epithelial(112;0.142)|OV - Ovarian serous cystadenocarcinoma(117;0.188)		TGATAGGAAGGTGTGGCTTCT	0.413000													85	205					0	0	1	0	0
FLT3	2322	broad.mit.edu	37	13	28578206	28578206	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:28578206G>A	uc001urw.2	-	24	3047	c.2965C>T	c.(2965-2967)CAG>TAG	p.Q989*	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Nonsense_Mutation_p.Q948*	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	989	Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	TCTTCGACCTGAGCCTGCGGA	0.458000			Mis|O		AML|ALL								46	86					0	0	1	0	0
PAN3	255967	broad.mit.edu	37	13	28830607	28830607	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:28830607C>T	uc001urz.2	+	6	749	c.741C>T	c.(739-741)ATC>ATT	p.I247I	PAN3_uc010tdo.1_Silent_p.I393I|PAN3_uc001ury.2_Silent_p.I81I|PAN3_uc001urx.2_Silent_p.I193I	NM_175854	NP_787050	Q58A45	PAN3_HUMAN	PABP1-dependent poly A-specific ribonuclease	393	Interaction with polyadenylate-binding protein.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening	centrosome|cytosol	ATP binding|protein kinase activity			ovary(1)	1	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)	Colorectal(13;0.000334)	all cancers(112;0.0102)|Epithelial(112;0.0803)|GBM - Glioblastoma multiforme(144;0.121)|OV - Ovarian serous cystadenocarcinoma(117;0.13)|Lung(94;0.174)		GTCAGGTGATCCAAAAGGAAA	0.423000													51	54					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	28877367	28877367	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:28877367G>A	uc001usb.3	-	30	4239	c.3954C>T	c.(3952-3954)ATC>ATT	p.I1318I	FLT1_uc010aap.2_Silent_p.I323I|FLT1_uc010aaq.2_Silent_p.I443I|FLT1_uc001usa.3_Silent_p.I536I	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	1318	Cytoplasmic (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	AGCAGCACGCGATTTTCCTTT	0.567000													79	93					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29600837	29600837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:29600837C>T	uc001usl.3	+	1	2090	c.2032C>T	c.(2032-2034)CCA>TCA	p.P678S		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	668	Mediates interaction with MAPRE1.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						AGTGGGGCTTCCATATGCCCC	0.592000													22	32					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	30072639	30072639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:30072639G>A	uc001usl.3	+	12	3851	c.3793G>A	c.(3793-3795)GAG>AAG	p.E1265K	MTUS2_uc001usm.3_Missense_Mutation_p.E234K|MTUS2_uc010aau.2_Missense_Mutation_p.E144K|MTUS2_uc010tdq.1_Missense_Mutation_p.E17K	NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	1255	Potential.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						GCAAATACACGAGCAAGAAAA	0.443000													33	53					0	0	1	0	0
RXFP2	122042	broad.mit.edu	37	13	32367214	32367214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:32367214G>A	uc001utt.2	+	16	1846	c.1775G>A	c.(1774-1776)GGA>GAA	p.G592E	RXFP2_uc010aba.2_Missense_Mutation_p.G551E	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	592	Extracellular (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		TATTCTCTTGGAATTTTCCTA	0.294000													30	55					0	0	1	0	0
TRPC4	7223	broad.mit.edu	37	13	38225581	38225581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:38225581C>T	uc001uws.2	-	8	2135	c.1900G>A	c.(1900-1902)GAA>AAA	p.E634K	TRPC4_uc010abv.2_Missense_Mutation_p.E214K|TRPC4_uc001uwt.2_Missense_Mutation_p.E634K|TRPC4_uc010tey.1_Missense_Mutation_p.E634K|TRPC4_uc010abw.2_Missense_Mutation_p.E461K|TRPC4_uc010abx.2_Missense_Mutation_p.E634K|TRPC4_uc010aby.2_Intron	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	634	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		AATTTCCATTCTATATCTGCA	0.423000													50	102					0	0	1	0	0
VPS36	51028	broad.mit.edu	37	13	53016526	53016526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:53016526C>T	uc001vgs.2	-	2	185	c.151G>A	c.(151-153)GAT>AAT	p.D51N	VPS36_uc001vgq.2_5'UTR	NM_016075	NP_057159	Q86VN1	VPS36_HUMAN	vacuolar protein sorting 36	51	GLUE N-terminal.				cellular membrane organization|endosome transport|protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|late endosome|membrane|nucleus	lipid binding			skin(1)	1		Breast(56;0.000207)|Lung NSC(96;0.00212)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.14e-08)		TTTTTCTGATCTCTCCAAATC	0.244000													26	46					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58206728	58206728	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:58206728C>T	uc001vhq.1	+	1	940	c.48C>T	c.(46-48)CTC>CTT	p.L16L	PCDH17_uc010aec.1_Silent_p.L16L	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	16					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CCCCTGCCCTCACTCTCAAGA	0.612000													16	15					0	0	1	0	0
PIBF1	10464	broad.mit.edu	37	13	73491222	73491222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:73491222G>A	uc001vjc.2	+	13	1953	c.1648G>A	c.(1648-1650)GAA>AAA	p.E550K	PIBF1_uc001vjb.2_Missense_Mutation_p.E550K|PIBF1_uc010aep.2_Missense_Mutation_p.E9K	NM_006346	NP_006337	Q8WXW3	PIBF1_HUMAN	progesterone-induced blocking factor 1	550						centrosome				ovary(1)|breast(1)	2		Prostate(6;0.00191)|Breast(118;0.0736)|Acute lymphoblastic leukemia(28;0.0865)		GBM - Glioblastoma multiforme(99;0.000664)		AGTTGAAAATGAAGATGAGGC	0.308000													52	65					0	0	1	0	0
SLITRK6	84189	broad.mit.edu	37	13	86369420	86369420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:86369420C>T	uc001vll.1	-	2	1683	c.1224G>A	c.(1222-1224)ATG>ATA	p.M408I	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	408	Extracellular (Potential).|LRR 7.					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		TCGTTAGGTTCATAAACGATC	0.343000													19	28					0	0	1	0	0
HS6ST3	266722	broad.mit.edu	37	13	97485242	97485242	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:97485242C>T	uc001vmw.2	+	2	1230	c.1206C>T	c.(1204-1206)TTC>TTT	p.F402F		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	402	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					ATCTAAACTTCCTGGACATGC	0.552000													64	107					0	0	1	0	0
NALCN	259232	broad.mit.edu	37	13	101736074	101736074	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:101736074G>A	uc001vox.1	-	31	3760	c.3571C>T	c.(3571-3573)CCG>TCG	p.P1191S		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1191	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GGGCGAGGCGGAAGATGAAGA	0.473000													31	49					0	0	1	0	0
ATP11A	23250	broad.mit.edu	37	13	113470398	113470398	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:113470398T>C	uc001vsi.3	+	6	531	c.443T>C	c.(442-444)GTT>GCT	p.V148A	ATP11A_uc001vsj.3_Missense_Mutation_p.V148A|ATP11A_uc001vsm.1_Missense_Mutation_p.V24A	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	148	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				GTCCTGTAGGTTGGGGACATT	0.557000													64	83					0	0	1	0	0
OR4K2	390431	broad.mit.edu	37	14	20344831	20344831	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:20344831C>T	uc001vwh.1	+	1	405	c.405C>T	c.(403-405)GTC>GTT	p.V135V		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATGCTTCTGTCATTAGTCCCC	0.453000													103	211					0	0	1	0	0
OR4K5	79317	broad.mit.edu	37	14	20389635	20389635	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:20389635G>A	uc010tkw.1	+	1	870	c.870G>A	c.(868-870)AGG>AGA	p.R290R		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	290	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATACACTAAGGAATAGGGATA	0.398000													65	174					0	0	1	0	0
OR11G2	390439	broad.mit.edu	37	14	20665813	20665813	+	Silent	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:20665813T>C	uc010tlb.1	+	1	319	c.319T>C	c.(319-321)TTG>CTG	p.L107L		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	107	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		CTTCTCCTTCTTGGAGATATG	0.537000													68	88					0	0	1	0	0
OR11H4	390442	broad.mit.edu	37	14	20711659	20711659	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:20711659C>T	uc010tld.1	+	1	709	c.709C>T	c.(709-711)CAG>TAG	p.Q237*		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	237	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		AGCTGTTTTTCAGGTCCCTTC	0.408000													150	255					0	0	1	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21792827	21792827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:21792827G>A	uc001wag.2	+	14	1813	c.1813G>A	c.(1813-1815)GAA>AAA	p.E605K	RPGRIP1_uc001wah.2_Missense_Mutation_p.E247K|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001waj.1_Missense_Mutation_p.E70K|RPGRIP1_uc001wak.2_Missense_Mutation_p.E80K|RPGRIP1_uc010aim.2_Intron|RPGRIP1_uc001wal.2_Nonsense_Mutation_p.W13*|RPGRIP1_uc001wam.2_5'UTR	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	605					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		GTTATGTTTGGAAACACTGCC	0.483000													63	107					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23862256	23862256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:23862256G>A	uc001wjv.2	-	24	3183	c.3116C>T	c.(3115-3117)TCC>TTC	p.S1039F		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1039	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TTGCTCTAGGGATCCCTCCAG	0.502000													57	45					0	0	1	0	0
IRF9	10379	broad.mit.edu	37	14	24632675	24632675	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:24632675C>T	uc001wmq.2	+	4	580	c.453C>T	c.(451-453)AAC>AAT	p.N151N	RNF31_uc001wmp.2_RNA|IRF9_uc010alj.2_Silent_p.N49N	NM_006084	NP_006075	Q00978	IRF9_HUMAN	interferon-stimulated transcription factor 3,	151					interferon-gamma-mediated signaling pathway|response to virus|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytosol|nucleoplasm	DNA binding|identical protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				GBM - Glioblastoma multiforme(265;0.00853)		CCATGCAGAACTGCACACTCA	0.537000													88	98					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24879077	24879077	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:24879077A>G	uc001wpf.3	+	4	2395	c.2077A>G	c.(2077-2079)ACC>GCC	p.T693A		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	693					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						TGCAGGGCCAACCTTGGATGT	0.587000													8	15					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24886412	24886412	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:24886412G>A	uc001wpf.3	+	9	5775	c.5457G>A	c.(5455-5457)CGG>CGA	p.R1819R		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1819					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						GTTTCAAGCGGGAGAGCCAGG	0.592000													39	76					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	31290665	31290665	+	RNA	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:31290665A>G	uc001wqo.2	+	1		c.33A>G								full-length cDNA clone CS0DC024YB05 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).																		GAAACCTCGGAAAGTGGTGTT	0.483000													19	32					0	0	1	0	0
INSM2	84684	broad.mit.edu	37	14	36004978	36004978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:36004978C>T	uc001wth.1	+	1	1731	c.1520C>T	c.(1519-1521)CCT>CTT	p.P507L		NM_032594	NP_115983	Q96T92	INSM2_HUMAN	insulinoma-associated protein IA-6	507					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			lung(1)|skin(1)	2	Breast(36;0.122)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(9;2.16e-07)|Lung(238;2.63e-07)|Epithelial(34;0.00145)|all cancers(34;0.00452)	GBM - Glioblastoma multiforme(112;0.0223)		GCGGGGGCTCCTCCCGAAACG	0.627000													16	21					0	0	1	0	0
MGAT2	4247	broad.mit.edu	37	14	50088228	50088228	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:50088228A>G	uc001wwr.2	+	1	740	c.242A>G	c.(241-243)CAG>CGG	p.Q81R	SDCCAG1_uc010anj.1_Intron|RPL36AL_uc001wwq.1_5'Flank	NM_002408	NP_002399	Q10469	MGAT2_HUMAN	mannosyl (alpha-1,6-)-glycoprotein	81	Lumenal (Potential).				oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity				0	all_epithelial(31;0.0021)|Breast(41;0.0124)					GCGGTCCCCCAGCCCGAGGCG	0.687000													37	52					0	0	1	0	0
NIN	51199	broad.mit.edu	37	14	51219352	51219352	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:51219352G>C	uc001wym.2	-	21	5025	c.4834C>G	c.(4834-4836)CAA>GAA	p.Q1612E	NIN_uc001wyi.2_Missense_Mutation_p.Q1612E|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Missense_Mutation_p.Q899E|NIN_uc010tqp.1_Missense_Mutation_p.Q1618E|NIN_uc001wyo.2_Missense_Mutation_p.Q1612E	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	1612	Potential.				centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					GTTAGACGTTGATTAAGTTCT	0.363000			T	PDGFRB	MPD								11	386					0	0	1	0	0
PTGDR	5729	broad.mit.edu	37	14	52741658	52741658	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:52741658C>T	uc001wzq.2	+	2	1158	c.1056C>T	c.(1054-1056)TCC>TCT	p.S352S		NM_000953	NP_000944	Q13258	PD2R_HUMAN	prostaglandin D2 receptor	352	Cytoplasmic (Potential).					integral to membrane|plasma membrane	prostaglandin D receptor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Breast(41;0.0639)|all_epithelial(31;0.0887)				Nedocromil(DB00716)	GCAGCAATTCCACTAACATGG	0.368000													10	17					0	0	1	0	0
BMP4	652	broad.mit.edu	37	14	54417298	54417298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:54417298C>T	uc001xal.3	-	3	866	c.679G>A	c.(679-681)GAG>AAG	p.E227K	BMP4_uc010aoh.2_Missense_Mutation_p.E227K|BMP4_uc001xao.3_Missense_Mutation_p.E227K|BMP4_uc001xan.3_Missense_Mutation_p.E227K	NM_130851	NP_570912	P12644	BMP4_HUMAN	bone morphogenetic protein 4 preproprotein	227					activation of MAPKK activity|blood vessel endothelial cell proliferation involved in sprouting angiogenesis|BMP signaling pathway involved in heart induction|BMP signaling pathway involved in nephric duct formation|branching involved in ureteric bud morphogenesis|bronchus development|bud dilation involved in lung branching|cardiac septum development|cartilage development|endocardial cushion development|epithelial cell proliferation involved in lung morphogenesis|intermediate mesodermal cell differentiation|lung alveolus development|lymphoid progenitor cell differentiation|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway|negative regulation of branching involved in ureteric bud morphogenesis|negative regulation of cell proliferation involved in heart morphogenesis|negative regulation of glomerular mesangial cell proliferation|negative regulation of glomerulus development|negative regulation of immature T cell proliferation in thymus|negative regulation of MAP kinase activity|negative regulation of metanephric comma-shaped body morphogenesis|negative regulation of metanephric S-shaped body morphogenesis|negative regulation of mitosis|negative regulation of myoblast differentiation|negative regulation of phosphorylation|negative regulation of striated muscle tissue development|negative regulation of thymocyte apoptosis|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cardiac muscle fiber development|positive regulation of cartilage development|positive regulation of collagen biosynthetic process|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of kidney development|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|protein localization to nucleus|pulmonary artery endothelial tube morphogenesis|secondary heart field specification|SMAD protein signal transduction|specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway|steroid hormone mediated signaling pathway	extracellular space|proteinaceous extracellular matrix	BMP receptor binding|chemoattractant activity|cytokine activity|growth factor activity				0						GGCTGCTTCTCCCGGGTCCAG	0.567000													101	155					0	0	1	0	0
TBPL2	387332	broad.mit.edu	37	14	55903566	55903566	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:55903566G>A	uc001xby.2	-	2	321	c.321C>T	c.(319-321)ACC>ACT	p.T107T		NM_199047	NP_950248	Q6SJ96	TBPL2_HUMAN	TATA box binding protein like 2	107					multicellular organismal development|transcription initiation from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding				0						TATTTTCCTGGGTAACTTCAT	0.428000													29	61					0	0	1	0	0
NAA30	122830	broad.mit.edu	37	14	57876124	57876124	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:57876124A>T	uc001xcx.3	+	5	1133	c.979A>T	c.(979-981)AAG>TAG	p.K327*	NAA30_uc010trk.1_Nonsense_Mutation_p.K69*|NAA30_uc010aow.2_RNA	NM_001011713	NP_001011713	Q147X3	NAA30_HUMAN	N-acetyltransferase 12	327	N-acetyltransferase.					cytoplasm	peptide alpha-N-acetyltransferase activity			skin(1)	1						AATAACAAATAAGTCCGCTTT	0.289000													27	28					0	0	1	0	0
SLC35F4	341880	broad.mit.edu	37	14	58063412	58063412	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:58063412G>T	uc001xdb.1	-	1	204	c.204C>A	c.(202-204)AAC>AAA	p.N68K	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_Intron	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						TACCTAAAAAGTTGGTAACTT	0.383000													18	27					3.51602e-12	3.5356e-12	1	1	0
DACT1	51339	broad.mit.edu	37	14	59113377	59113377	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:59113377G>A	uc001xdw.2	+	4	2200	c.2036G>A	c.(2035-2037)TGG>TAG	p.W679*	DACT1_uc010trv.1_Nonsense_Mutation_p.W398*|DACT1_uc001xdx.2_Nonsense_Mutation_p.W642*|DACT1_uc010trw.1_Nonsense_Mutation_p.W398*	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	679					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						TACCGGCGGTGGAAGTCCTCG	0.716000													20	20					0	0	1	0	0
C14orf135	64430	broad.mit.edu	37	14	60591812	60591812	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:60591812G>A	uc001xer.3	+	8	2743	c.2221G>A	c.(2221-2223)GTA>ATA	p.V741I	C14orf135_uc001xeq.2_Missense_Mutation_p.V741I|C14orf135_uc010apm.2_RNA	NM_022495	NP_071940	Q63HM2	CN135_HUMAN	hepatitis C virus F protein-binding protein 2	975						integral to membrane		p.V741L(1)		ovary(2)	2		Myeloproliferative disorder(585;0.163)		OV - Ovarian serous cystadenocarcinoma(108;0.127)		TGTTCATACAGTAATGACTTG	0.363000													14	11					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65234479	65234479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:65234479C>T	uc001xht.2	-	29	6175	c.6121G>A	c.(6121-6123)GTG>ATG	p.V2041M	SPTB_uc001xhr.2_Missense_Mutation_p.V2041M|SPTB_uc001xhs.2_Missense_Mutation_p.V2041M|SPTB_uc001xhu.2_Missense_Mutation_p.V2041M|SPTB_uc010aqi.2_Missense_Mutation_p.V702M	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	2041	Spectrin 17.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		ACACTGTCCACTGTGTGTCCA	0.612000													63	82					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65267575	65267575	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:65267575C>T	uc001xht.2	-	7	829	c.775G>A	c.(775-777)GAA>AAA	p.E259K	SPTB_uc001xhr.2_Missense_Mutation_p.E259K|SPTB_uc001xhs.2_Missense_Mutation_p.E259K|SPTB_uc001xhu.2_Missense_Mutation_p.E259K	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	259	Actin-binding.|CH 2.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TCAGGGTTTTCCGTAAAGACA	0.498000											OREG0022735	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	32					0	0	1	0	0
MPP5	64398	broad.mit.edu	37	14	67799544	67799544	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:67799544G>A	uc001xjc.2	+	15	2365	c.1899G>A	c.(1897-1899)CAG>CAA	p.Q633Q	MPP5_uc001xjd.2_Silent_p.Q599Q|ATP6V1D_uc001xje.2_Intron	NM_022474	NP_071919	Q8N3R9	MPP5_HUMAN	membrane protein, palmitoylated 5	633	Guanylate kinase-like.				tight junction assembly	cytoplasm|endomembrane system|tight junction	protein domain specific binding			ovary(1)	1				all cancers(60;0.000388)|OV - Ovarian serous cystadenocarcinoma(108;0.00762)|BRCA - Breast invasive adenocarcinoma(234;0.0106)		AGATGGAGCAGAACAATGGCC	0.368000													3	106					0	0	1	0	0
PLEKHH1	57475	broad.mit.edu	37	14	68046546	68046546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:68046546G>A	uc001xjl.1	+	22	3278	c.3136G>A	c.(3136-3138)GAT>AAT	p.D1046N	PLEKHH1_uc010tsw.1_Missense_Mutation_p.D614N|PLEKHH1_uc001xjn.1_Missense_Mutation_p.D561N|PLEKHH1_uc010tsx.1_5'UTR|PLEKHH1_uc001xjo.1_5'Flank|PLEKHH1_uc001xjp.1_5'Flank	NM_020715	NP_065766	Q9ULM0	PKHH1_HUMAN	pleckstrin homology domain containing, family H	1046	FERM.					cytoskeleton	binding				0				all cancers(60;0.000771)|OV - Ovarian serous cystadenocarcinoma(108;0.00502)|BRCA - Breast invasive adenocarcinoma(234;0.011)		CTTCACGGACGATCCCTCGGG	0.587000													7	25					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70527628	70527628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:70527628C>T	uc001xly.2	-	3	2567	c.1813G>A	c.(1813-1815)GAG>AAG	p.E605K	SLC8A3_uc001xlu.2_Intron|SLC8A3_uc001xlv.2_5'UTR|SLC8A3_uc001xlw.2_Missense_Mutation_p.E605K|SLC8A3_uc001xlx.2_Intron|SLC8A3_uc001xlz.2_Missense_Mutation_p.E605K|SLC8A3_uc010ara.2_Intron|SLC8A3_uc001xma.2_Intron	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	605	Calx-beta 2.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TATTCCTCCTCATCTACTATT	0.428000													43	56					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634452	70634452	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:70634452G>A	uc001xly.2	-	2	1442	c.688C>T	c.(688-690)CAG>TAG	p.Q230*	SLC8A3_uc001xlw.2_Nonsense_Mutation_p.Q230*|SLC8A3_uc001xlx.2_Nonsense_Mutation_p.Q230*|SLC8A3_uc001xlz.2_Nonsense_Mutation_p.Q230*|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	230	Extracellular (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TCCCAAACCTGGACCACACCA	0.493000													22	40					0	0	1	0	0
ZNF410	57862	broad.mit.edu	37	14	74364873	74364873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:74364873C>T	uc001xoz.1	+	5	670	c.488C>T	c.(487-489)CCA>CTA	p.P163L	ZNF410_uc001xoy.1_RNA|ZNF410_uc010ary.1_RNA|ZNF410_uc010tuf.1_RNA|ZNF410_uc010tug.1_5'UTR|ZNF410_uc010tuh.1_Missense_Mutation_p.P90L|ZNF410_uc010tui.1_RNA|ZNF410_uc010arz.1_Missense_Mutation_p.P180L|ZNF410_uc001xpa.1_5'UTR|ZNF410_uc001xpb.1_Missense_Mutation_p.P163L|ZNF410_uc001xpc.1_Missense_Mutation_p.P110L|ZNF410_uc010tuj.1_5'UTR	NM_021188	NP_067011	Q86VK4	ZN410_HUMAN	zinc finger protein 410	163					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00369)		AGTAGCATTCCATGGTTCCTC	0.507000													80	119					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74825433	74825433	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:74825433G>A	uc001xpw.3	+	2	2138	c.1947G>A	c.(1945-1947)ACG>ACA	p.T649T		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	649					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		TCGCTACCACGAAGTTCAAGG	0.612000													43	55					0	0	1	0	0
TGFB3	7043	broad.mit.edu	37	14	76429816	76429816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:76429816C>T	uc001xsc.2	-	5	1625	c.769G>A	c.(769-771)GAT>AAT	p.D257N	TGFB3_uc001xsd.2_Missense_Mutation_p.D255N	NM_003239	NP_003230	P10600	TGFB3_HUMAN	transforming growth factor, beta 3 precursor	257					cell growth|cell-cell junction organization|detection of hypoxia|face morphogenesis|in utero embryonic development|induction of apoptosis|lung alveolus development|mammary gland development|menstrual cycle phase|negative regulation of cell proliferation|negative regulation of DNA replication|negative regulation of macrophage cytokine production|negative regulation of neuron apoptosis|odontogenesis|ossification involved in bone remodeling|palate development|platelet activation|platelet degranulation|positive regulation of bone mineralization|positive regulation of cell division|positive regulation of collagen biosynthetic process|positive regulation of DNA replication|positive regulation of epithelial to mesenchymal transition|positive regulation of filopodium assembly|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of protein secretion|positive regulation of SMAD protein import into nucleus|positive regulation of transcription from RNA polymerase II promoter|response to progesterone stimulus|salivary gland morphogenesis|transforming growth factor beta receptor signaling pathway	extracellular matrix|platelet alpha granule lumen	growth factor activity|identical protein binding|transforming growth factor beta binding|type I transforming growth factor beta receptor binding|type II transforming growth factor beta receptor binding			breast(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0169)		CCATGGTCATCCTCATTGTCC	0.562000													75	122					0	0	1	0	0
C14orf179	112752	broad.mit.edu	37	14	76548655	76548655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:76548655G>A	uc010asm.1	+	6	347	c.313G>A	c.(313-315)GAT>AAT	p.D105N	C14orf179_uc001xsf.2_RNA|C14orf179_uc010asl.1_Missense_Mutation_p.D105N|C14orf179_uc001xsg.2_Missense_Mutation_p.D110N|C14orf179_uc010tve.1_RNA	NM_001102564	NP_001096034	Q96FT9	IFT43_HUMAN	hypothetical protein LOC112752 isoform 2	105					cilium morphogenesis|intraflagellar retrograde transport						0				BRCA - Breast invasive adenocarcinoma(234;0.0199)		TATCATTCCGGATCTGGAGGA	0.483000													256	311					0	0	1	0	0
C14orf166B	145497	broad.mit.edu	37	14	77332334	77332334	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:77332334C>T	uc001xsx.2	+	12	1389	c.1275C>T	c.(1273-1275)ATC>ATT	p.I425I	C14orf166B_uc010asn.1_Silent_p.I185I|C14orf166B_uc001xsw.2_RNA	NM_194287	NP_919263	Q0VAA2	CN16B_HUMAN	hypothetical protein LOC145497	425											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0306)		AACACAAAATCACGATCGTGG	0.502000													6	15					0	0	1	0	0
STON2	85439	broad.mit.edu	37	14	81744849	81744849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:81744849G>A	uc010tvu.1	-	4	1007	c.806C>T	c.(805-807)TCA>TTA	p.S269L	STON2_uc001xvk.1_Missense_Mutation_p.S269L|STON2_uc010tvt.1_Missense_Mutation_p.S66L	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	269					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		TGATCCCATTGAATTATAAGG	0.453000													57	106					0	0	1	0	0
KCNK10	54207	broad.mit.edu	37	14	88652299	88652299	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:88652299G>A	uc001xwo.2	-	7	1654	c.1197C>T	c.(1195-1197)GTC>GTT	p.V399V	KCNK10_uc001xwm.2_Silent_p.V404V|KCNK10_uc001xwn.2_Silent_p.V404V	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	399	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						GGGCAGCAAAGACAGAGCGCT	0.677000													51	97					0	0	1	0	0
EML5	161436	broad.mit.edu	37	14	89148295	89148295	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:89148295G>A	uc001xxg.2	-	22	3249	c.3063C>T	c.(3061-3063)ACC>ACT	p.T1021T	EML5_uc001xxh.1_Silent_p.T160T	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	1021	WD 16.					cytoplasm|microtubule				ovary(3)	3						ATATTCTTAAGGTTTTATCAT	0.438000													52	80					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91763741	91763741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:91763741C>T	uc010aty.2	-	22	3973	c.3874G>A	c.(3874-3876)GAG>AAG	p.E1292K		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1292	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				CGGTTGAGCTCCAGCTGCGCG	0.607000													22	26					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91766381	91766381	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:91766381C>T	uc010aty.2	-	21	3768	c.3669G>A	c.(3667-3669)CTG>CTA	p.L1223L		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1223	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				CCCGCTCCTCCAGCTCCGCCT	0.637000													12	23					0	0	1	0	0
CLMN	79789	broad.mit.edu	37	14	95679709	95679709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:95679709G>A	uc001yef.2	-	6	571	c.455C>T	c.(454-456)CCA>CTA	p.P152L		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	152	Actin-binding.					integral to membrane	actin binding				0				Epithelial(152;0.193)		GCTGGAAGATGGAGAGTTTCT	0.557000													40	63					0	0	1	0	0
TCL1A	8115	broad.mit.edu	37	14	96178727	96178727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:96178727C>T	uc001yfc.3	-	2	257	c.127G>A	c.(127-129)GAT>AAT	p.D43N	TCL1A_uc001yfb.3_Missense_Mutation_p.D43N	NM_001098725	NP_001092195	P56279	TCL1A_HUMAN	T-cell leukemia/lymphoma 1A	43					multicellular organismal development	endoplasmic reticulum|microsome				lung(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		TGTAACCTATCCTTTATCTGA	0.572000			T	TRA@	T-CLL								34	52					0	0	1	0	0
TCL1A	8115	broad.mit.edu	37	14	96178734	96178734	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:96178734C>T	uc001yfc.3	-	2	251	c.121_splice	c.e2-1	p.I41_splice	TCL1A_uc001yfb.3_Splice_Site_p.I41_splice	NM_001098725	NP_001092195	P56279	TCL1A_HUMAN	T-cell leukemia/lymphoma 1A						multicellular organismal development	endoplasmic reticulum|microsome				lung(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		TATCCTTTATCTGAGGAGAAG	0.577000			T	TRA@	T-CLL								35	34					0	0	1	0	0
KIF26A	26153	broad.mit.edu	37	14	104642884	104642884	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:104642884G>A	uc001yos.3	+	12	3759	c.3759G>A	c.(3757-3759)CAG>CAA	p.Q1253Q		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	1253					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		GTGATACCCAGGCAGCTTCTG	0.692000													54	63					0	0	1	0	0
INF2	64423	broad.mit.edu	37	14	105176039	105176039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:105176039C>T	uc001ypb.2	+	12	2278	c.2135C>T	c.(2134-2136)CCC>CTC	p.P712L	INF2_uc010tyi.1_Missense_Mutation_p.P712L|INF2_uc001ypc.2_Missense_Mutation_p.P712L|INF2_uc010awz.1_RNA	NM_022489	NP_071934	Q27J81	INF2_HUMAN	inverted formin 2 isoform 1	712	FH2.				actin cytoskeleton organization	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm	actin binding|Rho GTPase binding				0		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00188)|OV - Ovarian serous cystadenocarcinoma(23;0.0191)|Epithelial(46;0.047)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.176)		CTGGCCATTCCCTGGTGAGCA	0.652000													72	96					0	0	1	0	0
PACS2	23241	broad.mit.edu	37	14	105847412	105847412	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:105847412A>G	uc001yqt.2	+	12	1419	c.1244A>G	c.(1243-1245)GAG>GGG	p.E415G	PACS2_uc001yqs.2_Missense_Mutation_p.E340G|PACS2_uc001yqv.2_Missense_Mutation_p.E415G|PACS2_uc001yqu.2_Missense_Mutation_p.E415G	NM_015197	NP_056012	Q86VP3	PACS2_HUMAN	phosphofurin acidic cluster sorting protein 2	415					apoptosis|interspecies interaction between organisms	endoplasmic reticulum lumen|mitochondrion				pancreas(1)	1		all_cancers(154;0.0351)|all_epithelial(191;0.153)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.0145)|Epithelial(46;0.036)	Epithelial(152;0.138)		ACCAAGACAGAGTCCCTTGTC	0.697000													26	28					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106110900	106110900	+	RNA	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:106110900G>A	uc010tyt.1	-	3640		c.60861C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_RNA					Parts of antibodies, mostly variable regions.												0						TCTGGGTGCCGAAGTTGCTGG	0.617000													66	256					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106311934	106311934	+	RNA	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:106311934C>T	uc010tyt.1	-	3608		c.56989G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Silent_p.L40L|uc001ysk.1_Silent_p.L40L|uc001ysl.1_Silent_p.L40L|uc001ysm.1_5'UTR|uc001ysn.1_5'UTR|uc001yso.1_5'UTR					Parts of antibodies, mostly variable regions.												0						TCAAGCATGCCAGGACCACAG	0.557000													61	77					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20644259	20644259	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:20644259C>T	uc001ytg.2	-	22	3324	c.2615G>A	c.(2614-2616)TGG>TAG	p.W872*	uc010tyx.1_RNA|uc001yth.3_Nonsense_Mutation_p.W872*					RecName: Full=Putative HERC2-like protein 3;																		GAGCCCATTCCACTGAGTCAG	0.607000													37	47					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921187	24921187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:24921187G>A	uc001ywo.2	+	1	647	c.173G>A	c.(172-174)AGG>AAG	p.R58K		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	58					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GCCCGTCGCAGGCCTTCAGCA	0.746000													34	48					0	0	1	0	0
ATP10A	57194	broad.mit.edu	37	15	25925026	25925026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:25925026G>A	uc010ayu.2	-	21	4068	c.3962C>T	c.(3961-3963)CCC>CTC	p.P1321L		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	1321	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		GGTCTCTTTGGGAGCACTGCA	0.572000													85	114					0	0	1	0	0
ATP10A	57194	broad.mit.edu	37	15	26026220	26026220	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:26026220C>T	uc010ayu.2	-	2	706	c.600G>A	c.(598-600)CTG>CTA	p.L200L		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	200	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		TCTCTCCATCCAGGTTGGCGG	0.597000													76	96					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33916138	33916138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:33916138G>A	uc001zhi.2	+	20	2558	c.2488G>A	c.(2488-2490)GAT>AAT	p.D830N	RYR3_uc010bar.2_Missense_Mutation_p.D830N	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	830	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		ATATAAACGTGATGCTGATGG	0.478000													64	146					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34105144	34105144	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:34105144G>A	uc001zhi.2	+	73	10408	c.10338G>A	c.(10336-10338)AAG>AAA	p.K3446K	RYR3_uc010bar.2_Silent_p.K3441K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3446					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		ATCCGGAAAAGACAGTGGAGC	0.483000													30	56					0	0	1	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40241392	40241392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:40241392C>T	uc001zkm.1	+	4	486	c.436C>T	c.(436-438)CAT>TAT	p.H146Y	EIF2AK4_uc001zkl.2_Missense_Mutation_p.H146Y	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	146					translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		CAAGTCTTTTCATGAAGAAAT	0.498000													96	99					0	0	1	0	0
TYRO3	7301	broad.mit.edu	37	15	41863308	41863308	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:41863308T>G	uc001zof.1	+	13	1876	c.1652T>G	c.(1651-1653)ATG>AGG	p.M551R		NM_006293	NP_006284	Q06418	TYRO3_HUMAN	TYRO3 protein tyrosine kinase precursor	551	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			ovary(3)|lung(2)|central_nervous_system(1)	6		all_cancers(109;7.33e-15)|all_epithelial(112;2.8e-12)|Lung NSC(122;3.48e-08)|all_lung(180;1.71e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.31e-18)|GBM - Glioblastoma multiforme(113;9.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.117)		GCTGTGAAGATGCTGAAAGGT	0.542000													104	105					0	0	1	0	0
MGA	23269	broad.mit.edu	37	15	42058862	42058862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:42058862G>A	uc010ucy.1	+	24	8763	c.8582G>A	c.(8581-8583)CGG>CAG	p.R2861Q	MGA_uc010ucz.1_Missense_Mutation_p.R2652Q	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	2822						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		GATGCTCGGCGGGCTTTTATT	0.468000													82	92					0	0	1	0	0
SLC28A2	9153	broad.mit.edu	37	15	45555371	45555371	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:45555371G>A	uc001zva.2	+	5	440	c.375G>A	c.(373-375)AAG>AAA	p.K125K		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	125					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity	p.K125N(1)		ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		TTTTGAAAAAGCTCCTGGGCA	0.458000													23	36					0	0	1	0	0
SLC30A4	7782	broad.mit.edu	37	15	45779808	45779808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:45779808G>A	uc001zvj.2	-	6	1229	c.917C>T	c.(916-918)CCC>CTC	p.P306L		NM_013309	NP_037441	O14863	ZNT4_HUMAN	solute carrier family 30 (zinc transporter),	306	Vacuolar (Potential).				regulation of sequestering of zinc ion|response to toxin	endosome membrane|integral to membrane|late endosome	zinc ion transmembrane transporter activity				0		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.58e-16)|GBM - Glioblastoma multiforme(94;2.15e-06)		TGTACAGATGGGGTCAGCAAT	0.318000													68	63					0	0	1	0	0
SLC27A2	11001	broad.mit.edu	37	15	50521197	50521197	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:50521197G>A	uc001zxw.2	+	8	1745	c.1513G>A	c.(1513-1515)GAT>AAT	p.D505N	SLC27A2_uc010bes.2_Missense_Mutation_p.D452N|SLC27A2_uc001zxx.2_Missense_Mutation_p.D270N	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	505	Cytoplasmic (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		TGGACTGGTTGATTTTGTCCA	0.428000													38	28					0	0	1	0	0
MYO5C	55930	broad.mit.edu	37	15	52564870	52564870	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:52564870C>T	uc010bff.2	-	6	794	c.657G>A	c.(655-657)GGG>GGA	p.G219G	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA|MYO5C_uc010ugc.1_Silent_p.G182G	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	219	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		CTGTGTATTTCCCAAACCGAC	0.363000													19	47					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57823921	57823921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:57823921G>A	uc002aeg.2	+	14	3311	c.3235G>A	c.(3235-3237)GAA>AAA	p.E1079K	CGNL1_uc010bfw.2_Missense_Mutation_p.E1079K	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	1079	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		GGAACTGGAAGAAGAGAGAAA	0.453000													97	95					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57837893	57837893	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:57837893G>A	uc002aeg.2	+	17	3680	c.3604G>A	c.(3604-3606)GAC>AAC	p.D1202N	CGNL1_uc010bfw.2_Missense_Mutation_p.D1202N	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	1202	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		TGATCAGAAGGACCAGGTGGG	0.582000													11	16					0	0	1	0	0
GCOM1	145781	broad.mit.edu	37	15	57929945	57929945	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:57929945G>T	uc002aei.2	+	9	1105	c.986G>T	c.(985-987)GGG>GTG	p.G329V	GCOM1_uc002aej.2_Missense_Mutation_p.G329V|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Missense_Mutation_p.G329V|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.G329V|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	329	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						GAAATGTCTGGGGAGTTAACT	0.378000													17	16					6.94344e-10	6.96918e-10	1	1	0
CLPX	10845	broad.mit.edu	37	15	65448155	65448155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:65448155G>A	uc002aom.2	-	10	1258	c.1186C>T	c.(1186-1188)CCA>TCA	p.P396S	CLPX_uc010uiu.1_RNA	NM_006660	NP_006651	O76031	CLPX_HUMAN	ClpX caseinolytic protease X homolog precursor	396					protein folding|proteolysis involved in cellular protein catabolic process	mitochondrial endopeptidase Clp complex|mitochondrial inner membrane|mitochondrial nucleoid	ATP binding|ATPase activity|metal ion binding|peptidase activator activity|unfolded protein binding				0						TTCTTTTCTGGAACATTGACT	0.338000													56	83					0	0	1	0	0
CILP	8483	broad.mit.edu	37	15	65490650	65490650	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:65490650G>A	uc002aon.2	-	9	2155	c.1974C>T	c.(1972-1974)GGC>GGT	p.G658G		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	658					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						CAGAGAACATGCCATACGTCC	0.532000													56	71					0	0	1	0	0
DENND4A	10260	broad.mit.edu	37	15	65983580	65983580	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:65983580T>A	uc002aph.2	-	22	3598	c.3220A>T	c.(3220-3222)AGC>TGC	p.S1074C	DENND4A_uc002api.2_Missense_Mutation_p.S1117C|DENND4A_uc002apj.3_Missense_Mutation_p.S1074C	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	1074					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GGTCTCGTGCTTTTTGAGATA	0.368000													11	11					0	0	1	0	0
MEGF11	84465	broad.mit.edu	37	15	66386797	66386797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:66386797C>T	uc002apm.2	-	5	478	c.337G>A	c.(337-339)GTT>ATT	p.V113I	MEGF11_uc002apl.2_Missense_Mutation_p.V38I|MEGF11_uc002apn.1_Missense_Mutation_p.V113I	NM_032445	NP_115821	A6BM72	MEG11_HUMAN	multiple EGF-like-domains 11 precursor	113	EGF-like 1.					basolateral plasma membrane|integral to membrane				pancreas(1)	1						TCCGGGGAAACGCAGCGGCCG	0.632000													2	2					0	0	1	0	0
NOX5	79400	broad.mit.edu	37	15	69335086	69335086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:69335086C>T	uc002ars.1	+	10	1608	c.1588C>T	c.(1588-1590)CGT>TGT	p.R530C	NOX5_uc002arp.1_Missense_Mutation_p.R512C|NOX5_uc002arq.1_Missense_Mutation_p.R484C|NOX5_uc010bid.1_Missense_Mutation_p.R495C|NOX5_uc002arr.1_Missense_Mutation_p.R502C|NOX5_uc010bie.1_Missense_Mutation_p.R330C|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	530	FAD-binding FR-type.|Cytoplasmic (Potential).|C-terminal catalytic region.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						CCCACTGGGCCGTGGTTCTAA	0.537000													21	62					0	0	1	0	0
LRRC49	54839	broad.mit.edu	37	15	71188216	71188216	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:71188216C>T	uc002asw.2	+	3	381	c.134C>T	c.(133-135)TCG>TTG	p.S45L	LRRC49_uc002asu.2_Missense_Mutation_p.S35L|LRRC49_uc002asx.2_5'UTR|LRRC49_uc010ukf.1_Missense_Mutation_p.S50L|LRRC49_uc002asy.2_5'UTR|LRRC49_uc002asz.2_5'UTR	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	45						cytoplasm|microtubule				ovary(1)	1						AAAGACACATCGTCATTCCCC	0.323000													16	63					0	0	1	0	0
PTPN9	5780	broad.mit.edu	37	15	75798248	75798248	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:75798248A>G	uc002bal.2	-	7	1244	c.736T>C	c.(736-738)TGG>CGG	p.W246R		NM_002833	NP_002824	P43378	PTN9_HUMAN	protein tyrosine phosphatase, non-receptor type	246						cytoplasmic part	non-membrane spanning protein tyrosine phosphatase activity|protein binding			lung(1)|skin(1)	2						TGGAAATTCCAAGTGGCGAGA	0.512000													8	63					0	0	1	0	0
ACSBG1	23205	broad.mit.edu	37	15	78485846	78485846	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:78485846A>G	uc002bdh.2	-	5	719	c.663_splice	c.e5+1	p.K221_splice	ACSBG1_uc010umw.1_Splice_Site_p.K217_splice|ACSBG1_uc010umx.1_Intron|ACSBG1_uc010umy.1_Splice_Site_p.K114_splice	NM_015162	NP_055977	Q96GR2	ACBG1_HUMAN	lipidosin						long-chain fatty acid metabolic process|myelination|very long-chain fatty acid metabolic process	cytoplasmic membrane-bounded vesicle|endoplasmic reticulum|microsome	ATP binding|long-chain fatty acid-CoA ligase activity|very long-chain fatty acid-CoA ligase activity			ovary(1)	1						TCTTCCCCAAACCTTCAGGAT	0.582000													70	67					0	0	1	0	0
KLHL25	64410	broad.mit.edu	37	15	86312415	86312415	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:86312415C>T	uc002bly.2	-	2	830	c.627G>A	c.(625-627)GTG>GTA	p.V209V		NM_022480	NP_071925	Q9H0H3	ENC2_HUMAN	BTB/POZ KELCH domain protein	209						cytoplasm				ovary(2)	2						CCTCGAAGACCACCCGCTCGT	0.627000													38	30					0	0	1	0	0
IGF1R	3480	broad.mit.edu	37	15	99459265	99459265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:99459265C>T	uc002bul.2	+	9	1951	c.1901C>T	c.(1900-1902)CCC>CTC	p.P634L	IGF1R_uc010urq.1_Missense_Mutation_p.P634L|IGF1R_uc010bon.2_Missense_Mutation_p.P634L|IGF1R_uc010urr.1_Missense_Mutation_p.P84L	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	634	Fibronectin type-III 2.				anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	TGGAACCCTCCCTCTCTGCCC	0.517000													102	83					0	0	1	0	0
SYNM	23336	broad.mit.edu	37	15	99670775	99670775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:99670775G>A	uc002bup.2	+	6	2330	c.2210G>A	c.(2209-2211)AGG>AAG	p.R737K	SYNM_uc002buo.2_Missense_Mutation_p.R737K|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	737	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						CTGAAAGGGAGGGAGGGGAGA	0.537000													19	6					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	102292770	102292770	+	Nonsense_Mutation	SNP	C	T	T	rs149751844	by1000genomes	TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:102292770C>T	uc010usj.1	+	4	417	c.358C>T	c.(358-360)CGA>TGA	p.R120*	uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		AGCGGCGCGACGAGATGCTGC	0.597000													3	28					0	0	1	0	0
OR4F15	390649	broad.mit.edu	37	15	102359037	102359037	+	Silent	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:102359037T>A	uc010uts.1	+	1	648	c.648T>A	c.(646-648)ATT>ATA	p.I216I		NM_001001674	NP_001001674	Q8NGB8	O4F15_HUMAN	olfactory receptor, family 4, subfamily F,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			TGCTGGTAATTTCCTACATCT	0.478000													47	113					0	0	1	0	0
