Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SAMD11	148398	broad.mit.edu	37	1	879131	879131	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:879131G>A	uc001abw.1	+	13	1823	c.1743G>A	c.(1741-1743)GAG>GAA	p.E581E	SAMD11_uc001abx.1_Silent_p.E444E	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	581	SAM.					nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		TGACGGAGGAGCACCTGCTGA	0.672													7	42					0	0	1	0	0
KLHL17	339451	broad.mit.edu	37	1	900523	900523	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:900523C>T	uc001aca.1	+	12	1988	c.1881C>T	c.(1879-1881)TTC>TTT	p.F627F	KLHL17_uc001acc.1_RNA|PLEKHN1_uc001acd.2_5'Flank|PLEKHN1_uc001acf.2_5'Flank|PLEKHN1_uc001ace.2_5'Flank	NM_198317	NP_938073	Q6TDP4	KLH17_HUMAN	kelch-like 17	627	Interaction with F-actin (By similarity).				actin cytoskeleton organization	actin cytoskeleton|cell junction|postsynaptic density|postsynaptic membrane	protein complex scaffold				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.52e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.59e-23)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000469)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		TGCTCAATTTCCCGCCGCCAT	0.642													5	49					0	0	1	0	0
AGRN	375790	broad.mit.edu	37	1	979003	979003	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:979003C>T	uc001ack.1	+	9	1739	c.1689C>T	c.(1687-1689)GCC>GCT	p.A563A		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	563	Kazal-like 6.				axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		TGGCTTTGGCCCAGCCCGTGT	0.687													17	70					0	0	1	0	0
AGRN	375790	broad.mit.edu	37	1	981176	981176	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:981176C>T	uc001ack.1	+	15	2650	c.2600C>T	c.(2599-2601)TCG>TTG	p.S867L		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	867	Laminin EGF-like 2.				axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		GGGCTGTGCTCGTGTAAGCCC	0.662													12	103					0	0	1	0	0
SDF4	51150	broad.mit.edu	37	1	1153970	1153970	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:1153970G>A	uc001adh.3	-	6	1109	c.780C>T	c.(778-780)TCC>TCT	p.S260S	SDF4_uc001adg.2_RNA|SDF4_uc001adi.3_Silent_p.S260S|SDF4_uc009vjv.2_Silent_p.S138S|SDF4_uc009vjw.2_RNA	NM_016176	NP_057260	Q9BRK5	CAB45_HUMAN	stromal cell derived factor 4 isoform 2	260	EF-hand 4.				cerebellum development|fat cell differentiation|response to ethanol|UV protection|zymogen granule exocytosis	bleb|Golgi lumen|late endosome|soluble fraction	calcium ion binding|calcium ion binding|identical protein binding|protein binding			upper_aerodigestive_tract(1)|large_intestine(1)	2	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;7.85e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.42e-21)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;4.83e-05)|Kidney(185;0.00252)|BRCA - Breast invasive adenocarcinoma(365;0.00263)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0368)|Lung(427;0.204)		CCACGGGCAGGGAGATGAACT	0.607													8	68					0	0	1	0	0
UBE2J2	118424	broad.mit.edu	37	1	1203257	1203257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:1203257G>A	uc001adn.2	-	2	426	c.116C>T	c.(115-117)TCG>TTG	p.S39L	UBE2J2_uc001adm.2_5'UTR|UBE2J2_uc001ado.2_Missense_Mutation_p.S39L|UBE2J2_uc001adp.2_Missense_Mutation_p.S39L|UBE2J2_uc001adq.2_5'UTR|UBE2J2_uc001adr.2_Intron|UBE2J2_uc001ads.2_5'UTR	NM_194458	NP_919440	Q8N2K1	UB2J2_HUMAN	ubiquitin conjugating enzyme E2, J2 isoform 3	39	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ATP binding|ubiquitin-protein ligase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;6.66e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.53e-21)|Colorectal(212;0.00019)|COAD - Colon adenocarcinoma(227;0.000215)|Kidney(185;0.00255)|BRCA - Breast invasive adenocarcinoma(365;0.00266)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0371)|Lung(427;0.205)		GAGAATATTCGAAGGGAGGGG	0.632													43	179					0	0	1	0	0
CCNL2	81669	broad.mit.edu	37	1	1325680	1325680	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:1325680G>A	uc001afi.2	-	8	968	c.936C>T	c.(934-936)GCC>GCT	p.A312A	CCNL2_uc010nym.1_RNA|CCNL2_uc001aff.1_Silent_p.A90A|CCNL2_uc001afg.1_Silent_p.A90A|CCNL2_uc001afh.2_3'UTR|CCNL2_uc001afj.2_3'UTR|CCNL2_uc001afk.2_3'UTR	NM_030937	NP_112199	Q96S94	CCNL2_HUMAN	cyclin L2 isoform A	312					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nuclear speck	protein kinase binding			ovary(2)|central_nervous_system(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.03e-36)|OV - Ovarian serous cystadenocarcinoma(86;4.17e-22)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.0023)|BRCA - Breast invasive adenocarcinoma(365;0.00465)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.146)		ACAGGCCCCGGGCTTGGGCCT	0.572													23	96					0	0	1	0	0
MIB2	142678	broad.mit.edu