WASH3P	374666	broad.mit.edu	37	15	102515335	102515335	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr15:102515335C>G	uc002cdi.2	+	9	1979	c.559C>G	c.(559-561)CTG>GTG	p.L187V	WASH3P_uc002cdl.2_Missense_Mutation_p.L187V|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.L187V|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						GGAGCGAAAGCTGGAGAAGAA	0.652000													7	52					0	0	1	0	0
SOLH	6650	broad.mit.edu	37	16	602523	602524	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:602523_602524CC>TT	uc002chi.2	+	11	3093_3094	c.2730_2731CC>TT	c.(2728-2733)GCCCCC>GCTTCC	p.P911S	SOLH_uc002chj.2_5'UTR	NM_005632	NP_005623	O75808	CAN15_HUMAN	small optic lobes	911					proteolysis	intracellular	calcium-dependent cysteine-type endopeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)	2		Hepatocellular(780;0.00335)				GCACCCCTGCCCCCCAGGGTAC	0.708000													12	13					0	0	1	0	0
KCTD5	54442	broad.mit.edu	37	16	2757318	2757318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:2757318C>T	uc002crd.2	+	6	750	c.695C>T	c.(694-696)TCA>TTA	p.S232L		NM_018992	NP_061865	Q9NXV2	KCTD5_HUMAN	potassium channel tetramerisation domain	232					interspecies interaction between organisms	cytosol|nucleus|voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity				0						GAACGAGGCTCAAGGATGTGA	0.473000													40	60					0	0	1	0	0
PRSS41	360226	broad.mit.edu	37	16	2854974	2854974	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:2854974C>T	uc010uwi.1	+	5	798	c.798C>T	c.(796-798)ATC>ATT	p.I266I		NM_001135086	NP_001128558	Q7RTY9	PRS41_HUMAN	testis-specific serine protease 1 precursor	266	Peptidase S1.				proteolysis	anchored to membrane|plasma membrane	serine-type endopeptidase activity				0						AGGTTGGAATCGTGAGCTGGG	0.582000													9	9					0	0	1	0	0
PRSS21	10942	broad.mit.edu	37	16	2870993	2870993	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:2870993C>T	uc002crt.2	+	5	694	c.588C>T	c.(586-588)GTC>GTT	p.V196V	PRSS21_uc002crs.2_Silent_p.V194V|PRSS21_uc002crr.2_Silent_p.V196V	NM_006799	NP_006790	Q9Y6M0	TEST_HUMAN	testisin isoform 1	196	Peptidase S1.				proteolysis	anchored to membrane|cytoplasm|membrane fraction|plasma membrane	serine-type endopeptidase activity			ovary(1)|skin(1)	2						AAGTTCAGGTCGCCATCATAA	0.547000													236	304					0	0	1	0	0
OR1F1	4992	broad.mit.edu	37	16	3255167	3255167	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:3255167G>A	uc010uwu.1	+	1	921	c.921G>A	c.(919-921)AGG>AGA	p.R307R		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TAGTTGGCAGGGTGGTGTTTT	0.383000													34	58					0	0	1	0	0
HMOX2	3163	broad.mit.edu	37	16	4557778	4557778	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:4557778A>G	uc010bts.2	+	4	440	c.269A>G	c.(268-270)GAC>GGC	p.D90G	HMOX2_uc002cwr.3_Missense_Mutation_p.D90G|HMOX2_uc002cwq.3_Missense_Mutation_p.D90G|HMOX2_uc002cws.3_Missense_Mutation_p.D144G|HMOX2_uc010btt.2_Missense_Mutation_p.D90G|HMOX2_uc002cwt.2_Missense_Mutation_p.D90G	NM_001127206	NP_001120678	P30519	HMOX2_HUMAN	heme oxygenase (decyclizing) 2	90					cellular iron ion homeostasis|heme catabolic process|heme oxidation|response to hypoxia|transmembrane transport	endoplasmic reticulum membrane|microsome|plasma membrane	electron carrier activity|heme oxygenase (decyclizing) activity|metal ion binding|protein binding				0					NADH(DB00157)	CGCAACAAGGACCATCCAGCC	0.562000													40	74					0	0	1	0	0
A2BP1	54715	broad.mit.edu	37	16	7680645	7680645	+	Silent	SNP	C	T	T	rs147636119	by1000genomes	TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:7680645C>T	uc002cys.2	+	11	1705	c.717C>T	c.(715-717)TCC>TCT	p.S239S	A2BP1_uc010buf.1_Silent_p.S239S|A2BP1_uc002cyr.1_Silent_p.S238S|A2BP1_uc002cyt.2_Intron|A2BP1_uc010uxz.1_Silent_p.S282S|A2BP1_uc010uya.1_Silent_p.S196S|A2BP1_uc002cyv.1_Silent_p.S239S|A2BP1_uc010uyb.1_Silent_p.S239S|A2BP1_uc002cyw.2_Silent_p.S259S|A2BP1_uc002cyy.2_Silent_p.S259S|A2BP1_uc002cyx.2_Silent_p.S259S|A2BP1_uc010uyc.1_Intron	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	239					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		AGGGATCTTCCATGTACAGTG	0.483000													49	67					0	0	1	0	0
NOMO1	23420	broad.mit.edu	37	16	14947797	14947797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:14947797C>T	uc002dcv.2	+	9	943	c.877C>T	c.(877-879)CCG>TCG	p.P293S		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	293	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						CTTCCAGATTCCGTTCTATCG	0.438000													121	274					0	0	1	0	0
NOMO1	23420	broad.mit.edu	37	16	14951449	14951449	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:14951449T>C	uc002dcv.2	+	11	1223	c.1157T>C	c.(1156-1158)TTT>TCT	p.F386S		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	386	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						CACCTCTACTTTGAAACGGTC	0.438000													86	212					0	0	1	0	0
ABCC6	368	broad.mit.edu	37	16	16296029	16296029	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:16296029G>A	uc002den.3	-	9	1042	c.1005C>T	c.(1003-1005)TTC>TTT	p.F335F	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Silent_p.F347F	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	335	Extracellular (By similarity).|ABC transmembrane type-1 1.				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		TAAACTCCAGGAAAAGGCTTG	0.567000													9	26					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20554316	20554316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:20554316C>T	uc002dhj.3	-	13	1639	c.1429G>A	c.(1429-1431)GAG>AAG	p.E477K	ACSM2B_uc002dhk.3_Missense_Mutation_p.E477K|ACSM2B_uc010bwf.1_Missense_Mutation_p.E477K	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	477					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TTCTCTACCTCCGAGGGTCCA	0.572000													62	97					0	0	1	0	0
ACSM1	116285	broad.mit.edu	37	16	20696554	20696554	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:20696554G>A	uc002dhm.1	-	2	432	c.364C>T	c.(364-366)CCT>TCT	p.P122S	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.P122S	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	122					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CACCACTCAGGAACTCGAGGC	0.587000													57	100					0	0	1	0	0
ACSM3	6296	broad.mit.edu	37	16	20803563	20803563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:20803563G>A	uc002dhr.2	+	12	1647	c.1460G>A	c.(1459-1461)CGA>CAA	p.R487Q	ACSM3_uc010vba.1_Missense_Mutation_p.R516Q|ERI2_uc002dhs.2_Intron	NM_005622	NP_005613	Q53FZ2	ACSM3_HUMAN	SA hypertension-associated homolog isoform 1	487					regulation of blood pressure	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			ovary(1)	1						TCTAGCTATCGAATTGGACCA	0.448000													253	367					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20955866	20955866	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:20955866G>A	uc010vbe.1	-	58	11463	c.11463C>T	c.(11461-11463)GTC>GTT	p.V3821V	DNAH3_uc010vbd.1_Silent_p.V1256V	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3821					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GGGTCAGCAGGACCCCCTCAA	0.557000													65	96					0	0	1	0	0
SCNN1B	6338	broad.mit.edu	37	16	23364224	23364224	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:23364224G>A	uc002dln.2	+	3	590	c.414G>A	c.(412-414)AGG>AGA	p.R138R		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	138	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	ATGCCACCAGGAACCTGAACT	0.517000													58	92					0	0	1	0	0
JMJD5	79831	broad.mit.edu	37	16	27226198	27226198	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:27226198T>G	uc002doh.2	+	4	849	c.667T>G	c.(667-669)TTG>GTG	p.L223V	JMJD5_uc010vcn.1_Missense_Mutation_p.L261V|JMJD5_uc010bxw.2_Intron|JMJD5_uc010bxx.2_RNA	NM_024773	NP_079049	Q8N371	KDM8_HUMAN	jumonji domain containing 5 isoform 2	223					G2/M transition of mitotic cell cycle|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|histone demethylase activity (H3-K36 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(2)|upper_aerodigestive_tract(1)	3						TTCTGCTAGTTTGGAGTATAT	0.353000													91	119					0	0	1	0	0
PRRT2	112476	broad.mit.edu	37	16	29824868	29824868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:29824868G>A	uc002due.3	+	2	794	c.493G>A	c.(493-495)GAC>AAC	p.D165N	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|uc002duc.1_5'Flank|PRRT2_uc002dud.2_Missense_Mutation_p.D165N|PRRT2_uc002duf.1_Missense_Mutation_p.D165N|C16orf53_uc002dug.3_5'Flank	NM_145239	NP_660282	Q7Z6L0	PRRT2_HUMAN	proline-rich transmembrane protein 2	165	Extracellular (Potential).|Pro-rich.				response to biotic stimulus	integral to membrane					0						TACCCAGGAGGACCCCACCCC	0.642000													26	44					0	0	1	0	0
TAOK2	9344	broad.mit.edu	37	16	29998716	29998716	+	Silent	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:29998716T>A	uc002dva.1	+	16	3906	c.3123T>A	c.(3121-3123)GTT>GTA	p.V1041V	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Intron|TAOK2_uc002dvc.1_Intron|TAOK2_uc010bzm.1_Silent_p.V1048V|TAOK2_uc002dvd.1_Silent_p.V868V	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	1041	Leu-rich.				actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						TCATGGGTGTTCCCCTGGGCC	0.687000													14	16					0	0	1	0	0
ZNF668	79759	broad.mit.edu	37	16	31072478	31072478	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:31072478C>A	uc010caf.2	-	3	2128	c.1771G>T	c.(1771-1773)GAA>TAA	p.E591*	ZNF668_uc002eao.2_Nonsense_Mutation_p.E591*	NM_024706	NP_078982	Q96K58	ZN668_HUMAN	zinc finger protein 668	591	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(4)	4						TGGGTGCGTTCATGCTTGCGC	0.647000													76	94					1.26005e-42	1.27417e-42	1	1	0
ZNF646	9726	broad.mit.edu	37	16	31091618	31091618	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:31091618C>T	uc002eap.2	+	2	4262	c.3973C>T	c.(3973-3975)CAG>TAG	p.Q1325*		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	1325					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						CGAGACGGGCCAGTACAGCTG	0.692000													28	22					0	0	1	0	0
ARMC5	79798	broad.mit.edu	37	16	31471028	31471028	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:31471028C>T	uc002ecc.2	+	1	712	c.183C>T	c.(181-183)TTC>TTT	p.F61F	ARMC5_uc010vfn.1_Silent_p.F156F|ARMC5_uc010vfo.1_Silent_p.F93F|ARMC5_uc002eca.3_Silent_p.F61F|ARMC5_uc010vfp.1_Silent_p.F61F|ARMC5_uc002ecb.2_Silent_p.F61F	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	61							binding			pancreas(1)	1						TCGAGCGCTTCCGGGCACGCG	0.746000													18	15					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49671911	49671911	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:49671911C>T	uc002efs.2	-	5	1450	c.1152G>A	c.(1150-1152)CCG>CCA	p.P384P	ZNF423_uc010vgn.1_Silent_p.P267P	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	384					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				AGGTGGAGTCCGGGGTGGAGC	0.652000													29	50					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51171035	51171035	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:51171035G>A	uc010vgs.1	-	3	3994	c.3963C>T	c.(3961-3963)ATC>ATT	p.I1321I	SALL1_uc010vgr.1_Silent_p.I1224I|SALL1_uc010cbv.2_Silent_p.I173I	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1321					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AACTCGTGACGATCTCCTTGC	0.592000													43	61					0	0	1	0	0
TOX3	27324	broad.mit.edu	37	16	52473848	52473848	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:52473848G>A	uc002egw.2	-	7	1191	c.1020C>T	c.(1018-1020)ATC>ATT	p.I340I	TOX3_uc010vgt.1_Silent_p.I335I|TOX3_uc010vgu.1_Silent_p.I340I	NM_001080430	NP_001073899	O15405	TOX3_HUMAN	TOX high mobility group box family member 3	340					apoptosis|negative regulation of neuron apoptosis|positive regulation of anti-apoptosis|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|estrogen response element binding|phosphoprotein binding|protein homodimerization activity				0						GAACAGAACGGATGGTCTGGG	0.453000													31	42					0	0	1	0	0
PRSS54	221191	broad.mit.edu	37	16	58314192	58314192	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:58314192A>C	uc002enf.2	-	7	1519	c.1124T>G	c.(1123-1125)TTG>TGG	p.L375W	PRSS54_uc002eng.2_Missense_Mutation_p.L375W|PRSS54_uc010vie.1_Missense_Mutation_p.L276W|CCDC113_uc002ene.2_3'UTR|CCDC113_uc010vid.1_3'UTR	NM_001080492	NP_001073961	Q6PEW0	PRS54_HUMAN	plasma kallikrein-like protein 4 precursor	375					proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GGGCTGATACAACCTGTTCTG	0.478000													44	70					0	0	1	0	0
HSD11B2	3291	broad.mit.edu	37	16	67470637	67470637	+	Missense_Mutation	SNP	G	A	A	rs147758873		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:67470637G>A	uc002etd.2	+	5	1065	c.949G>A	c.(949-951)GAC>AAC	p.D317N		NM_000196	NP_000187	P80365	DHI2_HUMAN	hydroxysteroid (11-beta) dehydrogenase 2	317					glucocorticoid biosynthetic process	endoplasmic reticulum|microsome					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0401)|Epithelial(162;0.0891)	NADH(DB00157)	GGCCATGTCCGACCTCACCCC	0.632000													96	161					0	0	1	0	0
TAT	6898	broad.mit.edu	37	16	71604618	71604618	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:71604618G>A	uc002fap.2	-	8	975	c.876C>T	c.(874-876)ATC>ATT	p.I292I		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	292					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	CATGAATGAGGATCCAGCCCA	0.493000													57	65					0	0	1	0	0
PHLPP2	23035	broad.mit.edu	37	16	71710379	71710379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:71710379G>A	uc002fax.2	-	8	1448	c.1442C>T	c.(1441-1443)TCC>TTC	p.S481F	PHLPP2_uc002fav.2_RNA|PHLPP2_uc010cgf.2_Missense_Mutation_p.S481F	NM_015020	NP_055835	Q6ZVD8	PHLP2_HUMAN	PH domain and leucine rich repeat protein	481	LRR 11.					cytoplasm|membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)|central_nervous_system(1)	2						GGTCCGAAGGGAAAAGCCACT	0.498000													35	50					0	0	1	0	0
PMFBP1	83449	broad.mit.edu	37	16	72184710	72184710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:72184710C>T	uc002fcc.3	-	5	605	c.433G>A	c.(433-435)GAA>AAA	p.E145K	PMFBP1_uc002fcd.2_Missense_Mutation_p.E145K|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_5'UTR	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	145										ovary(2)	2		Ovarian(137;0.179)				TTTCCCATTTCCTCCTCATAG	0.507000													40	72					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72828641	72828641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:72828641G>A	uc002fck.2	-	9	8613	c.7940C>T	c.(7939-7941)ACC>ATC	p.T2647I	ZFHX3_uc002fcl.2_Missense_Mutation_p.T1733I	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2647	Homeobox 3.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CGGTGTGATGGTTGTTCTCAA	0.502000													221	297					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76461483	76461483	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:76461483C>T	uc002feu.1	+	6	910	c.525C>T	c.(523-525)TTC>TTT	p.F175F	CNTNAP4_uc002fev.1_Silent_p.F87F|CNTNAP4_uc010chb.1_Silent_p.F150F|CNTNAP4_uc002fex.1_Silent_p.F178F|CNTNAP4_uc002few.2_Silent_p.F150F	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	175	Extracellular (Potential).|F5/8 type C.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TCGAAGTGTTCGGATGTGCAT	0.393000													18	30					0	0	1	0	0
VAT1L	57687	broad.mit.edu	37	16	77910323	77910323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:77910323G>A	uc002ffg.1	+	5	876	c.779G>A	c.(778-780)GGA>GAA	p.G260E		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	260							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						GACAACACTGGAAAAGGTCTC	0.463000													95	146					0	0	1	0	0
CDYL2	124359	broad.mit.edu	37	16	80654688	80654688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:80654688C>T	uc002ffs.2	-	4	1084	c.979G>A	c.(979-981)GAG>AAG	p.E327K		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	327						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						CGAGTGCTCTCCTTTCGCCGG	0.498000													41	67					0	0	1	0	0
PLCG2	5336	broad.mit.edu	37	16	81934290	81934290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:81934290G>A	uc002fgt.2	+	14	1419	c.1267G>A	c.(1267-1269)GAA>AAA	p.E423K	PLCG2_uc010chg.1_Missense_Mutation_p.E423K	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	423	PI-PLC X-box.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						GGCCTTCAAGGAAGTATTTGG	0.607000													34	68					0	0	1	0	0
OR1A1	8383	broad.mit.edu	37	17	3119589	3119589	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:3119589C>T	uc010vrc.1	+	1	675	c.675C>T	c.(673-675)TTC>TTT	p.F225F		NM_014565	NP_055380	Q9P1Q5	OR1A1_HUMAN	olfactory receptor, family 1, subfamily A,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CCACAGTCTTCCAGGTTCCTT	0.478000													119	152					0	0	1	0	0
MINK1	50488	broad.mit.edu	37	17	4789836	4789836	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:4789836C>T	uc010vsl.1	+	10	1060	c.864C>T	c.(862-864)TTC>TTT	p.F288F	MINK1_uc010vsk.1_Silent_p.F288F|MINK1_uc010vsm.1_Silent_p.F288F|MINK1_uc010vsn.1_Silent_p.F288F|MINK1_uc010vso.1_Silent_p.F233F|MINK1_uc010vsp.1_5'UTR	NM_153827	NP_722549	Q8N4C8	MINK1_HUMAN	misshapen-like kinase 1 isoform 3	288	Protein kinase.				JNK cascade	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)|skin(1)	6						AGTTTCCCTTCATCCGGGACC	0.557000													81	108					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5462406	5462406	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:5462406T>A	uc002gci.2	-	4	2165	c.1610A>T	c.(1609-1611)AAG>ATG	p.K537M	NLRP1_uc002gcg.1_Missense_Mutation_p.K537M|NLRP1_uc002gck.2_Missense_Mutation_p.K537M|NLRP1_uc002gcj.2_Missense_Mutation_p.K537M|NLRP1_uc002gcl.2_Missense_Mutation_p.K537M|NLRP1_uc002gch.3_Missense_Mutation_p.K537M|NLRP1_uc010clh.2_Missense_Mutation_p.K537M	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	537	NACHT.				defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				GAGTTTTTCCTTCCGCTTCAT	0.542000													107	130					0	0	1	0	0
USP43	124739	broad.mit.edu	37	17	9632212	9632212	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:9632212C>T	uc010cod.2	+	15	3277	c.3277C>T	c.(3277-3279)CCA>TCA	p.P1093S	USP43_uc002gma.3_Missense_Mutation_p.P782S|USP43_uc010vva.1_Missense_Mutation_p.P1088S|USP43_uc010coe.2_Missense_Mutation_p.P890S|USP43_uc002gmc.3_Missense_Mutation_p.P605S	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	1093					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						AAGGACTGTTCCAGGGGAGCA	0.547000													51	74					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10298450	10298450	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:10298450C>T	uc002gmm.2	-	34	5057	c.4962G>A	c.(4960-4962)AAG>AAA	p.K1654K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1654	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						ACCCGTTTACCTTCAGGATTC	0.443000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				139	199					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10300158	10300158	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:10300158A>C	uc002gmm.2	-	31	4419	c.4324T>G	c.(4324-4326)TGT>GGT	p.C1442G	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1442	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						AGGGCTGCACAGGCTGCATTA	0.468000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				37	63					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10304939	10304939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:10304939G>A	uc002gmm.2	-	23	2947	c.2852C>T	c.(2851-2853)TCA>TTA	p.S951L	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	951	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CTTGAGTTCTGAACATTCATC	0.443000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				219	308					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10399748	10399748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:10399748C>T	uc002gmo.2	-	34	4869	c.4775G>A	c.(4774-4776)AGA>AAA	p.R1592K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1592	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						AATGTGGTTTCTCTTCATCTG	0.463000													94	152					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11659920	11659920	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:11659920G>A	uc002gne.2	+	34	6842	c.6774G>A	c.(6772-6774)CTG>CTA	p.L2258L	DNAH9_uc010coo.2_Silent_p.L1552L	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2258	AAA 2 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGATTCCTCTGAACCCCACCA	0.577000													138	214					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11666863	11666863	+	Missense_Mutation	SNP	G	A	A	rs140313224		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:11666863G>A	uc002gne.2	+	36	7170	c.7102G>A	c.(7102-7104)GAA>AAA	p.E2368K	DNAH9_uc010coo.2_Missense_Mutation_p.E1662K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2368					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity	p.E2368K(1)		skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CTGCCCTAAGGAAATTTATGA	0.493000													60	73					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11757633	11757633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:11757633G>A	uc002gne.2	+	50	9889	c.9821G>A	c.(9820-9822)AGA>AAA	p.R3274K	DNAH9_uc010coo.2_Missense_Mutation_p.R2568K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3274	Stalk (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AATATTGTGAGATTTTATGAG	0.542000													64	130					0	0	1	0	0
ZNF18	7566	broad.mit.edu	37	17	11886657	11886657	+	Silent	SNP	T	G	G	rs140979549	by1000genomes	TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:11886657T>G	uc002gng.1	-	8	1424	c.819A>C	c.(817-819)ATA>ATC	p.I273I	ZNF18_uc002gnh.1_Silent_p.I273I|ZNF18_uc002gni.1_Silent_p.I272I	NM_144680	NP_653281	P17022	ZNF18_HUMAN	zinc finger protein 18	273	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1				Colorectal(4;3.33e-05)|COAD - Colon adenocarcinoma(4;0.000494)|READ - Rectum adenocarcinoma(10;0.233)		CATGAAGGTATATTCCTGCCA	0.433000													79	123					0	0	1	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319242	21319242	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:21319242C>T	uc002gyv.1	+	3	1293	c.588C>T	c.(586-588)TTC>TTT	p.F196F		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	196	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	CGCTGCTGTTCAGCCACAACG	0.617000										Prostate(3;0.18)			16	76					0	0	1	0	0
FOXN1	8456	broad.mit.edu	37	17	26864179	26864179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:26864179C>T	uc010crm.2	+	9	1870	c.1672C>T	c.(1672-1674)CCC>TCC	p.P558S	FOXN1_uc002hbj.2_Missense_Mutation_p.P558S	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	558					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					GGCCCTCGACCCCCTGGTACT	0.602000													97	116					0	0	1	0	0
CCDC55	84081	broad.mit.edu	37	17	28511789	28511789	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:28511789T>G	uc002heu.2	+	7	802	c.774T>G	c.(772-774)GAT>GAG	p.D258E	CCDC55_uc002hev.2_Missense_Mutation_p.D204E|CCDC55_uc010wbl.1_Missense_Mutation_p.D204E|CCDC55_uc010wbm.1_Missense_Mutation_p.D204E|CCDC55_uc002hex.2_Missense_Mutation_p.D204E	NM_032141	NP_115517	Q9H0G5	NSRP1_HUMAN	coiled-coil domain containing 55 isoform 1	258					developmental process|nucleocytoplasmic transport|regulation of alternative nuclear mRNA splicing, via spliceosome	nuclear speck|ribonucleoprotein complex	mRNA binding|protein binding				0						GTGCGGATGATGAAATAGAAG	0.443000													28	32					0	0	1	0	0
ACCN1	40	broad.mit.edu	37	17	31350959	31350959	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:31350959C>T	uc002hhu.2	-	6	1390	c.1116G>A	c.(1114-1116)GAG>GAA	p.E372E	ACCN1_uc002hht.2_Silent_p.E423E	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	372	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	CCATGGAGAGCTCTTTGTTGT	0.473000													85	109					0	0	1	0	0
TBC1D3B	414059	broad.mit.edu	37	17	34499220	34499220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:34499220C>T	uc002hky.2	-	7	641	c.491G>A	c.(490-492)GGA>GAA	p.G164E	uc002hla.1_5'Flank|uc002hlc.2_5'Flank	NM_001001417	NP_001001417	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3B	164	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0		Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TTACTTGGTTCCGTATCGATC	0.572000													101	412					0	0	1	0	0
ACACA	31	broad.mit.edu	37	17	35478401	35478401	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:35478401C>T	uc002hnm.2	-	50	6230	c.6039G>A	c.(6037-6039)CAG>CAA	p.Q2013Q	ACACA_uc002hnk.2_Silent_p.Q1935Q|ACACA_uc002hnl.2_Silent_p.Q1955Q|ACACA_uc002hnn.2_Silent_p.Q2013Q|ACACA_uc002hno.2_Silent_p.Q2050Q|ACACA_uc010cuy.2_Silent_p.Q658Q|ACACA_uc010wdb.1_Silent_p.Q51Q|ACACA_uc010wdc.1_Silent_p.Q139Q	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	2013	Carboxyltransferase.			Q -> H (in Ref. 1; AAC50139).	acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	CCTGGCCAGCCTGCTGGATTA	0.443000													94	97					0	0	1	0	0
KRT222	125113	broad.mit.edu	37	17	38816460	38816460	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:38816460C>T	uc002hvc.2	-	3	291	c.226_splice	c.e3-1	p.E76_splice	KRT222_uc010wfk.1_Splice_Site|KRT222_uc002hvb.2_Splice_Site_p.E36_splice|KRT222_uc010cxc.2_Splice_Site_p.E36_splice	NM_152349	NP_689562	Q8N1A0	KT222_HUMAN	truncated type I keratin KA21							intermediate filament	structural molecule activity			central_nervous_system(1)|skin(1)	2						GGCCCCTTTCCTGTTTTATAT	0.358000													40	53					0	0	1	0	0
ATP6V0A1	535	broad.mit.edu	37	17	40639207	40639207	+	Missense_Mutation	SNP	T	C	C	rs111886720		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:40639207T>C	uc002hzr.2	+	10	1012	c.845T>C	c.(844-846)GTT>GCT	p.V282A	ATP6V0A1_uc002hzq.2_Missense_Mutation_p.V282A|ATP6V0A1_uc002hzs.2_Missense_Mutation_p.V289A|ATP6V0A1_uc010wgj.1_Missense_Mutation_p.V239A|ATP6V0A1_uc010wgk.1_Missense_Mutation_p.V239A|ATP6V0A1_uc010cyg.2_Intron|ATP6V0A1_uc010wgl.1_Missense_Mutation_p.V141A	NM_001130021	NP_001123493	Q93050	VPP1_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit a1	282	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytoplasmic vesicle membrane|endosome membrane|Golgi apparatus|integral to membrane|melanosome|nucleus|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1		all_cancers(22;1.18e-05)|Breast(137;0.000105)|all_epithelial(22;0.000254)		BRCA - Breast invasive adenocarcinoma(366;0.137)		CGCCAGAGGGTTCTGCAGGCA	0.478000													95	116					0	0	1	0	0
SLC4A1	6521	broad.mit.edu	37	17	42330613	42330614	+	Missense_Mutation	DNP	GG	AA	AA	rs150858709		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:42330613_42330614GG>AA	uc002igf.3	-	17	2332_2333	c.2183_2184CC>TT	c.(2182-2184)ACC>ATT	p.T728I		NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	728	Membrane (anion exchange).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity	p.T728T(1)		ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		CGGAACGCACGGTGGTGGCACT	0.639000													52	62					0	0	1	0	0
FMNL1	752	broad.mit.edu	37	17	43321188	43321188	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:43321188C>T	uc002iin.2	+	18	2444	c.2244C>T	c.(2242-2244)TTC>TTT	p.F748F	FMNL1_uc002iiq.2_Silent_p.F326F|FMNL1_uc010dag.2_RNA	NM_005892	NP_005883	O95466	FMNL_HUMAN	formin-like 1	748	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			pancreas(1)	1						GCCTGGACTTCCTGGAGCTGC	0.632000													26	36					0	0	1	0	0
CRHR1	1394	broad.mit.edu	37	17	43911206	43911206	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:43911206A>T	uc010dap.2	+	12	1408	c.1143A>T	c.(1141-1143)GAA>GAT	p.E381D	CRHR1_uc010wjx.1_Missense_Mutation_p.E177D|CRHR1_uc002ijp.2_Intron|CRHR1_uc002ijm.2_Missense_Mutation_p.E352D|CRHR1_uc002ijn.2_Missense_Mutation_p.E312D|CRHR1_uc010dar.2_Missense_Mutation_p.E352D|CRHR1_uc010dao.2_Missense_Mutation_p.E251D|CRHR1_uc010daq.2_Missense_Mutation_p.E177D	NM_001145146	NP_001138618	P34998	CRFR1_HUMAN	corticotropin releasing hormone receptor 1	381	Helical; Name=7; (Potential).				female pregnancy|immune response|parturition	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(3)	3	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.161)		CCTTCCTGGAATCCTTCCAGG	0.597000													70	118					0	0	1	0	0
CRHR1	1394	broad.mit.edu	37	17	43912008	43912008	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:43912008A>T	uc010dap.2	+	14	1478	c.1213A>T	c.(1213-1215)AAG>TAG	p.K405*	CRHR1_uc010wjx.1_Nonsense_Mutation_p.K201*|CRHR1_uc002ijp.2_Silent_p.G229G|CRHR1_uc002ijm.2_Nonsense_Mutation_p.K376*|CRHR1_uc002ijn.2_Nonsense_Mutation_p.K336*|CRHR1_uc010dar.2_Nonsense_Mutation_p.K362*|CRHR1_uc010dao.2_Nonsense_Mutation_p.K275*|CRHR1_uc010daq.2_Nonsense_Mutation_p.K201*	NM_001145146	NP_001138618	P34998	CRFR1_HUMAN	corticotropin releasing hormone receptor 1	405	Cytoplasmic (Potential).				female pregnancy|immune response|parturition	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(3)	3	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.161)		TGCCATCCGGAAGAGGTGGCA	0.662000													35	53					0	0	1	0	0
TTLL6	284076	broad.mit.edu	37	17	46847149	46847149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:46847149C>T	uc010wlo.1	-	15	2386	c.2351G>A	c.(2350-2352)GGG>GAG	p.G784E	TTLL6_uc002iob.2_Missense_Mutation_p.G477E|TTLL6_uc010dbi.2_Intron|TTLL6_uc002ioc.2_Missense_Mutation_p.G537E|TTLL6_uc002iod.2_Intron	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	736						cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						GGAGAGCTTCCCACTCAGTTG	0.453000													37	70					0	0	1	0	0
ITGA3	3675	broad.mit.edu	37	17	48156850	48156850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:48156850C>T	uc010dbl.2	+	21	3099	c.2635C>T	c.(2635-2637)CCA>TCA	p.P879S	ITGA3_uc010dbm.2_Missense_Mutation_p.P879S	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	879	Extracellular (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						ACAGCTGGATCCAGGGGGAGG	0.627000													41	53					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48270008	48270008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:48270008C>T	uc002iqm.2	-	28	2048	c.1922G>A	c.(1921-1923)GGA>GAA	p.G641E		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	641	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	CACCTGGAATCCGGGGGAGCC	0.602000			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						107	149					0	0	1	0	0
EME1	146956	broad.mit.edu	37	17	48452995	48452995	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:48452995C>T	uc002iqs.1	+	2	499	c.426C>T	c.(424-426)ATC>ATT	p.I142I	MRPL27_uc002iqq.2_5'Flank|MRPL27_uc002iqr.2_5'Flank|EME1_uc010dbp.1_Silent_p.I142I	NM_152463	NP_689676	Q96AY2	EME1_HUMAN	essential meiotic endonuclease 1 homolog 1	142					DNA recombination|DNA repair	nucleolus	DNA binding|endonuclease activity|metal ion binding|protein binding				0	Breast(11;5.62e-19)		BRCA - Breast invasive adenocarcinoma(22;2.43e-08)			TTCCAAAGATCCCTGAAGTTC	0.473000								Direct_reversal_of_damage|Homologous_recombination					66	89					0	0	1	0	0
SPATA20	64847	broad.mit.edu	37	17	48632654	48632654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:48632654C>T	uc002irf.2	+	15	2312	c.2171C>T	c.(2170-2172)TCT>TTT	p.S724F	SPATA20_uc002irc.2_Missense_Mutation_p.S391F|SPATA20_uc002ire.2_Missense_Mutation_p.S680F|SPATA20_uc002ird.2_Missense_Mutation_p.S740F|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	724					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			TGCGTCCACTCTGTCTACATT	0.587000													34	45					0	0	1	0	0
STXBP4	252983	broad.mit.edu	37	17	53237185	53237185	+	Silent	SNP	C	T	T	rs115962086	byFrequency	TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:53237185C>T	uc002iuf.1	+	18	1782	c.1575C>T	c.(1573-1575)ATC>ATT	p.I525I	STXBP4_uc010dcd.1_Silent_p.I503I	NM_178509	NP_848604	Q6ZWJ1	STXB4_HUMAN	syntaxin binding protein 4	525	WW.					cytoplasm	calcium ion binding			ovary(1)	1						CATCCTGGATCCATCCCGTGA	0.433000													46	66					0	0	1	0	0
OR4D1	26689	broad.mit.edu	37	17	56233203	56233203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:56233203G>A	uc010wno.1	+	1	689	c.689G>A	c.(688-690)GGA>GAA	p.G230E	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCCCACTCGGGAAAGGCAAGG	0.507000													30	54					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56388294	56388294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:56388294G>A	uc002ivx.3	-	19	4233	c.3362C>T	c.(3361-3363)CCC>CTC	p.P1121L	BZRAP1_uc010dcs.2_Missense_Mutation_p.P1061L|BZRAP1_uc010wnt.1_Missense_Mutation_p.P1121L	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1121	Pro-rich.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					AGTTCCAAGGGGAGCAGGGTG	0.657000													9	15					0	0	1	0	0
C17orf47	284083	broad.mit.edu	37	17	56619270	56619270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:56619270G>A	uc002iwq.1	-	2	1755	c.1619C>T	c.(1618-1620)TCC>TTC	p.S540F	SEPT4_uc010wnx.1_5'Flank|SEPT4_uc010wny.1_5'Flank	NM_001038704	NP_001033793	Q8NEP4	CQ047_HUMAN	hypothetical protein LOC284083	540										breast(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCATAGGAGGGAAAAGCACAG	0.493000													49	81					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	58511558	58511558	+	RNA	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:58511558C>T	uc002iyr.1	-	1		c.1800G>A								Homo sapiens cDNA FLJ33664 fis, clone BRAMY2027451, moderately similar to 60S RIBOSOMAL PROTEIN L12.																		TCGTTGGGGTCGAACTTTGGC	0.577000													9	16					0	0	1	0	0
APPBP2	10513	broad.mit.edu	37	17	58525003	58525003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:58525003G>A	uc002iys.1	-	13	1985	c.1697C>T	c.(1696-1698)TCC>TTC	p.S566F	APPBP2_uc010ddl.1_Missense_Mutation_p.S495F	NM_006380	NP_006371	Q92624	APBP2_HUMAN	amyloid beta precursor protein-binding protein	566					intracellular protein transport	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|nucleus	microtubule motor activity|protein binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.67e-13)|all cancers(12;1.44e-11)|Colorectal(3;0.01)			TTCTTCAGTGGACTGGGGGCT	0.493000													151	236					0	0	1	0	0
C17orf82	388407	broad.mit.edu	37	17	59489531	59489531	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:59489531C>A	uc002izh.1	+	1	420	c.195C>A	c.(193-195)GAC>GAA	p.D65E		NM_203425	NP_982249	Q86X59	CQ082_HUMAN	hypothetical protein LOC388407	65											0						GCTCGCAGGACAGGGCGGCAG	0.746000											OREG0024630	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	11					8.12818e-05	8.14322e-05	1	1	0
MRC2	9902	broad.mit.edu	37	17	60742020	60742020	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:60742020G>A	uc002jad.2	+	2	632	c.230G>A	c.(229-231)TGG>TAG	p.W77*	MRC2_uc002jac.2_Nonsense_Mutation_p.W77*	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	77	Extracellular (Potential).|Ricin B-type lectin.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GCCCAGCGCTGGAAGTGGGTC	0.642000													60	75					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60765983	60765983	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:60765983G>A	uc002jad.2	+	22	3585	c.3183G>A	c.(3181-3183)GGG>GGA	p.G1061G	MRC2_uc002jae.2_Silent_p.G132G|MRC2_uc002jaf.2_Missense_Mutation_p.G7E	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	1061	Extracellular (Potential).|C-type lectin 6.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GGGCACCTGGGGAGCCCTCTG	0.632000													59	71					0	0	1	0	0
CCDC47	57003	broad.mit.edu	37	17	61829298	61829298	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:61829298A>G	uc002jbs.3	-	12	1707	c.1371_splice	c.e12+1	p.E457_splice	CCDC47_uc010ddx.2_Splice_Site_p.E457_splice|CCDC47_uc002jbt.2_Missense_Mutation_p.V458A	NM_020198	NP_064583	Q96A33	CCD47_HUMAN	coiled-coil domain containing 47 precursor							integral to membrane	protein binding				0						AGTTTGTCTAACCTCCAGCCT	0.443000													96	140					0	0	1	0	0
ABCA9	10350	broad.mit.edu	37	17	66986991	66986991	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:66986991C>T	uc002jhu.2	-	29	3967	c.3824G>A	c.(3823-3825)CGA>CAA	p.R1275Q	ABCA9_uc010dez.2_Missense_Mutation_p.R1237Q	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1275					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					ATCAAAGTCTCGCACAGCCAT	0.388000													45	62					0	0	1	0	0
ABCA10	10349	broad.mit.edu	37	17	67197708	67197708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:67197708G>A	uc010dfa.1	-	11	1987	c.1108C>T	c.(1108-1110)CCT>TCT	p.P370S	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_5'UTR|ABCA10_uc010dfc.1_Intron	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	370					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					GAATGCTCAGGATTTATTTCA	0.353000													54	50					0	0	1	0	0
GPR142	350383	broad.mit.edu	37	17	72366762	72366762	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:72366762T>G	uc010wqy.1	+	3	461	c.461T>G	c.(460-462)GTG>GGG	p.V154G	GPR142_uc010wqx.1_Missense_Mutation_p.V66G	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	154	Helical; Name=1; (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TCCCCGTGTGTGGCTGGCGTC	0.647000													56	77					0	0	1	0	0
CD300LF	146722	broad.mit.edu	37	17	72694588	72694588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:72694588G>A	uc002jlg.2	-	4	582	c.479C>T	c.(478-480)CCC>CTC	p.P160L	RAB37_uc002jlc.2_Intron|RAB37_uc010dfu.2_Intron|RAB37_uc002jld.2_Intron|CD300LF_uc002jlf.2_Missense_Mutation_p.P163L|CD300LF_uc010dfw.2_Intron|CD300LF_uc002jlh.2_Silent_p.A175A|CD300LF_uc002jli.2_Intron|CD300LF_uc010wra.1_Missense_Mutation_p.P175L|CD300LF_uc002jlj.1_Missense_Mutation_p.P178L	NM_139018	NP_620587	Q8TDQ1	CLM1_HUMAN	NK inhibitory receptor precursor	160	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity			upper_aerodigestive_tract(1)	1						GAAGATGAGGGGCAGGAGGAC	0.572000													30	35					0	0	1	0	0
GAA	2548	broad.mit.edu	37	17	78082287	78082287	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:78082287G>A	uc002jxo.2	+	8	1258	c.1076_splice	c.e8-1	p.G359_splice	GAA_uc002jxp.2_Splice_Site_p.G359_splice|GAA_uc002jxq.2_Splice_Site_p.G359_splice	NM_001079803	NP_001073271	P10253	LYAG_HUMAN	acid alpha-glucosidase preproprotein						cardiac muscle contraction|diaphragm contraction|glycogen catabolic process|lysosome organization|tongue morphogenesis|vacuolar sequestering|ventricular cardiac muscle tissue morphogenesis	lysosomal membrane	carbohydrate binding|maltose alpha-glucosidase activity			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)		Acarbose(DB00284)	TTGGCCTGCAGGATACCCGTT	0.672000													22	24					0	0	1	0	0
PDE6G	5148	broad.mit.edu	37	17	79620252	79620252	+	Silent	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:79620252A>G	uc002kay.3	-	2	228	c.84T>C	c.(82-84)CCT>CCC	p.P28P	PDE6G_uc002kaz.3_Intron	NM_002602	NP_002593	P18545	CNRG_HUMAN	phosphodiesterase 6G	28	Arg/Lys-rich (basic).				platelet activation|visual perception	cytosol	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|enzyme inhibitor activity				0	all_neural(118;0.0878)|all_lung(278;0.175)|Lung NSC(278;0.192)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			GCTTAAATTTAGGGGGCCCTT	0.612000													78	111					0	0	1	0	0
L3MBTL4	91133	broad.mit.edu	37	18	5969445	5969445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:5969445G>A	uc002kmz.3	-	18	1748	c.1588C>T	c.(1588-1590)CCA>TCA	p.P530S	L3MBTL4_uc010dkt.2_Missense_Mutation_p.P530S|L3MBTL4_uc002kmy.3_Missense_Mutation_p.P359S	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	530					chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				GCCACGCCTGGAAGCAACTTG	0.647000													87	119					0	0	1	0	0
ARHGAP28	79822	broad.mit.edu	37	18	6851122	6851122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:6851122C>T	uc010wzi.1	+	3	363	c.125C>T	c.(124-126)CCA>CTA	p.P42L	ARHGAP28_uc002knc.2_Silent_p.S159S|ARHGAP28_uc002knd.2_Silent_p.S52S|ARHGAP28_uc002kne.2_Silent_p.S52S|ARHGAP28_uc002knf.2_Silent_p.S43S			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	42					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				CAAGTGGTTCCATGGTAAGTT	0.428000													41	51					0	0	1	0	0
ARHGAP28	79822	broad.mit.edu	37	18	6876188	6876188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:6876188G>A	uc010wzi.1	+	9	978	c.740G>A	c.(739-741)GGA>GAA	p.G247E	ARHGAP28_uc002knc.2_Missense_Mutation_p.G372E|ARHGAP28_uc002knd.2_Missense_Mutation_p.G265E|ARHGAP28_uc002kne.2_Missense_Mutation_p.G265E|ARHGAP28_uc002knf.2_Missense_Mutation_p.G256E			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	247					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				CGACTTTCAGGATGTACTGCT	0.388000													53	68					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14543092	14543092	+	Silent	SNP	G	A	A	rs45502401		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:14543092G>A	uc010dln.2	-	1	508	c.54C>T	c.(52-54)TTC>TTT	p.F18F	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	18										skin(3)	3						TCCTGAGATCGAATGGCTTCT	0.572000													7	148					0	0	1	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14851836	14851836	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:14851836A>G	uc010dlo.2	+	36	3716	c.3536A>G	c.(3535-3537)CAT>CGT	p.H1179R	ANKRD30B_uc010xal.1_Missense_Mutation_p.H321R	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	1264										ovary(1)|skin(1)	2						GAATCACACCATCCTAGACTG	0.413000													4	9					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21526238	21526238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:21526238G>A	uc002kuq.2	+	70	9427	c.9341G>A	c.(9340-9342)GGG>GAG	p.G3114E	LAMA3_uc002kur.2_Missense_Mutation_p.G3058E|LAMA3_uc002kus.3_Missense_Mutation_p.G1505E|LAMA3_uc002kut.3_Missense_Mutation_p.G1449E	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	3114	Laminin G-like 4.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCTCCATCAGGGAAACCAAAG	0.448000													39	60					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28916455	28916455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:28916455G>A	uc002kwp.2	+	9	1356	c.1144G>A	c.(1144-1146)GGC>AGC	p.G382S		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	382	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			TGTAATTGAAGGCCCAGTGTT	0.368000													39	49					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31325069	31325069	+	Silent	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:31325069T>C	uc010dmg.1	+	12	5312	c.5257T>C	c.(5257-5259)TTA>CTA	p.L1753L	ASXL3_uc002kxq.2_Silent_p.L1460L	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1753					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GGTGACGCAGTTACTACAGGG	0.532000													31	26					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31325440	31325440	+	Silent	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:31325440A>G	uc010dmg.1	+	12	5683	c.5628A>G	c.(5626-5628)CAA>CAG	p.Q1876Q	ASXL3_uc002kxq.2_Silent_p.Q1583Q	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1876					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CATTTAAGCAAGAATGGCTAA	0.507000													183	222					0	0	1	0	0
SETBP1	26040	broad.mit.edu	37	18	42531060	42531060	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:42531060G>A	uc010dni.2	+	4	2051	c.1755G>A	c.(1753-1755)AAG>AAA	p.K585K		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	585	A.T hook 1.					nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		CAGTCAAAAAGAAGCGGGGAC	0.537000									Schinzel-Giedion_syndrome				75	105					0	0	1	0	0
SLC14A1	6563	broad.mit.edu	37	18	43310340	43310340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:43310340G>A	uc010xcn.1	+	4	374	c.55G>A	c.(55-57)GAA>AAA	p.E19K	SLC14A1_uc010dnk.2_Missense_Mutation_p.E75K|SLC14A1_uc002lbf.3_Missense_Mutation_p.E19K|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_Intron|SLC14A1_uc002lbh.3_Intron|SLC14A1_uc002lbi.3_Intron|SLC14A1_uc002lbj.3_Missense_Mutation_p.E75K|SLC14A1_uc002lbk.3_Missense_Mutation_p.E19K	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	19						integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						GGTTAGGGGTGAAAACCAGGT	0.507000													53	71					0	0	1	0	0
MAPK4	5596	broad.mit.edu	37	18	48190730	48190730	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:48190730C>T	uc002lev.2	+	2	1402	c.402C>T	c.(400-402)CTC>CTT	p.L134L	MAPK4_uc010xdm.1_Intron|MAPK4_uc010doz.2_Silent_p.L134L	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	134	Protein kinase.				cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		ACCAGCTGCTCCGCGGGCTCA	0.602000													55	61					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50985602	50985602	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:50985602G>A	uc002lfe.1	+	24	3980	c.3393G>A	c.(3391-3393)AAG>AAA	p.K1131K	DCC_uc010dpf.1_Silent_p.K766K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1131	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TGTTCCATAGGAAACGGGCCA	0.443000													21	26					0	0	1	0	0
TCF4	6925	broad.mit.edu	37	18	52942943	52942943	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:52942943C>T	uc002lfz.2	-	10	1308	c.696G>A	c.(694-696)GGG>GGA	p.G232G	TCF4_uc002lfw.3_Silent_p.G72G|TCF4_uc010xdu.1_Silent_p.G102G|TCF4_uc010xdv.1_Silent_p.G102G|TCF4_uc002lfx.2_Silent_p.G161G|TCF4_uc010xdw.1_Silent_p.G102G|TCF4_uc002lfy.2_Silent_p.G190G|TCF4_uc010xdx.1_Silent_p.G208G|TCF4_uc010dph.1_Silent_p.G232G|TCF4_uc010xdy.1_Silent_p.G208G|TCF4_uc002lga.2_Silent_p.G334G|TCF4_uc002lgb.1_Silent_p.G72G|TCF4_uc010dpi.2_Silent_p.G238G|TCF4_uc002lgc.3_Silent_p.G153G|TCF4_uc002lfv.2_Silent_p.G16G	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	232					positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		GCTGATTCATCCCACTGGAGG	0.493000													156	233					0	0	1	0	0
WDR7	23335	broad.mit.edu	37	18	54694330	54694330	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:54694330G>A	uc002lgk.1	+	28	4576	c.4365G>A	c.(4363-4365)GCG>GCA	p.A1455A	WDR7_uc002lgl.1_Silent_p.A1422A	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	1455										ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		TGCAGCCCGCGTCCCCCGGCT	0.617000													32	61					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59157987	59157987	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:59157987C>T	uc010dps.1	+	1	213	c.201C>T	c.(199-201)TTC>TTT	p.F67F	CDH20_uc002lif.2_Silent_p.F61F	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	67	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				ACCAGTTTTTCGTTCTGGAAG	0.478000													83	122					0	0	1	0	0
SERPINB2	5055	broad.mit.edu	37	18	61565017	61565017	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:61565017C>T	uc010xeu.1	+	6	807	c.474C>T	c.(472-474)TTC>TTT	p.F158F	SERPINB2_uc002ljo.2_Silent_p.F158F|SERPINB2_uc010dqh.2_Silent_p.F88F|SERPINB2_uc002ljp.1_5'UTR|SERPINB2_uc002ljq.1_5'UTR	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	158					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	CAGTAGACTTCCTAGAATGTG	0.343000													32	72					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76752552	76752552	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:76752552G>A	uc002lmt.2	+	2	561	c.561G>A	c.(559-561)GCG>GCA	p.A187A	SALL3_uc010dra.2_5'Flank	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	187					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GCGCGCGCGCGGCAGGCGGCT	0.721000													6	6					0	0	1	0	0
POLR2E	5434	broad.mit.edu	37	19	1095392	1095392	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:1095392G>A	uc002lre.3	-	1	1	c.-76_splice	c.e1-1		POLR2E_uc010xgf.1_Splice_Site	NM_002695	NP_002686	P19388	RPAB1_HUMAN	DNA directed RNA polymerase II polypeptide E						interspecies interaction between organisms|mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase II promoter|transcription elongation from RNA polymerase III promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCCGAATCCGAATCAGGCCC	0.716000													18	14					0	0	1	0	0
REXO1	57455	broad.mit.edu	37	19	1826952	1826952	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:1826952G>A	uc002lua.3	-	2	1931	c.1836C>T	c.(1834-1836)CCC>CCT	p.P612P	REXO1_uc010dsr.1_Silent_p.P566P	NM_020695	NP_065746	Q8N1G1	REXO1_HUMAN	transcription elongation factor B polypeptide 3	612						nucleus	exonuclease activity|nucleic acid binding				0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACTCCTCCATGGGGTCGGAGT	0.552000													7	13					0	0	1	0	0
SCAMP4	113178	broad.mit.edu	37	19	1918277	1918277	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:1918277C>T	uc002luj.2	+	4	395	c.288C>T	c.(286-288)GCC>GCT	p.A96A	SCAMP4_uc002lui.1_Silent_p.A96A|SCAMP4_uc002luk.2_Silent_p.A96A|SCAMP4_uc010dss.2_Silent_p.A52A	NM_079834	NP_524558	Q969E2	SCAM4_HUMAN	secretory carrier membrane protein 4	96					protein transport	integral to membrane					0		Ovarian(11;2.11e-07)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCTACAAGGCCTTCCGGTGAG	0.672000													16	11					0	0	1	0	0
LRG1	116844	broad.mit.edu	37	19	4538735	4538735	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:4538735G>A	uc002mau.2	-	2	272	c.261C>T	c.(259-261)CTC>CTT	p.L87L	PLIN5_uc002mat.1_Intron	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	87						extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCCCTGGAGGAGGTTGGCTG	0.627000													40	38					0	0	1	0	0
DUS3L	56931	broad.mit.edu	37	19	5786501	5786501	+	Silent	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:5786501A>G	uc002mdc.2	-	10	1636	c.1539T>C	c.(1537-1539)GGT>GGC	p.G513G	PRR22_uc002mdb.1_5'Flank|PRR22_uc010xiv.1_5'Flank|DUS3L_uc002mdd.2_Silent_p.G271G|DUS3L_uc010duk.2_Silent_p.G178G	NM_020175	NP_064560	Q96G46	DUS3L_HUMAN	dihydrouridine synthase 3-like isoform 1	513					tRNA processing		flavin adenine dinucleotide binding|nucleic acid binding|tRNA dihydrouridine synthase activity|zinc ion binding				0						TCCCGGTGACACCAGTCTGCA	0.587000													30	70					0	0	1	0	0
SLC25A41	284427	broad.mit.edu	37	19	6433510	6433510	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:6433510G>A	uc010dus.2	-	1	281	c.195C>T	c.(193-195)CTC>CTT	p.L65L	SLC25A41_uc010dut.2_5'UTR	NM_173637	NP_775908	Q8N5S1	S2541_HUMAN	solute carrier family 25, member 41	65					transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						GCTGTGACGGGAGATGTTCAA	0.493000													70	101					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6693046	6693046	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:6693046G>A	uc002mfm.2	-	26	3341	c.3279C>T	c.(3277-3279)ATC>ATT	p.I1093I	C3_uc002mfl.2_5'UTR	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1093					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		AGTCGATGGCGATGAGGTTGA	0.597000													109	141					0	0	1	0	0
SH2D3A	10045	broad.mit.edu	37	19	6760924	6760924	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:6760924C>T	uc002mft.2	-	3	338	c.144G>A	c.(142-144)GTG>GTA	p.V48V	SH2D3A_uc010xjg.1_Intron	NM_005490	NP_005481	Q9BRG2	SH23A_HUMAN	SH2 domain containing 3A	48	SH2.				JNK cascade|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			breast(2)	2						GGCAGGAGATCACGGGGTTGC	0.642000													30	44					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8138105	8138105	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:8138105G>C	uc002mjf.2	-	61	7800	c.7779C>G	c.(7777-7779)TGC>TGG	p.C2593W	FBN3_uc002mje.2_Missense_Mutation_p.C389W	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2593	EGF-like 43; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						AGGGGCAGACGCAGCGGAAGC	0.647000													34	52					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9001894	9001894	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:9001894G>A	uc002mkp.2	-	53	40558	c.40354C>T	c.(40354-40356)CCT>TCT	p.P13452S	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.P269S|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13454	Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGTATCAGGAGCTGAGGAG	0.507000													22	25					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9057582	9057582	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:9057582G>A	uc002mkp.2	-	3	30068	c.29864C>T	c.(29863-29865)ACC>ATC	p.T9955I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9957	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGGTGATGGTCATTTGTGT	0.498000													168	273					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9072036	9072036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:9072036G>A	uc002mkp.2	-	3	15614	c.15410C>T	c.(15409-15411)TCC>TTC	p.S5137F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5139	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGGGAATGGGATTCATGTCC	0.453000													59	94					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9075374	9075374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:9075374C>T	uc002mkp.2	-	3	12276	c.12072G>A	c.(12070-12072)ATG>ATA	p.M4024I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4026	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGCTGGTGTCCATGTAAGGGC	0.458000													49	70					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9076820	9076820	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:9076820G>A	uc002mkp.2	-	3	10830	c.10626C>T	c.(10624-10626)ATC>ATT	p.I3542I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3543	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCATGGTGGTGATGGTGGTGG	0.547000													105	229					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9076887	9076887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:9076887G>A	uc002mkp.2	-	3	10763	c.10559C>T	c.(10558-10560)TCA>TTA	p.S3520L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3521	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGCAGGAGATGAAGTCTGAGA	0.507000													88	191					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10077009	10077009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:10077009G>A	uc002mmq.1	-	64	4849	c.4763C>T	c.(4762-4764)CCC>CTC	p.P1588L		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1588	Fibrillar collagen NC1.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CTTCTTGTCGGGATAGAGGCA	0.592000													49	61					0	0	1	0	0
C3P1	388503	broad.mit.edu	37	19	10169537	10169537	+	RNA	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:10169537C>T	uc010dwx.1	+	18		c.2172C>T				NR_027300				Synthetic construct DNA, clone: pF1KB7402, Homo sapiens LOC388503 gene, without stop codon, in Flexi system.												0						GAGAAAACTTCCCGACATTCA	0.572000													68	75					0	0	1	0	0
CLEC17A	388512	broad.mit.edu	37	19	14710852	14710852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:14710852G>A	uc010dzn.1	+	12	829	c.752G>A	c.(751-753)CGA>CAA	p.R251Q	CLEC17A_uc002mzh.1_Missense_Mutation_p.R234Q|CLEC17A_uc010xnt.1_RNA|CLEC17A_uc010xnu.1_Intron|CLEC17A_uc010dzo.1_Missense_Mutation_p.R251Q			Q6ZS10	CL17A_HUMAN	SubName: Full=CLEC17A protein;	251	Extracellular (Potential).					cell surface|integral to membrane	fucose binding|mannose binding|metal ion binding|receptor activity				0						GACTGCCGCCGAATTACCTGT	0.468000													37	50					0	0	1	0	0
OR7A5	26659	broad.mit.edu	37	19	14938507	14938507	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:14938507G>A	uc002mzw.2	-	1	770	c.547C>T	c.(547-549)CAG>TAG	p.Q183*	OR7A5_uc010xoa.1_Nonsense_Mutation_p.Q183*	NM_017506	NP_059976	Q15622	OR7A5_HUMAN	olfactory receptor, family 7, subfamily A,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(2)	2						TGGATGACCTGATTAAGTTCA	0.443000													53	68					0	0	1	0	0
SLC1A6	6511	broad.mit.edu	37	19	15067485	15067485	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:15067485C>T	uc002naa.1	-	6	980	c.972G>A	c.(970-972)GGG>GGA	p.G324G	SLC1A6_uc010dzu.1_Intron|SLC1A6_uc010xod.1_Silent_p.G260G	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	324	Helical; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	CCAGAATCTTCCCAGCAATCA	0.597000													41	83					0	0	1	0	0
SLC1A6	6511	broad.mit.edu	37	19	15073069	15073069	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:15073069G>A	uc002naa.1	-	5	688	c.680C>T	c.(679-681)CCA>CTA	p.P227L	SLC1A6_uc010dzu.1_Missense_Mutation_p.P227L|SLC1A6_uc010xod.1_Missense_Mutation_p.P163L|SLC1A6_uc002nab.2_Missense_Mutation_p.P227L|SLC1A6_uc002nac.2_Missense_Mutation_p.P227L	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	227	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	CACTGAGAATGGAGGAGGCAT	0.562000													81	125					0	0	1	0	0
F2RL3	9002	broad.mit.edu	37	19	17000949	17000949	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:17000949C>T	uc002nfa.2	+	2	850	c.675C>T	c.(673-675)CGC>CGT	p.R225R		NM_003950	NP_003941	Q96RI0	PAR4_HUMAN	coagulation factor II (thrombin) receptor-like 3	225	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|platelet activation|positive regulation of release of sequestered calcium ion into cytosol	extracellular region|integral to plasma membrane	thrombin receptor activity				0						GCTCCGATCGCGTGCTCTGCC	0.697000													11	19					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17068707	17068707	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:17068707C>T	uc002nfb.2	-	19	2405	c.2373G>A	c.(2371-2373)AGG>AGA	p.R791R		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	744						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GGAAGAAAGTCCTTTTTCTCT	0.363000													124	185					0	0	1	0	0
USE1	55850	broad.mit.edu	37	19	17330493	17330493	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:17330493G>A	uc002nfo.2	+	8	711	c.651G>A	c.(649-651)ACG>ACA	p.T217T	USE1_uc010eal.1_3'UTR	NM_018467	NP_060937	Q9NZ43	USE1_HUMAN	unconventional SNARE in the ER 1 homolog	217	Cytoplasmic (Potential).|Potential.				lysosomal transport|protein catabolic process|protein transport|secretion by cell|vesicle-mediated transport	endoplasmic reticulum membrane|integral to membrane	protein binding				0						AACTGAAGACGGAGTCAGAGC	0.532000													50	48					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17720797	17720797	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:17720797T>G	uc002nhd.2	-	42	5027	c.5027A>C	c.(5026-5028)AAA>ACA	p.K1676T		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1588	C2 3.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						GTTCTTGGATTTGGTCGCAAA	0.537000													58	88					0	0	1	0	0
GDF1	2657	broad.mit.edu	37	19	18991213	18991213	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:18991213G>A	uc002nki.1	-	4	694	c.622C>T	c.(622-624)CTG>TTG	p.L208L	LASS1_uc002nkj.2_Silent_p.L208L|LASS1_uc010ebx.2_Silent_p.L110L	NM_021267	NP_067090	P27539	GDF1_HUMAN	LAG1 homolog, ceramide synthase 1 isoform 1	Error:Variant_position_missing_in_P27539_after_alignment					growth	extracellular space	cytokine activity|growth factor activity				0						ATATCGTGCAGGAAGAGCACA	0.582000													12	8					0	0	1	0	0
ZNF98	148198	broad.mit.edu	37	19	22574657	22574657	+	Silent	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:22574657T>C	uc002nqt.2	-	4	1502	c.1380A>G	c.(1378-1380)AAA>AAG	p.K460K		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	460					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				ATTTGTAGGGTTTCTCTCCAG	0.373000													3	143					0	0	1	0	0
RPSAP58	388524	broad.mit.edu	37	19	24010594	24010594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:24010594G>A	uc002nrn.2	+	4	1054	c.631G>A	c.(631-633)GAA>AAA	p.E211K		NM_002295	NP_002286			ribosomal protein SA												0						TGAAGAGATTGAAAAAGAAGA	0.532000													11	20					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30935544	30935544	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:30935544T>C	uc002nsu.1	+	2	1213	c.1075T>C	c.(1075-1077)TTC>CTC	p.F359L	ZNF536_uc010edd.1_Missense_Mutation_p.F359L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	359	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CCAGGCGTGGTTCCTCAAGGG	0.647000													113	188					0	0	1	0	0
ZNF507	22847	broad.mit.edu	37	19	32843758	32843758	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:32843758G>T	uc002nte.2	+	3	294	c.22G>T	c.(22-24)GCC>TCC	p.A8S	ZNF507_uc002ntc.2_Missense_Mutation_p.A8S|ZNF507_uc010xrn.1_Missense_Mutation_p.A8S|ZNF507_uc002ntd.2_Missense_Mutation_p.A8S	NM_001136156	NP_001129628	Q8TCN5	ZN507_HUMAN	zinc finger protein 507	8					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)|kidney(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(110;0.162)					TAGCAGTGTTGCCATGTTGGT	0.353000													4	171					1	1	1	1	0
RYR1	6261	broad.mit.edu	37	19	39008006	39008006	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:39008006G>A	uc002oit.2	+	66	9823	c.9693G>A	c.(9691-9693)GGG>GGA	p.G3231G	RYR1_uc002oiu.2_Silent_p.G3231G|RYR1_uc002oiv.1_Silent_p.G151G|RYR1_uc010xuf.1_Silent_p.G151G	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3231					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CAGTCCTGGGGCTCCCCAACA	0.637000													58	59					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40411993	40411993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:40411993G>A	uc002omp.3	-	7	3643	c.3635C>T	c.(3634-3636)TCC>TTC	p.S1212F		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1212	Cys-rich.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GTGGCAAAGGGAATCACATCC	0.672000													33	51					0	0	1	0	0
ZNF780A	284323	broad.mit.edu	37	19	40581982	40581982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:40581982C>T	uc002omy.2	-	6	592	c.367G>A	c.(367-369)GAA>AAA	p.E123K	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Missense_Mutation_p.E123K|ZNF780A_uc010xvh.1_Missense_Mutation_p.E124K	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	123					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TGTCTATATTCTGAGTCATTT	0.348000													30	56					0	0	1	0	0
SHKBP1	92799	broad.mit.edu	37	19	41089548	41089548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:41089548C>T	uc002oob.2	+	12	1139	c.1090C>T	c.(1090-1092)CTT>TTT	p.L364F	SHKBP1_uc002ooc.2_Missense_Mutation_p.L339F|SHKBP1_uc002ood.2_Missense_Mutation_p.L364F|SHKBP1_uc010xvl.1_Missense_Mutation_p.L287F|SHKBP1_uc002ooe.2_Missense_Mutation_p.L201F|SHKBP1_uc002oof.2_Missense_Mutation_p.L201F|SHKBP1_uc010xvm.1_Missense_Mutation_p.L201F|SHKBP1_uc010xvn.1_Missense_Mutation_p.L242F	NM_138392	NP_612401	Q8TBC3	SHKB1_HUMAN	SH3KBP1 binding protein 1	364						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|pancreas(1)	2			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CAACGACCTCCTTGTCAGCGA	0.617000													118	173					0	0	1	0	0
TGFB1	7040	broad.mit.edu	37	19	41848150	41848150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:41848150C>T	uc002oqh.1	-	4	1504	c.637G>A	c.(637-639)GAA>AAA	p.E213K	CYP2F1_uc010xvw.1_Intron	NM_000660	NP_000651	P01137	TGFB1_HUMAN	transforming growth factor, beta 1 precursor	213					active induction of host immune response by virus|ATP biosynthetic process|cell cycle arrest|cell growth|cell-cell junction organization|chondrocyte differentiation|connective tissue replacement involved in inflammatory response wound healing|epidermal growth factor receptor signaling pathway|evasion of host defenses by virus|hemopoietic progenitor cell differentiation|induction of apoptosis|lymph node development|mitotic cell cycle G1/S transition checkpoint|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of cell-cell adhesion|negative regulation of DNA replication|negative regulation of epithelial cell proliferation|negative regulation of fat cell differentiation|negative regulation of macrophage cytokine production|negative regulation of mitotic cell cycle|negative regulation of protein phosphorylation|ossification involved in bone remodeling|pathway-restricted SMAD protein phosphorylation|platelet activation|platelet degranulation|positive regulation of blood vessel endothelial cell migration|positive regulation of bone mineralization|positive regulation of cell division|positive regulation of chemotaxis|positive regulation of collagen biosynthetic process|positive regulation of epithelial to mesenchymal transition|positive regulation of fibroblast migration|positive regulation of interleukin-17 production|positive regulation of isotype switching to IgA isotypes|positive regulation of MAP kinase activity|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of protein dephosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein secretion|positive regulation of SMAD protein import into nucleus|protein export from nucleus|protein import into nucleus, translocation|receptor catabolic process|regulation of DNA binding|regulation of striated muscle tissue development|regulation of transforming growth factor beta receptor signaling pathway|response to cholesterol|response to estradiol stimulus|response to progesterone stimulus|salivary gland morphogenesis|SMAD protein complex assembly|SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway|viral infectious cycle	extracellular space|Golgi lumen|nucleus|platelet alpha granule lumen|proteinaceous extracellular matrix	growth factor activity|type II transforming growth factor beta receptor binding				0					Hyaluronidase(DB00070)	CCCTCAATTTCCCCTGTAGGA	0.602000													11	13					0	0	1	0	0
CEACAM21	90273	broad.mit.edu	37	19	42085743	42085743	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:42085743C>T	uc002ore.3	+	3	558	c.462C>T	c.(460-462)ACC>ACT	p.T154T	CEACAM21_uc002orc.1_RNA|CEACAM21_uc002ord.1_RNA|CEACAM21_uc002orf.2_RNA|CEACAM21_uc002org.3_Silent_p.T154T	NM_001098506	NP_001091976	Q3KPI0	CEA21_HUMAN	carcinoembryonic antigen-related cell adhesion	154	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						CCAGCAGCACCACAGTCACAG	0.537000													67	74					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42473728	42473728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:42473728C>T	uc002osg.2	-	19	2701	c.2547G>A	c.(2545-2547)ATG>ATA	p.M849I	ATP1A3_uc010xwf.1_Missense_Mutation_p.M860I|ATP1A3_uc010xwg.1_Missense_Mutation_p.M819I|ATP1A3_uc010xwh.1_Missense_Mutation_p.M862I|ATP1A3_uc002osh.2_Missense_Mutation_p.M849I	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	849	Helical; (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						GAGCCTGGATCATTCCTGGAA	0.607000													63	77					0	0	1	0	0
LIPE	3991	broad.mit.edu	37	19	42914822	42914822	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:42914822C>T	uc002otr.2	-	2	1333	c.1056G>A	c.(1054-1056)CTG>CTA	p.L352L	uc010eif.1_Intron|LIPE_uc002ots.1_Silent_p.L97L	NM_005357	NP_005348	Q05469	LIPS_HUMAN	hormone-sensitive lipase	352					cholesterol metabolic process|protein phosphorylation|triglyceride catabolic process	caveola|cytosol	hormone-sensitive lipase activity|protein binding			ovary(1)|breast(1)	2		Prostate(69;0.00682)				GCAGGCGGCCCAGGGCCGGCT	0.692000													10	8					0	0	1	0	0
PLAUR	5329	broad.mit.edu	37	19	44153050	44153050	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:44153050A>C	uc002oxf.1	-	7	1230	c.1000T>G	c.(1000-1002)TGG>GGG	p.W334G	PLAUR_uc002oxd.1_Intron|PLAUR_uc002oxe.1_Missense_Mutation_p.W329G|PLAUR_uc002oxg.1_Missense_Mutation_p.W289G	NM_002659	NP_002650	Q03405	UPAR_HUMAN	plasminogen activator, urokinase receptor	334					attachment of GPI anchor to protein|blood coagulation|C-terminal protein lipidation|cellular component movement|chemotaxis|fibrinolysis|regulation of proteolysis	anchored to membrane|cell surface|endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region|extrinsic to membrane|integral to membrane|plasma membrane	enzyme binding|U-plasminogen activator receptor activity			ovary(1)	1		Prostate(69;0.0153)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Streptokinase(DB00086)|Tenecteplase(DB00031)|Urokinase(DB00013)	GTTTAGGTCCAGAGGAGAGTG	0.522000													79	109					0	0	1	0	0
ZFP112	7771	broad.mit.edu	37	19	44831935	44831935	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:44831935A>G	uc010ejj.2	-	5	2506	c.2393T>C	c.(2392-2394)GTT>GCT	p.V798A	ZFP112_uc002ozc.3_Missense_Mutation_p.V792A|ZFP112_uc010xwy.1_Missense_Mutation_p.V815A|ZFP112_uc010xwz.1_Missense_Mutation_p.V797A	NM_001083335	NP_001076804	Q9UJU3	ZF112_HUMAN	zinc finger protein 228 isoform 1	798	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)	5						TTCCACATGAACCCTTTGGTG	0.478000													89	120					0	0	1	0	0
BCAM	4059	broad.mit.edu	37	19	45316556	45316556	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:45316556G>A	uc002ozu.2	+	5	598	c.554G>A	c.(553-555)TGG>TAG	p.W185*	BCAM_uc002ozt.1_Nonsense_Mutation_p.W185*	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	185	Extracellular (Potential).|Ig-like V-type 2.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				AAGATCACGTGGTATCGCAAC	0.682000													52	80					0	0	1	0	0
NANOS2	339345	broad.mit.edu	37	19	46417689	46417689	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:46417689A>C	uc002pdu.2	-	1	348	c.263T>G	c.(262-264)GTG>GGG	p.V88G		NM_001029861	NP_001025032	P60321	NANO2_HUMAN	nanos homolog 2	88	Nanos-type.|C2HC 1.				germ-line stem cell maintenance|mRNA catabolic process|multicellular organismal development|negative regulation of meiosis|regulation of translation|spermatogenesis	cytoplasmic mRNA processing body|perinuclear region of cytoplasm	RNA binding|zinc ion binding				0		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0668)|Epithelial(262;0.231)		GGGACACACCACCACGCCATC	0.647000													48	70					0	0	1	0	0
LMTK3	114783	broad.mit.edu	37	19	49013730	49013730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:49013730C>T	uc002pjk.2	-	3	283	c.283G>A	c.(283-285)GAT>AAT	p.D95N		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		AAGCCGACATCGCCCCGTTTG	0.602000													9	9					0	0	1	0	0
TULP2	7288	broad.mit.edu	37	19	49391365	49391365	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:49391365G>A	uc002pkz.2	-	8	941	c.790C>T	c.(790-792)CCC>TCC	p.P264S		NM_003323	NP_003314	O00295	TULP2_HUMAN	tubby like protein 2	264					visual perception	cytoplasm|extracellular region				ovary(1)|kidney(1)|skin(1)	3		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000259)|all cancers(93;0.000435)|Epithelial(262;0.0221)|GBM - Glioblastoma multiforme(486;0.0234)		CCAGGGCAGGGGGAGCGGATT	0.637000													28	43					0	0	1	0	0
PRR12	57479	broad.mit.edu	37	19	50102853	50102853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:50102853C>T	uc002poo.3	+	5	4003	c.4003C>T	c.(4003-4005)CCC>TCC	p.P1335S		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	514	Pro-rich.						DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		TGTGCCACATCCCCCACCTTC	0.697000													9	8					0	0	1	0	0
NR1H2	7376	broad.mit.edu	37	19	50882336	50882336	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:50882336C>T	uc010enw.2	+	8	1104	c.828C>T	c.(826-828)ATC>ATT	p.I276I	NR1H2_uc002prv.3_Intron|NR1H2_uc002prz.3_Intron|NR1H2_uc002psa.3_Silent_p.I178I	NM_007121	NP_009052	P55055	NR1H2_HUMAN	nuclear receptor subfamily 1, group H, member 2	275	Ligand-binding (Potential).				negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of lipid transport|negative regulation of pinocytosis|negative regulation of transcription, DNA-dependent|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of triglyceride biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		AGCTGGCCATCATCTCAGTCC	0.642000													127	115					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51215327	51215327	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:51215327C>T	uc002psx.1	-	6	856	c.837G>A	c.(835-837)CGG>CGA	p.R279R		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	279	ANK 3.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GGGTCAGCCCCCGACGGTCCT	0.592000													41	61					0	0	1	0	0
KLK6	5653	broad.mit.edu	37	19	51465129	51465129	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:51465129G>A	uc002pui.2	-	6	713	c.453C>T	c.(451-453)TTC>TTT	p.F151F	KLK6_uc010eoj.2_Intron|KLK6_uc002puh.2_Silent_p.F160F|KLK6_uc002puj.2_Silent_p.F44F|KLK6_uc010ycn.1_Silent_p.F44F|KLK6_uc002pul.2_Silent_p.F151F|KLK6_uc002pum.2_Silent_p.F44F	NM_001012964	NP_001012982	Q92876	KLK6_HUMAN	kallikrein-related peptidase 6 isoform A	151	Peptidase S1.				amyloid precursor protein metabolic process|central nervous system development|collagen catabolic process|hormone metabolic process|myelination|positive regulation of G-protein coupled receptor protein signaling pathway|protein autoprocessing|proteolysis|regulation of cell differentiation|tissue regeneration	endoplasmic reticulum|extracellular region|microsome|mitochondrion|nucleolus	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00372)|GBM - Glioblastoma multiforme(134;0.00871)		TGGTGTCAGGGAAATCACCTG	0.587000													79	97					0	0	1	0	0
C19orf75	284369	broad.mit.edu	37	19	51768652	51768652	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:51768652C>A	uc002pwb.1	+	3	434	c.53C>A	c.(52-54)TCC>TAC	p.S18Y	C19orf75_uc010eov.1_Intron|C19orf75_uc010ycw.1_Intron	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	18						integral to membrane				ovary(1)|pancreas(1)	2						TCCTCTTGCTCCTTGGAGAAG	0.577000													132	131					1.51433e-70	1.5356e-70	1	1	0
SIGLEC10	89790	broad.mit.edu	37	19	51920574	51920574	+	Silent	SNP	G	A	A	rs142646348		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:51920574G>A	uc002pwo.2	-	2	799	c.183C>T	c.(181-183)TTC>TTT	p.F61F	SIGLEC10_uc002pwp.2_Silent_p.F61F|SIGLEC10_uc002pwq.2_Silent_p.F61F|SIGLEC10_uc002pwr.2_Silent_p.F61F|SIGLEC10_uc010ycy.1_Silent_p.F61F|SIGLEC10_uc010ycz.1_Silent_p.F61F|SIGLEC10_uc010eow.2_Intron|SIGLEC10_uc002pws.1_Silent_p.F45F	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	61	Extracellular (Potential).|Ig-like V-type.				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		TCACTGCTTTGAACCAGTAGC	0.597000													57	70					0	0	1	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51958874	51958874	+	Silent	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:51958874A>G	uc002pwt.2	-	4	916	c.849T>C	c.(847-849)TGT>TGC	p.C283C	SIGLEC8_uc010yda.1_Silent_p.C174C|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Silent_p.C190C	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	283	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TGTTGACAGCACAGACCAGGC	0.542000													4	150					0	0	1	0	0
CEACAM18	729767	broad.mit.edu	37	19	51986533	51986533	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:51986533G>A	uc002pwv.1	+	5	1119	c.1119G>A	c.(1117-1119)AGG>AGA	p.R373R		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	373	Ig-like C2-type.					integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TGGACGTCAGGATCCAGGCCC	0.597000													36	56					0	0	1	0	0
SIGLEC6	946	broad.mit.edu	37	19	52023351	52023351	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:52023351G>A	uc002pwy.2	-	8	1509	c.1347C>T	c.(1345-1347)ATC>ATT	p.I449I	SIGLEC6_uc002pwz.2_Silent_p.I433I|SIGLEC6_uc002pxa.2_3'UTR|SIGLEC6_uc010ydb.1_Silent_p.I386I|SIGLEC6_uc010ydc.1_3'UTR|SIGLEC6_uc010eoz.1_3'UTR	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	449	SLAM-like motif.|Cytoplasmic (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		TGTGTATCTTGATTTCTGAGT	0.398000													62	107					0	0	1	0	0
ZNF528	84436	broad.mit.edu	37	19	52919060	52919060	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:52919060C>T	uc002pzh.2	+	7	1381	c.955C>T	c.(955-957)CAT>TAT	p.H319Y	ZNF528_uc002pzi.2_Missense_Mutation_p.H86Y	NM_032423	NP_115799	Q3MIS6	ZN528_HUMAN	zinc finger protein 528	319	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(134;0.00249)|OV - Ovarian serous cystadenocarcinoma(262;0.00817)		TCAAAAAATTCATACTGGAGA	0.378000													36	60					0	0	1	0	0
ZNF534	147658	broad.mit.edu	37	19	52941587	52941587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:52941587C>T	uc002pzk.2	+	4	974	c.913C>T	c.(913-915)CAT>TAT	p.H305Y	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Missense_Mutation_p.H292Y	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	305	C2H2-type 4; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAGGAAAATTCATACTGGAGA	0.393000													30	34					0	0	1	0	0
LILRB4	11006	broad.mit.edu	37	19	55179210	55179210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:55179210G>A	uc002qgp.2	+	11	1528	c.1166G>A	c.(1165-1167)AGA>AAA	p.R389K	LILRB4_uc002qgq.2_Missense_Mutation_p.R388K|LILRB4_uc002qgr.2_Missense_Mutation_p.R431K|LILRB4_uc010ert.2_Missense_Mutation_p.R430K|LILRB4_uc010eru.2_Missense_Mutation_p.R419K	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	389	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		ACAAAGGACAGACAGGCAGAA	0.587000													39	69					0	0	1	0	0
FCAR	2204	broad.mit.edu	37	19	55396831	55396831	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:55396831C>T	uc002qhr.1	+	3	452	c.255C>T	c.(253-255)TTC>TTT	p.F85F	FCAR_uc002qhq.2_Silent_p.F85F|FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_Silent_p.F58F|FCAR_uc010esi.1_Silent_p.F58F|FCAR_uc002qhu.1_Silent_p.F85F|FCAR_uc002qhv.1_Silent_p.F85F|FCAR_uc002qhw.1_Silent_p.F73F|FCAR_uc002qhx.1_Silent_p.F73F|FCAR_uc002qhy.1_Silent_p.F73F|FCAR_uc002qhz.1_Silent_p.F73F|FCAR_uc002qia.1_Intron	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	85	Extracellular (Potential).|Ig-like C2-type 1.				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		ATCCTGAGTTCGTCATTGACC	0.488000													45	59					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55444986	55444986	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:55444986A>T	uc002qih.3	-	8	2669	c.2593T>A	c.(2593-2595)TTT>ATT	p.F865I	NLRP7_uc002qig.3_Missense_Mutation_p.F837I|NLRP7_uc002qii.3_Missense_Mutation_p.F865I|NLRP7_uc010esk.2_Missense_Mutation_p.F865I|NLRP7_uc010esl.2_Missense_Mutation_p.F893I	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	865	LRR 6.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TCACACAGAAACTTCACCCCT	0.512000													47	54					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56320494	56320494	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:56320494G>A	uc010ygf.1	-	5	2193	c.1482C>T	c.(1480-1482)TTC>TTT	p.F494F	NLRP11_uc002qlz.2_Silent_p.F395F|NLRP11_uc002qmb.2_Silent_p.F395F|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	494							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GACCAAAAATGAAAGTAAACA	0.418000													66	105					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56369832	56369832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:56369832G>A	uc002qmd.3	+	3	1495	c.1073G>A	c.(1072-1074)GGA>GAA	p.G358E	NLRP4_uc002qmf.2_Missense_Mutation_p.G283E|NLRP4_uc010etf.2_Missense_Mutation_p.G189E	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	358	NACHT.						ATP binding	p.G358R(1)		ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		ATGCAGAAAGGAAAAGACCTG	0.512000													28	48					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56466505	56466505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:56466505G>A	uc002qmh.2	+	3	1152	c.1081G>A	c.(1081-1083)GAA>AAA	p.E361K	NLRP8_uc010etg.2_Missense_Mutation_p.E361K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	361	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TAATACGATGGAAAAAATCAA	0.463000													84	112					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56467272	56467272	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:56467272C>T	uc002qmh.2	+	3	1919	c.1848C>T	c.(1846-1848)ATC>ATT	p.I616I	NLRP8_uc010etg.2_Silent_p.I616I	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	616						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TGCATGAAATCCGGGAGGAAG	0.443000													55	65					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56539800	56539800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:56539800G>A	uc002qmj.2	+	7	2201	c.2201G>A	c.(2200-2202)CGG>CAG	p.R734Q	NLRP5_uc002qmi.2_Missense_Mutation_p.R715Q	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	734	LRR 2.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CCGTATTTGCGGAAAATTCGG	0.507000													141	217					0	0	1	0	0
ZNF667	63934	broad.mit.edu	37	19	56969613	56969613	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:56969613A>T	uc002qnd.2	-	4	326	c.164T>A	c.(163-165)CTT>CAT	p.L55H	ZNF667_uc010etl.2_5'UTR|ZNF667_uc002qne.2_Missense_Mutation_p.L55H|ZNF667_uc010etm.2_5'UTR	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	55	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		CCGAAAGGAAAGACCTGTACG	0.498000													37	51					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57325315	57325315	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:57325315G>A	uc002qnu.2	-	7	4846	c.4495C>T	c.(4495-4497)CAG>TAG	p.Q1499*	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Nonsense_Mutation_p.Q1470*|PEG3_uc002qnv.2_Nonsense_Mutation_p.Q1499*|PEG3_uc002qnw.2_Nonsense_Mutation_p.Q1375*|PEG3_uc002qnx.2_Nonsense_Mutation_p.Q1373*|PEG3_uc010etr.2_Nonsense_Mutation_p.Q1499*	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1499	Glu-rich.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TCTTCTACCTGAATCTCTTGA	0.483000													84	131					0	0	1	0	0
ZNF749	388567	broad.mit.edu	37	19	57955885	57955885	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:57955885C>G	uc002qoq.2	+	3	1623	c.1369C>G	c.(1369-1371)CAG>GAG	p.Q457E	ZNF547_uc002qpm.3_Intron	NM_001023561	NP_001018855	O43361	ZN749_HUMAN	zinc finger protein 749	457	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)|Lung(386;0.177)		AGTTCAGCACCAGAAAATCCA	0.423000													3	123					0	0	1	0	0
NOL10	79954	broad.mit.edu	37	2	10729252	10729252	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:10729252G>A	uc002raq.2	-	19	1886	c.1761C>T	c.(1759-1761)GTC>GTT	p.V587V	NOL10_uc010yje.1_Silent_p.V561V|NOL10_uc010yjf.1_Silent_p.V537V|NOL10_uc002rap.2_Silent_p.V537V	NM_024894	NP_079170	Q9BSC4	NOL10_HUMAN	nucleolar protein 10	587	Potential.					nucleolus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.207)		GGGGCTTTAGGACTGTCTGCT	0.483000													47	77					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31178565	31178565	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:31178565C>T	uc002rnr.2	-	6	1192	c.573G>A	c.(571-573)CAG>CAA	p.Q191Q	GALNT14_uc002rnq.2_Silent_p.Q171Q|GALNT14_uc002rns.2_Silent_p.Q196Q|GALNT14_uc010ymr.1_Silent_p.Q156Q|GALNT14_uc010ezo.1_Silent_p.Q158Q|GALNT14_uc010ezp.1_Silent_p.Q162Q	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	191	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					GAGTGGTGCCCTGGGCGATGT	0.602000													37	56					0	0	1	0	0
EHD3	30845	broad.mit.edu	37	2	31483602	31483602	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:31483602C>T	uc002rnu.2	+	4	1337	c.729C>T	c.(727-729)ATC>ATT	p.I243I	EHD3_uc010ymt.1_Intron	NM_014600	NP_055415	Q9NZN3	EHD3_HUMAN	EH-domain containing 3	243					blood coagulation|endocytic recycling|protein homooligomerization	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					TGGGGAAGATCGTGAACACCC	0.592000													39	43					0	0	1	0	0
STRN	6801	broad.mit.edu	37	2	37111138	37111138	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:37111138C>A	uc002rpn.2	-	9	1132	c.1123G>T	c.(1123-1125)GGT>TGT	p.G375C	STRN_uc010ezx.2_Missense_Mutation_p.G338C	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	375					dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				GAAGGTGAACCCACAGATGGC	0.443000													35	32					7.53189e-24	7.60209e-24	1	1	0
SLC8A1	6546	broad.mit.edu	37	2	40366629	40366629	+	Silent	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:40366629T>G	uc002rrx.2	-	9	2481	c.2457A>C	c.(2455-2457)GGA>GGC	p.G819G	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Silent_p.G814G|SLC8A1_uc002rrz.2_Silent_p.G806G|SLC8A1_uc002rsa.2_Silent_p.G783G|SLC8A1_uc002rsd.3_Silent_p.G783G	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	819	Helical; (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	AAGCCAGGTCTCCAATGAAAG	0.507000													27	39					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40366799	40366799	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:40366799C>T	uc002rrx.2	-	9	2311	c.2287G>A	c.(2287-2289)GAT>AAT	p.D763N	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Missense_Mutation_p.D758N|SLC8A1_uc002rrz.2_Missense_Mutation_p.D750N|SLC8A1_uc002rsa.2_Missense_Mutation_p.D727N|SLC8A1_uc002rsd.3_Missense_Mutation_p.D727N	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	763	Cytoplasmic (Potential).|Poly-Asp.				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	CCACATTCATCGTCGTCATCA	0.502000													104	142					0	0	1	0	0
EML4	27436	broad.mit.edu	37	2	42508004	42508004	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:42508004A>G	uc002rsi.2	+	7	944	c.682A>G	c.(682-684)AAA>GAA	p.K228E	EML4_uc010fap.2_Missense_Mutation_p.K170E	NM_019063	NP_061936	Q9HC35	EMAL4_HUMAN	echinoderm microtubule associated protein like 4	228					microtubule-based process|mitosis	cytoplasm|microtubule	protein binding		EML4/ALK(246)	lung(246)|ovary(2)|central_nervous_system(1)|skin(1)	250						AGAATATATTAAAATGTTTAT	0.358000			T	ALK	NSCLC								23	26					0	0	1	0	0
TTC7A	57217	broad.mit.edu	37	2	47221588	47221588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:47221588G>A	uc002rvo.2	+	7	1304	c.936G>A	c.(934-936)ATG>ATA	p.M312I	TTC7A_uc002rvm.2_Missense_Mutation_p.M278I|TTC7A_uc002rvn.1_Missense_Mutation_p.M193I|TTC7A_uc010fbb.2_Missense_Mutation_p.M312I|TTC7A_uc010fbc.2_Intron|TTC7A_uc002rvp.2_Missense_Mutation_p.M193I|TTC7A_uc002rvq.2_Missense_Mutation_p.M52I|TTC7A_uc002rvr.2_5'UTR	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	312							binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			CTGAGTTCATGGGCAAGGAGG	0.612000													85	113					0	0	1	0	0
SMEK2	57223	broad.mit.edu	37	2	55786039	55786039	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:55786039A>T	uc002rzc.2	-	16	2701	c.2326T>A	c.(2326-2328)TTC>ATC	p.F776I	SMEK2_uc002rzb.2_Missense_Mutation_p.F691I|SMEK2_uc002rzd.2_Missense_Mutation_p.F744I|SMEK2_uc002ryz.2_Missense_Mutation_p.F203I|SMEK2_uc002rza.2_Missense_Mutation_p.F560I	NM_001122964	NP_001116436	Q5MIZ7	P4R3B_HUMAN	SMEK homolog 2, suppressor of mek1 isoform 1	776						microtubule organizing center|nucleus	protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			GAGTGGGAGAAAGTAAATTTG	0.393000													105	130					0	0	1	0	0
PUS10	150962	broad.mit.edu	37	2	61238962	61238962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:61238962G>A	uc010fci.2	-	2	124	c.64C>T	c.(64-66)CCA>TCA	p.P22S	PUS10_uc002sao.2_Missense_Mutation_p.P22S|PUS10_uc010ypk.1_5'UTR|PUS10_uc002sap.1_RNA|PUS10_uc002saq.1_RNA	NM_144709	NP_653310	Q3MIT2	PUS10_HUMAN	pseudouridylate synthase 10	22					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			ovary(2)|large_intestine(1)|kidney(1)	4			LUSC - Lung squamous cell carcinoma(5;1.56e-06)|Lung(5;2.48e-05)|Epithelial(17;0.113)			ATACATCTTGGACAAGTACCA	0.318000													29	48					0	0	1	0	0
BMP10	27302	broad.mit.edu	37	2	69093103	69093103	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:69093103G>A	uc002sez.1	-	2	1094	c.935C>T	c.(934-936)GCC>GTC	p.A312V		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	312					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						TCTGATTCGGGCAGTGGAGTC	0.522000													31	35					0	0	1	0	0
SMYD5	10322	broad.mit.edu	37	2	73450573	73450573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:73450573C>T	uc002siw.2	+	9	825	c.796C>T	c.(796-798)CAT>TAT	p.H266Y	SMYD5_uc010yre.1_Missense_Mutation_p.H150Y|SMYD5_uc002six.1_RNA	NM_006062	NP_006053	Q6GMV2	SMYD5_HUMAN	SMYD family member 5	266	SET.						metal ion binding				0						CCAGTGGGTCCATGCCTGTGA	0.592000													83	113					0	0	1	0	0
EGR4	1961	broad.mit.edu	37	2	73518830	73518830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:73518830C>T	uc010yrj.1	-	2	1600	c.1525G>A	c.(1525-1527)GGC>AGC	p.G509S	EGR4_uc010yrk.1_Missense_Mutation_p.G508S	NM_001965	NP_001956	Q05215	EGR4_HUMAN	early growth response 4	405						intracellular	nucleic acid binding|zinc ion binding				0						GGTTTGTGGCCCGTGTGGATG	0.672000													31	77					0	0	1	0	0
ACTG2	72	broad.mit.edu	37	2	74143732	74143732	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:74143732A>C	uc002sjw.2	+	8	949	c.827A>C	c.(826-828)CAT>CCT	p.H276P	ACTG2_uc010fey.2_Missense_Mutation_p.H276P|ACTG2_uc010yrn.1_Missense_Mutation_p.H233P	NM_001615	NP_001606	P63267	ACTH_HUMAN	actin, gamma 2 propeptide	276					muscle contraction	cytoskeleton|cytosol	ATP binding				0						GCTGGAATTCATGAGACAACC	0.488000													31	33					0	0	1	0	0
TET3	200424	broad.mit.edu	37	2	74328695	74328695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:74328695G>A	uc002skb.3	+	9	4375	c.4375G>A	c.(4375-4377)GGG>AGG	p.G1459R		NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	1459							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GAAGCTGTTTGGGGCTCTGAA	0.657000													5	6					0	0	1	0	0
REG1A	5967	broad.mit.edu	37	2	79350013	79350013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:79350013C>T	uc002snz.2	+	5	471	c.368C>T	c.(367-369)TCC>TTC	p.S123F	REG1A_uc010ysd.1_Missense_Mutation_p.S123F	NM_002909	NP_002900	P05451	REG1A_HUMAN	regenerating islet-derived 1 alpha precursor	123	C-type lectin.				positive regulation of cell proliferation	extracellular region	growth factor activity|sugar binding				0						TCCTACAAGTCCTGGGGCATT	0.547000													81	129					0	0	1	0	0
RNF103	7844	broad.mit.edu	37	2	86831436	86831436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:86831436C>T	uc002srn.2	-	4	2557	c.1588G>A	c.(1588-1590)GAG>AAG	p.E530K	VPS24_uc010ytl.1_Intron|RNF103_uc002srm.2_Missense_Mutation_p.E391K|uc002sro.2_RNA	NM_005667	NP_005658	O00237	RN103_HUMAN	ring finger protein 103	530					central nervous system development|ER-associated protein catabolic process	endoplasmic reticulum membrane|integral to membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(1)	1						TGAGACCCCTCCGACATTTCC	0.403000													180	251					0	0	1	0	0
RGPD1	400966	broad.mit.edu	37	2	88125213	88125213	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:88125213G>A	uc010fhc.1	-	1	103	c.36C>T	c.(34-36)CTC>CTT	p.L12L		NM_001024457	NP_001019628	Q68DN6	RGPD1_HUMAN	RANBP2-like and GRIP domain containing 1	Error:Variant_position_missing_in_Q68DN6_after_alignment					intracellular transport		binding				0						GCACCGAGGCGAGGTACCGCT	0.537000													13	26					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89399415	89399415	+	RNA	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:89399415G>A	uc010ytr.1	-	46		c.5030C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GGCTGCTGATGGTGAGAGTGA	0.493000													65	137					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89513052	89513052	+	RNA	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:89513052C>T	uc010ytr.1	-	23		c.2836G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CAGCATAGATCAGGAGCTTAG	0.522000													79	217					0	0	1	0	0
ADRA2B	151	broad.mit.edu	37	2	96781075	96781075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:96781075G>A	uc002svi.2	-	1	814	c.814C>T	c.(814-816)CCC>TCC	p.P272S		NM_000682	NP_000673	P18089	ADA2B_HUMAN	alpha-2B-adrenergic receptor	272	Cytoplasmic (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation	integral to plasma membrane	alpha2-adrenergic receptor activity|epinephrine binding|protein binding			ovary(2)|lung(1)	3					Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	GCCCAACTGGGTGGCAAGGCC	0.547000													11	20					0	0	1	0	0
IL1R2	7850	broad.mit.edu	37	2	102632434	102632434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:102632434C>T	uc002tbm.2	+	4	663	c.434C>T	c.(433-435)TCA>TTA	p.S145L	IL1R2_uc002tbn.2_Missense_Mutation_p.S145L|IL1R2_uc002tbo.1_Missense_Mutation_p.S145L	NM_004633	NP_004624	P27930	IL1R2_HUMAN	interleukin 1 receptor, type II precursor	145	Extracellular (Potential).|Ig-like C2-type 2.				immune response	integral to membrane|plasma membrane	interleukin-1, Type II, blocking receptor activity			ovary(1)|breast(1)	2					Anakinra(DB00026)	TTAACCTTGTCAACCTCTGGG	0.418000													44	55					0	0	1	0	0
IL18RAP	8807	broad.mit.edu	37	2	103040339	103040339	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:103040339G>A	uc002tbx.2	+	4	623	c.139G>A	c.(139-141)GAT>AAT	p.D47N	IL18RAP_uc010fiz.2_Intron	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	47	Extracellular (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						CTTATTTTGTGATTTACCAGA	0.398000													26	33					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103121867	103121867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:103121867C>T	uc002tbz.3	+	4	1592	c.1135C>T	c.(1135-1137)CAC>TAC	p.H379Y		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	379	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						GGGCAAGAATCACGAGTGGAA	0.537000													54	80					0	0	1	0	0
SULT1C2	6819	broad.mit.edu	37	2	108921046	108921046	+	Missense_Mutation	SNP	G	A	A	rs139416622	byFrequency	TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:108921046G>A	uc002tdy.2	+	5	845	c.392G>A	c.(391-393)CGA>CAA	p.R131Q	SULT1C2_uc010ywp.1_Missense_Mutation_p.R46Q|SULT1C2_uc002tdx.2_Missense_Mutation_p.R142Q|SULT1C2_uc010ywq.1_Missense_Mutation_p.R145Q	NM_001056	NP_001047	O00338	ST1C2_HUMAN	sulfotransferase family, cytosolic, 1C, member 1	131	PAPS (By similarity).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine metabolic process|sulfation|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	sulfotransferase activity			ovary(1)	1						TATGTAGCTCGAAATGCCAAA	0.438000													91	148					0	0	1	0	0
SULT1C4	27233	broad.mit.edu	37	2	108998302	108998302	+	Missense_Mutation	SNP	G	A	A	rs137946991		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:108998302G>A	uc002tea.1	+	2	627	c.254G>A	c.(253-255)CGA>CAA	p.R85Q	SULT1C4_uc002tdz.2_Missense_Mutation_p.R85Q|SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Missense_Mutation_p.R85Q	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	85					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						ACTCATCAACGATTTCCTTTC	0.398000													45	66					0	0	1	0	0
GCC2	9648	broad.mit.edu	37	2	109087301	109087302	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:109087301_109087302GA>TT	uc002tec.2	+	6	1670_1671	c.1516_1517GA>TT	c.(1516-1518)GAA>TTA	p.E506L	GCC2_uc002ted.2_Missense_Mutation_p.E405L	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	506	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						TCAAGAGTTCGAATCAATGAAG	0.223000													70	100					0	0	1	0	0
ZC3H6	376940	broad.mit.edu	37	2	113067660	113067660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:113067660G>A	uc002thq.1	+	4	929	c.535G>A	c.(535-537)GAA>AAA	p.E179K		NM_198581	NP_940983	P61129	ZC3H6_HUMAN	zinc finger CCCH-type domain containing 6	179							nucleic acid binding|zinc ion binding			ovary(3)|central_nervous_system(1)	4						GCAAGCTAAAGAAACCTCAAA	0.373000													15	18					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119732117	119732117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:119732117C>T	uc002tln.1	+	6	721	c.589C>T	c.(589-591)CCA>TCA	p.P197S	MARCO_uc010yyf.1_Missense_Mutation_p.P119S	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	197	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity	p.P197R(1)		ovary(3)|skin(2)|central_nervous_system(1)	6						ACCCCAAGGCCCACCGGGAGT	0.552000													20	32					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119750786	119750786	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:119750786T>G	uc002tln.1	+	16	1471	c.1339T>G	c.(1339-1341)TGC>GGC	p.C447G	MARCO_uc010yyf.1_Missense_Mutation_p.C369G	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	447	SRCR.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GGGGACAATTTGCGATGACGA	0.517000													103	168					0	0	1	0	0
MIR663B	100302269	broad.mit.edu	37	2	133014567	133014567	+	RNA	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:133014567G>A	hsa-mir-663b|MI0006336	-			c.87G>A			NCRNA00164_uc002ttj.3_Intron																	0						GGGCCACCAGGAAAACACGGC	0.721000													10	45					0	0	1	0	0
GPR39	2863	broad.mit.edu	37	2	133175311	133175311	+	Silent	SNP	C	T	T	rs144877200		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:133175311C>T	uc002ttl.2	+	1	1165	c.696C>T	c.(694-696)CTC>CTT	p.L232L		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	232	Helical; Name=5; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						TGGTCTACCTCGTGGTCCTGC	0.617000													56	60					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141986896	141986896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:141986896G>A	uc002tvj.1	-	6	1678	c.706C>T	c.(706-708)CAT>TAT	p.H236Y	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	236	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCCAGAGTATGAATTTCATTT	0.303000										TSP Lung(27;0.18)			24	34					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152370931	152370931	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:152370931C>T	uc010fnx.2	-	131	18116	c.17925G>A	c.(17923-17925)AGG>AGA	p.R5975R	NEB_uc002txr.2_Silent_p.R2398R|NEB_uc002txt.3_Silent_p.R480R	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5975	Nebulin 163.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTAGATCTTTCCTGTACTCTT	0.393000													105	142					0	0	1	0	0
RBMS1	5937	broad.mit.edu	37	2	161143509	161143509	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:161143509G>C	uc002ubo.2	-	7	1171	c.727C>G	c.(727-729)CCA>GCA	p.P243A	RBMS1_uc002ubj.2_Missense_Mutation_p.P210A|RBMS1_uc002ubk.2_Missense_Mutation_p.P210A|RBMS1_uc002ubl.2_Missense_Mutation_p.P241A|RBMS1_uc002ubn.2_Missense_Mutation_p.P243A|RBMS1_uc002ubi.3_Missense_Mutation_p.P243A|RBMS1_uc002ubm.2_Missense_Mutation_p.P210A|RBMS1_uc002ubp.2_Missense_Mutation_p.P243A|RBMS1_uc010fox.2_Missense_Mutation_p.P243A	NM_016836	NP_058520	P29558	RBMS1_HUMAN	RNA binding motif, single stranded interacting	243					DNA replication|RNA processing	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding|single-stranded DNA binding				0						CTATGCCATGGTCTTCCATTA	0.453000													115	157					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163291946	163291946	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:163291946C>T	uc002uch.1	-	8	1928	c.1716G>A	c.(1714-1716)GCG>GCA	p.A572A	KCNH7_uc002uci.2_Silent_p.A565A	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	572	Extracellular (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CATTCCCAATCGCATACCAAA	0.443000													43	75					0	0	1	0	0
CSRNP3	80034	broad.mit.edu	37	2	166535621	166535621	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:166535621G>A	uc002udf.2	+	7	1492	c.1116G>A	c.(1114-1116)GAG>GAA	p.E372E	CSRNP3_uc002udg.2_Silent_p.E372E	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	372	Glu-rich.				apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						CAGACgaggaggaggaggaag	0.428000													54	61					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166892933	166892933	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:166892933C>T	uc010zcz.1	-	16	3039	c.3021G>A	c.(3019-3021)AGG>AGA	p.R1007R	SCN1A_uc002udo.3_Silent_p.R887R|SCN1A_uc010fpk.2_Silent_p.R859R	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1018	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CTTTGTGCATCCTATCCACAG	0.348000													26	28					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166894560	166894560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:166894560C>T	uc010zcz.1	-	15	2657	c.2639G>A	c.(2638-2640)GGA>GAA	p.G880E	SCN1A_uc002udo.3_Missense_Mutation_p.G760E|SCN1A_uc010fpk.2_Missense_Mutation_p.G732E	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	891	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GGTTAAATTTCCCAGAGCCCC	0.443000													45	68					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168101647	168101647	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:168101647G>A	uc002udx.2	+	8	3763	c.3745G>A	c.(3745-3747)GAT>AAT	p.D1249N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D1074N|XIRP2_uc010fpq.2_Missense_Mutation_p.D1027N|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1074	Xin 20.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CCAACCAATTGATAAGATAAA	0.343000													44	56					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168107590	168107590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:168107590C>T	uc002udx.2	+	8	9706	c.9688C>T	c.(9688-9690)CGT>TGT	p.R3230C	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.R3055C|XIRP2_uc010fpq.2_Missense_Mutation_p.R3008C|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3055					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GATAGAAACTCGTGGTAGGGA	0.448000													47	46					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170077059	170077059	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:170077059G>C	uc002ues.2	-	34	5766	c.5553C>G	c.(5551-5553)CAC>CAG	p.H1851Q		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1851	Extracellular (Potential).|LDL-receptor class B 16.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TGATATCTCCGTGGAGTGTCA	0.403000													16	26					0	0	1	0	0
PPIG	9360	broad.mit.edu	37	2	170470977	170470977	+	Silent	SNP	A	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:170470977A>T	uc002uez.2	+	8	601	c.381A>T	c.(379-381)ACA>ACT	p.T127T	PPIG_uc010fpx.2_Silent_p.T112T|PPIG_uc010fpy.2_Silent_p.T123T|PPIG_uc002ufa.2_Silent_p.T127T|PPIG_uc002ufb.2_Silent_p.T127T|PPIG_uc002ufc.1_Silent_p.T127T|PPIG_uc002ufd.2_Silent_p.T127T	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	127	PPIase cyclophilin-type.				protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	CCAAAAGAACAACGAAACCAA	0.239000													33	52					0	0	1	0	0
PLEKHA3	65977	broad.mit.edu	37	2	179360349	179360349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:179360349C>T	uc002umn.2	+	5	975	c.577C>T	c.(577-579)CCC>TCC	p.P193S		NM_019091	NP_061964	Q9HB20	PKHA3_HUMAN	pleckstrin homology domain containing, family A	193						cytoplasm|membrane				ovary(1)|kidney(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0112)|Epithelial(96;0.0266)|all cancers(119;0.0865)			CCATCCGGATCCCTTAGTTTC	0.418000													116	153					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179433974	179433974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:179433974C>T	uc010zfg.1	-	275	69405	c.69181G>A	c.(69181-69183)GGG>AGG	p.G23061R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G16756R|TTN_uc010zfi.1_Missense_Mutation_p.G16689R|TTN_uc010zfj.1_Missense_Mutation_p.G16564R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23988							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGGATCCCCCATCCAACAAA	0.393000													125	207					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179440691	179440691	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:179440691T>C	uc010zfg.1	-	275	62688	c.62464A>G	c.(62464-62466)AAC>GAC	p.N20822D	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.N14517D|TTN_uc010zfi.1_Missense_Mutation_p.N14450D|TTN_uc010zfj.1_Missense_Mutation_p.N14325D|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21749							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTTCAATGTTGGCTCGGTTT	0.403000													103	156					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179446457	179446457	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:179446457G>C	uc010zfg.1	-	265	59058	c.58834C>G	c.(58834-58836)CCA>GCA	p.P19612A	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P13307A|TTN_uc010zfi.1_Missense_Mutation_p.P13240A|TTN_uc010zfj.1_Missense_Mutation_p.P13115A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20539							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCATAGGCTGGCTTGCCCCAA	0.473000													8	11					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179498297	179498297	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:179498297G>A	uc010zfg.1	-	181	35309	c.35085C>T	c.(35083-35085)TTC>TTT	p.F11695F	TTN_uc010zfh.1_Silent_p.F5390F|TTN_uc010zfi.1_Silent_p.F5323F|TTN_uc010zfj.1_Silent_p.F5198F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12622							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACCATCTTTGAACCATTTCA	0.408000													25	42					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179613357	179613357	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:179613357G>A	uc002unb.2	-	46	13994	c.13770C>T	c.(13768-13770)TTC>TTT	p.F4590F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTAATTCTTGGAATTTCACAT	0.323000													75	131					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179635288	179635288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:179635288C>T	uc010zfg.1	-	35	8455	c.8231G>A	c.(8230-8232)GGA>GAA	p.G2744E	TTN_uc010zfh.1_Missense_Mutation_p.G2698E|TTN_uc010zfi.1_Missense_Mutation_p.G2698E|TTN_uc010zfj.1_Missense_Mutation_p.G2698E|TTN_uc002unb.2_Missense_Mutation_p.G2744E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2744							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGCACAACTCCATTTTTGAT	0.413000													89	119					0	0	1	0	0
ZNF385B	151126	broad.mit.edu	37	2	180634386	180634386	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:180634386A>T	uc002unn.3	-	3	701	c.97T>A	c.(97-99)TTC>ATC	p.F33I		NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	33						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			CAGAAGGAGAAAAGAATTTTC	0.473000													65	65					0	0	1	0	0
DNAJC10	54431	broad.mit.edu	37	2	183621060	183621060	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:183621060T>G	uc002uow.1	+	18	2088	c.1673T>G	c.(1672-1674)GTG>GGG	p.V558G	DNAJC10_uc002uox.1_RNA|DNAJC10_uc002uoy.1_RNA|DNAJC10_uc002uoz.1_Missense_Mutation_p.V512G|DNAJC10_uc010fro.1_RNA	NM_018981	NP_061854	Q8IXB1	DJC10_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 10	558	Thioredoxin 3.				apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|ER-associated protein catabolic process|glycerol ether metabolic process|negative regulation of protein phosphorylation|protein folding|response to endoplasmic reticulum stress	endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|extracellular region	ATPase activator activity|ATPase binding|chaperone binding|electron carrier activity|heat shock protein binding|misfolded protein binding|protein disulfide oxidoreductase activity|unfolded protein binding			ovary(1)|large_intestine(1)|breast(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			AATCCTTCAGTGGTCTCCCTT	0.378000													59	106					0	0	1	0	0
COL5A2	1290	broad.mit.edu	37	2	189927626	189927626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:189927626C>T	uc002uqk.2	-	29	2217	c.1942G>A	c.(1942-1944)GGT>AGT	p.G648S	COL5A2_uc010frx.2_Missense_Mutation_p.G224S	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	648					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CCAACTTCACCATCTTTTCCA	0.383000													67	83					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197172734	197172734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:197172734C>T	uc002utm.1	-	11	2693	c.2510G>A	c.(2509-2511)CGA>CAA	p.R837Q	HECW2_uc002utl.1_Missense_Mutation_p.R481Q	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	837	Interaction with TP73.|WW 1.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						AGCTGTCGGTCGCTGCCACGT	0.567000													46	57					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197172778	197172778	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:197172778C>T	uc002utm.1	-	11	2649	c.2466G>A	c.(2464-2466)AGG>AGA	p.R822R	HECW2_uc002utl.1_Silent_p.R466R	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	822	Interaction with TP73.|WW 1.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CGTAGAAGATCCTGCCGTGGC	0.532000													22	30					0	0	1	0	0
PGAP1	80055	broad.mit.edu	37	2	197784778	197784778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:197784778G>A	uc002utw.2	-	2	358	c.244C>T	c.(244-246)CCT>TCT	p.P82S	PGAP1_uc002utx.2_5'UTR|PGAP1_uc002uty.1_Missense_Mutation_p.P82S|PGAP1_uc010zgv.1_RNA|PGAP1_uc010fsj.2_5'UTR	NM_024989	NP_079265	Q75T13	PGAP1_HUMAN	GPI deacylase	82	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|intracellular protein transport|myo-inositol transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	nuclease activity|phosphoric ester hydrolase activity			ovary(3)|central_nervous_system(1)	4						CCCGTCAAAGGGAGAATTTTG	0.373000													59	92					0	0	1	0	0
NOP58	51602	broad.mit.edu	37	2	203142701	203142701	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:203142701C>T	uc002uzb.2	+	3	301	c.151C>T	c.(151-153)CAG>TAG	p.Q51*	NOP58_uc010zhv.1_Nonsense_Mutation_p.Q51*	NM_015934	NP_057018	Q9Y2X3	NOP58_HUMAN	NOP58 ribonucleoprotein homolog	51					cell growth|rRNA processing|snRNP protein import into nucleus	box C/D snoRNP complex|Cajal body|cytoplasm|pre-snoRNP complex	protein binding|snoRNA binding				0						TGAGAAATTTCAGGATACAGC	0.308000													54	100					0	0	1	0	0
FAM117B	150864	broad.mit.edu	37	2	203620295	203620295	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:203620295T>G	uc010zhx.1	+	5	1005	c.995T>G	c.(994-996)ATT>AGT	p.I332S		NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	332										ovary(1)	1						ATTCCTGTAATTCCCATCACC	0.413000													82	126					0	0	1	0	0
PTH2R	5746	broad.mit.edu	37	2	209302574	209302574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:209302574C>T	uc002vdb.2	+	4	592	c.379C>T	c.(379-381)CGC>TGC	p.R127C	PTH2R_uc010zjb.1_Missense_Mutation_p.R138C	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	127	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		AGACTGCCTTCGCTTTCTGCA	0.378000													42	84					0	0	1	0	0
IKZF2	22807	broad.mit.edu	37	2	213914511	213914511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:213914511G>A	uc002vem.2	-	5	669	c.500C>T	c.(499-501)CCG>CTG	p.P167L	IKZF2_uc010fuu.2_Intron|IKZF2_uc002vej.2_Missense_Mutation_p.P114L|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Missense_Mutation_p.P141L|IKZF2_uc002vel.2_Missense_Mutation_p.P88L|IKZF2_uc010fuw.2_5'UTR|IKZF2_uc010fux.2_5'UTR|IKZF2_uc010fuy.2_Missense_Mutation_p.P141L|IKZF2_uc002ven.2_Missense_Mutation_p.P141L	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	167					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		ACATTTGAACGGCTTCTCTCC	0.502000													31	40					0	0	1	0	0
TNS1	7145	broad.mit.edu	37	2	218712502	218712502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:218712502G>A	uc002vgt.2	-	17	2761	c.2363C>T	c.(2362-2364)CCT>CTT	p.P788L	TNS1_uc002vgr.2_Missense_Mutation_p.P788L|TNS1_uc002vgs.2_Missense_Mutation_p.P788L|TNS1_uc010zjv.1_Missense_Mutation_p.P788L|TNS1_uc010fvj.1_Missense_Mutation_p.P856L|TNS1_uc010fvk.1_Missense_Mutation_p.P913L|TNS1_uc010fvi.1_Missense_Mutation_p.P475L	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	788						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		CCTGCCAGGAGGGACAGACTC	0.577000													49	79					0	0	1	0	0
CXCR2	3579	broad.mit.edu	37	2	219000374	219000374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:219000374G>A	uc002vgz.1	+	4	1075	c.850G>A	c.(850-852)GAG>AAG	p.E284K	CXCR2_uc002vha.1_Missense_Mutation_p.E284K|CXCR2_uc002vhb.1_Missense_Mutation_p.E284K	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	284	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						GGTGATCCAGGAGACCTGTGA	0.597000													50	56					0	0	1	0	0
SLC4A3	6508	broad.mit.edu	37	2	220494117	220494117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:220494117C>T	uc002vmp.3	+	4	738	c.469C>T	c.(469-471)CCC>TCC	p.P157S	SLC4A3_uc002vmn.2_Missense_Mutation_p.H157Y|SLC4A3_uc002vmo.3_Missense_Mutation_p.P157S|SLC4A3_uc010fwm.2_5'UTR|SLC4A3_uc010fwn.1_5'Flank	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	157	Pro-rich.|Cytoplasmic.				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGAGCCCCCCCACTCAGGGAC	0.537000													6	6					0	0	1	0	0
EPHA4	2043	broad.mit.edu	37	2	222428631	222428631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:222428631G>A	uc002vmq.2	-	3	685	c.643C>T	c.(643-645)CCT>TCT	p.P215S	EPHA4_uc002vmr.2_Missense_Mutation_p.P215S|EPHA4_uc010zlm.1_Missense_Mutation_p.P156S|EPHA4_uc010zln.1_Missense_Mutation_p.P215S	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	215	Cys-rich.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		ATGGTGTCAGGAAACTGGGCC	0.512000													76	113					0	0	1	0	0
SCG2	7857	broad.mit.edu	37	2	224462739	224462739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:224462739C>T	uc002vnm.2	-	2	1395	c.1262G>A	c.(1261-1263)CGT>CAT	p.R421H		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	421					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		AGTCCCAGCACGACCAGGTGT	0.483000													60	62					0	0	1	0	0
SCG2	7857	broad.mit.edu	37	2	224462785	224462785	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:224462785G>A	uc002vnm.2	-	2	1349	c.1216C>T	c.(1216-1218)CAA>TAA	p.Q406*		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	406					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		ATCCTATTTTGGAACAGGTCT	0.517000													50	70					0	0	1	0	0
IRS1	3667	broad.mit.edu	37	2	227661055	227661055	+	Nonsense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:227661055A>C	uc002voh.3	-	1	2452	c.2400T>G	c.(2398-2400)TAT>TAG	p.Y800*		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	800					fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		CTGTTGCAGCATAGAGAAGGC	0.632000													102	135					0	0	1	0	0
COL4A3	1285	broad.mit.edu	37	2	228155475	228155475	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:228155475A>G	uc002vom.1	+	37	3245	c.3083A>G	c.(3082-3084)AAA>AGA	p.K1028R	COL4A3_uc002von.1_Missense_Mutation_p.K1028R|COL4A3_uc002voo.1_Missense_Mutation_p.K1028R|COL4A3_uc002vop.1_Missense_Mutation_p.K1028R|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	1028	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		TCTAAAGGAAAAAGGGGAACT	0.428000													27	25					0	0	1	0	0
SLC19A3	80704	broad.mit.edu	37	2	228563527	228563527	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:228563527G>A	uc002vpi.2	-	3	993	c.904C>T	c.(904-906)CTG>TTG	p.L302L	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Silent_p.L298L	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	302	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	TAATCCCACAGGATTTGAACA	0.443000													35	54					0	0	1	0	0
SLC19A3	80704	broad.mit.edu	37	2	228563864	228563864	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:228563864G>A	uc002vpi.2	-	3	656	c.567C>T	c.(565-567)TTC>TTT	p.F189F	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Silent_p.F185F	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	189	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	GCATTGGTAGGAAAAGTGAGA	0.443000													42	62					0	0	1	0	0
SP140	11262	broad.mit.edu	37	2	231157430	231157430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:231157430G>A	uc002vql.2	+	20	2010	c.1895G>A	c.(1894-1896)GGA>GAA	p.G632E	SP140_uc010zma.1_RNA|SP140_uc002vqn.2_Missense_Mutation_p.G518E|SP140_uc002vqm.2_Missense_Mutation_p.G572E|SP140_uc010fxl.2_Missense_Mutation_p.G605E	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	632	SAND.				defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		GAAATCAAAGGAGGCCATGCA	0.522000													55	66					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	234106796	234106796	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:234106796G>A	uc010zmo.1	+	24	2902	c.2749G>A	c.(2749-2751)GGA>AGA	p.G917R	INPP5D_uc010zmp.1_Missense_Mutation_p.G916R	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	917					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CAACTACATGGGAGTGGGGCC	0.622000													23	25					0	0	1	0	0
IQCA1	79781	broad.mit.edu	37	2	237300953	237300953	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:237300953C>T	uc002vvz.1	-	10	1433	c.1251G>A	c.(1249-1251)CAG>CAA	p.Q417Q	IQCA1_uc002vwb.2_Silent_p.Q424Q|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Silent_p.Q376Q	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	417	Lys-rich.						ATP binding			ovary(1)	1						GATCATAGTCCTGAGAGAAAT	0.338000													3	7					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9560890	9560890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:9560890G>A	uc002wnl.2	-	5	1437	c.892C>T	c.(892-894)CCA>TCA	p.P298S	PAK7_uc002wnk.2_Missense_Mutation_p.P298S|PAK7_uc002wnj.2_Missense_Mutation_p.P298S|PAK7_uc010gby.1_Missense_Mutation_p.P298S	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	298	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GCTCCAAATGGCATCATCGGT	0.547000													123	178					0	0	1	0	0
SPTLC3	55304	broad.mit.edu	37	20	12989926	12989926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:12989926C>T	uc002wod.1	+	1	300	c.11C>T	c.(10-12)CCT>CTT	p.P4L	SPTLC3_uc002wob.1_RNA|SPTLC3_uc002woc.2_Missense_Mutation_p.P4L	NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	4					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	ATGGCTAACCCTGGAGGTGGT	0.488000													73	106					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19662553	19662553	+	Silent	SNP	G	A	A	rs35797096		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:19662553G>A	uc002wrl.2	+	10	1016	c.819G>A	c.(817-819)GGG>GGA	p.G273G		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	273	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						AAGGTGCCGGGAACATGGTCA	0.468000													55	84					0	0	1	0	0
SSTR4	6754	broad.mit.edu	37	20	23016354	23016354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:23016354G>A	uc002wsr.2	+	1	298	c.234G>A	c.(232-234)ATG>ATA	p.M78I		NM_001052	NP_001043	P31391	SSR4_HUMAN	somatostatin receptor 4	78	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			ovary(1)	1	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)					ACGCCAAGATGAAGACGGCTA	0.607000													107	162					0	0	1	0	0
CD93	22918	broad.mit.edu	37	20	23064935	23064935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:23064935G>A	uc002wsv.2	-	1	2043	c.1895C>T	c.(1894-1896)CCA>CTA	p.P632L		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	632	Cytoplasmic (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					AGCTCGCTCTGGAACCCAGGA	0.612000													119	141					0	0	1	0	0
CST9L	128821	broad.mit.edu	37	20	23548955	23548955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:23548955G>A	uc002wtk.3	-	1	432	c.133C>T	c.(133-135)CGT>TGT	p.R45C		NM_080610	NP_542177	Q9H4G1	CST9L_HUMAN	cystatin 9-like precursor	45						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					GGGAGGTAACGAGCCATGACA	0.522000													58	55					0	0	1	0	0
ENTPD6	955	broad.mit.edu	37	20	25197351	25197351	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:25197351C>T	uc002wuj.2	+	8	957	c.777C>T	c.(775-777)ATC>ATT	p.I259I	ENTPD6_uc010zsy.1_Silent_p.I259I|ENTPD6_uc010gdj.1_Silent_p.I231I|ENTPD6_uc010zsz.1_Silent_p.I41I|ENTPD6_uc002wum.2_Silent_p.I242I|ENTPD6_uc010zta.1_Silent_p.I259I|ENTPD6_uc002wun.2_Silent_p.I259I|ENTPD6_uc002wuk.2_Silent_p.I258I|ENTPD6_uc002wul.2_Silent_p.I258I|ENTPD6_uc010ztb.1_Silent_p.I231I|ENTPD6_uc010ztc.1_Silent_p.I231I|ENTPD6_uc002wuo.2_Silent_p.I11I|ENTPD6_uc010ztd.1_Silent_p.I41I	NM_001247	NP_001238	O75354	ENTP6_HUMAN	ectonucleoside triphosphate diphosphohydrolase 6	259	Lumenal (Potential).					Golgi membrane|integral to membrane	nucleoside-diphosphatase activity				0						CCACTCAGATCGCCTTCCTGC	0.642000													11	16					0	0	1	0	0
HCK	3055	broad.mit.edu	37	20	30689321	30689321	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:30689321G>A	uc002wxh.2	+	13	1751	c.1580G>A	c.(1579-1581)TGA>TAA	p.*527*	HCK_uc010gdy.2_Silent_p.*506*|HCK_uc002wxi.2_Silent_p.*505*	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	527					interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CAGCAGCCATGATAGGGAGGA	0.627000													16	18					0	0	1	0	0
C20orf132	140699	broad.mit.edu	37	20	35749341	35749341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:35749341C>T	uc010zvu.1	-	18	2196	c.2105G>A	c.(2104-2106)GGA>GAA	p.G702E	C20orf132_uc002xgk.2_Missense_Mutation_p.G324E	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	Error:Variant_position_missing_in_Q9H579_after_alignment											0		Myeloproliferative disorder(115;0.00878)				GCCATCTTTTCCTCCCAGGAG	0.453000													32	46					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41514563	41514563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:41514563G>A	uc002xkg.2	-	2	282	c.98C>T	c.(97-99)TCC>TTC	p.S33F	PTPRT_uc010ggj.2_Missense_Mutation_p.S33F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	33	Extracellular (Potential).|MAM.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CTCATCAAAGGAACAGCCACC	0.478000													40	75					0	0	1	0	0
JPH2	57158	broad.mit.edu	37	20	42788384	42788384	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:42788384T>G	uc002xli.1	-	2	1916	c.1043A>C	c.(1042-1044)AAG>ACG	p.K348T		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	348	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CTTGGTGTCCTTGACCAGCAC	0.672000													40	53					0	0	1	0	0
SEMG2	6407	broad.mit.edu	37	20	43851361	43851361	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:43851361A>C	uc010ggz.2	+	2	1145	c.1088A>C	c.(1087-1089)AAG>ACG	p.K363T	SEMG2_uc002xnk.2_Missense_Mutation_p.K363T|SEMG2_uc002xnl.2_Missense_Mutation_p.K363T	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	363	Repeat-rich region.|4 X 60 AA tandem repeats, type I.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				TGTGGAGAAAAGGGCATCCAG	0.383000													51	58					0	0	1	0	0
NCOA5	57727	broad.mit.edu	37	20	44691164	44691164	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:44691164G>A	uc002xrd.2	-	7	2043	c.1515C>T	c.(1513-1515)TCC>TCT	p.S505S	NCOA5_uc002xrc.2_3'UTR|NCOA5_uc002xre.2_Silent_p.S505S	NM_020967	NP_066018	Q9HCD5	NCOA5_HUMAN	nuclear receptor coactivator 5	505	Transcription activation.				regulation of transcription, DNA-dependent|transcription, DNA-dependent|translation	nucleus	aminoacyl-tRNA ligase activity|ATP binding			central_nervous_system(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				AAAGCCCTTGGGAAGGAGCCC	0.547000													23	33					0	0	1	0	0
CDH22	64405	broad.mit.edu	37	20	44839107	44839107	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:44839107G>A	uc002xrm.2	-	6	1526	c.1125C>T	c.(1123-1125)TTC>TTT	p.F375F	CDH22_uc010ghk.1_Silent_p.F375F|CDH22_uc002xrn.1_Silent_p.F126F	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	375	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				CCTGGTCGCGGAACGTGCCCA	0.711000													20	21					0	0	1	0	0
ZNF334	55713	broad.mit.edu	37	20	45132920	45132920	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:45132920C>T	uc002xsc.2	-	4	358	c.174G>A	c.(172-174)GTG>GTA	p.V58V	ZNF334_uc002xsa.2_Silent_p.V81V|ZNF334_uc002xsb.2_Silent_p.V20V|ZNF334_uc002xsd.2_Silent_p.V20V|ZNF334_uc010ghl.2_Silent_p.V57V	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	58	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				ATTTGAAAATCACATCTGGTT	0.403000													25	42					0	0	1	0	0
PTGIS	5740	broad.mit.edu	37	20	48156209	48156209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:48156209C>T	uc002xut.2	-	5	625	c.571G>A	c.(571-573)GAA>AAA	p.E191K	PTGIS_uc010zyi.1_Missense_Mutation_p.E52K	NM_000961	NP_000952	Q16647	PTGIS_HUMAN	prostaglandin I2 synthase	191					hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|prostaglandin-I synthase activity			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(12;2.37e-05)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)		Phenylbutazone(DB00812)	GCCTGGCTTTCATGGGTGCGT	0.637000													18	28					0	0	1	0	0
SLC9A8	23315	broad.mit.edu	37	20	48500526	48500526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:48500526C>T	uc002xuv.1	+	14	1624	c.1414C>T	c.(1414-1416)CGC>TGC	p.R472C	SLC9A8_uc010zym.1_Missense_Mutation_p.R172C|SLC9A8_uc010gic.2_Missense_Mutation_p.R172C|SLC9A8_uc010gid.2_Missense_Mutation_p.R96C	NM_015266	NP_056081	Q9Y2E8	SL9A8_HUMAN	sodium/hydrogen exchanger 8	472						Golgi membrane|integral to membrane	sodium:hydrogen antiporter activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;3.91e-07)			GCCCCTCATTCGCCTCATGGA	0.602000													105	115					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872077	51872077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:51872077C>T	uc002xwo.2	+	2	3036	c.2080C>T	c.(2080-2082)CCA>TCA	p.P694S		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	694					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			ATGCATCAACCCACTCAGCGC	0.627000													38	34					0	0	1	0	0
CTCFL	140690	broad.mit.edu	37	20	56073659	56073659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:56073659C>T	uc010gix.1	-	10	2601	c.1939G>A	c.(1939-1941)GAA>AAA	p.E647K	CTCFL_uc010giw.1_Missense_Mutation_p.E647K|CTCFL_uc002xym.2_Missense_Mutation_p.E647K|CTCFL_uc010giz.1_Missense_Mutation_p.E235K|CTCFL_uc010giy.1_Missense_Mutation_p.E317K|CTCFL_uc010gja.1_Missense_Mutation_p.E597K|CTCFL_uc010gjb.1_Missense_Mutation_p.E647K|CTCFL_uc010gjc.1_Missense_Mutation_p.E647K|CTCFL_uc010gjd.1_Missense_Mutation_p.E647K|CTCFL_uc010giu.2_RNA|CTCFL_uc010giv.2_Intron	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	647					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			TCATCCACTTCCTCTTTGACT	0.527000													91	127					0	0	1	0	0
CDH26	60437	broad.mit.edu	37	20	58570951	58570951	+	Missense_Mutation	SNP	T	A	A	rs36021660		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:58570951T>A	uc002ybe.2	+	12	2030	c.1730T>A	c.(1729-1731)TTC>TAC	p.F577Y	CDH26_uc002ybf.1_Missense_Mutation_p.F157Y|CDH26_uc010zzy.1_RNA|CDH26_uc002ybg.2_Missense_Mutation_p.F91Y|CDH26_uc002ybh.2_5'Flank|CDH26_uc002ybi.2_5'Flank	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	577	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			GTGCCACTCTTCATTGGAGAC	0.478000													39	53					0	0	1	0	0
C20orf197	284756	broad.mit.edu	37	20	58645091	58645091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr20:58645091G>A	uc002ybj.1	+	3	368	c.62G>A	c.(61-63)AGG>AAG	p.R21K		NM_173644	NP_775915	Q8N268	CT197_HUMAN	hypothetical protein LOC284756	21										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(7;2.33e-09)			CACAGCCACAGGCTGAAGGTG	0.547000													57	71					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10951282	10951282	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr21:10951282G>A	uc002yip.1	-	10	798	c.430C>T	c.(430-432)CGA>TGA	p.R144*	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Nonsense_Mutation_p.R126*|TPTE_uc002yir.1_Nonsense_Mutation_p.R106*|TPTE_uc010gkv.1_Nonsense_Mutation_p.R6*	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	144	Helical; (Potential).		R -> Q (in a breast cancer sample; somatic mutation).		signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ACAAATACTCGAAGAAGAACA	0.259000													30	80					0	0	1	0	0
CHODL	140578	broad.mit.edu	37	21	19629125	19629125	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr21:19629125T>C	uc002ykv.2	+	2	770	c.379T>C	c.(379-381)TCC>CCC	p.S127P	CHODL_uc002ykr.2_Missense_Mutation_p.S86P|CHODL_uc002yks.2_Missense_Mutation_p.S86P|CHODL_uc002ykt.2_Missense_Mutation_p.S86P|CHODL_uc002yku.2_Missense_Mutation_p.S86P	NM_024944	NP_079220	Q9H9P2	CHODL_HUMAN	chondrolectin precursor	127	Extracellular (Potential).|C-type lectin.				muscle organ development	integral to membrane|perinuclear region of cytoplasm	sugar binding			upper_aerodigestive_tract(1)	1		all_epithelial(11;0.21)		Epithelial(23;0.000191)|all cancers(11;0.000827)|LUSC - Lung squamous cell carcinoma(23;0.00646)|Lung(58;0.0129)|OV - Ovarian serous cystadenocarcinoma(11;0.017)|COAD - Colon adenocarcinoma(22;0.03)|Colorectal(24;0.0917)		TGGAAGCAATTCCCAGTACCG	0.502000													57	96					0	0	1	0	0
GRIK1	2897	broad.mit.edu	37	21	30961275	30961275	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr21:30961275C>T	uc002yno.1	-	11	1917	c.1453G>A	c.(1453-1455)GAA>AAA	p.E485K	GRIK1_uc002ynn.2_Missense_Mutation_p.E470K|GRIK1_uc011acs.1_Missense_Mutation_p.E485K|GRIK1_uc011act.1_Intron|GRIK1_uc010glq.1_Missense_Mutation_p.E328K	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	485	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	TTTGACAATTCTTTCAACAGG	0.393000													71	110					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32502582	32502582	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr21:32502582G>A	uc002yow.1	-	26	4466	c.3994C>T	c.(3994-3996)CGA>TGA	p.R1332*	TIAM1_uc011adk.1_Nonsense_Mutation_p.R1332*|TIAM1_uc011adl.1_Nonsense_Mutation_p.R1272*	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1332	PH 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						ATCATGTGTCGAAATCTGAAG	0.507000													129	188					0	0	1	0	0
GCFC1	94104	broad.mit.edu	37	21	34131546	34131546	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr21:34131546G>A	uc002yqn.2	-	7	1418	c.1228C>T	c.(1228-1230)CGA>TGA	p.R410*	GCFC1_uc002yqm.2_5'Flank|GCFC1_uc002yqo.2_RNA|GCFC1_uc002yqp.2_Nonsense_Mutation_p.R410*	NM_016631	NP_057715	Q9Y5B6	GCFC1_HUMAN	GC-rich sequence DNA-binding factor candidate	410						cytosol|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						TGCTGCTGTCGATTTGTTTTG	0.413000													49	71					0	0	1	0	0
CLIC6	54102	broad.mit.edu	37	21	36081023	36081023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr21:36081023C>T	uc010gmt.1	+	5	1690	c.1690C>T	c.(1690-1692)CCC>TCC	p.P564S	CLIC6_uc002yuf.1_Missense_Mutation_p.P546S	NM_053277	NP_444507	Q96NY7	CLIC6_HUMAN	chloride intracellular channel 6	564	GST C-terminal.					chloride channel complex|cytoplasm|plasma membrane	voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						GACCCAACATCCCGAATCTAA	0.403000													30	40					0	0	1	0	0
KCNJ15	3772	broad.mit.edu	37	21	39671339	39671339	+	Silent	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr21:39671339A>G	uc002ywv.2	+	4	458	c.156A>G	c.(154-156)CAA>CAG	p.Q52Q	KCNJ15_uc002yww.2_Silent_p.Q52Q|KCNJ15_uc002ywx.2_Silent_p.Q52Q	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	52	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						TCTACCTGCAAGACCTGTGGA	0.507000													13	177					0	0	1	0	0
ERG	2078	broad.mit.edu	37	21	39795450	39795450	+	Silent	SNP	G	A	A	rs146525668		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr21:39795450G>A	uc010gnw.2	-	5	586	c.291C>T	c.(289-291)GGC>GGT	p.G97G	ERG_uc002yxa.2_Silent_p.G90G|ERG_uc011aek.1_5'UTR|ERG_uc010gnv.2_5'UTR|ERG_uc010gnx.2_Silent_p.G97G|ERG_uc011ael.1_Silent_p.G97G|ERG_uc002yxb.2_Silent_p.G97G|ERG_uc011aem.1_Silent_p.G90G|ERG_uc002yxc.3_Silent_p.G97G	NM_001136155	NP_001129627	P11308	ERG_HUMAN	ets-related isoform 4	97					cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		TMPRSS2/ERG(2499)|FUS/ERG(163)|EWSR1/ERG(162)	prostate(2499)|bone(167)|haematopoietic_and_lymphoid_tissue(153)|soft_tissue(5)|lung(2)|skin(1)|ovary(1)	2828		Prostate(19;3.6e-06)				CCATCTTCCCGCCTTTGGCCA	0.517000													55	71					0	0	1	0	0
PSMG1	8624	broad.mit.edu	37	21	40551856	40551856	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr21:40551856C>T	uc002yxi.2	-	4	579	c.450G>A	c.(448-450)CTG>CTA	p.L150L	PSMG1_uc002yxj.2_Intron|PSMG1_uc010gob.2_Silent_p.L63L	NM_003720	NP_003711	O95456	PSMG1_HUMAN	Down syndrome critical region protein 2 isoform	150					proteasome assembly	endoplasmic reticulum	protein binding				0		Prostate(19;8.44e-08)				TTACCTTTTCCAGCCACTGAT	0.368000													26	46					0	0	1	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43796763	43796763	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr21:43796763C>T	uc002zbb.2	-	11	1282	c.1081G>A	c.(1081-1083)GCC>ACC	p.A361T	TMPRSS3_uc002zay.2_Missense_Mutation_p.A118T|TMPRSS3_uc002zaz.2_Missense_Mutation_p.A234T|TMPRSS3_uc002zba.2_Missense_Mutation_p.A234T|TMPRSS3_uc002zbc.2_Missense_Mutation_p.A360T	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	361	Peptidase S1.|Extracellular (Potential).				cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						AAAGGGACGGCCGCGTGGTTC	0.597000													140	231					0	0	1	0	0
PWP2	5822	broad.mit.edu	37	21	45548195	45548195	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr21:45548195C>T	uc002zeb.2	+	19	2517	c.2427C>T	c.(2425-2427)TCC>TCT	p.S809S		NM_005049	NP_005040	Q15269	PWP2_HUMAN	PWP2 periodic tryptophan protein homolog	809						cytoplasm|nucleolus	signal transducer activity			pancreas(1)	1				STAD - Stomach adenocarcinoma(101;0.172)|Colorectal(79;0.2)		TAGCTTCCTCCTTTGAAGTGT	0.493000													67	96					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45844749	45844749	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr21:45844749C>T	uc002zet.1	+	25	3777	c.3564C>T	c.(3562-3564)GCC>GCT	p.A1188A	TRPM2_uc002zeu.1_Silent_p.A1188A|TRPM2_uc002zew.1_Silent_p.A1188A|TRPM2_uc010gpt.1_Silent_p.A1238A|TRPM2_uc002zex.1_Silent_p.A974A|TRPM2_uc002zey.1_Silent_p.A701A|uc011afe.1_Intron|TRPM2_uc011aff.1_5'Flank	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1188	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCCAGACAGCCCAAGCCCTGC	0.677000													7	17					0	0	1	0	0
PCNT	5116	broad.mit.edu	37	21	47776895	47776895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr21:47776895C>T	uc002zji.3	+	13	2050	c.1943C>T	c.(1942-1944)CCC>CTC	p.P648L	PCNT_uc002zjj.2_Missense_Mutation_p.P530L	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	648	Glu-rich.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					ACAGAGCTTCCCTGGGTGCAT	0.607000													67	82					0	0	1	0	0
Unknown	0	broad.mit.edu	37	22	18844888	18844888	+	RNA	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr22:18844888A>G	uc002zoe.2	+	4		c.2142A>G			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		GCTCACGGAAATACAGCTTCA	0.587000													4	53					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22453527	22453527	+	RNA	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr22:22453527C>T	uc011aim.1	+	7		c.660C>T								Parts of antibodies, mostly variable regions.												0						TCTCTGGCTCCATCCTTGGGA	0.562000													169	21					0	0	1	0	0
VPREB1	7441	broad.mit.edu	37	22	22599238	22599238	+	Missense_Mutation	SNP	C	T	T	rs146019843	byFrequency	TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr22:22599238C>T	uc002zvx.1	+	1	39	c.13C>T	c.(13-15)CCT>TCT	p.P5S	LOC96610_uc011aim.1_Intron	NM_007128	NP_009059	P12018	VPREB_HUMAN	immunoglobulin iota chain precursor	5					immune response	extracellular region	antigen binding|protein binding				0	all_hematologic(9;0.0312)|Acute lymphoblastic leukemia(84;0.155)	all_cancers(3;3.14e-14)|Acute lymphoblastic leukemia(3;2.97e-57)|all_hematologic(3;5.9e-52)		READ - Rectum adenocarcinoma(21;0.145)		GTCCTGGGCTCCTGTCCTGCT	0.632000													90	15					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22758930	22758930	+	RNA	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr22:22758930G>A	uc011aim.1	+	53		c.5996G>A								Parts of antibodies, mostly variable regions.												0						CGACCCTCAGGGATTCCTGAC	0.547000													155	28					0	0	1	0	0
BCR	613	broad.mit.edu	37	22	23654022	23654022	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr22:23654022C>T	uc002zww.2	+	19	3917	c.3321C>T	c.(3319-3321)GTC>GTT	p.V1107V	BCR_uc002zwx.2_Silent_p.V1063V|BCR_uc011aiy.1_Silent_p.V696V	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	1107	Rho-GAP.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						CCTTCGACGTCAGTGAGTGTT	0.627000			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								131	14					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26164502	26164502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr22:26164502G>A	uc003abz.1	+	4	869	c.619G>A	c.(619-621)GAG>AAG	p.E207K	MYO18B_uc003aca.1_Missense_Mutation_p.E88K|MYO18B_uc010guy.1_Missense_Mutation_p.E88K|MYO18B_uc010guz.1_Missense_Mutation_p.E88K|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	207						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GGCCAGCACCGAGATCTTGGC	0.597000													27	0					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26422418	26422418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr22:26422418G>A	uc003abz.1	+	43	6728	c.6478G>A	c.(6478-6480)GAA>AAA	p.E2160K	MYO18B_uc003aca.1_Missense_Mutation_p.E2041K|MYO18B_uc010guy.1_Missense_Mutation_p.E2042K|MYO18B_uc010guz.1_Missense_Mutation_p.E2040K|MYO18B_uc011aka.1_Missense_Mutation_p.E1314K|MYO18B_uc011akb.1_Missense_Mutation_p.E1673K|MYO18B_uc010gva.1_Missense_Mutation_p.E143K|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2160						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CAGGATAAACGAAGAGGCTGG	0.502000													261	33					0	0	1	0	0
RFPL1	5988	broad.mit.edu	37	22	29837973	29837973	+	Silent	SNP	T	C	C	rs61731583		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr22:29837973T>C	uc003afn.2	+	2	1025	c.816T>C	c.(814-816)AGT>AGC	p.S272S	RFPL1S_uc003afm.1_RNA	NM_021026	NP_066306	O75677	RFPL1_HUMAN	ret finger protein-like 1	272	B30.2/SPRY.						zinc ion binding				0						CATTCAGGAGTGTCTCTGCTG	0.473000													5	98					0	0	1	0	0
MYH9	4627	broad.mit.edu	37	22	36722679	36722679	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr22:36722679C>T	uc003apg.2	-	5	777	c.546G>A	c.(544-546)GAG>GAA	p.E182E	MYH9_uc003aph.1_Silent_p.E46E|MYH9_uc003api.1_Silent_p.E182E	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	182	Myosin head-like.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						TCTTGGTGTTCTCCGTCTTGC	0.587000			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				164	29					0	0	1	0	0
PLA2G6	8398	broad.mit.edu	37	22	38536042	38536042	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr22:38536042G>A	uc003auy.1	-	5	880	c.744C>T	c.(742-744)ATC>ATT	p.I248I	PLA2G6_uc003auz.1_Silent_p.I248I|PLA2G6_uc003ava.1_Silent_p.I248I|PLA2G6_uc003avb.2_Silent_p.I248I|PLA2G6_uc010gxk.1_RNA|PLA2G6_uc011ano.1_Intron	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	248	ANK 3.				cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	TGGGGCCCATGATGTTGCACC	0.627000													31	11					0	0	1	0	0
CBX6	23466	broad.mit.edu	37	22	39262668	39262668	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr22:39262668G>A	uc003awl.2	-	5	848	c.785C>T	c.(784-786)GCC>GTC	p.A262V		NM_014292	NP_055107	O95503	CBX6_HUMAN	chromobox homolog 6	262					chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	PcG protein complex					0	Melanoma(58;0.04)					GGCGGGGGCGGCCAGAAGTAG	0.741000													31	3					0	0	1	0	0
SAPS2	9701	broad.mit.edu	37	22	50854526	50854526	+	Silent	SNP	G	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr22:50854526G>C	uc003blb.1	+	7	980	c.558G>C	c.(556-558)CTG>CTC	p.L186L	SAPS2_uc003bky.1_Silent_p.L186L|SAPS2_uc003bkz.1_Silent_p.L186L|SAPS2_uc003blc.2_Silent_p.L186L|SAPS2_uc003bla.1_Silent_p.L186L	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	186						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		TTCAGTGGCTGAATGAAGAGA	0.507000													3	88					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	407684	407684	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:407684A>C	uc003bou.2	+	14	1860	c.1589A>C	c.(1588-1590)CAT>CCT	p.H530P	CHL1_uc003bot.2_Missense_Mutation_p.H546P|CHL1_uc003bow.1_Missense_Mutation_p.H530P|CHL1_uc011asi.1_Missense_Mutation_p.H546P|uc003box.1_Intron	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	530	Ig-like C2-type 6.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		CCCAAATTGCATATGCTTGAA	0.348000													34	9					0	0	1	0	0
LHFPL4	375323	broad.mit.edu	37	3	9594070	9594070	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:9594070G>A	uc003bry.2	-	2	580	c.294C>T	c.(292-294)TTC>TTT	p.F98F		NM_198560	NP_940962	Q7Z7J7	LHPL4_HUMAN	lipoma HMGIC fusion partner-like 4	98	Helical; (Potential).					integral to membrane				ovary(2)|skin(1)	3	Medulloblastoma(99;0.227)					AGAGCAGCACGAAGAAGGCGG	0.637000													33	5					0	0	1	0	0
FBLN2	2199	broad.mit.edu	37	3	13679062	13679062	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:13679062G>A	uc011avb.1	+	17	3323	c.3198G>A	c.(3196-3198)ACG>ACA	p.T1066T	FBLN2_uc011auz.1_Silent_p.T1092T|FBLN2_uc011ava.1_Silent_p.T1113T|FBLN2_uc011avc.1_Silent_p.T1113T	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	1066	EGF-like 10; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			CTCCCTGCAGGAAGTGCGAGC	0.612000													23	12					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38592310	38592310	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:38592310C>T	uc003cio.2	-	28	5747	c.5553G>A	c.(5551-5553)ATG>ATA	p.M1851I	SCN5A_uc003cin.2_Missense_Mutation_p.M1850I|SCN5A_uc003cil.3_Missense_Mutation_p.M1851I|SCN5A_uc010hhi.2_Missense_Mutation_p.M1833I|SCN5A_uc010hhk.2_Missense_Mutation_p.M1818I|SCN5A_uc011ayr.1_Missense_Mutation_p.M1797I	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1851					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	AGAGAATGTCCATGCAATGGA	0.567000													70	17					0	0	1	0	0
LIMD1	8994	broad.mit.edu	37	3	45714242	45714242	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:45714242G>A	uc003coq.2	+	5	1751	c.1702G>A	c.(1702-1704)GAG>AAG	p.E568K		NM_014240	NP_055055	Q9UGP4	LIMD1_HUMAN	LIM domains containing 1	568	LIM zinc-binding 2.|Necessary for nuclear localization.				cytoplasmic mRNA processing body assembly|gene silencing by miRNA|multicellular organismal development|negative regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasmic mRNA processing body|nucleus|RNA-induced silencing complex	protein binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.011)|KIRC - Kidney renal clear cell carcinoma(197;0.0264)|Kidney(197;0.0315)		CATCTGTAATGAGTGTTTGGA	0.537000													69	20					0	0	1	0	0
CCRL2	9034	broad.mit.edu	37	3	46449977	46449977	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:46449977G>A	uc003cpp.3	+	2	692	c.407G>A	c.(406-408)GGA>GAA	p.G136E	CCRL2_uc010hjg.2_Missense_Mutation_p.G148E|CCRL2_uc010hjf.2_Missense_Mutation_p.G136E	NM_003965	NP_003956	O00421	CCRL2_HUMAN	chemokine (C-C motif) receptor-like 2 isoform 1	136	Cytoplasmic (Potential).				chemotaxis|inflammatory response	integral to plasma membrane	CCR chemokine receptor binding|chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)		TTGCACAAGGGAAACTTTTTC	0.468000													81	23					0	0	1	0	0
DAG1	1605	broad.mit.edu	37	3	49569010	49569010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:49569010C>T	uc003cxc.3	+	3	1484	c.1066C>T	c.(1066-1068)CCT>TCT	p.P356S		NM_004393	NP_004384	Q14118	DAG1_HUMAN	dystroglycan 1 preproprotein	356	Thr-rich.|Required for laminin recognition.|Mucin-like domain.				cytoskeletal anchoring at plasma membrane|interspecies interaction between organisms|microtubule anchoring|negative regulation of cell migration|negative regulation of MAPKKK cascade|negative regulation of protein kinase B signaling cascade	basement membrane|contractile ring|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|extracellular space|filopodium|integral to membrane|integral to membrane of membrane fraction|lamellipodium|nucleoplasm	actin binding|alpha-actinin binding|calcium ion binding|laminin-1 binding|receptor activity|structural constituent of muscle|tubulin binding|vinculin binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;5.13e-05)|Kidney(197;0.00241)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		GACCATGGCTCCTCCAGTCAG	0.612000													98	18					0	0	1	0	0
GRM2	2912	broad.mit.edu	37	3	51743392	51743392	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:51743392T>G	uc010hlv.2	+	2	632	c.393T>G	c.(391-393)GAT>GAG	p.D131E	GRM2_uc003dbo.3_Intron|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	131	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	CCCATGGTGATGCTCCCACTG	0.612000													11	5					0	0	1	0	0
NISCH	11188	broad.mit.edu	37	3	52521917	52521917	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:52521917C>T	uc011beg.1	+	17	2481	c.2409C>T	c.(2407-2409)TTC>TTT	p.F803F	NISCH_uc003ded.3_Silent_p.F803F|NISCH_uc003dee.3_Silent_p.F292F|NISCH_uc003deg.1_RNA	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	803	Interaction with LIMK (By similarity).|Interaction with ITGA5 (By similarity).|Interaction with PAK1 (By similarity).				apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		TGCACGAGTTCCACGCGGACC	0.607000													35	6					0	0	1	0	0
PBRM1	55193	broad.mit.edu	37	3	52643768	52643768	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:52643768G>A	uc003des.2	-	16	2140	c.2128C>T	c.(2128-2130)CGA>TGA	p.R710*	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Nonsense_Mutation_p.R710*|PBRM1_uc003der.2_Nonsense_Mutation_p.R678*|PBRM1_uc003det.2_Nonsense_Mutation_p.R725*|PBRM1_uc003deu.2_Nonsense_Mutation_p.R725*|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Nonsense_Mutation_p.R710*|PBRM1_uc010hmk.1_Nonsense_Mutation_p.R710*|PBRM1_uc003dey.2_Nonsense_Mutation_p.R710*|PBRM1_uc003dez.1_Nonsense_Mutation_p.R710*|PBRM1_uc003dfb.1_Nonsense_Mutation_p.R623*|PBRM1_uc003dfa.1_Nonsense_Mutation_p.R56*|PBRM1_uc003dfc.2_Nonsense_Mutation_p.R77*	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	710	Bromo 5.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding	p.R710fs*13(1)		kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		ATGTGACTTCGAATTTTTTCC	0.438000			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								58	22					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54537566	54537566	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:54537566G>A	uc003dhf.2	+	5	477	c.429G>A	c.(427-429)GGG>GGA	p.G143G	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.G49G|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	143	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity	p.G143G(1)		large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		ACAAAGACGGGAATTTTTTGG	0.398000													64	24					0	0	1	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54905569	54905569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:54905569G>A	uc003dhf.2	+	18	1678	c.1630G>A	c.(1630-1632)GAA>AAA	p.E544K	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.E450K|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.E278K	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	544	Extracellular (Potential).|Cache.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TTGCTAGTACGAAGAAGGAAA	0.443000													29	12					0	0	1	0	0
CADPS	8618	broad.mit.edu	37	3	62751604	62751604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:62751604C>T	uc003dll.2	-	2	857	c.497G>A	c.(496-498)GGG>GAG	p.G166E	CADPS_uc003dlm.2_Missense_Mutation_p.G166E|CADPS_uc003dln.2_Missense_Mutation_p.G166E	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	166					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		CTGGGTTTCCCCATTGAGGAA	0.473000													75	24					0	0	1	0	0
SYNPR	132204	broad.mit.edu	37	3	63542372	63542372	+	Silent	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:63542372T>A	uc003dlq.2	+	3	672	c.303T>A	c.(301-303)ATT>ATA	p.I101I	SYNPR_uc003dlp.2_Silent_p.I121I|SYNPR_uc011bfk.1_RNA|SYNPR_uc011bfl.1_Intron|SYNPR_uc010hnt.2_Silent_p.I110I|SYNPR_uc011bfm.1_Intron	NM_144642	NP_653243	Q8TBG9	SYNPR_HUMAN	synaptoporin isoform 2	101	MARVEL.|Helical; (Potential).					cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	transporter activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000918)|KIRC - Kidney renal clear cell carcinoma(15;0.0658)|Kidney(15;0.0904)		TCGTTTACATTTTCTTCCAGA	0.428000													15	6					0	0	1	0	0
LRIG1	26018	broad.mit.edu	37	3	66431077	66431078	+	Missense_Mutation	DNP	CC	TT	TT	rs2279289	byFrequency	TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:66431077_66431078CC>TT	uc003dmx.2	-	18	2992_2993	c.2978_2979GG>AA	c.(2977-2979)GGG>GAA	p.G993E	SLC25A26_uc011bft.1_RNA|LRIG1_uc011bfu.1_Missense_Mutation_p.G613E|LRIG1_uc003dmw.2_Missense_Mutation_p.G659E|LRIG1_uc010hnz.2_Missense_Mutation_p.G709E|LRIG1_uc010hoa.2_Missense_Mutation_p.G970E	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	993	Cytoplasmic (Potential).					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		GGTAGAGCGACCCTTGGCACTC	0.554000													101	156					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77666801	77666801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:77666801C>T	uc003dpy.3	+	22	4074	c.3431C>T	c.(3430-3432)TCC>TTC	p.S1144F	ROBO2_uc003dpz.2_Missense_Mutation_p.S1148F|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.S1148F|ROBO2_uc003dqa.2_Missense_Mutation_p.S271F	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1144	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		CCTGCTATCTCCTTTGGACAG	0.512000													57	84					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77684109	77684109	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:77684109G>A	uc003dpy.3	+	24	4492	c.3849G>A	c.(3847-3849)CAG>CAA	p.Q1283Q	ROBO2_uc003dpz.2_Silent_p.Q1348Q|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Silent_p.Q1287Q	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1283	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		GTCAAAGTCAGAGGCCTCGGC	0.493000													75	81					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	97329700	97329700	+	Splice_Site	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:97329700T>G	uc010how.1	+	13	2617	c.2574_splice	c.e13+2	p.R858_splice	EPHA6_uc011bgp.1_Splice_Site_p.R224_splice|EPHA6_uc003drs.3_Splice_Site_p.R250_splice|EPHA6_uc003drr.3_Splice_Site_p.R250_splice|EPHA6_uc003drt.2_Splice_Site_p.R250_splice|EPHA6_uc010hox.1_Splice_Site	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a							integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TTTTTGCGGGTGAGGTGTTCT	0.338000													28	42					0	0	1	0	0
GABRR3	200959	broad.mit.edu	37	3	97711708	97711708	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:97711708C>T	uc011bgr.1	-	8	1092	c.1092G>A	c.(1090-1092)AAG>AAA	p.K364K		NM_001105580	NP_001099050	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 3	364	Cytoplasmic (Potential).|Interaction with SQSTM1 (By similarity).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0						TTCCTGTCTTCTTGAATTGTT	0.473000													115	207					0	0	1	0	0
COL8A1	1295	broad.mit.edu	37	3	99513943	99513943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:99513943C>T	uc003dtg.1	+	5	1443	c.1198C>T	c.(1198-1200)CCT>TCT	p.P400S	COL8A1_uc003dth.1_Missense_Mutation_p.P400S|COL8A1_uc003dti.1_Missense_Mutation_p.P401S	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	400	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						AATCCCAGGTCCTATGGGCCC	0.612000													18	16					0	0	1	0	0
GPR128	84873	broad.mit.edu	37	3	100352147	100352147	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:100352147C>T	uc003duc.2	+	4	641	c.373C>T	c.(373-375)CTA>TTA	p.L125L	GPR128_uc011bhc.1_5'Flank	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	125	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						CAGTCTCTCTCTATATGGAGA	0.318000													51	47					0	0	1	0	0
CEP97	79598	broad.mit.edu	37	3	101476917	101476917	+	Silent	SNP	A	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:101476917A>T	uc003dvk.1	+	9	1494	c.1467A>T	c.(1465-1467)ATA>ATT	p.I489I	CEP97_uc010hpm.1_Silent_p.I455I|CEP97_uc011bhf.1_Silent_p.I430I|CEP97_uc003dvl.1_Silent_p.I185I|CEP97_uc003dvm.1_Silent_p.I327I	NM_024548	NP_078824	Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	489	CEP110 binding.					centrosome|nucleus	protein binding			ovary(2)	2						AGCCAACAATAATCAGTGCTA	0.368000													59	98					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108110643	108110643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:108110643C>T	uc003dxa.1	-	38	5511	c.5454G>A	c.(5452-5454)ATG>ATA	p.M1818I		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1818	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TTCTACTCCCCATCAGGGCCA	0.463000													95	173					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108112888	108112888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:108112888G>A	uc003dxa.1	-	37	5366	c.5309C>T	c.(5308-5310)GCA>GTA	p.A1770V		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1770	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CTCAATGGCTGCCTTCTTGGC	0.547000													58	99					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108188969	108188969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:108188969C>T	uc003dxa.1	-	15	1591	c.1534G>A	c.(1534-1536)GAA>AAA	p.E512K		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	512	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TTCTTATATTCCTCTTGCTCC	0.338000													33	48					0	0	1	0	0
SIDT1	54847	broad.mit.edu	37	3	113286421	113286421	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:113286421C>T	uc003eak.2	+	3	1030	c.379C>T	c.(379-381)CGC>TGC	p.R127C	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Missense_Mutation_p.R127C|SIDT1_uc011big.1_5'UTR	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	127	Extracellular (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						AGAAGTGAGCCGCACCTTATG	0.478000													66	111					0	0	1	0	0
SIDT1	54847	broad.mit.edu	37	3	113346507	113346507	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:113346507G>A	uc003eak.2	+	25	3087	c.2436G>A	c.(2434-2436)TTG>TTA	p.L812L	SIDT1_uc011big.1_Silent_p.L565L|SIDT1_uc011bii.1_Silent_p.L265L	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	812	Helical; (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						TGTTAACTTTGGATGATGACC	0.463000													59	102					0	0	1	0	0
C3orf15	89876	broad.mit.edu	37	3	119463002	119463002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:119463002G>A	uc003ede.3	+	14	1938	c.1861G>A	c.(1861-1863)GAA>AAA	p.E621K	C3orf15_uc010hqz.2_Missense_Mutation_p.E559K|C3orf15_uc011bjd.1_Missense_Mutation_p.E495K|C3orf15_uc011bje.1_Missense_Mutation_p.E601K	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	457						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		GCGCCAGGTGGAAAAACAGCG	0.592000													24	40					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	120673835	120673835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:120673835C>T	uc003eec.3	+	3	378	c.238C>T	c.(238-240)CCA>TCA	p.P80S	STXBP5L_uc011bji.1_Missense_Mutation_p.P80S	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	80	WD 1.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AGCCTTTGATCCAGTTCAGAA	0.343000													47	69					0	0	1	0	0
FBXO40	51725	broad.mit.edu	37	3	121341214	121341214	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:121341214A>C	uc003eeg.2	+	3	1148	c.938A>C	c.(937-939)CAC>CCC	p.H313P		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	313					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		TATCTAGTGCACAATGGGCGG	0.488000													52	110					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	121980842	121980842	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:121980842C>T	uc003eev.3	+	4	1332	c.960C>T	c.(958-960)TTC>TTT	p.F320F	CASR_uc003eew.3_Silent_p.F320F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	320	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCATTGGATTCGCTCTGAAGG	0.577000													39	56					0	0	1	0	0
PARP14	54625	broad.mit.edu	37	3	122418363	122418363	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:122418363C>T	uc003efq.3	+	6	1021	c.962C>T	c.(961-963)CCA>CTA	p.P321L	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Missense_Mutation_p.P38L|PARP14_uc003efs.1_Missense_Mutation_p.P38L	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	321					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		CTTCCAGCACCATTTGAAGAG	0.433000													37	59					0	0	1	0	0
UROC1	131669	broad.mit.edu	37	3	126207067	126207067	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:126207067G>A	uc003eiz.1	-	18	1796	c.1764C>T	c.(1762-1764)GCC>GCT	p.A588A	UROC1_uc010hsi.1_Silent_p.A648A	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	588					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		CGTTGTGAAGGGCGACCCAGG	0.612000													117	202					0	0	1	0	0
PLXNA1	5361	broad.mit.edu	37	3	126736492	126736492	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:126736492C>T	uc003ejg.2	+	17	3436	c.3432C>T	c.(3430-3432)TCC>TCT	p.S1144S		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1167	Extracellular (Potential).|IPT/TIG 4.				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		AGCCCAGCTCCCCACTCATCC	0.642000													200	246					0	0	1	0	0
KIAA1257	57501	broad.mit.edu	37	3	128706573	128706573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:128706573G>A	uc003elj.3	-	4	749	c.553C>T	c.(553-555)CAC>TAC	p.H185Y	KIAA1257_uc003elg.1_Missense_Mutation_p.H185Y|KIAA1257_uc003eli.3_Missense_Mutation_p.H73Y	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	185											0						GTGATTTTGTGGAAATTTATT	0.438000													24	35					0	0	1	0	0
H1FOO	132243	broad.mit.edu	37	3	129267943	129267943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:129267943C>T	uc003emu.2	+	3	483	c.478C>T	c.(478-480)CCA>TCA	p.P160S	H1FOO_uc003emv.2_Missense_Mutation_p.P21S	NM_153833	NP_722575	Q8IZA3	H1FOO_HUMAN	H1 histone family, member O, oocyte-specific	160					meiosis|nucleosome assembly	cytoplasm|nucleosome	DNA binding			skin(1)	1						CCCCAAGAAACCAAGTGAGGC	0.617000													5	11					0	0	1	0	0
ACAD11	84129	broad.mit.edu	37	3	132349375	132349375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:132349375G>A	uc003eov.3	-	7	1249	c.869C>T	c.(868-870)TCA>TTA	p.S290L	ACAD11_uc003eoy.2_Missense_Mutation_p.S290L	NM_032169	NP_115545	Q709F0	ACD11_HUMAN	putative acyl-CoA dehydrogenase	290						peroxisome	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|transferase activity, transferring phosphorus-containing groups			ovary(1)	1						GCAATATATTGAAATCAGTTC	0.323000													31	40					0	0	1	0	0
GRK7	131890	broad.mit.edu	37	3	141526604	141526604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:141526604C>T	uc011bnd.1	+	3	1252	c.1168C>T	c.(1168-1170)CCA>TCA	p.P390S		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	390	Protein kinase.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						TGGACGAACACCATTCAAAGA	0.433000													42	48					0	0	1	0	0
GPR149	344758	broad.mit.edu	37	3	154146664	154146664	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:154146664T>G	uc003faa.2	-	1	841	c.741A>C	c.(739-741)AGA>AGC	p.R247S		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	247	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			GGGAAACCACTCTCCCCGCAG	0.642000													31	39					0	0	1	0	0
VEPH1	79674	broad.mit.edu	37	3	157031522	157031522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:157031522G>A	uc003fbj.1	-	11	2215	c.1898C>T	c.(1897-1899)TCC>TTC	p.S633F	VEPH1_uc003fbk.1_Missense_Mutation_p.S633F|VEPH1_uc010hvu.1_Intron	NM_024621	NP_078897	Q14D04	MELT_HUMAN	ventricular zone expressed PH domain homolog 1	633						plasma membrane				breast(3)|ovary(1)|lung(1)	5			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			ACTCTGAATGGACAGGGGTTC	0.458000													53	87					0	0	1	0	0
SERPINI2	5276	broad.mit.edu	37	3	167167187	167167187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:167167187G>A	uc003fer.1	-	6	1026	c.968C>T	c.(967-969)TCA>TTA	p.S323L	SERPINI2_uc003fes.1_Missense_Mutation_p.S333L|SERPINI2_uc003fet.1_Missense_Mutation_p.S323L	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	323					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						CACTTCAGATGAATCTGGTTA	0.294000													18	24					0	0	1	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169540187	169540187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:169540187G>A	uc003fgb.2	+	1	478	c.478G>A	c.(478-480)GAA>AAA	p.E160K		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	160	LRR 6.										0						TCTGCCCAAGGAAATAGTGAA	0.502000													56	66					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169656114	169656114	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:169656114G>A	uc003fgd.2	+	9	1428	c.1161G>A	c.(1159-1161)CAG>CAA	p.Q387Q	SAMD7_uc003fge.2_Silent_p.Q387Q|SAMD7_uc011bpo.1_Silent_p.Q288Q	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	387	SAM.									skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			AGGTATCTCAGCATGTGGGAA	0.338000													46	79					0	0	1	0	0
TNFSF10	8743	broad.mit.edu	37	3	172232732	172232732	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:172232732A>C	uc003fid.2	-	2	284	c.189T>G	c.(187-189)AGT>AGG	p.S63R	TNFSF10_uc003fie.2_Missense_Mutation_p.S63R	NM_003810	NP_003801	P50591	TNF10_HUMAN	tumor necrosis factor (ligand) superfamily,	63	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of apoptosis by extracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane|soluble fraction	cytokine activity|metal ion binding|tumor necrosis factor receptor binding			skin(4)|lung(1)	5	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.67e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			GGTCCCAATAACTGTCATCTT	0.443000													91	121					0	0	1	0	0
NCEH1	57552	broad.mit.edu	37	3	172353768	172353768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:172353768C>T	uc011bpx.1	-	4	805	c.667G>A	c.(667-669)GGC>AGC	p.G223S	NCEH1_uc003fig.2_Missense_Mutation_p.G215S|NCEH1_uc011bpw.1_Missense_Mutation_p.G50S|NCEH1_uc011bpy.1_Missense_Mutation_p.G50S	NM_001146276	NP_001139748	Q6PIU2	NCEH1_HUMAN	arylacetamide deacetylase-like 1 isoform a	183	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum|integral to membrane|microsome	carboxylesterase activity				0						CAAATTCTGCCTGGATCAACC	0.463000													109	141					0	0	1	0	0
SPATA16	83893	broad.mit.edu	37	3	172835398	172835398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:172835398C>T	uc003fin.3	-	2	282	c.124G>A	c.(124-126)GAA>AAA	p.E42K		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	42					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			TGTGACATTTCCAGGATGTTA	0.378000													135	228					0	0	1	0	0
FAM131A	131408	broad.mit.edu	37	3	184059834	184059834	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:184059834C>T	uc003fog.2	+	1	1577	c.213C>T	c.(211-213)CTC>CTT	p.L71L	FAM131A_uc003fob.1_Intron|FAM131A_uc003foc.2_Intron|FAM131A_uc003foe.2_Intron	NM_144635	NP_653236	Q6UXB0	F131A_HUMAN	hypothetical protein LOC131408 precursor	71						extracellular region				breast(1)	1	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CCAGGCTTCTCCACCCTCCCC	0.602000													141	227					0	0	1	0	0
THPO	7066	broad.mit.edu	37	3	184090587	184090588	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:184090587_184090588CC>TT	uc003fol.1	-	6	990_991	c.775_776GG>AA	c.(775-777)GGA>AAA	p.G259K	THPO_uc003fom.1_Missense_Mutation_p.G255K|THPO_uc003fon.2_Nonsense_Mutation_p.W220*|THPO_uc011bro.1_Intron|THPO_uc003fop.2_Nonsense_Mutation_p.W216*|THPO_uc011brp.1_Intron|THPO_uc011brq.1_Nonsense_Mutation_p.W180*	NM_000460	NP_000451	P40225	TPO_HUMAN	thrombopoietin precursor	259					cell proliferation|platelet activation	extracellular space	cytokine activity|growth factor activity|hormone activity			ovary(1)	1	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AGGAAAGAGTCCACGAGTTCCA	0.559000													82	132					0	0	1	0	0
EPHB3	2049	broad.mit.edu	37	3	184299160	184299160	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:184299160T>G	uc003foz.2	+	15	3289	c.2852T>G	c.(2851-2853)TTT>TGT	p.F951C		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	951	Cytoplasmic (Potential).|SAM.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			AGTGCGGGGTTTGCATCTTTT	0.587000													59	67					0	0	1	0	0
C3orf59	151963	broad.mit.edu	37	3	192516621	192516621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:192516621G>A	uc011bsp.1	-	2	1351	c.1030C>T	c.(1030-1032)CCT>TCT	p.P344S		NM_178496	NP_848591	Q8IYB1	M21D2_HUMAN	hypothetical protein LOC151963	344											0	all_cancers(143;1.56e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.8e-18)|LUSC - Lung squamous cell carcinoma(58;8.04e-06)|Lung(62;8.62e-06)	GBM - Glioblastoma multiforme(46;3.86e-05)		TAGTTGGCAGGAAGTCTGTCG	0.532000													42	46					0	0	1	0	0
ATP13A5	344905	broad.mit.edu	37	3	193028435	193028435	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:193028435C>T	uc011bsq.1	-	21	2517	c.2517G>A	c.(2515-2517)CAG>CAA	p.Q839Q		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	839					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		ACTTTAATTTCTGAAATTCTT	0.328000													51	54					0	0	1	0	0
IQCG	84223	broad.mit.edu	37	3	197639610	197639610	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:197639610A>G	uc003fyo.2	-	8	1045	c.899T>C	c.(898-900)ATG>ACG	p.M300T	IQCG_uc003fyn.2_Missense_Mutation_p.M202T|IQCG_uc003fyp.2_Missense_Mutation_p.M300T|IQCG_uc003fym.2_Missense_Mutation_p.M1T	NM_001134435	NP_001127907	Q9H095	IQCG_HUMAN	IQ motif containing G	300											0	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;7.19e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.149)		TTCGGTTTTCATCCTGAGTTT	0.483000													126	177					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3208638	3208638	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:3208638C>T	uc011bvq.1	+	45	6154	c.6009C>T	c.(6007-6009)TTC>TTT	p.F2003F		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2001					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GCACCCCTTTCCGTGTGCTGG	0.527000													39	64					0	0	1	0	0
EVC2	132884	broad.mit.edu	37	4	5630351	5630351	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:5630351G>A	uc003gij.2	-	12	1875	c.1821C>T	c.(1819-1821)ACC>ACT	p.T607T	EVC2_uc011bwb.1_Silent_p.T47T|EVC2_uc003gik.2_Silent_p.T527T	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	607						integral to membrane				large_intestine(3)|ovary(2)	5						CCTGCACACGGGTCTCTGATG	0.498000													55	84					0	0	1	0	0
AFAP1	60312	broad.mit.edu	37	4	7774673	7774673	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:7774673C>T	uc003gkg.1	-	15	2148	c.1875G>A	c.(1873-1875)AAG>AAA	p.K625K	AFAP1_uc011bwk.1_Silent_p.K709K|LOC84740_uc003gkd.3_RNA	NM_198595	NP_940997	Q8N556	AFAP1_HUMAN	actin filament associated protein 1	625	Interaction with F-actin (By similarity).|Potential.					actin cytoskeleton|cytoplasm|focal adhesion	actin binding				0						GCTCCGCCTCCTTCTGCCGGC	0.657000													23	43					0	0	1	0	0
ZNF518B	85460	broad.mit.edu	37	4	10447782	10447782	+	Silent	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:10447782A>G	uc003gmn.2	-	3	658	c.171T>C	c.(169-171)ATT>ATC	p.I57I		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	57					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						CACATGTAGCAATGGTCATCA	0.483000													123	173					0	0	1	0	0
BOD1L	259282	broad.mit.edu	37	4	13604735	13604735	+	Silent	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:13604735T>C	uc003gmz.1	-	10	3906	c.3789A>G	c.(3787-3789)GAA>GAG	p.E1263E	BOD1L_uc010idr.1_Silent_p.E600E	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1263							DNA binding			ovary(5)|breast(1)	6						GAGCAACATGTTCTTCAGCAG	0.403000													13	25					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36069774	36069774	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:36069774G>A	uc003gsq.1	-	33	5208	c.4870C>T	c.(4870-4872)CGA>TGA	p.R1624*	ARAP2_uc003gso.2_Intron	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1624					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						GGTCGATTTCGAAGTTTATCG	0.512000													58	81					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36230727	36230727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:36230727C>T	uc003gsq.1	-	2	720	c.382G>A	c.(382-384)GAA>AAA	p.E128K	ARAP2_uc003gsr.1_Missense_Mutation_p.E128K	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	128					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TCACTGTCTTCAAGATTTTTT	0.448000													53	71					0	0	1	0	0
GABRG1	2565	broad.mit.edu	37	4	46060276	46060276	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:46060276A>T	uc003gxb.2	-	7	1026	c.874T>A	c.(874-876)TTT>ATT	p.F292I		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	292	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		TTGATCCAAAAAGACACCCAA	0.343000													58	73					0	0	1	0	0
CORIN	10699	broad.mit.edu	37	4	47667088	47667088	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:47667088T>G	uc003gxm.2	-	11	1643	c.1550A>C	c.(1549-1551)AAA>ACA	p.K517T	CORIN_uc011bzf.1_Missense_Mutation_p.K378T|CORIN_uc011bzg.1_Missense_Mutation_p.K450T|CORIN_uc011bzh.1_Missense_Mutation_p.K480T|CORIN_uc011bzi.1_Missense_Mutation_p.K480T	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	517	Extracellular (Potential).|FZ 2.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						CACATCACATTTTGGTACCAA	0.443000													53	75					0	0	1	0	0
SPATA18	132671	broad.mit.edu	37	4	52928427	52928427	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:52928427G>A	uc003gzl.2	+	4	629	c.351G>A	c.(349-351)CGG>CGA	p.R117R	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Silent_p.R117R|SPATA18_uc003gzk.1_Silent_p.R117R	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	117					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			CCAGTCCTCGGGATCGGGATA	0.318000													70	119					0	0	1	0	0
KIAA1211	57482	broad.mit.edu	37	4	57182009	57182009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:57182009G>A	uc003hbk.2	+	8	2732	c.2341G>A	c.(2341-2343)GAG>AAG	p.E781K	KIAA1211_uc010iha.2_Missense_Mutation_p.E774K|KIAA1211_uc011bzz.1_Missense_Mutation_p.E691K|KIAA1211_uc003hbm.1_Missense_Mutation_p.E667K	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	781										ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					GATGCACCGGGAGCCCGCAGA	0.622000													53	71					0	0	1	0	0
UGT2B15	7366	broad.mit.edu	37	4	69519873	69519873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:69519873C>T	uc011cal.1	-	5	1233	c.1195G>A	c.(1195-1197)GAT>AAT	p.D399N		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	399					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						TCATGTTGATCCGCAAACAAG	0.463000													57	272					0	0	1	0	0
UGT2A3	79799	broad.mit.edu	37	4	69796437	69796437	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:69796437C>T	uc003hef.2	-	5	1162	c.1131G>A	c.(1129-1131)GGG>GGA	p.G377G	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	377	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						CTTCATAGATCCCATTCATTC	0.393000													35	35					0	0	1	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146416	70146416	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:70146416C>T	uc003hej.2	+	1	200	c.198C>T	c.(196-198)CCC>CCT	p.P66P	UGT2B28_uc010ihr.2_Silent_p.P66P	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	66					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	TTTTTGATCCCAATGACGCAT	0.388000													99	121					0	0	1	0	0
USO1	8615	broad.mit.edu	37	4	76730143	76730143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:76730143C>T	uc003hiu.2	+	20	2589	c.2414C>T	c.(2413-2415)TCT>TTT	p.S805F	USO1_uc003hiv.2_Missense_Mutation_p.S647F|USO1_uc003hiw.2_Missense_Mutation_p.S640F	NM_003715	NP_003706	O60763	USO1_HUMAN	USO1 homolog, vesicle docking protein	805	Potential.				intracellular protein transport|vesicle fusion with Golgi apparatus	cytosol|Golgi membrane	protein binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			AACTCACAATCTGTGGAGATC	0.323000													13	16					0	0	1	0	0
SDAD1	55153	broad.mit.edu	37	4	76902587	76902587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:76902587G>A	uc003hje.3	-	3	351	c.232C>T	c.(232-234)CCT>TCT	p.P78S	SDAD1_uc003hjf.3_5'UTR|SDAD1_uc011cbr.1_Missense_Mutation_p.P78S	NM_018115	NP_060585	Q9NVU7	SDA1_HUMAN	SDA1 domain containing 1	78					protein transport|ribosomal large subunit biogenesis	nucleolus	protein binding			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			ACCTCTTGAGGAAAATTACTT	0.408000													47	99					0	0	1	0	0
FGF5	2250	broad.mit.edu	37	4	81196149	81196150	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:81196149_81196150GG>AA	uc003hmd.2	+	2	679_680	c.442_443GG>AA	c.(442-444)GGA>AAA	p.G148K	FGF5_uc003hme.2_Intron	NM_004464	NP_004455	P12034	FGF5_HUMAN	fibroblast growth factor 5 isoform 1 precursor	148					cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	fibroblast growth factor receptor binding|growth factor activity			ovary(1)|breast(1)	2						GTCAAAAAAAGGAAAACTCCAT	0.327000													16	34					0	0	1	0	0
FGF5	2250	broad.mit.edu	37	4	81207634	81207634	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:81207634G>A	uc003hmd.2	+	3	852	c.615G>A	c.(613-615)CGG>CGA	p.R205R	FGF5_uc003hme.2_3'UTR	NM_004464	NP_004455	P12034	FGF5_HUMAN	fibroblast growth factor 5 isoform 1 precursor	205					cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	fibroblast growth factor receptor binding|growth factor activity			ovary(1)|breast(1)	2						GCAGCCCCCGGGTTAAACCCC	0.473000													64	82					0	0	1	0	0
DSPP	1834	broad.mit.edu	37	4	88533290	88533290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:88533290G>A	uc003hqu.2	+	3	205	c.85G>A	c.(85-87)GAA>AAA	p.E29K		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein	29					biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		GAGACATGTCGAAAAATCCAT	0.358000													31	47					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94376999	94376999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:94376999C>T	uc011cdt.1	+	11	1990	c.1732C>T	c.(1732-1734)CTT>TTT	p.L578F	GRID2_uc011cdu.1_Missense_Mutation_p.L483F	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	578	Helical; (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TGGCACAGTCCTTCTGGTGGG	0.478000													104	132					0	0	1	0	0
TACR3	6870	broad.mit.edu	37	4	104511147	104511147	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:104511147G>A	uc003hxe.1	-	5	1233	c.1090C>T	c.(1090-1092)CGA>TGA	p.R364*		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	364	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		AAGCCAGCTCGAAATCTGAGG	0.428000													7	22					0	0	1	0	0
LRIT3	345193	broad.mit.edu	37	4	110790880	110790880	+	Silent	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:110790880T>C	uc003hzx.3	+	3	1033	c.840T>C	c.(838-840)GAT>GAC	p.D280D	LRIT3_uc003hzw.3_Silent_p.D142D	NM_198506	NP_940908	Q3SXY7	LRIT3_HUMAN	leucine-rich repeat, immunoglobulin-like and	280	Ig-like.					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;0.0011)		ACGCTGGGGATTACAAATGTA	0.438000													61	70					0	0	1	0	0
EGF	1950	broad.mit.edu	37	4	110884433	110884433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:110884433G>A	uc003hzy.3	+	9	1869	c.1417G>A	c.(1417-1419)GAA>AAA	p.E473K	EGF_uc011cfu.1_Missense_Mutation_p.E431K|EGF_uc011cfv.1_Missense_Mutation_p.E473K	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	473	EGF-like 4.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	ACAACTGGATGAAAAAAGCTG	0.433000													88	118					0	0	1	0	0
NDST3	9348	broad.mit.edu	37	4	119035981	119035981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:119035981G>A	uc003ibx.2	+	4	1493	c.1090G>A	c.(1090-1092)GGA>AGA	p.G364R	NDST3_uc011cgf.1_Intron	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	364	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						GGAAGATGAAGGAGATGACTG	0.418000													36	73					0	0	1	0	0
KIAA1109	84162	broad.mit.edu	37	4	123184124	123184124	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:123184124C>A	uc003ieh.2	+	41	7013	c.6968C>A	c.(6967-6969)TCC>TAC	p.S2323Y	KIAA1109_uc003iel.1_Missense_Mutation_p.S258Y|KIAA1109_uc003iek.2_Missense_Mutation_p.S942Y	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	2323					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AAAAGTAGCTCCCTAACGAGA	0.438000													22	30					1.28384e-07	1.28741e-07	1	1	0
HSPA4L	22824	broad.mit.edu	37	4	128726942	128726942	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:128726942G>A	uc003ifm.2	+	10	1491	c.1238G>A	c.(1237-1239)GGA>GAA	p.G413E	HSPA4L_uc010iny.1_Missense_Mutation_p.G372E|HSPA4L_uc011cgr.1_Missense_Mutation_p.G380E	NM_014278	NP_055093	O95757	HS74L_HUMAN	heat shock 70kDa protein 4-like	413					protein folding|response to unfolded protein	cytoplasm|nucleus	ATP binding|protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4						TTTGAAGATGGAAGTGGGTAA	0.343000													44	50					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138451472	138451472	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:138451472G>A	uc003ihe.3	-	1	2158	c.1771C>T	c.(1771-1773)CCC>TCC	p.P591S	PCDH18_uc003ihf.3_Missense_Mutation_p.P584S|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.P371S|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	591	Cadherin 6.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GCCCCTTTGGGAATGGTGATT	0.458000													148	247					0	0	1	0	0
MAML3	55534	broad.mit.edu	37	4	140810971	140810971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:140810971G>A	uc003ihz.1	-	3	2359	c.1607C>T	c.(1606-1608)CCA>CTA	p.P536L	MAML3_uc011chd.1_Intron	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	536	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					GTACATCATTGGGCTATTTGG	0.408000													190	316					0	0	1	0	0
EDNRA	1909	broad.mit.edu	37	4	148406836	148406836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:148406836G>A	uc003iky.2	+	2	695	c.3G>A	c.(1-3)ATG>ATA	p.M1I	EDNRA_uc011cid.1_Intron|EDNRA_uc010ipe.1_Missense_Mutation_p.M1I|EDNRA_uc010ipf.1_RNA|EDNRA_uc010ipg.1_Missense_Mutation_p.M1I	NM_001957	NP_001948	P25101	EDNRA_HUMAN	endothelin receptor type A isoform a precursor	1					activation of adenylate cyclase activity|artery smooth muscle contraction|cell proliferation|glucose transport|respiratory gaseous exchange	integral to plasma membrane	endothelin-A receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|breast(1)	2	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.154)	Bosentan(DB00559)	GCCTCAAGATGGAAACCCTTT	0.388000													64	89					0	0	1	0	0
GLRB	2743	broad.mit.edu	37	4	158041767	158041767	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:158041767A>G	uc003ipj.2	+	3	384	c.182A>G	c.(181-183)AAC>AGC	p.N61S		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	61	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	AATATCTTGAACAGGTTATTG	0.353000													79	138					0	0	1	0	0
RXFP1	59350	broad.mit.edu	37	4	159572931	159572931	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:159572931G>A	uc003ipz.2	+	18	2080	c.1998G>A	c.(1996-1998)GTG>GTA	p.V666V	RXFP1_uc011cja.1_Silent_p.V561V|RXFP1_uc010iqo.2_Silent_p.V618V|RXFP1_uc011cjb.1_Silent_p.V564V|RXFP1_uc010iqk.2_Silent_p.V534V|RXFP1_uc011cjc.1_Silent_p.V585V|RXFP1_uc011cjd.1_Silent_p.V585V|RXFP1_uc010iql.2_Silent_p.V510V|RXFP1_uc011cje.1_Silent_p.V693V|RXFP1_uc010iqm.2_Silent_p.V633V|RXFP1_uc011cjf.1_Silent_p.V535V|RXFP1_uc010iqn.2_Silent_p.V611V	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	666	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		CTTGGGTAGTGATTTTTATTC	0.328000													39	48					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	166795172	166795172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:166795172G>A	uc003irh.1	+	1	763	c.116G>A	c.(115-117)GGG>GAG	p.G39E	TLL1_uc011cjn.1_Missense_Mutation_p.G39E|TLL1_uc011cjo.1_5'UTR	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	39					cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		ACTTTTGATGGGAACGAAGAG	0.567000													150	212					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	166996032	166996032	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:166996032A>G	uc003irh.1	+	17	2838	c.2191A>G	c.(2191-2193)AAA>GAA	p.K731E	TLL1_uc011cjn.1_Missense_Mutation_p.K754E|TLL1_uc011cjo.1_Missense_Mutation_p.K555E	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	731	EGF-like 2; calcium-binding (Potential).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TTTGCTAGACAAAGATGAATG	0.403000													64	65					0	0	1	0	0
SPOCK3	50859	broad.mit.edu	37	4	167656143	167656143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:167656143C>T	uc003iri.1	-	12	1381	c.1240G>A	c.(1240-1242)GAA>AAA	p.E414K	SPOCK3_uc011cjp.1_Missense_Mutation_p.E371K|SPOCK3_uc011cjq.1_Missense_Mutation_p.E423K|SPOCK3_uc011cjr.1_Missense_Mutation_p.E294K|SPOCK3_uc003irj.1_Missense_Mutation_p.E411K|SPOCK3_uc011cjs.1_Missense_Mutation_p.E363K|SPOCK3_uc011cjt.1_Missense_Mutation_p.E322K|SPOCK3_uc011cju.1_Missense_Mutation_p.E307K|SPOCK3_uc011cjv.1_Missense_Mutation_p.E316K	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	414	Asp-rich.				signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		tcttcaatttcatcttcatca	0.060000													10	19					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183600827	183600827	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:183600827C>T	uc003ivd.1	+	7	1372	c.1335C>T	c.(1333-1335)TTC>TTT	p.F445F	ODZ3_uc003ive.1_5'Flank	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	445	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AGTATGACTTCGTGGAGCTCC	0.532000													61	88					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183658198	183658198	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:183658198C>T	uc003ivd.1	+	16	3242	c.3205C>T	c.(3205-3207)CAG>TAG	p.Q1069*	ODZ3_uc003ive.1_Nonsense_Mutation_p.Q475*	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1069	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TGCATATAATCAGAAAGTCTA	0.363000													73	115					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187524108	187524108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr4:187524108C>T	uc003izf.2	-	20	11619	c.11431G>A	c.(11431-11433)GAG>AAG	p.E3811K		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3811	Extracellular (Potential).|EGF-like 1.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TGTTTCTCCTCCCAGGGATCA	0.507000										HNSCC(5;0.00058)			67	95					0	0	1	0	0
SRD5A1	6715	broad.mit.edu	37	5	6656243	6656243	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:6656243C>T	uc003jdw.2	+	3	703	c.513C>T	c.(511-513)ATC>ATT	p.I171I	SRD5A1_uc011cml.1_RNA|SRD5A1_uc011cmm.1_Silent_p.I124I	NM_001047	NP_001038	P18405	S5A1_HUMAN	steroid-5-alpha-reductase 1	171	Helical; (Potential).				androgen biosynthetic process|cell differentiation|sex determination|sex differentiation	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|electron carrier activity				0					Dutasteride(DB01126)|Finasteride(DB01216)	CAGATCATATCCTAAGGAATC	0.373000													30	37					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	7304358	7304358	+	RNA	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:7304358G>A	uc003jdy.1	-	3		c.353C>T								Homo sapiens cDNA FLJ42124 fis, clone TESTI2009477, weakly  similar to TRICHOHYALIN.																		TTTCAGCTGAGCTCGGTTCTG	0.557000													11	9					0	0	1	0	0
CMBL	134147	broad.mit.edu	37	5	10282332	10282332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:10282332C>T	uc003jes.2	-	5	986	c.535G>A	c.(535-537)GAT>AAT	p.D179N		NM_138809	NP_620164	Q96DG6	CMBL_HUMAN	carboxymethylenebutenolidase	179		By similarity.				cytosol	hydrolase activity|protein binding			skin(1)	1						ATCACAACATCATTTTCAGCA	0.264000													47	56					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	10973718	10973718	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:10973718C>T	uc003jfa.1	-	22	3670	c.3525G>A	c.(3523-3525)CAG>CAA	p.Q1175Q	CTNND2_uc010itt.2_Silent_p.Q1084Q|CTNND2_uc011cmy.1_Silent_p.Q838Q|CTNND2_uc011cmz.1_Silent_p.Q742Q|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.Q767Q	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1175					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GATGGTGGACCTGGTCCTCGA	0.552000													73	88					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11732266	11732266	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:11732266G>A	uc003jfa.1	-	2	301	c.156C>T	c.(154-156)CTC>CTT	p.L52L	CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	52	Potential.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TGACTGAGGCGAGGATGGCAG	0.443000													95	117					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13901387	13901387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:13901387G>A	uc003jfd.2	-	14	2068	c.2026C>T	c.(2026-2028)CTC>TTC	p.L676F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	676	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTGTGGAAGAGGACCTCAAAC	0.498000									Kartagener_syndrome				32	44					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32074117	32074117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:32074117G>A	uc003jhl.2	+	18	3293	c.2905G>A	c.(2905-2907)GAT>AAT	p.D969N	PDZD2_uc003jhm.2_Missense_Mutation_p.D969N|PDZD2_uc011cnx.1_Missense_Mutation_p.D795N	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	969					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CGATGCCAACGATGCCAGTGA	0.612000													30	54					0	0	1	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33684053	33684053	+	Missense_Mutation	SNP	C	T	T	rs150194397		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:33684053C>T	uc003jia.1	-	4	905	c.742G>A	c.(742-744)GTG>ATG	p.V248M	ADAMTS12_uc010iuq.1_Missense_Mutation_p.V248M	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	248	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						AGTGTCTCCACCCATCTCTCC	0.522000										HNSCC(64;0.19)			90	116					0	0	1	0	0
SLC1A3	6507	broad.mit.edu	37	5	36608580	36608580	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:36608580C>T	uc003jkj.3	+	2	531	c.55C>T	c.(55-57)CAG>TAG	p.Q19*	SLC1A3_uc011cox.1_5'UTR|SLC1A3_uc010iuy.2_Nonsense_Mutation_p.Q19*	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	19	Cytoplasmic (Potential).				D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	GGAGAGATTCCAGCAGGGAGT	0.448000													74	106					0	0	1	0	0
C9	735	broad.mit.edu	37	5	39342193	39342193	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:39342193C>A	uc003jlv.3	-	2	272	c.183G>T	c.(181-183)ATG>ATT	p.M61I		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	61	TSP type-1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			GAACACTTACCATTTGTCTGA	0.493000													63	81					1.17597e-53	1.19026e-53	1	1	0
CARD6	84674	broad.mit.edu	37	5	40852530	40852530	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:40852530G>A	uc003jmg.2	+	3	1171	c.1096G>A	c.(1096-1098)GAA>AAA	p.E366K		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	366					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						GGAGAATTTGGAAATTCGAGA	0.458000													34	56					0	0	1	0	0
DHX29	54505	broad.mit.edu	37	5	54566472	54566472	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:54566472A>G	uc003jpx.2	-	19	3047	c.2927T>C	c.(2926-2928)TTG>TCG	p.L976S	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	976	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				CTGGCGCTGCAAAGCACTGGC	0.433000													58	75					0	0	1	0	0
ANKRD55	79722	broad.mit.edu	37	5	55407169	55407169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:55407169C>T	uc003jqu.2	-	10	1558	c.1406G>A	c.(1405-1407)CGA>CAA	p.R469Q	ANKRD55_uc003jqt.2_Missense_Mutation_p.R181Q	NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	468										skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				TTTCTGAGATCGCTGGGCCAT	0.483000													88	99					0	0	1	0	0
ELOVL7	79993	broad.mit.edu	37	5	60060118	60060118	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:60060118G>A	uc003jsi.3	-	7	635	c.435C>T	c.(433-435)TTC>TTT	p.F145F	ELOVL7_uc011cqo.1_Silent_p.F58F|ELOVL7_uc010iwk.2_Silent_p.F145F|ELOVL7_uc003jsj.3_Silent_p.F132F	NM_024930	NP_079206	A1L3X0	ELOV7_HUMAN	elongation of very long chain fatty acids-like	145	Helical; (Potential).				fatty acid elongation, polyunsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0		Lung NSC(810;2.56e-06)|Prostate(74;0.0115)|Breast(144;0.0244)|Ovarian(174;0.0481)				ATACATGAAGGAAAGTCACTT	0.358000													35	54					0	0	1	0	0
MAST4	375449	broad.mit.edu	37	5	66459117	66459117	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:66459117C>T	uc003jut.1	+	28	3611	c.3543C>T	c.(3541-3543)TCC>TCT	p.S1181S	MAST4_uc003juw.2_Silent_p.S1109S|MAST4_uc003jux.2_5'Flank	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	1373						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		GGCGAAAGTCCGCCGGCAACA	0.687000													92	105					0	0	1	0	0
CD180	4064	broad.mit.edu	37	5	66479530	66479530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:66479530C>T	uc003juy.2	-	3	1289	c.1141G>A	c.(1141-1143)GAC>AAC	p.D381N		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	381	LRR 12.|Extracellular (Potential).				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		GCCTCTATGTCATTATGGCTT	0.463000													64	96					0	0	1	0	0
ANKRD34B	340120	broad.mit.edu	37	5	79855816	79855816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:79855816G>A	uc010jam.2	-	4	373	c.23C>T	c.(22-24)TCA>TTA	p.S8L	ANKRD34B_uc003kgw.2_Missense_Mutation_p.S8L|ANKRD34B_uc010jan.2_Missense_Mutation_p.S8L	NM_001004441	NP_001004441	A5PLL1	AN34B_HUMAN	ankyrin repeat domain 34B	8						cytoplasm|nucleus				pancreas(1)	1		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-46)|Epithelial(54;5.64e-41)|all cancers(79;3.24e-36)		TCCTTCACTTGAAATTTCCAT	0.443000													18	46					0	0	1	0	0
TSSK1B	83942	broad.mit.edu	37	5	112769966	112769966	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:112769966G>A	uc003kqm.2	-	1	763	c.571C>T	c.(571-573)CCC>TCC	p.P191S	MCC_uc003kql.3_Intron	NM_032028	NP_114417	Q9BXA7	TSSK1_HUMAN	testis-specific serine kinase 1	191	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|skin(2)|stomach(1)	5		all_cancers(142;0.0138)|all_epithelial(76;0.000445)|Colorectal(10;0.00814)|Prostate(80;0.0115)|Ovarian(225;0.156)		Epithelial(69;4.15e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.49e-08)|all cancers(49;3.2e-06)|COAD - Colon adenocarcinoma(37;0.0371)|Colorectal(14;0.0449)		GGCTGGTAGGGAATGCCCTGC	0.577000													29	34					0	0	1	0	0
KCNN2	3781	broad.mit.edu	37	5	113698856	113698856	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:113698856C>T	uc003kqo.2	+	1	841	c.384C>T	c.(382-384)TTC>TTT	p.F128F		NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	128						integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		GCGCCCTGTTCGAAAAGCGCA	0.488000													27	22					0	0	1	0	0
SNX24	28966	broad.mit.edu	37	5	122343405	122343405	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:122343405C>T	uc011cwo.1	+	7	640	c.471C>T	c.(469-471)GTC>GTT	p.V157V	SNX24_uc010jcy.2_3'UTR	NM_014035	NP_054754	Q9Y343	SNX24_HUMAN	SBBI31 protein	157					cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding				0		Prostate(80;0.0387)	KIRC - Kidney renal clear cell carcinoma(527;0.0897)|Kidney(363;0.137)	OV - Ovarian serous cystadenocarcinoma(64;0.000654)|Epithelial(69;0.0016)|all cancers(49;0.0139)		TTGAAGGAGTCCTCCATGGGA	0.313000													85	133					0	0	1	0	0
HSPA4	3308	broad.mit.edu	37	5	132425303	132425303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:132425303C>T	uc003kyj.2	+	11	1575	c.1294C>T	c.(1294-1296)CTT>TTT	p.L432F		NM_002154	NP_002145	P34932	HSP74_HUMAN	heat shock 70kDa protein 4	432					cellular chaperone-mediated protein complex assembly|protein import into mitochondrial outer membrane|response to unfolded protein	cytoplasm|nucleus	ATP binding			lung(1)|breast(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTCTAAAGTTCTTACATTTTA	0.388000													20	27					0	0	1	0	0
PCDHA12	56137	broad.mit.edu	37	5	140255408	140255408	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:140255408C>T	uc003lic.2	+	1	478	c.351C>T	c.(349-351)TTC>TTT	p.F117F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Silent_p.F117F	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	117	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCAGGTTTTCCATGTGGACG	0.562000													143	211					0	0	1	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307350	140307350	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:140307350G>A	uc003lih.2	+	1	1049	c.873G>A	c.(871-873)GGG>GGA	p.G291G	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Silent_p.G291G	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	291	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTAAAAGTGGGGAGGTGCAAG	0.547000													47	51					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348541	140348541	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:140348541G>A	uc003lii.2	+	1	2430	c.2190G>A	c.(2188-2190)AAG>AAA	p.K730K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Silent_p.K730K	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	730	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCATCATCAAGTGCTACCGCT	0.423000													51	62					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515278	140515278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:140515278G>A	uc003liq.2	+	1	479	c.262G>A	c.(262-264)GAA>AAA	p.E88K		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	88	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTTCTATATGAAAAACTAGA	0.473000													43	95					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553440	140553440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:140553440G>A	uc003lit.2	+	1	1198	c.1024G>A	c.(1024-1026)GAT>AAT	p.D342N		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	342	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGATATAAACGATAATCGACC	0.448000													41	45					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719158	140719158	+	Missense_Mutation	SNP	T	C	C	rs75694557		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:140719158T>C	uc003ljk.1	+	1	805	c.620T>C	c.(619-621)GTT>GCT	p.V207A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.V207A	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	207	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAGAGGCTGTTCACCACCTC	0.597000													43	46					0	0	1	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140772810	140772810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:140772810G>A	uc003lkd.1	+	1	1328	c.430G>A	c.(430-432)GAA>AAA	p.E144K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.E144K	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	144	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAAATTAACGAAATCGCGGT	0.443000													41	65					0	0	1	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140793859	140793859	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:140793859T>A	uc003lkl.1	+	1	1117	c.1117T>A	c.(1117-1119)TTA>ATA	p.L373I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Missense_Mutation_p.L373I	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	373	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTAGCCCTTTTAAATGTGCA	0.398000													30	34					0	0	1	0	0
PCDHGC3	5098	broad.mit.edu	37	5	140857391	140857391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:140857391C>T	uc003lkv.1	+	1	1823	c.1708C>T	c.(1708-1710)CCT>TCT	p.P570S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lku.1_Missense_Mutation_p.P570S|PCDHGC3_uc003lkw.1_Intron	NM_002588	NP_002579	Q9UN70	PCDGK_HUMAN	protocadherin gamma subfamily C, 3 isoform 1	570	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTCCTATATCCTCGGCCAGG	0.597000											OREG0016865	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	56	85					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145427372	145427372	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:145427372A>C	uc003lnt.2	+	6	1335	c.1097A>C	c.(1096-1098)CAT>CCT	p.H366P	SH3RF2_uc011dbl.1_Missense_Mutation_p.H366P|SH3RF2_uc011dbm.1_5'Flank|SH3RF2_uc003lnu.2_5'Flank	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	366							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCTCCAGGACATTCCACAGCC	0.557000													62	94					0	0	1	0	0
SH3TC2	79628	broad.mit.edu	37	5	148407696	148407696	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:148407696G>A	uc003lpu.2	-	11	1751	c.1599C>T	c.(1597-1599)CTC>CTT	p.L533L	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc010jgw.2_Silent_p.L177L|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_Silent_p.L80L|SH3TC2_uc010jgx.2_Silent_p.L526L|SH3TC2_uc003lpv.1_Silent_p.L80L|SH3TC2_uc011dbz.1_Silent_p.L418L	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	533	TPR 1.						binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCGGCCCAGGAGGAAGCAGA	0.562000													90	156					0	0	1	0	0
RBM22	55696	broad.mit.edu	37	5	150072517	150072517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:150072517G>A	uc003lst.2	-	10	1194	c.1072C>T	c.(1072-1074)CCA>TCA	p.P358S		NM_018047	NP_060517	Q9NW64	RBM22_HUMAN	RNA binding motif protein 22	358	Pro-rich.				protein import into nucleus, translocation	catalytic step 2 spliceosome|cytoplasm	calcium-dependent protein binding|nucleotide binding|RNA binding|zinc ion binding				0		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACCACAGCTGGAGGACCACTT	0.542000													55	114					0	0	1	0	0
SLC36A2	153201	broad.mit.edu	37	5	150714950	150714950	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:150714950G>A	uc003lty.2	-	6	814	c.684C>T	c.(682-684)TCC>TCT	p.S228S	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_RNA|SLC36A2_uc003lua.2_Silent_p.S30S|SLC36A2_uc010jhv.2_Silent_p.S228S	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	228	Helical; (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGGCCAGCATGGAGAAGATGG	0.567000													44	59					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154395113	154395113	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:154395113A>C	uc010jih.1	+	1	1854	c.1694A>C	c.(1693-1695)GAA>GCA	p.E565A		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	565	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			AAAAATCTAGAATTAGAAGTC	0.428000													41	40					0	0	1	0	0
C1QTNF2	114898	broad.mit.edu	37	5	159781843	159781843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:159781843C>T	uc003lyd.2	-	2	315	c.311G>A	c.(310-312)CGA>CAA	p.R104Q		NM_031908	NP_114114	Q9BXJ5	C1QT2_HUMAN	C1q and tumor necrosis factor related protein 2	59	Collagen-like.					collagen				skin(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AAAGCCCATTCGTCCCATCAT	0.662000													25	20					0	0	1	0	0
C5orf58	133874	broad.mit.edu	37	5	169661144	169661144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:169661144G>A	uc010jjn.2	+	2	88	c.5G>A	c.(4-6)AGA>AAA	p.R2K	C5orf58_uc003mal.2_RNA	NM_001102609	NP_001096079	C9J3I9	CE058_HUMAN	hypothetical protein LOC133874	2											0						TCTGAAATGAGAGAAATTGCA	0.403000													27	32					0	0	1	0	0
RASGEF1C	255426	broad.mit.edu	37	5	179546356	179546356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:179546356C>T	uc003mlq.2	-	7	1194	c.897G>A	c.(895-897)ATG>ATA	p.M299I	RASGEF1C_uc003mlr.2_Missense_Mutation_p.M299I|RASGEF1C_uc003mlp.3_Missense_Mutation_p.M148I	NM_175062	NP_778232	Q8N431	RGF1C_HUMAN	RasGEF domain family, member 1C	299	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(89;3.44e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0242)|Medulloblastoma(196;0.00498)|all_neural(177;0.0137)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGATGATGGCCATGAGGGAGT	0.642000													46	62					0	0	1	0	0
RASGEF1C	255426	broad.mit.edu	37	5	179555479	179555479	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:179555479G>A	uc003mlq.2	-	4	867	c.570C>T	c.(568-570)ATC>ATT	p.I190I	RASGEF1C_uc003mlr.2_Silent_p.I190I|RASGEF1C_uc003mlp.3_Silent_p.I39I	NM_175062	NP_778232	Q8N431	RGF1C_HUMAN	RasGEF domain family, member 1C	190					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(89;3.44e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0242)|Medulloblastoma(196;0.00498)|all_neural(177;0.0137)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCTCCCTGTGGATGGAGGCTG	0.647000													58	80					0	0	1	0	0
BTNL9	153579	broad.mit.edu	37	5	180486781	180486781	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:180486781G>A	uc003mmt.2	+	11	1758	c.1527G>A	c.(1525-1527)GGG>GGA	p.G509G		NM_152547	NP_689760	Q6UXG8	BTNL9_HUMAN	butyrophilin-like 9 precursor	509	Cytoplasmic (Potential).|B30.2/SPRY.					integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(89;2.45e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CGGTTAGAGGGACGGGCGTCC	0.697000													17	14					0	0	1	0	0
GNB2L1	10399	broad.mit.edu	37	5	180665212	180665212	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr5:180665212T>C	uc003mni.1	-	6	770	c.664A>G	c.(664-666)AAC>GAC	p.N222D	GNB2L1_uc003mnh.1_Missense_Mutation_p.N181D|GNB2L1_uc003mnk.1_Missense_Mutation_p.N144D|GNB2L1_uc003mnj.1_Missense_Mutation_p.N176D|GNB2L1_uc003mnl.1_Missense_Mutation_p.N6D|GNB2L1_uc011dhk.1_3'UTR	NM_006098	NP_006089	P63244	GBLP_HUMAN	guanine nucleotide binding protein (G protein),	222					apoptosis|cell cycle|gastrulation|interspecies interaction between organisms|negative regulation of cell growth|negative regulation of phagocytosis|negative regulation of translation|negative regulation of Wnt receptor signaling pathway|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of gastrulation|positive regulation of GTPase activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein homooligomerization|positive regulation of protein phosphorylation|regulation of cell cycle|regulation of cell division|regulation of establishment of cell polarity|regulation of protein localization|rhythmic process	cytoskeleton|dendrite|midbody|nucleus|perikaryon|perinuclear region of cytoplasm|phagocytic cup|small ribosomal subunit	ion channel inhibitor activity|protein kinase C binding|protein phosphatase binding|protein tyrosine kinase inhibitor activity|receptor tyrosine kinase binding|SH2 domain binding				0	all_cancers(89;8.79e-06)|all_epithelial(37;1.13e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0654)	all_cancers(40;0.000209)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.101)|all cancers(165;0.11)		TTGCCTTCGTTGAGATCCCAT	0.527000													112	121					0	0	1	0	0
BPHL	670	broad.mit.edu	37	6	3137609	3137609	+	Silent	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:3137609T>A	uc003mva.2	+	5	595	c.546T>A	c.(544-546)GTT>GTA	p.V182V	BPHL_uc003muz.2_RNA|BPHL_uc011dht.1_RNA|BPHL_uc003muy.2_Silent_p.V165V	NM_004332	NP_004323	Q86WA6	BPHL_HUMAN	biphenyl hydrolase-like precursor	182				V -> R (in Ref. 6; CAA40859).	cellular amino acid metabolic process|response to toxin	mitochondrion	hydrolase activity				0	Ovarian(93;0.0386)	all_hematologic(90;0.108)				TCCGAGATGTTTCCAAATGGA	0.348000													102	225					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7585756	7585756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:7585756G>A	uc003mxp.1	+	24	8540	c.8261G>A	c.(8260-8262)GGG>GAG	p.G2754E	DSP_uc003mxq.1_Missense_Mutation_p.G2155E	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2754	Plectin 16.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ATCCGGAAGGGGTTCATAGAT	0.542000													53	109					0	0	1	0	0
ZNF311	282890	broad.mit.edu	37	6	28963443	28963443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:28963443G>A	uc003nlu.2	-	7	1849	c.1336C>T	c.(1336-1338)CCC>TCC	p.P446S	ZNF311_uc011dlk.1_Missense_Mutation_p.P354S|ZNF311_uc003nlv.2_Missense_Mutation_p.P354S	NM_001010877	NP_001010877	Q5JNZ3	ZN311_HUMAN	zinc finger protein 311	446	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						CCACACTGGGGACACCCATAG	0.498000													60	150					0	0	1	0	0
DDR1	780	broad.mit.edu	37	6	30866003	30866003	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:30866003C>T	uc003nrr.2	+	17	2629	c.2370C>T	c.(2368-2370)AAC>AAT	p.N790N	DDR1_uc010jse.2_Silent_p.N753N|DDR1_uc003nrq.2_Silent_p.N753N|DDR1_uc003nrs.2_Silent_p.N790N|DDR1_uc003nrt.2_Silent_p.N753N|DDR1_uc011dms.1_Silent_p.N771N|DDR1_uc003nru.2_Silent_p.N753N|DDR1_uc003nrv.2_Silent_p.N796N|DDR1_uc003nrw.1_Silent_p.N525N|DDR1_uc003nrz.1_Silent_p.N115N	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	790	Cytoplasmic (Potential).|Protein kinase.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	TGAGCCGGAACCTCTATGCTG	0.582000													34	94					0	0	1	0	0
BAT2	7916	broad.mit.edu	37	6	31595823	31595823	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:31595823C>T	uc003nvb.3	+	12	1821	c.1572C>T	c.(1570-1572)GTC>GTT	p.V524V	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Silent_p.V524V	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	524	4 X 57 AA type A repeats.|2 X type B repeats.|2-2.					cytoplasm|nucleus	protein binding				0						CACCTGCAGTCCCTAAAGAAC	0.602000													48	277					0	0	1	0	0
HLA-DMA	3108	broad.mit.edu	37	6	32917646	32917646	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:32917646A>G	uc003ocm.2	-	3	480	c.394T>C	c.(394-396)TTC>CTC	p.F132L	HLA-DMA_uc011dqm.1_3'UTR	NM_006120	NP_006111	Q31604	Q31604_HUMAN	major histocompatibility complex, class II, DM	132						integral to membrane|MHC class II protein complex					0						TTCAGCGTGAACACTTCAGCG	0.498000													47	117					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33139583	33139583	+	Silent	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:33139583T>C	uc003ocx.1	-	42	3285	c.3057A>G	c.(3055-3057)GAA>GAG	p.E1019E	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Silent_p.E933E|COL11A2_uc003ocz.1_Silent_p.E912E	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1019	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CTGCACCTCGTTCCCCAGGGG	0.637000													8	25					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33151926	33151926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:33151926C>T	uc003ocx.1	-	8	1343	c.1115G>A	c.(1114-1116)GGA>GAA	p.G372E	COL11A2_uc003ocy.1_Intron|COL11A2_uc003ocz.1_Intron	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	372	Nonhelical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						ACTTACGGCTCCTGAGTGGGC	0.532000													46	128					0	0	1	0	0
SLC39A7	7922	broad.mit.edu	37	6	33169894	33169894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:33169894C>T	uc003odf.2	+	4	743	c.626C>T	c.(625-627)TCC>TTC	p.S209F	RXRB_uc003odb.2_5'Flank|RXRB_uc003odc.2_5'Flank|RXRB_uc003odd.2_5'Flank|RXRB_uc011dqr.1_5'Flank|RXRB_uc011dqs.1_5'Flank|RXRB_uc011dqt.1_5'Flank|RXRB_uc011dqu.1_5'Flank|SLC39A7_uc003odg.2_Missense_Mutation_p.S209F|SLC39A7_uc011dqv.1_Missense_Mutation_p.S84F|SLC39A7_uc003odh.2_5'Flank|HSD17B8_uc003odi.1_5'Flank	NM_001077516	NP_001070984	Q92504	S39A7_HUMAN	solute carrier family 39, member 7	209						endoplasmic reticulum membrane|integral to membrane|membrane fraction	protein binding|zinc ion transmembrane transporter activity			large_intestine(1)	1						CATGGACACTCCCACAGTGGT	0.547000													46	120					0	0	1	0	0
VPS52	6293	broad.mit.edu	37	6	33232210	33232210	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:33232210G>C	uc003odm.1	-	14	1675	c.1465C>G	c.(1465-1467)CAG>GAG	p.Q489E	VPS52_uc003odn.1_Missense_Mutation_p.Q300E	NM_022553	NP_072047	Q8N1B4	VPS52_HUMAN	vacuolar protein sorting 52	489					protein transport	endosome membrane|Golgi apparatus				ovary(4)|skin(1)	5						CGGACGCTCTGAACATTCATC	0.552000													91	211					0	0	1	0	0
SCUBE3	222663	broad.mit.edu	37	6	35199555	35199555	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:35199555A>C	uc003okf.1	+	4	394	c.388A>C	c.(388-390)ATG>CTG	p.M130L	SCUBE3_uc003okg.1_Missense_Mutation_p.M130L|SCUBE3_uc003okh.1_Missense_Mutation_p.M1L	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	130	EGF-like 3; calcium-binding (Potential).				protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						CTGTGTCAACATGATGGGCAG	0.597000													54	150					0	0	1	0	0
BRPF3	27154	broad.mit.edu	37	6	36168369	36168369	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:36168369C>T	uc003olv.3	+	2	494	c.270C>T	c.(268-270)TCC>TCT	p.S90S	BRPF3_uc010jwb.2_Silent_p.S90S|BRPF3_uc011dtj.1_RNA|BRPF3_uc010jwc.2_RNA|BRPF3_uc011dtk.1_Silent_p.S90S	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	90					histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						CTGGCAAGTCCAAGAAACCCT	0.483000													50	120					0	0	1	0	0
BRPF3	27154	broad.mit.edu	37	6	36172574	36172574	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:36172574C>T	uc003olv.3	+	3	1812	c.1588C>T	c.(1588-1590)CAA>TAA	p.Q530*	BRPF3_uc010jwb.2_Nonsense_Mutation_p.Q530*|BRPF3_uc011dtj.1_RNA|BRPF3_uc010jwc.2_RNA|BRPF3_uc011dtk.1_Nonsense_Mutation_p.Q530*	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	530					histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						TCTGCAGTCCCAAAGAAACGC	0.547000													94	258					0	0	1	0	0
CDKN1A	1026	broad.mit.edu	37	6	36652072	36652072	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:36652072G>A	uc003omm.3	+	2	316	c.194G>A	c.(193-195)TGG>TAG	p.W65*	CDKN1A_uc011dtq.1_Nonsense_Mutation_p.W99*|CDKN1A_uc003oml.2_Nonsense_Mutation_p.W65*|CDKN1A_uc003omn.2_Nonsense_Mutation_p.W65*	NM_000389	NP_000380	P38936	CDN1A_HUMAN	cyclin-dependent kinase inhibitor 1A	65					cell cycle arrest|cellular response to extracellular stimulus|cellular response to ionizing radiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|induction of apoptosis by intracellular signals|negative regulation of cell growth|negative regulation of cell proliferation|positive regulation of fibroblast proliferation|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|S phase of mitotic cell cycle|stress-induced premature senescence	cyclin-dependent protein kinase holoenzyme complex|cytosol|nucleoplasm|PCNA-p21 complex	cyclin-dependent protein kinase activating kinase activity|cyclin-dependent protein kinase inhibitor activity|metal ion binding			ovary(1)|breast(1)	2						GACTTCGCCTGGGAGCGTGTG	0.672000									Multiple_Endocrine_Neoplasia_type_1				36	82					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38830211	38830211	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:38830211G>A	uc003ooe.1	+	42	6236	c.5636G>A	c.(5635-5637)AGA>AAA	p.R1879K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATGGATTTCAGAGGCCTAGGA	0.358000													81	198					0	0	1	0	0
MDFI	4188	broad.mit.edu	37	6	41613917	41613917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:41613917C>T	uc003oqp.3	+	4	459	c.130C>T	c.(130-132)CCT>TCT	p.P44S	MDFI_uc003oqq.3_Missense_Mutation_p.P44S|MDFI_uc010jxn.2_Missense_Mutation_p.P44S	NM_005586	NP_005577	Q99750	MDFI_HUMAN	MyoD family inhibitor	44					cytoplasmic sequestering of transcription factor|dorsal/ventral axis specification|negative regulation of DNA binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of Wnt receptor signaling pathway	cytoplasm|nucleus					0	Ovarian(28;0.0327)|Colorectal(47;0.121)		Colorectal(64;0.0123)|COAD - Colon adenocarcinoma(64;0.0264)|KIRC - Kidney renal clear cell carcinoma(1;0.138)			ATCCACTCACCCTGCGGAGGC	0.622000													37	109					0	0	1	0	0
PGC	5225	broad.mit.edu	37	6	41712504	41712504	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:41712504C>T	uc003ora.1	-	2	151	c.102G>A	c.(100-102)AAG>AAA	p.K34K		NM_002630	NP_002621	P20142	PEPC_HUMAN	progastricsin (pepsinogen C) precursor	34					digestion|proteolysis	extracellular space	aspartic-type endopeptidase activity				0	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;0.000132)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			AGCCCTTCTCCTTCATGGTCT	0.473000													24	72					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46826630	46826630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:46826630G>A	uc003oyo.3	-	17	3299	c.3010C>T	c.(3010-3012)CCT>TCT	p.P1004S	GPR116_uc011dwj.1_Missense_Mutation_p.P559S|GPR116_uc011dwk.1_Missense_Mutation_p.P433S|GPR116_uc003oyp.3_Missense_Mutation_p.P862S|GPR116_uc003oyq.3_Missense_Mutation_p.P1004S|GPR116_uc010jzi.1_Missense_Mutation_p.P676S	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1004	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			AGAGAACTAGGATCTGGGGAG	0.488000													45	144					0	0	1	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47251946	47251946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:47251946G>A	uc003oyv.2	-	3	1404	c.971C>T	c.(970-972)TCC>TTC	p.S324F		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	324	Extracellular (Potential).				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			GGGCGTGCTGGACTTCTCGCC	0.557000													101	270					0	0	1	0	0
DEFB112	245915	broad.mit.edu	37	6	50016259	50016259	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:50016259T>A	uc011dws.1	-	1	106	c.106A>T	c.(106-108)ATC>TTC	p.I36F		NM_001037498	NP_001032587	Q30KQ8	DB112_HUMAN	beta-defensin 112 precursor	36					defense response to bacterium	extracellular region				central_nervous_system(1)	1	Lung NSC(77;0.042)					CCTGTGCTGATTTTCTCTGTC	0.313000													41	92					0	0	1	0	0
MCM3	4172	broad.mit.edu	37	6	52129397	52129397	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:52129397A>G	uc003pan.1	-	17	2526	c.2416T>C	c.(2416-2418)TTC>CTC	p.F806L	MCM3_uc011dwu.1_Missense_Mutation_p.F760L	NM_002388	NP_002379	P25205	MCM3_HUMAN	minichromosome maintenance complex component 3	806					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	alpha DNA polymerase:primase complex|centrosome|MCM complex|perinuclear region of cytoplasm	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)|lung(1)|skin(1)	3	Lung NSC(77;0.0931)					CAGATGAGGAAGATGATGCCC	0.537000													73	175					0	0	1	0	0
GSTA1	2938	broad.mit.edu	37	6	52657657	52657657	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:52657657C>T	uc003paz.2	-	6	655	c.543G>A	c.(541-543)CTG>CTA	p.L181L		NM_145740	NP_665683	P08263	GSTA1_HUMAN	glutathione S-transferase alpha 1	181	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Amsacrine(DB00276)|Busulfan(DB01008)|Glutathione(DB00143)	GGGTCACCTTCAGCAGAGGGA	0.542000													114	269					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54806560	54806560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:54806560C>T	uc003pck.2	+	5	2907	c.2791C>T	c.(2791-2793)CGG>TGG	p.R931W		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	931										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TTCAACTGATCGGCGTGTTTA	0.428000													40	122					0	0	1	0	0
GFRAL	389400	broad.mit.edu	37	6	55216326	55216326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:55216326C>T	uc003pcm.1	+	5	732	c.646C>T	c.(646-648)CCA>TCA	p.P216S		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	216	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GAACATGGTTCCACCCCCTAC	0.443000													45	137					0	0	1	0	0
BMP5	653	broad.mit.edu	37	6	55625271	55625271	+	Missense_Mutation	SNP	C	T	T	rs142884641		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:55625271C>T	uc003pcq.2	-	5	1800	c.1088G>A	c.(1087-1089)CGG>CAG	p.R363Q	BMP5_uc011dxf.1_Missense_Mutation_p.R363Q	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	363					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			TCCCAGATCCCGGAAGCTCAC	0.363000													43	98					0	0	1	0	0
BMP5	653	broad.mit.edu	37	6	55739279	55739279	+	Silent	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:55739279A>G	uc003pcq.2	-	1	1097	c.385T>C	c.(385-387)TTA>CTA	p.L129L	BMP5_uc011dxf.1_Silent_p.L129L	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	129					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			GTCCGAGATAACTGTATGCGA	0.522000													58	118					0	0	1	0	0
DST	667	broad.mit.edu	37	6	56325024	56325024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:56325024C>T	uc003pdf.2	-	96	16698	c.16670G>A	c.(16669-16671)CGA>CAA	p.R5557Q	DST_uc003pcz.3_Missense_Mutation_p.R5379Q|DST_uc011dxj.1_Missense_Mutation_p.R5408Q|DST_uc011dxk.1_Missense_Mutation_p.R5419Q|DST_uc003pcy.3_Missense_Mutation_p.R5053Q|DST_uc003pcv.3_Missense_Mutation_p.R175Q|DST_uc003pcw.3_Missense_Mutation_p.R136Q|DST_uc003pcx.3_Missense_Mutation_p.R99Q	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	7452					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			TCCTGGAAGTCGAAGCTTGCT	0.463000													26	95					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	70964873	70964873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:70964873G>A	uc003pfg.3	-	23	1750	c.1591C>T	c.(1591-1593)CCT>TCT	p.P531S	COL9A1_uc003pfe.3_Missense_Mutation_p.P104S|COL9A1_uc003pff.3_Missense_Mutation_p.P288S	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	531	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						TTGGGCCCAGGGAGACCAGGA	0.433000													131	204					0	0	1	0	0
COL12A1	1303	broad.mit.edu	37	6	75799851	75799851	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:75799851C>T	uc003phs.2	-	63	9082	c.8916G>A	c.(8914-8916)GGG>GGA	p.G2972G	COL12A1_uc003pht.2_Silent_p.G1808G	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2972	Triple-helical region (COL1) with 2 imperfections.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						GTCCCTGCATCCCTGGTGTGC	0.627000													76	127					0	0	1	0	0
PRSS35	167681	broad.mit.edu	37	6	84233954	84233954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:84233954G>A	uc003pjz.2	+	2	957	c.794G>A	c.(793-795)CGA>CAA	p.R265Q	PRSS35_uc010kbm.2_Missense_Mutation_p.R265Q	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	265	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		GGCTGGGCACGAGGAGGCATG	0.532000													39	10					0	0	1	0	0
C6orf165	154313	broad.mit.edu	37	6	88140778	88140778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:88140778G>A	uc003plv.2	+	10	1279	c.1187G>A	c.(1186-1188)AGA>AAA	p.R396K	C6orf165_uc003plw.2_Missense_Mutation_p.R208K|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Missense_Mutation_p.R396K	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	396										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		GCAGATTTCAGAAAACTAGAA	0.343000													21	8					0	0	1	0	0
GRIK2	2898	broad.mit.edu	37	6	102307302	102307302	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:102307302G>A	uc003pqp.3	+	10	1707	c.1458G>A	c.(1456-1458)GGG>GGA	p.G486G	GRIK2_uc003pqn.2_Silent_p.G486G|GRIK2_uc003pqo.3_Silent_p.G486G|GRIK2_uc010kcw.2_Silent_p.G486G	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	486	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	TGGAAGATGGGAAATATGGAG	0.383000													48	24					0	0	1	0	0
AIM1	202	broad.mit.edu	37	6	107003646	107003646	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:107003646G>A	uc003prh.2	+	15	4852	c.4365G>A	c.(4363-4365)TGG>TGA	p.W1455*	AIM1_uc003pri.2_Nonsense_Mutation_p.W259*	NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1455	Beta/gamma crystallin 'Greek key' 10.						sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		ATTGTAGCTGGGTTGTATATG	0.418000													102	40					0	0	1	0	0
MCM9	254394	broad.mit.edu	37	6	119245226	119245226	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:119245226A>G	uc003pyh.2	-	3	634	c.371T>C	c.(370-372)TTA>TCA	p.L124S		NM_153255	NP_694987	Q9NXL9	MCM9_HUMAN	minichromosome maintenance complex component 9	124					DNA replication		ATP binding|DNA binding|nucleoside-triphosphatase activity			ovary(1)	1		all_cancers(87;0.122)|all_epithelial(87;0.179)		GBM - Glioblastoma multiforme(226;0.0676)|OV - Ovarian serous cystadenocarcinoma(136;0.194)		AGTGACAGATAAAAAGTGTCC	0.438000													235	63					0	0	1	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762210	130762210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:130762210G>A	uc003qca.2	+	3	1514	c.643G>A	c.(643-645)GGT>AGT	p.G215S	TMEM200A_uc010kfh.2_Missense_Mutation_p.G215S|TMEM200A_uc010kfi.2_Missense_Mutation_p.G215S|TMEM200A_uc003qcb.2_Missense_Mutation_p.G215S	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	215	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		CTCTTTCTCGGGTTTTCGGAG	0.483000													16	5					0	0	1	0	0
TAAR8	83551	broad.mit.edu	37	6	132873848	132873848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:132873848C>T	uc011ecj.1	+	1	17	c.17C>T	c.(16-18)TCC>TTC	p.S6F		NM_053278	NP_444508	Q969N4	TAAR8_HUMAN	trace amine associated receptor 8	6	Extracellular (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00412)|GBM - Glioblastoma multiforme(226;0.00792)		AGCAATTTTTCCCAACCTGTT	0.393000													54	8					0	0	1	0	0
VNN2	8875	broad.mit.edu	37	6	133070863	133070863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:133070863C>T	uc003qdt.2	-	6	1353	c.1342G>A	c.(1342-1344)GAA>AAA	p.E448K	VNN2_uc003qds.2_Missense_Mutation_p.E157K|VNN2_uc010kgb.2_Missense_Mutation_p.E227K|VNN2_uc003qdv.2_Missense_Mutation_p.E395K	NM_004665	NP_004656	O95498	VNN2_HUMAN	vanin 2 isoform 1 precursor	448					cellular component movement|pantothenate metabolic process	anchored to membrane|plasma membrane	pantetheine hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(155;0.00237)|GBM - Glioblastoma multiforme(226;0.0267)		AGATGAATTTCGGTAAGTAGC	0.373000													46	8					0	0	1	0	0
SHPRH	257218	broad.mit.edu	37	6	146256182	146256182	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:146256182T>C	uc003qlf.2	-	13	3250	c.2851A>G	c.(2851-2853)AAG>GAG	p.K951E	SHPRH_uc003qld.2_Missense_Mutation_p.K951E|SHPRH_uc003qle.2_Missense_Mutation_p.K951E|SHPRH_uc003qlg.1_Missense_Mutation_p.K507E|SHPRH_uc003qlj.1_Missense_Mutation_p.K840E|SHPRH_uc003qlh.2_5'Flank	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	951					DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		TCAGAAATCTTCCTGAGTTTT	0.512000													43	17					0	0	1	0	0
SHPRH	257218	broad.mit.edu	37	6	146256482	146256482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:146256482G>A	uc003qlf.2	-	12	3064	c.2665C>T	c.(2665-2667)CCT>TCT	p.P889S	SHPRH_uc003qld.2_Missense_Mutation_p.P889S|SHPRH_uc003qle.2_Missense_Mutation_p.P889S|SHPRH_uc003qlg.1_Missense_Mutation_p.P445S|SHPRH_uc003qlj.1_Missense_Mutation_p.P778S|SHPRH_uc003qlh.2_5'Flank	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	889					DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		AGATGCTGAGGATTCTTCTTG	0.398000													47	12					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152804264	152804264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr6:152804264C>T	uc010kiw.2	-	14	1908	c.1306G>A	c.(1306-1308)GAG>AAG	p.E436K	SYNE1_uc003qot.3_Missense_Mutation_p.E443K|SYNE1_uc003qou.3_Missense_Mutation_p.E436K|SYNE1_uc010kjb.1_Missense_Mutation_p.E419K|SYNE1_uc003qpa.1_Missense_Mutation_p.E436K|SYNE1_uc003qox.1_5'UTR	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	436	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCTGTTTCCTCGTGGACCTGT	0.493000										HNSCC(10;0.0054)			130	43					0	0	1	0	0
GLCCI1	113263	broad.mit.edu	37	7	8126136	8126136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:8126136C>T	uc003srk.2	+	8	2171	c.1612C>T	c.(1612-1614)CAC>TAC	p.H538Y		NM_138426	NP_612435	Q86VQ1	GLCI1_HUMAN	glucocorticoid induced transcript 1	538											0		Ovarian(82;0.0608)		UCEC - Uterine corpus endometrioid carcinoma (126;0.206)		GGGTGAGGACCACATCTCTGC	0.542000													103	135					0	0	1	0	0
SCIN	85477	broad.mit.edu	37	7	12675748	12675748	+	Silent	SNP	A	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:12675748A>T	uc003ssn.3	+	10	1608	c.1398A>T	c.(1396-1398)GGA>GGT	p.G466G	SCIN_uc010ktt.2_RNA|SCIN_uc003sso.3_Silent_p.G219G	NM_001112706	NP_001106177	Q9Y6U3	ADSV_HUMAN	scinderin isoform 1	466	Ca(2+)-dependent actin binding.				actin filament capping|actin filament severing|actin nucleation|calcium ion-dependent exocytosis|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of megakaryocyte differentiation|positive regulation of secretion|regulation of chondrocyte differentiation	cell cortex|cytoskeleton	1-phosphatidylinositol binding|actin filament binding|calcium ion binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding			ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		CCCTTGGAGGACAGGCTGTGC	0.483000													19	30					0	0	1	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18067089	18067089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:18067089G>A	uc003stz.2	-	1	398	c.317C>T	c.(316-318)CCA>CTA	p.P106L		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	106					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					GGCAGAGATTGGGGACCGGCT	0.463000													66	104					0	0	1	0	0
CCDC129	223075	broad.mit.edu	37	7	31611742	31611742	+	Missense_Mutation	SNP	C	T	T	rs139174342		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:31611742C>T	uc003tcj.1	+	6	1328	c.335C>T	c.(334-336)CCC>CTC	p.P112L	CCDC129_uc011kad.1_Missense_Mutation_p.P122L|CCDC129_uc003tci.1_Missense_Mutation_p.P111L|CCDC129_uc011kae.1_Missense_Mutation_p.P138L|CCDC129_uc003tck.1_Missense_Mutation_p.P20L	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	112											0						TCAGAAACTCCCATCCTATCC	0.388000													8	20					0	0	1	0	0
ELMO1	9844	broad.mit.edu	37	7	37311465	37311465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:37311465C>T	uc003tfk.1	-	5	522	c.215G>A	c.(214-216)GGC>GAC	p.G72D	ELMO1_uc011kbc.1_5'UTR|ELMO1_uc010kxg.1_Missense_Mutation_p.G72D	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	72					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						AAGGATAGTGCCATTTTTTAT	0.358000													34	84					0	0	1	0	0
GPR141	353345	broad.mit.edu	37	7	37780653	37780653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:37780653G>A	uc003tfm.1	+	1	658	c.658G>A	c.(658-660)GAG>AAG	p.E220K	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	220	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						ATCCCACCAGGAGTTCTGGGC	0.423000													97	134					0	0	1	0	0
POU6F2	11281	broad.mit.edu	37	7	39243877	39243878	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:39243877_39243878CC>TT	uc003thb.1	+	3	276_277	c.234_235CC>TT	c.(232-237)GACCAA>GATTAA	p.Q79*	POU6F2_uc010kxo.2_Nonsense_Mutation_p.Q71*	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	79					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GCACTCCTGACCAACACCAGGC	0.495000													29	54					0	0	1	0	0
DBNL	28988	broad.mit.edu	37	7	44091429	44091429	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:44091429A>G	uc003tjp.3	+	3	238	c.140A>G	c.(139-141)GAG>GGG	p.E47G	DBNL_uc003tjn.2_Intron|DBNL_uc003tjo.3_Missense_Mutation_p.E47G|DBNL_uc003tjr.3_Intron|DBNL_uc003tjq.3_Missense_Mutation_p.E47G|DBNL_uc011kbm.1_Missense_Mutation_p.E47G|DBNL_uc011kbn.1_Intron|DBNL_uc011kbo.1_Intron|DBNL_uc011kbp.1_Missense_Mutation_p.E47G|DBNL_uc011kbq.1_Intron|DBNL_uc011kbr.1_5'UTR|DBNL_uc011kbs.1_5'Flank	NM_001014436	NP_001014436	Q9UJU6	DBNL_HUMAN	drebrin-like isoform b	47	ADF-H.				activation of JUN kinase activity|cellular component disassembly involved in apoptosis|endocytosis|Rac protein signal transduction	cell cortex|cytoskeleton|cytosol|lamellipodium	actin binding|enzyme activator activity|identical protein binding			skin(1)	1						TCTGCTGCAGAGGGTGGCCTG	0.572000													52	48					0	0	1	0	0
ADCY1	107	broad.mit.edu	37	7	45744164	45744164	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:45744164C>T	uc003tne.3	+	17	2784	c.2766C>T	c.(2764-2766)ATC>ATT	p.I922I		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	922	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TCAAGACCATCGGGAGCACCT	0.502000													45	71					0	0	1	0	0
ZPBP	11055	broad.mit.edu	37	7	49977200	49977200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:49977200G>A	uc003tou.2	-	8	1050	c.980C>T	c.(979-981)TCA>TTA	p.S327L	ZPBP_uc011kci.1_Missense_Mutation_p.S253L|ZPBP_uc010kyw.2_Missense_Mutation_p.S326L	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	327					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					GGGGTTATATGATCCAGGGCT	0.308000													80	124					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53104211	53104211	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:53104211T>G	uc003tpz.2	+	1	863	c.847T>G	c.(847-849)TTC>GTC	p.F283V		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	283											0						TAGGGTCTCCTTCGCCCTCGA	0.622000													39	63					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55211055	55211055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:55211055C>T	uc003tqk.2	+	3	544	c.298C>T	c.(298-300)CCT>TCT	p.P100S	EGFR_uc003tqh.2_Missense_Mutation_p.P100S|EGFR_uc003tqi.2_Missense_Mutation_p.P100S|EGFR_uc003tqj.2_Missense_Mutation_p.P100S|EGFR_uc010kzg.1_Missense_Mutation_p.P100S|EGFR_uc011kco.1_Missense_Mutation_p.P47S	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	100	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.V30_R297>G(5)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	GGAGCGAATTCCTTTGGAAAA	0.408000		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			65	83					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55211104	55211104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:55211104C>T	uc003tqk.2	+	3	593	c.347C>T	c.(346-348)TCC>TTC	p.S116F	EGFR_uc003tqh.2_Missense_Mutation_p.S116F|EGFR_uc003tqi.2_Missense_Mutation_p.S116F|EGFR_uc003tqj.2_Missense_Mutation_p.S116F|EGFR_uc010kzg.1_Missense_Mutation_p.S116F|EGFR_uc011kco.1_Missense_Mutation_p.S63F	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	116	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.V30_R297>G(5)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TACGAAAATTCCTATGCCTTA	0.463000		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			57	73					0	0	1	0	0
WBSCR17	64409	broad.mit.edu	37	7	71130487	71130487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:71130487G>A	uc003tvy.2	+	7	1172	c.1172G>A	c.(1171-1173)GGC>GAC	p.G391D	WBSCR17_uc003tvz.2_Missense_Mutation_p.G90D	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	391	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				AGCAACATTGGCTTCTACACC	0.537000													66	69					0	0	1	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72336983	72336983	+	RNA	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:72336983G>A	uc010lal.1	-	1		c.2673C>T				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						AGGGGAGGCCGGCCCGGCTGA	0.522000													194	255					0	0	1	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	74004223	74004223	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:74004223G>A	uc003uaq.2	+	23	2802	c.2409G>A	c.(2407-2409)CGG>CGA	p.R803R	GTF2IRD1_uc010lbq.2_Silent_p.R820R|GTF2IRD1_uc003uap.2_Silent_p.R788R|GTF2IRD1_uc003uar.1_Silent_p.R788R	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	803	GTF2I-like 5.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						TGATCCTGCGGGAGCAGGTGA	0.597000													32	55					0	0	1	0	0
SPDYE5	442590	broad.mit.edu	37	7	75130895	75130895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:75130895C>T	uc011kfy.1	+	6	906	c.770C>T	c.(769-771)CCG>CTG	p.P257L		NM_001099435	NP_001092905	A6NIY4	SPDE5_HUMAN	speedy homolog E5	257	Arg-rich.										0						TCCATGAACCCGAGGGCCAGG	0.592000													10	448					0	0	1	0	0
DTX2	113878	broad.mit.edu	37	7	76111877	76111877	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:76111877C>T	uc003uff.3	+	5	877	c.321C>T	c.(319-321)GGC>GGT	p.G107G	DTX2_uc011kgk.1_Silent_p.G16G|DTX2_uc003ufg.3_Silent_p.G107G|DTX2_uc003ufh.3_Silent_p.G107G|DTX2_uc003ufj.3_Silent_p.G107G	NM_020892	NP_065943	Q86UW9	DTX2_HUMAN	deltex 2 isoform a	107	WWE 2.				Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			ovary(1)|skin(1)	2						CAGCCCCTGGCCGAGGTGTCG	0.587000													62	59					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82545171	82545171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:82545171C>T	uc003uhx.2	-	7	12420	c.12131G>A	c.(12130-12132)CGA>CAA	p.R4044Q	PCLO_uc003uhv.2_Missense_Mutation_p.R4044Q|PCLO_uc010lec.2_Missense_Mutation_p.R1009Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3975					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GACATAATTTCGTGGAGTATG	0.408000													15	29					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82585807	82585807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:82585807G>A	uc003uhx.2	-	5	4751	c.4462C>T	c.(4462-4464)CCT>TCT	p.P1488S	PCLO_uc003uhv.2_Missense_Mutation_p.P1488S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1419					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTGCTGGAAGGAATATCTTGT	0.348000													17	27					0	0	1	0	0
SAMD9	54809	broad.mit.edu	37	7	92732610	92732610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:92732610G>A	uc003umf.2	-	3	3057	c.2801C>T	c.(2800-2802)TCA>TTA	p.S934L	SAMD9_uc003umg.2_Missense_Mutation_p.S934L	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	934						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			CTGTGATAGTGAAATGGTGGT	0.398000													13	21					0	0	1	0	0
SAMD9	54809	broad.mit.edu	37	7	92734352	92734352	+	Silent	SNP	C	T	T	rs145911444	byFrequency	TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:92734352C>T	uc003umf.2	-	3	1315	c.1059G>A	c.(1057-1059)ACG>ACA	p.T353T	SAMD9_uc003umg.2_Silent_p.T353T	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	353						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			CTTTATTTTTCGTAATGTCCT	0.318000													36	61					0	0	1	0	0
SAMD9	54809	broad.mit.edu	37	7	92734676	92734676	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:92734676C>T	uc003umf.2	-	3	991	c.735G>A	c.(733-735)GGG>GGA	p.G245G	SAMD9_uc003umg.2_Silent_p.G245G	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	245						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			CAACAATTTTCCCATGGGGTT	0.378000													62	122					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761137	92761137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:92761137G>A	uc003umh.1	-	5	5364	c.4148C>T	c.(4147-4149)TCC>TTC	p.S1383F	SAMD9L_uc003umj.1_Missense_Mutation_p.S1383F|SAMD9L_uc003umi.1_Missense_Mutation_p.S1383F|SAMD9L_uc010lfb.1_Missense_Mutation_p.S1383F|SAMD9L_uc003umk.1_Missense_Mutation_p.S1383F|SAMD9L_uc010lfc.1_Missense_Mutation_p.S1383F|SAMD9L_uc010lfd.1_Missense_Mutation_p.S1383F|SAMD9L_uc011khx.1_3'UTR	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1383										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			GGCCAAAATGGAATTTTGTTT	0.378000													96	150					0	0	1	0	0
CYP3A7	1551	broad.mit.edu	37	7	99312215	99312215	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:99312215T>G	uc003uru.2	-	8	866	c.761A>C	c.(760-762)AAA>ACA	p.K254T	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	254					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					TTTTATCTGTTTTACAGATTT	0.308000													43	50					0	0	1	0	0
FBXO24	26261	broad.mit.edu	37	7	100187673	100187673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:100187673C>T	uc003uvm.1	+	2	406	c.113C>T	c.(112-114)TCC>TTC	p.S38F	FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Missense_Mutation_p.S38F|FBXO24_uc003uvn.1_Intron|uc011kjy.1_RNA|FBXO24_uc011kjz.1_Missense_Mutation_p.S76F|FBXO24_uc011kka.1_Missense_Mutation_p.S26F	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	38	F-box.					ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					AATCCGATTTCCATCCAGTTG	0.567000													72	88					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100350389	100350389	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:100350389C>T	uc003uwj.2	+	14	2826	c.2661C>T	c.(2659-2661)ATC>ATT	p.I887I	ZAN_uc003uwk.2_Silent_p.I887I|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	887	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AACCCACCATCCCCATTGAAG	0.502000													53	23					0	0	1	0	0
PIK3CG	5294	broad.mit.edu	37	7	106523592	106523592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:106523592C>T	uc003vdv.3	+	8	2829	c.2744C>T	c.(2743-2745)TCC>TTC	p.S915F	PIK3CG_uc003vdu.2_Missense_Mutation_p.S915F|PIK3CG_uc003vdw.2_Missense_Mutation_p.S915F	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	915	PI3K/PI4K.				G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						AAAGAAAAATCCCCTACTGAA	0.423000													44	17					0	0	1	0	0
FOXP2	93986	broad.mit.edu	37	7	114270030	114270030	+	Silent	SNP	G	A	A	rs138037147		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:114270030G>A	uc003vhb.2	+	5	941	c.567G>A	c.(565-567)CAG>CAA	p.Q189Q	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Silent_p.Q214Q|FOXP2_uc003vha.2_Silent_p.Q97Q|FOXP2_uc011kmu.1_Silent_p.Q206Q|FOXP2_uc011kmv.1_Silent_p.Q189Q|FOXP2_uc010ljz.1_Silent_p.Q97Q|FOXP2_uc003vgt.1_RNA|FOXP2_uc003vgv.1_Silent_p.Q189Q|FOXP2_uc003vgx.2_Silent_p.Q189Q|FOXP2_uc003vhd.2_Silent_p.Q189Q|FOXP2_uc003vhc.2_Silent_p.Q214Q	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	189	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						agcagcagcagcaacagcaTC	0.204000													3	62					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117305614	117305614	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:117305614T>A	uc003vjd.2	+	26	4370	c.4238T>A	c.(4237-4239)TTT>TAT	p.F1413Y	CFTR_uc011knq.1_Missense_Mutation_p.F819Y	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	1413	Cytoplasmic (Potential).|ABC transporter 2.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TGCCAACAATTTTTGGTGAGT	0.343000									Cystic_Fibrosis				40	13					0	0	1	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121678851	121678851	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:121678851C>G	uc003vjy.2	+	19	5805	c.5410C>G	c.(5410-5412)CTG>GTG	p.L1804V	PTPRZ1_uc003vjz.2_Missense_Mutation_p.L937V|PTPRZ1_uc011knt.1_Missense_Mutation_p.L394V	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1804	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						CCAAGGCCCACTGAAATCCAC	0.383000													61	12					0	0	1	0	0
FEZF1	389549	broad.mit.edu	37	7	121944267	121944267	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:121944267G>A	uc003vkd.2	-	1	299	c.225C>T	c.(223-225)ATC>ATT	p.I75I	FEZF1_uc003vkc.2_Silent_p.I75I|uc010lko.1_RNA|uc003vkf.1_5'Flank	NM_001024613	NP_001019784	A0PJY2	FEZF1_HUMAN	FEZ family zinc finger 1 isoform 1	75					cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)	3						GCACGAAGGGGATCATGCAGG	0.572000													53	13					0	0	1	0	0
PODXL	5420	broad.mit.edu	37	7	131195655	131195655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:131195655G>A	uc003vqw.3	-	2	896	c.638C>T	c.(637-639)TCA>TTA	p.S213L	PODXL_uc003vqx.3_Missense_Mutation_p.S213L	NM_001018111	NP_001018121	O00592	PODXL_HUMAN	podocalyxin-like isoform 1 precursor	213	Thr-rich.|Extracellular (Potential).				cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle				breast(2)|pancreas(1)	3	Melanoma(18;0.162)					TGAACTGCTTGAAATTTTCAT	0.532000													38	44					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131866308	131866308	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:131866308C>G	uc003vra.3	-	18	3553	c.3324G>C	c.(3322-3324)CAG>CAC	p.Q1108H		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1108	Extracellular (Potential).|IPT/TIG 3.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TCAGGTCTGACTGGTGGTCAG	0.577000													68	60					0	0	1	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138400541	138400541	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:138400541A>G	uc003vuf.2	-	19	2463	c.2225T>C	c.(2224-2226)CTG>CCG	p.L742P	ATP6V0A4_uc003vug.2_Missense_Mutation_p.L742P|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.L742P	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	742	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						CCAGAGCCGCAGGTAGGAGGC	0.562000													4	201					0	0	1	0	0
JHDM1D	80853	broad.mit.edu	37	7	139820289	139820289	+	Silent	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:139820289A>C	uc003vvm.2	-	8	1096	c.1092T>G	c.(1090-1092)GCT>GCG	p.A364A	JHDM1D_uc010lng.2_5'Flank	NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	364	JmjC.				midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					TCCCCCCAAAAGCCATACAGT	0.378000													63	112					0	0	1	0	0
CLEC5A	23601	broad.mit.edu	37	7	141629994	141629994	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:141629994G>A	uc003vwv.1	-	7	674	c.477C>T	c.(475-477)TTC>TTT	p.F159F	CLEC5A_uc011krm.1_Missense_Mutation_p.S135L|CLEC5A_uc003vww.1_Silent_p.F158F|CLEC5A_uc010lnq.1_Silent_p.F136F|CLEC5A_uc010lnr.1_RNA	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	159	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					TCGCACAGTTGAAATTCTGAT	0.348000													58	75					0	0	1	0	0
CLEC5A	23601	broad.mit.edu	37	7	141631620	141631620	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:141631620G>A	uc003vwv.1	-	6	549	c.352C>T	c.(352-354)CTT>TTT	p.L118F	CLEC5A_uc011krm.1_Missense_Mutation_p.L95F|CLEC5A_uc003vww.1_Missense_Mutation_p.L117F|CLEC5A_uc010lnq.1_Missense_Mutation_p.L95F|CLEC5A_uc010lnr.1_RNA	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	118	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					ATGTCCTGAAGAAACTTCTGG	0.373000													42	54					0	0	1	0	0
CLEC5A	23601	broad.mit.edu	37	7	141635679	141635679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:141635679C>T	uc003vwv.1	-	5	477	c.280G>A	c.(280-282)GAA>AAA	p.E94K	CLEC5A_uc011krm.1_Missense_Mutation_p.E71K|CLEC5A_uc003vww.1_Missense_Mutation_p.E94K|CLEC5A_uc010lnq.1_Missense_Mutation_p.E71K|CLEC5A_uc010lnr.1_Intron	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	94	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					TCCCTGCTTTCATTCCAAGAT	0.428000													43	72					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142651298	142651298	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:142651298G>A	uc003wcb.2	-	8	1107	c.897C>T	c.(895-897)TTC>TTT	p.F299F		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	299	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					TGACCATCTGGAAGAGCTTGC	0.552000													22	24					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143039157	143039157	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:143039157T>G	uc003wcr.1	+	15	1805	c.1718T>G	c.(1717-1719)CTG>CGG	p.L573R	CLCN1_uc011ktc.1_Missense_Mutation_p.L185R	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	573	Helical; (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					GCCCAGAGCCTGCAGCCCTCT	0.537000													46	78					0	0	1	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144077078	144077078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:144077078C>T	uc003wel.2	+	15	4841	c.4723C>T	c.(4723-4725)CGT>TGT	p.R1575C	ARHGEF5_uc003wem.2_Missense_Mutation_p.R376C	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	1575					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					CCCAGAGGTCCGTGCACAGAA	0.577000													77	119					0	0	1	0	0
ZNF425	155054	broad.mit.edu	37	7	148802030	148802030	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:148802030G>A	uc003wfj.2	-	4	1006	c.933C>T	c.(931-933)TTC>TTT	p.F311F		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	311	C2H2-type 4.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			ACTGCTGCACGAAGGCCCGGC	0.657000													30	51					0	0	1	0	0
ZNF746	155061	broad.mit.edu	37	7	149191301	149191301	+	Silent	SNP	G	A	A	rs139163284		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:149191301G>A	uc003wfw.2	-	2	589	c.318C>T	c.(316-318)TCC>TCT	p.S106S	ZNF746_uc010lpi.2_Silent_p.S106S	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	106	KRAB.				negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			CTACCTTAGGGGACTCCCCCT	0.657000													64	126					0	0	1	0	0
DPP6	1804	broad.mit.edu	37	7	154561270	154561270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:154561270C>T	uc003wlk.2	+	9	1156	c.1027C>T	c.(1027-1029)CAC>TAC	p.H343Y	DPP6_uc003wli.2_Missense_Mutation_p.H279Y|DPP6_uc003wlm.2_Missense_Mutation_p.H281Y|DPP6_uc011kvq.1_Missense_Mutation_p.H236Y	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	343	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			GAAGCCCTACCACTATCCCAA	0.537000													9	17					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157691385	157691385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr7:157691385G>A	uc003wno.2	-	12	1889	c.1768C>T	c.(1768-1770)CTT>TTT	p.L590F	PTPRN2_uc003wnp.2_Missense_Mutation_p.L573F|PTPRN2_uc003wnq.2_Missense_Mutation_p.L561F|PTPRN2_uc003wnr.2_Missense_Mutation_p.L552F|PTPRN2_uc011kwa.1_Missense_Mutation_p.L613F	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	590	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CCGGTTTGAAGAATTTTCAGT	0.522000													162	257					0	0	1	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163215	163215	+	RNA	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:163215G>A	uc010lra.2	-	4		c.918C>T			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						AGATACACATGTATTTAGAGT	0.274000													4	26					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2876092	2876092	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:2876092A>T	uc011kwk.1	-	52	8329	c.7939T>A	c.(7939-7941)TTT>ATT	p.F2647I	CSMD1_uc011kwj.1_Missense_Mutation_p.F1976I|CSMD1_uc010lrg.2_Intron	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2647	Extracellular (Potential).|Sushi 17.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTGCACGTAAATATAGCTGTG	0.478000													150	39					0	0	1	0	0
SLC7A2	6542	broad.mit.edu	37	8	17417917	17417917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:17417917C>T	uc011kyc.1	+	9	1548	c.1379C>T	c.(1378-1380)TCG>TTG	p.S460L	SLC7A2_uc011kyd.1_Missense_Mutation_p.S499L|SLC7A2_uc011kye.1_Missense_Mutation_p.S500L|SLC7A2_uc011kyf.1_Missense_Mutation_p.S460L	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	460	Cytoplasmic (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	AGGGTAACCTCGAAGAGTGAG	0.537000													62	14					0	0	1	0	0
SH2D4A	63898	broad.mit.edu	37	8	19192312	19192312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:19192312G>A	uc003wzb.2	+	4	793	c.457G>A	c.(457-459)GAG>AAG	p.E153K	SH2D4A_uc011kym.1_Missense_Mutation_p.E108K|SH2D4A_uc003wzc.2_Missense_Mutation_p.E153K	NM_022071	NP_071354	Q9H788	SH24A_HUMAN	SH2 domain containing 4A	153						cytoplasm|nucleus	protein binding				0				Colorectal(111;0.0732)		GGCAGAAAAGGAGGAACTGGA	0.473000													43	13					0	0	1	0	0
SFTPC	6440	broad.mit.edu	37	8	22020245	22020245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:22020245G>A	uc003xax.3	+	2	359	c.201G>A	c.(199-201)ATG>ATA	p.M67I	SFTPC_uc003xaw.3_Missense_Mutation_p.M116I|SFTPC_uc011kza.1_Missense_Mutation_p.M67I|SFTPC_uc003xaz.2_Missense_Mutation_p.M67I|SFTPC_uc003xay.3_Missense_Mutation_p.M67I|BMP1_uc011kzb.1_5'Flank|BMP1_uc003xba.2_5'Flank|BMP1_uc003xbb.2_5'Flank|BMP1_uc003xbe.2_5'Flank|BMP1_uc003xbc.2_5'Flank|BMP1_uc003xbd.2_5'Flank|BMP1_uc003xbf.2_5'Flank|BMP1_uc003xbg.2_5'Flank|BMP1_uc011kzc.1_5'Flank|BMP1_uc003xbh.2_5'Flank|BMP1_uc003xbi.2_5'Flank	NM_003018	NP_003009	P11686	PSPC_HUMAN	surfactant protein C precursor	67				TEM -> FPQ (in Ref. 4; AAB60332).	respiratory gaseous exchange	extracellular space					0				Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		ACACGGAGATGGTGAGAGGTG	0.592000													70	21					0	0	1	0	0
STC1	6781	broad.mit.edu	37	8	23708982	23708982	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:23708982G>A	uc003xdw.1	-	3	608	c.324C>T	c.(322-324)TTC>TTT	p.F108F		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor	108					cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity			skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		GAATGGCGAGGAAGACCTTGG	0.527000													49	10					0	0	1	0	0
EBF2	64641	broad.mit.edu	37	8	25766040	25766040	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:25766040G>A	uc003xes.1	-	7	600	c.583C>T	c.(583-585)CAG>TAG	p.Q195*	PPP2R2A_uc003xek.2_Intron	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	195					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		AAACAATTCTGATTGCACTTG	0.378000													29	8					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30702970	30702970	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:30702970T>A	uc003xil.2	-	1	3564	c.3564A>T	c.(3562-3564)GAA>GAT	p.E1188D		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1188										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CAATTTGATTTTCTTTTTCTA	0.313000													14	8					0	0	1	0	0
NRG1	3084	broad.mit.edu	37	8	32611948	32611948	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:32611948C>T	uc003xiv.2	+	8	1276	c.759C>T	c.(757-759)CTC>CTT	p.L253L	NRG1_uc011lbf.1_Silent_p.L250L|NRG1_uc010lvo.2_Silent_p.L250L|NRG1_uc003xiu.2_Silent_p.L258L|NRG1_uc003xiw.2_Silent_p.L250L|NRG1_uc003xit.2_Silent_p.L253L|NRG1_uc010lvr.2_5'UTR|NRG1_uc010lvs.2_5'UTR|NRG1_uc010lvp.2_Silent_p.L207L|NRG1_uc010lvq.2_Silent_p.L190L|NRG1_uc011lbg.1_Silent_p.L99L|NRG1_uc011lbh.1_Silent_p.L96L|NRG1_uc003xiz.1_RNA|NRG1_uc003xja.2_Silent_p.L64L	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	253	Helical; Note=Internal signal sequence; (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		GCATCGCCCTCCTTGTGGTCG	0.517000													40	12					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39502882	39502882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:39502882G>A	uc003xni.2	+	11	935	c.935G>A	c.(934-936)GGA>GAA	p.G312E	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.G288E	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	312	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			GGTTTGGAGGGATTTTCGGTT	0.313000													49	15					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41530090	41530090	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:41530090C>T	uc003xok.2	-	38	4962	c.4878G>A	c.(4876-4878)GTG>GTA	p.V1626V	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Intron|ANK1_uc003xoi.2_Silent_p.V1626V|ANK1_uc003xoj.2_Silent_p.V1626V|ANK1_uc003xol.2_Intron|ANK1_uc003xom.2_Silent_p.V1667V	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1626	55 kDa regulatory domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CATCTGAATCCACTGTGTCGT	0.562000													180	43					0	0	1	0	0
PRKDC	5591	broad.mit.edu	37	8	48794651	48794651	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:48794651G>A	uc003xqi.2	-	38	4841	c.4784C>T	c.(4783-4785)GCC>GTC	p.A1595V	PRKDC_uc003xqj.2_Missense_Mutation_p.A1595V|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1595					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				GTTCAAAACGGCACTCACCTG	0.393000								NHEJ					144	67					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52321802	52321802	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:52321802G>A	uc003xqu.3	-	17	2483	c.2382C>T	c.(2380-2382)ACC>ACT	p.T794T	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	794					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TGTGGTCGGGGGTGACGGCCG	0.731000													6	12					0	0	1	0	0
ST18	9705	broad.mit.edu	37	8	53045673	53045673	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:53045673C>T	uc003xqz.2	-	16	2544	c.2388G>A	c.(2386-2388)AGG>AGA	p.R796R	ST18_uc011ldq.1_Silent_p.R443R|ST18_uc011ldr.1_Silent_p.R761R|ST18_uc011lds.1_Silent_p.R701R|ST18_uc003xra.2_Silent_p.R796R	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	796						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				CACCACCTTTCCTTGCACGAG	0.478000													65	164					0	0	1	0	0
ST18	9705	broad.mit.edu	37	8	53045802	53045802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:53045802C>T	uc003xqz.2	-	15	2516	c.2360G>A	c.(2359-2361)AGA>AAA	p.R787K	ST18_uc011ldq.1_Missense_Mutation_p.R434K|ST18_uc011ldr.1_Missense_Mutation_p.R752K|ST18_uc011lds.1_Missense_Mutation_p.R692K|ST18_uc003xra.2_Missense_Mutation_p.R787K	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	787	C2HC-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				ATCCTACCTTCTGTGGGAAGC	0.498000													49	122					0	0	1	0	0
CPA6	57094	broad.mit.edu	37	8	68419072	68419072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:68419072G>A	uc003xxq.3	-	6	842	c.586C>T	c.(586-588)CAT>TAT	p.H196Y	CPA6_uc003xxr.3_Missense_Mutation_p.H48Y|CPA6_uc003xxs.2_Missense_Mutation_p.H196Y	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor	196	Substrate binding (By similarity).	Zinc; catalytic (By similarity).			proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			TCTCTTGCATGAATACCACAG	0.423000													126	72					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	69030803	69030803	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:69030803G>A	uc003xxv.1	+	27	3372	c.3345G>A	c.(3343-3345)AGG>AGA	p.R1115R		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1115					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						ACAGCAATAGGAATTCCATCG	0.463000													80	217					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	69033155	69033155	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:69033155G>A	uc003xxv.1	+	30	3623	c.3596_splice	c.e30-1	p.E1199_splice		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a						G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TGTTTATTTAGAATTTCAACA	0.398000													13	24					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77764005	77764005	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:77764005C>T	uc003yav.2	+	10	5100	c.4713C>T	c.(4711-4713)CTC>CTT	p.L1571L	ZFHX4_uc003yau.1_Silent_p.L1616L|ZFHX4_uc003yaw.1_Silent_p.L1571L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1571	C2H2-type 13.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GGTCTGTGCTCCACCAGACAA	0.517000										HNSCC(33;0.089)			70	52					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77764324	77764324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:77764324C>T	uc003yav.2	+	10	5419	c.5032C>T	c.(5032-5034)CCT>TCT	p.P1678S	ZFHX4_uc003yau.1_Missense_Mutation_p.P1723S|ZFHX4_uc003yaw.1_Missense_Mutation_p.P1678S	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1678	Gln-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GCCTCATTTTCCTATGACCCC	0.473000										HNSCC(33;0.089)			39	113					0	0	1	0	0
CA2	760	broad.mit.edu	37	8	86392938	86392938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:86392938G>A	uc003ydk.2	+	7	883	c.703G>A	c.(703-705)GAA>AAA	p.E235K		NM_000067	NP_000058	P00918	CAH2_HUMAN	carbonic anhydrase II	235					one-carbon metabolic process	apical part of cell	carbonate dehydratase activity|zinc ion binding			central_nervous_system(1)	1					Acetazolamide(DB00819)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dorzolamide(DB00869)|Ethinamate(DB01031)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	TGGGGAGGGTGAACCCGAAGA	0.393000													87	70					0	0	1	0	0
FBXO43	286151	broad.mit.edu	37	8	101153891	101153891	+	Silent	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:101153891A>G	uc003yjd.2	-	2	1304	c.591T>C	c.(589-591)TTT>TTC	p.F197F	FBXO43_uc003yje.2_Silent_p.F163F|FBXO43_uc010mbp.1_Silent_p.F197F	NM_001029860	NP_001025031	Q4G163	FBX43_HUMAN	F-box protein 43 isoform b	197					meiosis		zinc ion binding			kidney(1)|skin(1)	2	all_cancers(14;0.000139)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000274)|all_lung(17;0.000798)		Epithelial(11;1.17e-09)|all cancers(13;1.34e-07)|OV - Ovarian serous cystadenocarcinoma(57;3.82e-05)|STAD - Stomach adenocarcinoma(118;0.0957)			TTGCCCTGGAAAAACCTGAAG	0.323000													52	28					0	0	1	0	0
TM7SF4	81501	broad.mit.edu	37	8	105367305	105367306	+	Missense_Mutation	DNP	CA	GG	GG			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:105367305_105367306CA>GG	uc003ylx.1	+	3	1279_1280	c.1230_1231CA>GG	c.(1228-1233)CCCAGC>CCGGGC	p.S411G		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	411	Cytoplasmic.				osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CTTTCTACCCCAGCGTGGAGAG	0.450000													91	113					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110477210	110477210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:110477210G>A	uc003yne.2	+	49	8253	c.8149G>A	c.(8149-8151)GGA>AGA	p.G2717R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2717	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGATGAACTGGGAATGGGGTC	0.473000										HNSCC(38;0.096)			68	212					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113563001	113563001	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:113563001G>A	uc003ynu.2	-	27	4622	c.4463C>T	c.(4462-4464)TCT>TTT	p.S1488F	CSMD3_uc003yns.2_Missense_Mutation_p.S760F|CSMD3_uc003ynt.2_Missense_Mutation_p.S1448F|CSMD3_uc011lhx.1_Missense_Mutation_p.S1384F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1488	Extracellular (Potential).|CUB 8.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGGAATAAGAGATCCACTAAT	0.373000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			35	104					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	134125787	134125787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:134125787C>T	uc003ytw.2	+	44	7735	c.7694C>T	c.(7693-7695)TCT>TTT	p.S2565F	TG_uc010mdw.2_Missense_Mutation_p.S1324F|TG_uc011ljb.1_Missense_Mutation_p.S934F|TG_uc011ljc.1_Missense_Mutation_p.S698F	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2565					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TGGTATTACTCTCTGGAGCAC	0.562000													56	43					0	0	1	0	0
KCNK9	51305	broad.mit.edu	37	8	140630564	140630564	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:140630564G>A	uc003yvf.1	-	2	1126	c.1062C>T	c.(1060-1062)ATC>ATT	p.I354I	KCNK9_uc003yvg.1_Silent_p.I354I|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	354	Cytoplasmic (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			ACCCAGGAGAGATGGAGCTAA	0.502000													174	128					0	0	1	0	0
FLJ43860	389690	broad.mit.edu	37	8	142517231	142517231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:142517231C>T	uc003ywi.2	-	1	100	c.19G>A	c.(19-21)GAA>AAA	p.E7K		NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	7							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			TATGGCCTTTCAGAACACTGC	0.642000													7	67					0	0	1	0	0
DOCK8	81704	broad.mit.edu	37	9	339064	339064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:339064C>T	uc003zgf.2	+	13	1593	c.1481C>T	c.(1480-1482)TCA>TTA	p.S494L	DOCK8_uc011lls.1_Missense_Mutation_p.S494L|DOCK8_uc010mgu.2_5'UTR|DOCK8_uc010mgv.2_Missense_Mutation_p.S426L|DOCK8_uc003zgg.2_Missense_Mutation_p.S426L|DOCK8_uc003zgh.2_RNA	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	494	DHR-1.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		TACAAAAGATCATCATCCTTA	0.398000													28	13					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8465627	8465627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:8465627C>T	uc003zkk.2	-	31	4264	c.3553G>A	c.(3553-3555)GAA>AAA	p.E1185K	PTPRD_uc003zkp.2_Missense_Mutation_p.E774K|PTPRD_uc003zkq.2_Missense_Mutation_p.E774K|PTPRD_uc003zkr.2_Missense_Mutation_p.E769K|PTPRD_uc003zks.2_Missense_Mutation_p.E764K|PTPRD_uc003zkl.2_Missense_Mutation_p.E1176K|PTPRD_uc003zkm.2_Missense_Mutation_p.E1172K|PTPRD_uc003zkn.2_Missense_Mutation_p.E774K|PTPRD_uc003zko.2_Missense_Mutation_p.E771K	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1185	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AATTCAACTTCTCTCCCATAA	0.418000										TSP Lung(15;0.13)			45	17					0	0	1	0	0
AQP7	364	broad.mit.edu	37	9	33386084	33386084	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:33386084G>A	uc003zst.2	-	6	688	c.516C>T	c.(514-516)TTC>TTT	p.F172F	SUGT1P1_uc010mjq.1_Intron|AQP7_uc003zsu.1_Silent_p.F115F|AQP7_uc010mjs.2_Silent_p.F80F|AQP7_uc010mjt.2_Silent_p.F80F|AQP7_uc011lnx.1_Silent_p.F172F|AQP7_uc011lny.1_Silent_p.F171F|AQP7_uc003zss.3_Silent_p.F80F|AQP7_uc011lnz.1_Silent_p.F80F|AQP7_uc011loa.1_Intron	NM_001170	NP_001161	O14520	AQP7_HUMAN	aquaporin 7	172	Helical; (Potential).				excretion|generation of precursor metabolites and energy	cell-cell junction|cytoplasm|integral to plasma membrane	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.191)		CCTCATTCAGGAAGCCCCGCC	0.587000													3	61					0	0	1	0	0
C9orf131	138724	broad.mit.edu	37	9	35044893	35044894	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:35044893_35044894GG>AA	uc003zvw.2	+	2	2296_2297	c.2267_2268GG>AA	c.(2266-2268)GGG>GAA	p.G756E	C9orf131_uc003zvu.2_Missense_Mutation_p.G708E|C9orf131_uc003zvv.2_Missense_Mutation_p.G683E|C9orf131_uc003zvx.2_Missense_Mutation_p.G721E	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	756											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			ACGTGCCCAGGGGTTAAGGCAG	0.579000													57	29					0	0	1	0	0
KIAA1539	80256	broad.mit.edu	37	9	35107559	35107559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:35107559C>T	uc003zwl.2	-	3	1038	c.713G>A	c.(712-714)TGC>TAC	p.C238Y	KIAA1539_uc003zwm.2_Missense_Mutation_p.C238Y|KIAA1539_uc003zwn.2_5'UTR|KIAA1539_uc003zwo.2_Missense_Mutation_p.C238Y|KIAA1539_uc003zwp.1_Missense_Mutation_p.C238Y|KIAA1539_uc010mkk.1_RNA	NM_025182	NP_079458	Q7L5A3	K1539_HUMAN	hypothetical protein LOC80256	238						nucleus				ovary(2)	2	all_epithelial(49;0.217)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			CTTGGTGGGGCAGGGGCCTGG	0.697000													7	59					0	0	1	0	0
PCSK5	5125	broad.mit.edu	37	9	78808172	78808172	+	Silent	SNP	G	A	A	rs144739137		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:78808172G>A	uc004ajz.2	+	21	3184	c.2646G>A	c.(2644-2646)GCG>GCA	p.A882A	PCSK5_uc004aka.2_RNA|PCSK5_uc004akb.2_Silent_p.A156A	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	882	PLAC.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						AGTCCTGGGCGGAAGGAGGCT	0.463000													26	10					0	0	1	0	0
GKAP1	80318	broad.mit.edu	37	9	86357478	86357478	+	Silent	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:86357478T>C	uc004amy.2	-	11	1438	c.942A>G	c.(940-942)GAA>GAG	p.E314E	GKAP1_uc004amz.2_Silent_p.E263E	NM_025211	NP_079487	Q5VSY0	GKAP1_HUMAN	G kinase anchoring protein 1 isoform a	314	Potential.				signal transduction	Golgi apparatus					0						TACTTTGTGATTCATCAACTT	0.343000													74	16					0	0	1	0	0
C9orf30	91283	broad.mit.edu	37	9	103213197	103213197	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:103213197C>T	uc004baw.2	+	3	844	c.777C>T	c.(775-777)ACC>ACT	p.T259T	TMEFF1_uc004bay.1_Intron|C9orf30_uc004bax.2_RNA	NM_080655	NP_542386	Q96H12	CI030_HUMAN	hypothetical protein LOC91283	259										ovary(1)	1		Acute lymphoblastic leukemia(62;0.0527)				AAACTTTTACCAAGGAATGGC	0.418000													33	12					0	0	1	0	0
OR13C3	138803	broad.mit.edu	37	9	107298474	107298474	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:107298474G>A	uc004bcb.1	-	1	621	c.621C>T	c.(619-621)TTC>TTT	p.F207F		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	207	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						TTTCACATGCGAAATGATTGA	0.428000													106	31					0	0	1	0	0
IKBKAP	8518	broad.mit.edu	37	9	111640356	111640356	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:111640356G>A	uc004bdm.3	-	35	4294	c.3774C>T	c.(3772-3774)GCC>GCT	p.A1258A	IKBKAP_uc004bdl.2_Silent_p.A909A|IKBKAP_uc011lwc.1_Silent_p.A1144A|IKBKAP_uc010mtq.2_Silent_p.A909A|IKBKAP_uc004bdk.2_Silent_p.A262A|IKBKAP_uc010mtp.2_RNA	NM_003640	NP_003631	O95163	ELP1_HUMAN	inhibitor of kappa light polypeptide gene	1258					immune response|protein complex assembly|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding|signal transducer activity			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	7						TATCTTCAAAGGCCTTCTGTA	0.398000													53	11					0	0	1	0	0
C5	727	broad.mit.edu	37	9	123742432	123742432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:123742432G>A	uc004bkv.2	-	28	3617	c.3587C>T	c.(3586-3588)TCC>TTC	p.S1196F		NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	1196					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	ATCTCCCAGGGAAAGAGCATA	0.383000													62	15					0	0	1	0	0
OR1J2	26740	broad.mit.edu	37	9	125273445	125273445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:125273445G>A	uc004bmj.1	+	4	1220	c.365G>A	c.(364-366)CGA>CAA	p.R122Q	OR1J2_uc011lyv.1_Missense_Mutation_p.R122Q	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R122L(1)		skin(3)|pancreas(1)|breast(1)	5						GCATATGACCGATATGTTGCC	0.408000													34	11					0	0	1	0	0
OR1L8	138881	broad.mit.edu	37	9	125330095	125330095	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:125330095C>T	uc004bmp.1	-	1	662	c.662G>A	c.(661-663)CGA>CAA	p.R221Q		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						AGTGAGGATTCGTATATAAGA	0.428000													12	7					0	0	1	0	0
C9orf106	414318	broad.mit.edu	37	9	132084184	132084184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:132084184C>T	uc004bxs.2	+	2	145	c.92C>T	c.(91-93)CCC>CTC	p.P31L		NM_001012715	NP_001012733	Q8NAJ2	CI106_HUMAN	hypothetical protein LOC414318	31											0		Ovarian(14;0.00556)|Medulloblastoma(224;0.235)				cttttctctcccaggcccttg	0.144000													8	3					0	0	1	0	0
SLC2A6	11182	broad.mit.edu	37	9	136344106	136344106	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:136344106C>T	uc004cee.2	-	1	171	c.76G>A	c.(76-78)GAC>AAC	p.D26N	SLC2A6_uc004cef.2_Missense_Mutation_p.D26N|SLC2A6_uc004ceg.2_Missense_Mutation_p.D26N|SLC2A6_uc011mdj.1_Missense_Mutation_p.D26N	NM_017585	NP_060055	Q9UGQ3	GTR6_HUMAN	solute carrier family 2 (facilitated glucose	26	Cytoplasmic (Potential).					integral to membrane|plasma membrane	D-glucose transmembrane transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;8.47e-08)|Epithelial(140;9.37e-07)|all cancers(34;1.03e-05)		CGCGCCCTGTCCCCTGGCGAC	0.761000													13	1					0	0	1	0	0
NDOR1	27158	broad.mit.edu	37	9	140108750	140108750	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:140108750C>T	uc004clw.2	+	6	718	c.607C>T	c.(607-609)CCG>TCG	p.P203S	NDOR1_uc004clx.2_Missense_Mutation_p.P203S|NDOR1_uc011mes.1_Missense_Mutation_p.P203S|NDOR1_uc004cly.2_Missense_Mutation_p.P169S	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	203					cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		TCAGGAGCCCCCGTCAGAGTC	0.622000													50	11					0	0	1	0	0
ZBED1	9189	broad.mit.edu	37	X	2408599	2408599	+	Silent	SNP	G	A	A	rs150600366		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:2408599G>A	uc004cqg.2	-	2	363	c.162C>T	c.(160-162)ATC>ATT	p.I54I	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Silent_p.I54I	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	54	BED-type.					nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CGGAGTAGGCGATCTGGGCCA	0.557000													79	124					0	0	1	0	0
ARSH	347527	broad.mit.edu	37	X	2936599	2936599	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:2936599C>T	uc011mhj.1	+	5	789	c.789C>T	c.(787-789)CTC>CTT	p.L263L		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	263						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				CTTTTCTCCTCTTTTTTTCCT	0.393000													52	81					0	0	1	0	0
ARSF	416	broad.mit.edu	37	X	3019250	3019250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:3019250G>A	uc004cre.1	+	8	1311	c.1090G>A	c.(1090-1092)GGA>AGA	p.G364R	ARSF_uc004crf.1_Missense_Mutation_p.G364R	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	364						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TGGATGGAATGGAATATACAA	0.438000													80	146					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3235416	3235416	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:3235416G>A	uc004crg.3	-	6	6463	c.6306C>T	c.(6304-6306)TTC>TTT	p.F2102F		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2102	Ig-like C2-type 5.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCCCGTTGGGGAAAACAAACA	0.682000													14	13					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3241488	3241488	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:3241488G>A	uc004crg.3	-	5	2395	c.2238C>T	c.(2236-2238)CTC>CTT	p.L746L		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	746						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				AATGCTTCCAGAGTTTCAGCT	0.428000													38	53					0	0	1	0	0
STS	412	broad.mit.edu	37	X	7177764	7177764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:7177764G>A	uc004cry.3	+	5	1017	c.772G>A	c.(772-774)GAC>AAC	p.D258N		NM_000351	NP_000342	P08842	STS_HUMAN	steryl-sulfatase precursor	258	Lumenal.				female pregnancy|steroid catabolic process	endoplasmic reticulum membrane|endosome|Golgi apparatus|integral to membrane|lysosome|microsome|plasma membrane	metal ion binding|steryl-sulfatase activity			central_nervous_system(1)	1		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)			Estrone(DB00655)	CATGTCCTATGACAATCTCAC	0.507000									Ichthyosis				81	212					0	0	1	0	0
EGFL6	25975	broad.mit.edu	37	X	13607758	13607758	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:13607758G>A	uc004cvi.2	+	2	398	c.158G>A	c.(157-159)TGG>TAG	p.W53*	EGFL6_uc004cvj.2_Nonsense_Mutation_p.W53*|EGFL6_uc011mik.1_5'UTR	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	53					cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						TGCTACGGCTGGAGAAGAAAC	0.483000													85	90					0	0	1	0	0
NHS	4810	broad.mit.edu	37	X	17744466	17744466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:17744466G>A	uc004cxx.2	+	6	2515	c.2177G>A	c.(2176-2178)AGC>AAC	p.S726N	NHS_uc011mix.1_Missense_Mutation_p.S747N|NHS_uc004cxy.2_Missense_Mutation_p.S570N|NHS_uc004cxz.2_Missense_Mutation_p.S549N|NHS_uc004cya.2_Missense_Mutation_p.S449N	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	726						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					AAGGCAGACAGCCTGGGCTGC	0.512000													71	106					0	0	1	0	0
RAI2	10742	broad.mit.edu	37	X	17819512	17819512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:17819512G>A	uc004cyf.2	-	3	1189	c.619C>T	c.(619-621)CCT>TCT	p.P207S	RAI2_uc004cyg.2_Missense_Mutation_p.P207S|RAI2_uc010nfa.2_Missense_Mutation_p.P207S|RAI2_uc004cyh.3_Missense_Mutation_p.P207S|RAI2_uc011miy.1_Missense_Mutation_p.P157S	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	207	Pro-rich.				embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					GCATAGCCAGGAGGAGGCTGA	0.632000													30	41					0	0	1	0	0
GPR64	10149	broad.mit.edu	37	X	19014270	19014270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:19014270C>T	uc004cyx.2	-	27	2779	c.2615G>A	c.(2614-2616)GGA>GAA	p.G872E	GPR64_uc004cyy.2_Missense_Mutation_p.G869E|GPR64_uc004cyz.2_Missense_Mutation_p.G858E|GPR64_uc004czb.2_Missense_Mutation_p.G872E|GPR64_uc004czc.2_Missense_Mutation_p.G856E|GPR64_uc004czd.2_Missense_Mutation_p.G848E|GPR64_uc004cze.2_Missense_Mutation_p.G842E|GPR64_uc004czf.2_Missense_Mutation_p.G834E|GPR64_uc004cza.2_Missense_Mutation_p.G850E|GPR64_uc004cyw.2_Missense_Mutation_p.G856E|GPR64_uc010nfj.2_Missense_Mutation_p.G753E	NM_001079858	NP_001073327	Q8IZP9	GPR64_HUMAN	G protein-coupled receptor 64 isoform 1	872	Helical; Name=7; (Potential).				neuropeptide signaling pathway|spermatogenesis	cytoplasm|integral to plasma membrane	G-protein coupled receptor activity				0	Hepatocellular(33;0.183)					TATGAAAAATCCTAAGGAGGG	0.368000													58	66					0	0	1	0	0
RPS6KA3	6197	broad.mit.edu	37	X	20206023	20206023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:20206023C>T	uc004czu.2	-	9	697	c.697G>A	c.(697-699)GAG>AAG	p.E233K	RPS6KA3_uc011mjk.1_Missense_Mutation_p.E204K|RPS6KA3_uc004czv.2_Missense_Mutation_p.E221K|RPS6KA3_uc011mjl.1_Missense_Mutation_p.E205K|RPS6KA3_uc011mjm.1_Missense_Mutation_p.E205K	NM_004586	NP_004577	P51812	KS6A3_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	233	Protein kinase 1.				axon guidance|central nervous system development|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|skeletal system development|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(4)|stomach(1)|ovary(1)|lung(1)|breast(1)	8						GCCATATACTCCACAGTTCCA	0.373000													71	99					0	0	1	0	0
MED14	9282	broad.mit.edu	37	X	40540121	40540121	+	Silent	SNP	A	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:40540121A>T	uc004dex.3	-	20	2639	c.2499T>A	c.(2497-2499)ATT>ATA	p.I833I		NM_004229	NP_004220	O60244	MED14_HUMAN	mediator complex subunit 14	833					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			breast(2)|kidney(1)|skin(1)	4						TTCCCAAAGAAATGTGGAATT	0.358000													32	47					0	0	1	0	0
USP9X	8239	broad.mit.edu	37	X	41029487	41029487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:41029487C>T	uc004dfb.2	+	19	3509	c.2876C>T	c.(2875-2877)TCG>TTG	p.S959L	USP9X_uc004dfc.2_Missense_Mutation_p.S959L	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	959					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						AAAGATAAATCGGTATGTATG	0.259000													21	24					0	0	1	0	0
ARAF	369	broad.mit.edu	37	X	47426121	47426121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:47426121C>T	uc011mlq.1	+	7	774	c.641C>T	c.(640-642)TCC>TTC	p.S214F	ARAF_uc011mln.1_Intron|ARAF_uc011mlo.1_Missense_Mutation_p.S80F|ARAF_uc011mlp.1_Missense_Mutation_p.S214F|ARAF_uc004dic.1_5'UTR	NM_001654	NP_001645	P10398	ARAF_HUMAN	v-raf murine sarcoma 3611 viral oncogene	214					intracellular signal transduction|negative regulation of apoptosis|positive regulation of peptidyl-serine phosphorylation		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity			large_intestine(3)|lung(2)|ovary(1)|skin(1)	7					Adenosine triphosphate(DB00171)	CGCTCCACGTCCACTCCCAAC	0.662000													40	48					0	0	1	0	0
PIM2	11040	broad.mit.edu	37	X	48771524	48771524	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:48771524G>A	uc004dls.2	-	6	1122	c.820C>T	c.(820-822)CGA>TGA	p.R274*	SLC35A2_uc004dlo.1_5'Flank|SLC35A2_uc011mml.1_5'Flank|SLC35A2_uc004dlp.1_5'Flank|SLC35A2_uc011mmm.1_5'Flank|SLC35A2_uc011mmn.1_5'Flank|SLC35A2_uc004dlq.2_5'Flank|SLC35A2_uc011mmo.1_5'Flank	NM_006875	NP_006866	Q9P1W9	PIM2_HUMAN	serine/threonine protein kinase pim-2	274	Protein kinase.				anti-apoptosis|cell proliferation|male meiosis|positive regulation of autophagy|positive regulation of I-kappaB kinase/NF-kappaB cascade|response to virus		ATP binding|protein serine/threonine kinase activity	p.R274fs*>38(1)		lung(3)|stomach(1)	4						AGTGAGGGTCGGGAAGAAGGT	0.602000													12	19					0	0	1	0	0
CCDC22	28952	broad.mit.edu	37	X	49099919	49099919	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:49099919C>T	uc004dnd.1	+	6	861	c.705C>T	c.(703-705)CTC>CTT	p.L235L	CCDC22_uc011mna.1_Silent_p.L235L|CCDC22_uc004dnc.1_RNA	NM_014008	NP_054727	O60826	CCD22_HUMAN	coiled-coil domain containing 22	235										central_nervous_system(1)	1						CATCCCGCCTCCCACCCCAGG	0.677000													14	14					0	0	1	0	0
CCNB3	85417	broad.mit.edu	37	X	50054000	50054000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:50054000C>T	uc004dox.3	+	6	3129	c.2831C>T	c.(2830-2832)TCC>TTC	p.S944F	CCNB3_uc004doy.2_Missense_Mutation_p.S944F|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	944					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					AAGGAGTTGTCCTTCAAGGAG	0.463000													72	103					0	0	1	0	0
DGKK	139189	broad.mit.edu	37	X	50146156	50146156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:50146156C>T	uc010njr.1	-	7	1271	c.1211G>A	c.(1210-1212)GGA>GAA	p.G404E		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	404	Phorbol-ester/DAG-type 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					AGGCATGTTTCCTTCTACCCA	0.468000													12	17					0	0	1	0	0
SHROOM4	57477	broad.mit.edu	37	X	50381252	50381252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:50381252C>T	uc004dpe.2	-	3	352	c.326G>A	c.(325-327)GGA>GAA	p.G109E	SHROOM4_uc004dpd.3_RNA|SHROOM4_uc004dpf.1_5'UTR	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	109					actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					TTCAGGGCATCCCTCCAGCAG	0.582000													25	32					0	0	1	0	0
GSPT2	23708	broad.mit.edu	37	X	51487844	51487844	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:51487844G>A	uc004dpl.2	+	1	1348	c.1122G>A	c.(1120-1122)TTG>TTA	p.L374L		NM_018094	NP_060564	Q8IYD1	ERF3B_HUMAN	peptide chain release factor 3	374					cell cycle|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|translational termination	cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)	1	Ovarian(276;0.236)					TGCCCTTTTTGAAAAAAGTAG	0.378000													27	33					0	0	1	0	0
GNL3L	54552	broad.mit.edu	37	X	54569418	54569418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:54569418C>T	uc004dth.1	+	6	476	c.337C>T	c.(337-339)CCT>TCT	p.P113S	GNL3L_uc004dti.2_RNA	NM_019067	NP_061940	Q9NVN8	GNL3L_HUMAN	guanine nucleotide binding protein-like 3	113					ribosome biogenesis	nucleolus	GTP binding			ovary(1)	1						AAATATGTTTCCTCAGCTGGA	0.488000													33	36					0	0	1	0	0
PFKFB1	5207	broad.mit.edu	37	X	54984787	54984787	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:54984787G>A	uc004dty.1	-	6	539	c.468C>T	c.(466-468)TTC>TTT	p.F156F	PFKFB1_uc010nkd.1_Intron|PFKFB1_uc011mol.1_Silent_p.F91F	NM_002625	NP_002616	P16118	F261_HUMAN	6-phosphofructo-2-kinase/fructose-2,	156	6-phosphofructo-2-kinase.				energy reserve metabolic process|fructose 2,6-bisphosphate metabolic process|gluconeogenesis|glycolysis|intracellular protein kinase cascade	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(1)	1						TGGACTCAATGAAAAACACCT	0.313000													38	53					0	0	1	0	0
SPIN3	169981	broad.mit.edu	37	X	57021158	57021158	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:57021158G>A	uc010nkj.2	-	2	509	c.223C>T	c.(223-225)CAG>TAG	p.Q75*	SPIN3_uc004duu.3_RNA|SPIN3_uc004duw.3_RNA|SPIN3_uc004duv.3_RNA|SPIN3_uc004dux.1_Nonsense_Mutation_p.Q75*	NM_001010862	NP_001010862	Q5JUX0	SPIN3_HUMAN	spindlin family, member 3	75					gamete generation					ovary(1)|central_nervous_system(1)	2						ACAGGTACCTGATCCAGAACG	0.458000													140	188					0	0	1	0	0
NONO	4841	broad.mit.edu	37	X	70514088	70514088	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:70514088C>T	uc004dzo.2	+	6	1070	c.360C>T	c.(358-360)ACC>ACT	p.T120T	BCYRN1_uc011mpt.1_Intron|NONO_uc004dzn.2_Silent_p.T120T|NONO_uc004dzp.2_Silent_p.T120T|NONO_uc011mpv.1_Silent_p.T31T|NONO_uc004dzq.2_5'UTR	NM_001145408	NP_001138880	Q15233	NONO_HUMAN	non-POU domain containing, octamer-binding	120	DBHS.|RRM 1.				DNA recombination|DNA repair|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nuclear matrix|paraspeckles	DNA binding|identical protein binding|nucleotide binding|RNA binding		NONO/TFE3(2)	ovary(2)|kidney(2)	4	Renal(35;0.156)					AAACCCGAACCCTAGCGGAGA	0.473000			T	TFE3	papillary renal cancer								42	72					0	0	1	0	0
OGT	8473	broad.mit.edu	37	X	70782757	70782757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:70782757G>A	uc004eaa.1	+	16	2255	c.2038G>A	c.(2038-2040)GAT>AAT	p.D680N	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Missense_Mutation_p.D670N|OGT_uc004eac.2_Missense_Mutation_p.D541N|OGT_uc004ead.2_Missense_Mutation_p.D299N	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	680					cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					TATTATCACTGATCAGGAAAC	0.398000													81	142					0	0	1	0	0
PHKA1	5255	broad.mit.edu	37	X	71895921	71895921	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:71895921T>G	uc004eax.3	-	6	918	c.617A>C	c.(616-618)AAG>ACG	p.K206T	PHKA1_uc004eay.3_Missense_Mutation_p.K206T|PHKA1_uc011mqi.1_Missense_Mutation_p.K206T	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	206					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					GAAAATTACCTTTGCCATTCC	0.408000													59	86					0	0	1	0	0
RLIM	51132	broad.mit.edu	37	X	73811621	73811621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:73811621C>T	uc004ebu.2	-	5	1819	c.1529G>A	c.(1528-1530)CGA>CAA	p.R510Q	RLIM_uc004ebw.2_Missense_Mutation_p.R510Q	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting	510					random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TCGACCCTCTCGCCTGGCACC	0.428000													33	34					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960001	73960001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:73960001C>T	uc004eby.2	-	3	5008	c.4391G>A	c.(4390-4392)GGA>GAA	p.G1464E		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1464					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CATGTGCTTTCCCTTACATTT	0.453000													74	90					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962589	73962589	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:73962589G>A	uc004eby.2	-	3	2420	c.1803C>T	c.(1801-1803)TCC>TCT	p.S601S		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	601					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GTGTCTTGATGGAGTCCGTGT	0.443000													16	19					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963783	73963783	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:73963783C>T	uc004eby.2	-	3	1226	c.609G>A	c.(607-609)CAG>CAA	p.Q203Q		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	203					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						AGCCTAGGAGCTGGTCTGAGA	0.448000													41	51					0	0	1	0	0
ATP7A	538	broad.mit.edu	37	X	77298181	77298181	+	Silent	SNP	A	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:77298181A>C	uc004ecx.3	+	20	4060	c.3900A>C	c.(3898-3900)GGA>GGC	p.G1300G		NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	1300	Cytoplasmic (Potential).		G -> E (in MNKD).		ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						CAATGGTGGGAGATGGAATCA	0.473000													157	251					0	0	1	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77912712	77912712	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:77912712C>T	uc004edc.1	-	2	1502	c.1206G>A	c.(1204-1206)GGG>GGA	p.G402G		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	402							nucleic acid binding|zinc ion binding			ovary(1)	1						AGGAACTTTTCCCTAATGGAT	0.502000													62	98					0	0	1	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77912768	77912768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:77912768C>T	uc004edc.1	-	2	1446	c.1150G>A	c.(1150-1152)GAT>AAT	p.D384N		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	384							nucleic acid binding|zinc ion binding			ovary(1)	1						GTGATGAGATCAGATAGGTTG	0.498000													82	107					0	0	1	0	0
APOOL	139322	broad.mit.edu	37	X	84306435	84306435	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:84306435T>C	uc004eem.2	+	3	175	c.161T>C	c.(160-162)GTT>GCT	p.V54A	APOOL_uc010nmp.2_Intron	NM_198450	NP_940852	Q6UXV4	APOOL_HUMAN	apolipoprotein O-like precursor	54						extracellular region					0						TCTAAATATGTTGAAGAGCAG	0.443000													77	106					0	0	1	0	0
CENPI	2491	broad.mit.edu	37	X	100402952	100402952	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:100402952C>T	uc004egx.2	+	19	2166	c.1896C>T	c.(1894-1896)TTC>TTT	p.F632F	CENPI_uc011mrg.1_Silent_p.F632F	NM_006733	NP_006724	Q92674	CENPI_HUMAN	centromere protein I	632					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	cytosol|kinetochore|nucleoplasm	protein binding			skin(1)	1						AGTTCAATTTCAGCAGCAAGA	0.363000													53	93					0	0	1	0	0
TAF7L	54457	broad.mit.edu	37	X	100547999	100547999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:100547999G>A	uc004ehb.2	-	1	47	c.35C>T	c.(34-36)TCA>TTA	p.S12L	TAF7L_uc004ehc.1_5'Flank	NM_024885	NP_079161	Q5H9L4	TAF7L_HUMAN	TATA box binding protein-associated factor, RNA	12					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription initiation from RNA polymerase II promoter	cytoplasm|transcription factor TFIID complex	binding			breast(1)	1						ATCATTTTCTGAAGAAATGGG	0.498000													267	351					0	0	1	0	0
TMSB15B	286527	broad.mit.edu	37	X	103219191	103219191	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:103219191G>A	uc010noz.2	+	2	210	c.96G>A	c.(94-96)AAG>AAA	p.K32K	TMSB15B_uc004elo.3_RNA|TMSB15B_uc004elq.3_RNA	NM_194324	NP_919305	P0CG34	TB15A_HUMAN	thymosin beta15b	32					actin cytoskeleton organization|sequestering of actin monomers	cytoplasm|cytoskeleton	actin binding			skin(1)	1						TTCCCTCAAAGGAAAGTAAGT	0.338000													22	172					0	0	1	0	0
MUM1L1	139221	broad.mit.edu	37	X	105449808	105449808	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:105449808C>T	uc004emf.1	+	4	1032	c.383C>T	c.(382-384)TCA>TTA	p.S128L	MUM1L1_uc004emg.1_Missense_Mutation_p.S128L	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	128										ovary(2)|pancreas(1)|skin(1)	4						CAGTCCGATTCACCCCCTCAT	0.423000													31	43					0	0	1	0	0
MID2	11043	broad.mit.edu	37	X	107084267	107084268	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:107084267_107084268GA>AC	uc004enl.2	+	2	945_946	c.372_373GA>AC	c.(370-375)AGGACT>AGACCT	p.T125P	MID2_uc004enk.2_Missense_Mutation_p.T125P	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	125						centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						GCCGGGAAAGGACTTACAGGCC	0.530000													31	65					0	0	1	0	0
COL4A6	1288	broad.mit.edu	37	X	107418389	107418389	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:107418389T>A	uc004enw.3	-	30	2993	c.2890A>T	c.(2890-2892)AAC>TAC	p.N964Y	COL4A6_uc004env.3_Missense_Mutation_p.N963Y|COL4A6_uc011msn.1_Missense_Mutation_p.N963Y|COL4A6_uc010npk.2_Missense_Mutation_p.N963Y	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	964	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						AGCCAAAGGTTTGACATTGGA	0.542000									Alport_syndrome_with_Diffuse_Leiomyomatosis				181	223					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107811990	107811990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:107811990G>A	uc004enz.1	+	6	525	c.323G>A	c.(322-324)GGA>GAA	p.G108E	COL4A5_uc011mso.1_Missense_Mutation_p.G108E	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	108	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						TTTTCAAAGGGAATGCCAGGC	0.423000									Alport_syndrome_with_Diffuse_Leiomyomatosis				91	156					0	0	1	0	0
DOCK11	139818	broad.mit.edu	37	X	117815030	117815030	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:117815030C>T	uc004eqp.2	+	50	5744	c.5681C>T	c.(5680-5682)TCG>TTG	p.S1894L	DOCK11_uc004eqq.2_Missense_Mutation_p.S1673L	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1894	DHR-2.				blood coagulation	cytosol	GTP binding			ovary(3)	3						GCTTCAAACTCGTTTCCTTAC	0.299000													45	85					0	0	1	0	0
KIAA1210	57481	broad.mit.edu	37	X	118227657	118227657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:118227657C>T	uc004era.3	-	10	1456	c.1456G>A	c.(1456-1458)GAA>AAA	p.E486K		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	486										ovary(4)|skin(1)	5						AGCTTCTTTTCGTTGATTTCT	0.433000													30	49					0	0	1	0	0
ANKRD58	347454	broad.mit.edu	37	X	118892684	118892684	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:118892684G>A	uc010nql.2	+	1	109	c.54G>A	c.(52-54)CCG>CCA	p.P18P		NM_001105576	NP_001099046	A6NJG2	ANR58_HUMAN	ankyrin repeat domain 58	18											0						CTCTCGCGCCGACCTCGCAGA	0.741000													11	24					0	0	1	0	0
RPL39	6170	broad.mit.edu	37	X	118923891	118923891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:118923891C>T	uc004erx.1	-	2	154	c.87G>A	c.(85-87)ATG>ATA	p.M29I	SNORA69_uc004ery.1_5'Flank	NM_001000	NP_000991	P62891	RL39_HUMAN	ribosomal protein L39	29					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0						TTCCAGTTTTCATCCGAATCC	0.408000													42	82					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123515034	123515034	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:123515034C>T	uc004euj.2	-	31	7594	c.7530G>A	c.(7528-7530)GGG>GGA	p.G2510G	ODZ1_uc011muj.1_Silent_p.G2516G|ODZ1_uc010nqy.2_Silent_p.G2517G	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2510	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TTGGTTGCTTCCCTCCTTCAA	0.448000													102	149					0	0	1	0	0
SMARCA1	6594	broad.mit.edu	37	X	128641929	128641929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:128641929C>T	uc004eun.3	-	7	1068	c.955G>A	c.(955-957)GAA>AAA	p.E319K	SMARCA1_uc004eup.3_Missense_Mutation_p.E319K|SMARCA1_uc011muk.1_Missense_Mutation_p.E319K|SMARCA1_uc011mul.1_Missense_Mutation_p.E319K	NM_003069	NP_003060	P28370	SMCA1_HUMAN	SWI/SNF-related matrix-associated	319	Helicase ATP-binding.				ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			ovary(3)|skin(1)	4						TTAGATTTTTCATTCTTTATT	0.289000													23	36					0	0	1	0	0
SASH3	54440	broad.mit.edu	37	X	128922436	128922436	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:128922436C>T	uc011mun.1	+	3	365	c.183C>T	c.(181-183)ACC>ACT	p.T61T	SASH3_uc004euu.2_Silent_p.T61T|SASH3_uc011muo.1_5'UTR	NM_018990	NP_061863	O75995	SASH3_HUMAN	SAM and SH3 domain containing 3	61										ovary(2)|pancreas(1)	3						GTGTCCCCACCCCAGAAGATG	0.542000													48	56					0	0	1	0	0
ZNF280C	55609	broad.mit.edu	37	X	129370283	129370283	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:129370283A>G	uc004evm.2	-	8	830	c.676T>C	c.(676-678)TCA>CCA	p.S226P	ZNF280C_uc010nrf.1_Missense_Mutation_p.S226P	NM_017666	NP_060136	Q8ND82	Z280C_HUMAN	zinc finger protein 280C	226	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)	3						TATGGAGATGAGGTATTTGTA	0.318000													54	71					0	0	1	0	0
FAM45B	55855	broad.mit.edu	37	X	129629232	129629232	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:129629232T>A	uc010nrh.2	+	1	318	c.100T>A	c.(100-102)TCC>ACC	p.S34T	uc004evu.2_Intron	NM_207009	NP_996892			hypothetical protein LOC404636											skin(1)	1				all cancers(201;0.0293)		GTGTTATCCTTCCACGACAGC	0.498000													59	85					0	0	1	0	0
IGSF1	3547	broad.mit.edu	37	X	130415299	130415299	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:130415299C>T	uc004ewd.2	-	9	1777	c.1539G>A	c.(1537-1539)TGG>TGA	p.W513*	IGSF1_uc004ewe.3_Nonsense_Mutation_p.W502*|IGSF1_uc004ewf.2_Nonsense_Mutation_p.W493*	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	513	Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GAACGTAATTCCAGGTGAGAT	0.493000													184	224					0	0	1	0	0
GPC4	2239	broad.mit.edu	37	X	132440114	132440114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:132440114C>T	uc004exc.1	-	5	1158	c.946G>A	c.(946-948)GAT>AAT	p.D316N	GPC4_uc011mvg.1_Missense_Mutation_p.D246N	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	316					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					ATCTTCACATCGATGGGATCC	0.453000													115	162					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135405474	135405474	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:135405474G>A	uc004ezu.1	+	5	899	c.608G>A	c.(607-609)GGA>GAA	p.G203E	GPR112_uc010nsb.1_Intron	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	203	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TGTTTAGATGGAAATATAGTT	0.423000													81	128					0	0	1	0	0
ZIC3	7547	broad.mit.edu	37	X	136649781	136649781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:136649781G>A	uc004fak.2	+	1	1436	c.931G>A	c.(931-933)GCG>ACG	p.A311T		NM_003413	NP_003404	O60481	ZIC3_HUMAN	zinc finger protein of the cerebellum 3	311	Nuclear localization signal.|C2H2-type 2; atypical.				cell differentiation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GTCTTTCAAGGCGAAGTACAA	0.607000													106	176					0	0	1	0	0
ZIC3	7547	broad.mit.edu	37	X	136649896	136649896	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:136649896A>G	uc004fak.2	+	1	1551	c.1046A>G	c.(1045-1047)AAG>AGG	p.K349R		NM_003413	NP_003404	O60481	ZIC3_HUMAN	zinc finger protein of the cerebellum 3	349	C2H2-type 3.|Nuclear localization signal.			K->A: Increases its cytoplasmic localization. Does not interacts with KPNA1 and KPNA6 and increases strongly its cytoplasmic localization; when associated with A-320; A-337; A-341; A- 346 and A-350.	cell differentiation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AAGATCCACAAGAGGACCCAC	0.617000													90	114					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996488	140996488	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:140996488C>T	uc004fbt.2	+	4	3584	c.3298C>T	c.(3298-3300)CCA>TCA	p.P1100S	MAGEC1_uc010nsl.1_Missense_Mutation_p.P167S	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1100	MAGE.						protein binding	p.P1100P(1)		ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TATTACCTTTCCATCCTCTTA	0.448000										HNSCC(15;0.026)			117	167					0	0	1	0	0
AFF2	2334	broad.mit.edu	37	X	148037355	148037355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:148037355G>A	uc004fcp.2	+	11	2259	c.1780G>A	c.(1780-1782)GAG>AAG	p.E594K	AFF2_uc004fcq.2_Missense_Mutation_p.E584K|AFF2_uc004fcr.2_Missense_Mutation_p.E555K|AFF2_uc011mxb.1_Missense_Mutation_p.E559K|AFF2_uc004fcs.2_Missense_Mutation_p.E561K|AFF2_uc011mxc.1_Missense_Mutation_p.E235K	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	594					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					TCTCATTAGGGAGAAAGCCCG	0.473000													96	124					0	0	1	0	0
HMGB3	3149	broad.mit.edu	37	X	150156315	150156315	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:150156315G>A	uc004fep.2	+	5	623	c.531G>A	c.(529-531)CGG>CGA	p.R177R	HMGB3_uc004feq.2_3'UTR|HMGB3_uc004fer.2_Silent_p.R177R	NM_005342	NP_005333	O15347	HMGB3_HUMAN	high-mobility group box 3	177					DNA recombination|multicellular organismal development	chromosome|nucleus	DNA bending activity|double-stranded DNA binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					AAGTTGCCCGGAAAAaggtgg	0.284000													48	57					0	0	1	0	0
GPR50	9248	broad.mit.edu	37	X	150349588	150349588	+	Silent	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:150349588C>T	uc010ntg.1	+	2	1668	c.1533C>T	c.(1531-1533)AGC>AGT	p.S511S		NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	511	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CAGCTACCAGCCATGCTGAGC	0.612000													199	160					0	0	1	0	0
CNGA2	1260	broad.mit.edu	37	X	150912097	150912097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:150912097G>A	uc004fey.1	+	7	1346	c.1122G>A	c.(1120-1122)ATG>ATA	p.M374I		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	374	Extracellular (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGGGCTCCATGATCTCCAACA	0.517000													75	125					0	0	1	0	0
MAGEA5	4104	broad.mit.edu	37	X	151283787	151283787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:151283787C>T	uc004ffj.2	-	3	431	c.226G>A	c.(226-228)GAT>AAT	p.D76N		NM_021049	NP_066387	P43359	MAGA5_HUMAN	melanoma antigen family A, 5	76	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					AGAGTGAAATCGATGGCAGTG	0.612000													70	108					0	0	1	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935766	151935766	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:151935766T>G	uc004fgp.2	-	3	610	c.401A>C	c.(400-402)GAA>GCA	p.E134A		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	134	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					CCCCAGCATTTCTGCCTTTGT	0.522000													99	163					0	0	1	0	0
MAGEA1	4100	broad.mit.edu	37	X	152482823	152482823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:152482823G>A	uc004fhf.2	-	3	408	c.188C>T	c.(187-189)GCC>GTC	p.A63V		NM_004988	NP_004979	P43355	MAGA1_HUMAN	melanoma antigen family A, 1	63						cytoplasm|plasma membrane		p.A63P(1)		central_nervous_system(7)|ovary(1)|lung(1)|breast(1)	10	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AGTGGGAAAGGCGGAGGCTCC	0.622000													86	131					0	0	1	0	0
PDZD4	57595	broad.mit.edu	37	X	153070217	153070217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:153070217C>T	uc004fiz.1	-	8	1151	c.901G>A	c.(901-903)GAA>AAA	p.E301K	PDZD4_uc004fiy.1_Missense_Mutation_p.E226K|PDZD4_uc004fix.2_Missense_Mutation_p.E205K|PDZD4_uc004fja.1_Missense_Mutation_p.E307K|PDZD4_uc011mze.1_Missense_Mutation_p.E192K	NM_032512	NP_115901	Q76G19	PDZD4_HUMAN	PDZ domain containing 4	301						cell cortex				breast(1)	1	all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CTCGGGGGTTCGTCCCCCAGC	0.657000													69	72					0	0	1	0	0
HCFC1	3054	broad.mit.edu	37	X	153222123	153222123	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:153222123G>A	uc004fjp.2	-	15	3116	c.2588C>T	c.(2587-2589)TCC>TTC	p.S863F		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	863	Interaction with ZBTB17.|Interaction with GABP2.				cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CTTGACGGCGGAGACGGTGAC	0.632000													90	129					0	0	1	0	0
SLC10A3	8273	broad.mit.edu	37	X	153716408	153716408	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:153716408G>C	uc004flq.2	-	3	1136	c.872C>G	c.(871-873)TCT>TGT	p.S291C	UBL4A_uc004flo.2_5'Flank|SLC10A3_uc004flr.2_Missense_Mutation_p.S262C|SLC10A3_uc004flp.2_Missense_Mutation_p.S291C	NM_001142392	NP_001135864	P09131	P3_HUMAN	solute carrier family 10, member 3 isoform 1	291	Helical; (Potential).				organic anion transport	integral to membrane	bile acid:sodium symporter activity			ovary(1)|skin(1)	2	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					AGCCACCGTAGAGAGGAAAGT	0.612000													6	119					0	0	1	0	0
FAM3A	60343	broad.mit.edu	37	X	153735629	153735629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:153735629C>T	uc004fls.1	-	8	779	c.502G>A	c.(502-504)GAG>AAG	p.E168K	FAM3A_uc004flt.1_Missense_Mutation_p.E182K|FAM3A_uc011mzp.1_Missense_Mutation_p.E151K|FAM3A_uc004flu.1_Missense_Mutation_p.E165K|FAM3A_uc011mzq.1_Missense_Mutation_p.E168K|FAM3A_uc004flw.1_Missense_Mutation_p.E168K	NM_021806	NP_068578	P98173	FAM3A_HUMAN	family 3, member A protein precursor	168						extracellular region				large_intestine(1)	1	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CTGCCCAGCTCACTGAAGAGC	0.597000													27	50					0	0	1	0	0
GAB3	139716	broad.mit.edu	37	X	153944425	153944425	+	Silent	SNP	G	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:153944425G>A	uc004fmj.1	-	2	300	c.252C>T	c.(250-252)TTC>TTT	p.F84F	GAB3_uc004fmk.1_Silent_p.F84F|GAB3_uc010nve.1_Silent_p.F84F|GAB3_uc004fml.1_5'UTR	NM_080612	NP_542179	Q8WWW8	GAB3_HUMAN	Gab3 protein isoform 2	84	PH.									ovary(1)	1	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CAATGAACACGAAATTATTCT	0.512000													153	232					0	0	1	0	0
MPP1	4354	broad.mit.edu	37	X	154018294	154018294	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:154018294C>T	uc004fmp.1	-	5	530	c.415G>A	c.(415-417)GAA>AAA	p.E139K	MPP1_uc010nvg.1_Missense_Mutation_p.E139K|MPP1_uc011mzv.1_Missense_Mutation_p.E109K|MPP1_uc004fmq.1_Missense_Mutation_p.E93K|MPP1_uc011mzw.1_Missense_Mutation_p.E122K|MPP1_uc010nvh.1_Intron	NM_002436	NP_002427	Q00013	EM55_HUMAN	palmitoylated membrane protein 1	139	PDZ.				regulation of neutrophil chemotaxis|signal transduction	integral to plasma membrane|membrane fraction|stereocilium	guanylate kinase activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CCTTTGGTTTCTTTCTATTAA	0.378000													18	35					0	0	1	0	0
NOTCH2	4853	broad.mit.edu	37	1	120612003	120612004	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:120612003_120612004delGG	uc001eik.2	-	1	273_274	c.17_18delCC	c.(16-18)CCCfs	p.P6fs	NOTCH2_uc001eil.2_Frame_Shift_Del_p.P6fs|NOTCH2_uc001eim.3_5'UTR	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	6					anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACAGCAGAGCGGGGCGCAGGGC	0.663			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				7	47	---	---	---	---					
BCL9	607	broad.mit.edu	37	1	147091501	147091501	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:147091501delC	uc001epq.2	+	8	2280	c.1540delC	c.(1540-1542)CCCfs	p.P514fs	BCL9_uc010ozr.1_Frame_Shift_Del_p.P440fs	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	514	Poly-Pro.|Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					GGTCCGAGGACCCCCCCCTCC	0.582			T	IGH@|IGL@	B-ALL								10	339	---	---	---	---					
CDC42BPA	8476	broad.mit.edu	37	1	227288840	227288857	+	In_Frame_Del	DEL	TCATAAAAGATACTTTTC	-	-	rs142697103		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr1:227288840_227288857delTCATAAAAGATACTTTTC	uc001hqr.2	-	15	3028_3045	c.2085_2102delGAAAAGTATCTTTTATGA	c.(2083-2103)AAGAAAAGTATCTTTTATGAA>AAA	p.KSIFYE696del	CDC42BPA_uc001hqq.2_5'UTR|CDC42BPA_uc001hqs.2_In_Frame_Del_p.KSIFYE615del|CDC42BPA_uc009xes.2_In_Frame_Del_p.KSIFYE696del|CDC42BPA_uc010pvs.1_In_Frame_Del_p.KSIFYE696del	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	696_701	Potential.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				TAATTCTTCTTCATAAAAGATACTTTTCTTTTCCAAAT	0.307													17	78	---	---	---	---					
ZMIZ1	57178	broad.mit.edu	37	10	81070787	81070789	+	In_Frame_Del	DEL	CTC	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr10:81070787_81070789delCTC	uc001kaf.2	+	24	3514_3516	c.2942_2944delCTC	c.(2941-2946)GCTCCT>GCT	p.P986del	ZMIZ1_uc001kag.2_In_Frame_Del_p.P862del|ZMIZ1_uc010qlq.1_Intron	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	986	Pro-rich.				transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CACAGTGGGGCTCCTCCTCCTCC	0.635													8	192	---	---	---	---					
NLRP6	171389	broad.mit.edu	37	11	281553	281555	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:281553_281555delGAG	uc010qvs.1	+	4	1819_1821	c.1819_1821delGAG	c.(1819-1821)GAGdel	p.E611del	NLRP6_uc010qvt.1_In_Frame_Del_p.E611del	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	611	Poly-Glu.					cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		CGAAGAGCCAGAGGAGGAGGAGG	0.670													9	287	---	---	---	---					
HRAS	3265	broad.mit.edu	37	11	533880	533881	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:533880_533881delGC	uc001lpv.2	-	3	363_364	c.175_176delGC	c.(175-177)GCCfs	p.A59fs	HRAS_uc010qvw.1_Frame_Shift_Del_p.A59fs|HRAS_uc010qvx.1_Frame_Shift_Del_p.A59fs|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334	P01112	RASH_HUMAN	v-Ha-ras Harvey rat sarcoma viral oncogene	59	GTP.			A->T: Loss of GTPase activity and creation of an autophosphorylation site.	activation of MAPKK activity|axon guidance|blood coagulation|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|Ras protein signal transduction|synaptic transmission	cytosol|Golgi membrane|plasma membrane	GTP binding|GTPase activity|protein C-terminus binding	p.A59T(1)		urinary_tract(174)|thyroid(155)|skin(126)|upper_aerodigestive_tract(112)|soft_tissue(37)|prostate(29)|salivary_gland(24)|cervix(23)|stomach(14)|pituitary(10)|lung(9)|haematopoietic_and_lymphoid_tissue(9)|breast(6)|testis(5)|endometrium(4)|bone(3)|large_intestine(2)|oesophagus(2)|penis(2)|kidney(1)|adrenal_gland(1)|thymus(1)	749		all_cancers(49;4.37e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Sulindac(DB00605)	CTCCTGGCCGGCGGTATCCAGG	0.604		6	Mis		infrequent sarcomas|rare other types	rhadomyosarcoma|ganglioneuroblastoma|bladder			Costello_syndrome	HNSCC(11;0.0054)			119	183	---	---	---	---					
LRP4	4038	broad.mit.edu	37	11	46921521	46921522	+	Frame_Shift_Ins	INS	-	G	G	rs35014453		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr11:46921521_46921522insG	uc001ndn.3	-	4	468_469	c.322_323insC	c.(322-324)CGGfs	p.R108fs	LRP4_uc009ylh.1_Frame_Shift_Ins_p.R59fs	NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	108	Extracellular (Potential).				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		CTCACACTCCCGGGGGGCTGTG	0.609													47	108	---	---	---	---					
RBM26	64062	broad.mit.edu	37	13	79918806	79918807	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr13:79918806_79918807insT	uc001vkz.2	-	15	2201_2202	c.2187_2188insA	c.(2185-2190)AAACAGfs	p.K729fs	RBM26_uc001vky.2_Frame_Shift_Ins_p.K700fs|RBM26_uc001vla.2_Frame_Shift_Ins_p.K703fs|RBM26_uc010tia.1_Frame_Shift_Ins_p.K84fs|RBM26_uc001vkx.2_Frame_Shift_Ins_p.K439fs	NM_022118	NP_071401	Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	727_728	Potential.				mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		GTACTTACCTGTTTTTTTTTCT	0.332													8	45	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106573362	106573364	+	RNA	DEL	ACC	-	-	rs2003432	by1000genomes	TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr14:106573362_106573364delACC	uc010tyt.1	-	1362		c.29161_29163delGGT								Parts of antibodies, mostly variable regions.												0						ATATGGTACTACCACTACTACTA	0.522													9	481	---	---	---	---					
DNAJA3	9093	broad.mit.edu	37	16	4475962	4475962	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:4475962delC	uc002cwk.2	+	1	105	c.80delC	c.(79-81)GCCfs	p.A27fs	DNAJA3_uc002cwl.2_Frame_Shift_Del_p.A27fs|DNAJA3_uc010uxk.1_5'UTR	NM_005147	NP_005138	Q96EY1	DNJA3_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 3	27					activation of caspase activity|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of cell proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein kinase activity|neuromuscular junction development|positive regulation of apoptosis|positive regulation of protein ubiquitination|protein folding|protein folding|protein stabilization|response to heat|response to interferon-gamma	cytosol|mitochondrial matrix|mitochondrial nucleoid|nucleus	ATP binding|heat shock protein binding|interferon-gamma receptor binding|metal ion binding|NF-kappaB binding|protein kinase binding			ovary(2)|breast(2)	4						GGTAGAGGGGCCCGGCCGCCC	0.721													5	7	---	---	---	---					
IL27	246778	broad.mit.edu	37	16	28511201	28511201	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr16:28511201delT	uc002dqc.2	-	5	526	c.503delA	c.(502-504)GAGfs	p.E168fs	uc010vct.1_Intron	NM_145659	NP_663634	Q8NEV9	IL27A_HUMAN	interleukin 27 precursor	168	Glu-rich.				inflammatory response|innate immune response|positive regulation of interferon-gamma biosynthetic process|regulation of defense response to virus|regulation of T cell proliferation|regulation of T-helper 1 cell differentiation	extracellular space	cytokine activity|interleukin-27 receptor binding				0						ctcctcttcctcctcctcctc	0.532													2	4	---	---	---	---					
KPNB1	3837	broad.mit.edu	37	17	45755530	45755530	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr17:45755530delA	uc002ilt.1	+	18	2558	c.2222delA	c.(2221-2223)CAGfs	p.Q741fs	KPNB1_uc010wkw.1_Frame_Shift_Del_p.Q596fs|KPNB1_uc010wkx.1_Frame_Shift_Del_p.Q525fs	NM_002265	NP_002256	Q14974	IMB1_HUMAN	karyopherin beta 1	741					DNA fragmentation involved in apoptotic nuclear change|NLS-bearing substrate import into nucleus|protein import into nucleus, translocation|ribosomal protein import into nucleus|viral genome transport in host cell|viral infectious cycle	cytosol|nuclear pore|nucleoplasm	nuclear localization sequence binding|protein domain specific binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						ACTCTTCAGCAGGCCTCCCAA	0.428													94	111	---	---	---	---					
ADNP2	22850	broad.mit.edu	37	18	77894260	77894261	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr18:77894260_77894261insC	uc002lnw.2	+	4	1419_1420	c.964_965insC	c.(964-966)TCCfs	p.S322fs		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	322	Pro-rich.				cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		CCTCACTCATTCCCCCCCTGCT	0.644													7	180	---	---	---	---					
NWD1	284434	broad.mit.edu	37	19	16908642	16908642	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:16908642delT	uc002neu.3	+	16	3826	c.3404delT	c.(3403-3405)GTTfs	p.V1135fs	NWD1_uc002net.3_Frame_Shift_Del_p.V1000fs|NWD1_uc002nev.3_Frame_Shift_Del_p.V929fs			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1135	WD 8.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GAGACGGCTGTTTTTGGTACT	0.552													7	701	---	---	---	---					
SFRS14	10147	broad.mit.edu	37	19	19136394	19136394	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr19:19136394delT	uc002nkx.2	-	3	909	c.763delA	c.(763-765)ATAfs	p.I255fs	SFRS14_uc002nkz.1_Frame_Shift_Del_p.I269fs|SFRS14_uc002nla.1_Frame_Shift_Del_p.I255fs|SFRS14_uc002nlb.2_Frame_Shift_Del_p.I255fs|SFRS14_uc010xqk.1_Intron	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	255					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			ACGGTGGGTATTTTTTTTGTG	0.502													8	345	---	---	---	---					
MYT1L	23040	broad.mit.edu	37	2	1907023	1907023	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr2:1907023delA	uc002qxe.2	-	14	2688	c.1861delT	c.(1861-1863)TACfs	p.Y621fs	MYT1L_uc002qxd.2_Frame_Shift_Del_p.Y619fs|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	621					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TTGTTTCTGTAGCCATACTGA	0.468													29	38	---	---	---	---					
MED15	51586	broad.mit.edu	37	22	20918793	20918795	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr22:20918793_20918795delCAG	uc002zsp.2	+	6	588_590	c.508_510delCAG	c.(508-510)CAGdel	p.Q174del	MED15_uc002zsn.1_In_Frame_Del_p.Q93del|MED15_uc002zso.2_In_Frame_Del_p.Q103del|MED15_uc002zsq.2_In_Frame_Del_p.Q174del|MED15_uc010gso.2_In_Frame_Del_p.Q174del|MED15_uc002zsr.2_In_Frame_Del_p.Q148del|MED15_uc011ahs.1_In_Frame_Del_p.Q148del|MED15_uc011aht.1_In_Frame_Del_p.Q148del|MED15_uc002zss.2_In_Frame_Del_p.Q93del|MED15_uc011ahu.1_5'Flank	NM_001003891	NP_001003891	Q96RN5	MED15_HUMAN	mediator complex subunit 15 isoform a	174	Poly-Gln.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			skin(1)	1	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			gcagcagttccagcagcagcagc	0.217											OREG0026319	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	44	---	---	---	---					
LGALS1	3956	broad.mit.edu	37	22	38074623	38074624	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr22:38074623_38074624insA	uc003atn.2	+	3	320_321	c.223_224insA	c.(223-225)GAGfs	p.E75fs		NM_002305	NP_002296	P09382	LEG1_HUMAN	galectin-1	75	Galectin.				apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of apoptosis	cytoplasm|extracellular space|proteinaceous extracellular matrix	galactoside binding|signal transducer activity				0	Melanoma(58;0.0574)					CGAGCAGCGGGAGGCTGTCTTT	0.688													35	6	---	---	---	---					
GPX1	2876	broad.mit.edu	37	3	49395674	49395676	+	In_Frame_Del	DEL	GCC	-	-	rs17838762		TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:49395674_49395676delGCC	uc011bcl.1	-	1	116_118	c.36_38delGGC	c.(34-39)GCGGCC>GCC	p.12_13AA>A	GPX1_uc011bcm.1_In_Frame_Del_p.12_13AA>A	NM_000581	NP_000572	P07203	GPX1_HUMAN	glutathione peroxidase 1 isoform 1	12_13					anti-apoptosis|cell redox homeostasis|glutathione metabolic process|heart contraction|hydrogen peroxide catabolic process|negative regulation of caspase activity|purine base metabolic process|purine nucleotide catabolic process|regulation of gene expression, epigenetic|regulation of mammary gland epithelial cell proliferation|regulation of proteasomal protein catabolic process|release of cytochrome c from mitochondria|response to selenium ion|UV protection	cytosol|mitochondrion	endopeptidase inhibitor activity|glutathione peroxidase activity|SH3 domain binding			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Glutathione(DB00143)	CACCGACTGGgccgccgccgccg	0.591													2	4	---	---	---	---					
CCDC80	151887	broad.mit.edu	37	3	112358682	112358682	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:112358682delT	uc003dzf.2	-	2	289	c.71delA	c.(70-72)CACfs	p.H24fs	CCDC80_uc011bhv.1_Frame_Shift_Del_p.H24fs|CCDC80_uc003dzg.2_Frame_Shift_Del_p.H24fs|CCDC80_uc003dzh.1_Frame_Shift_Del_p.H24fs	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	24										ovary(2)	2						GGCATGGGGGTGGGGTTCTGA	0.557													7	153	---	---	---	---					
TRA2B	6434	broad.mit.edu	37	3	185637260	185637262	+	In_Frame_Del	DEL	TCC	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr3:185637260_185637262delTCC	uc003fpv.2	-	7	1021_1023	c.745_747delGGA	c.(745-747)GGAdel	p.G249del	TRA2B_uc003fpt.2_RNA|TRA2B_uc003fpu.2_RNA|TRA2B_uc010hym.2_In_Frame_Del_p.G149del|TRA2B_uc003fpw.2_Intron	NM_004593	NP_004584	P62995	TRA2B_HUMAN	splicing factor, arginine/serine-rich 10	249	Arg/Ser-rich (RS2 domain).				nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)	2						CAGCTCTCCAtcctcctcctcct	0.320													7	127	---	---	---	---					
ATAD2	29028	broad.mit.edu	37	8	124384893	124384893	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr8:124384893delT	uc003yqh.3	-	3	462	c.354delA	c.(352-354)AAAfs	p.K118fs	ATAD2_uc011lii.1_5'UTR|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Frame_Shift_Del_p.K118fs	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	118					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TGTGCTCTTCTTTTTTTTTAT	0.199													11	333	---	---	---	---					
FAM22F	54754	broad.mit.edu	37	9	97080945	97080947	+	In_Frame_Del	DEL	AGA	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chr9:97080945_97080947delAGA	uc004aup.1	-	7	2092_2094	c.2071_2073delTCT	c.(2071-2073)TCTdel	p.S691del		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	691				Missing (in Ref. 2; AAI30391 and 3; CAB61394).							0		Acute lymphoblastic leukemia(62;0.136)				TGCTGGCAGGAGAAGGTGATGGG	0.611													6	2	---	---	---	---					
F8	2157	broad.mit.edu	37	X	154157686	154157686	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2MF-06A-11D-A21A-08	TCGA-EE-A2MF-10B-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9f9d1e6c-a778-45f7-ba1f-e5a654682a0f	ba23b700-550d-41b6-ac36-91ab1dd5df41	g.chrX:154157686delT	uc004fmt.2	-	14	4550	c.4379delA	c.(4378-4380)AATfs	p.N1460fs		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1460	B.		N -> K (in HEMA).		acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	AGAAAGGTTATTTTTTTTGGC	0.413													8	147	---	---	---	---					
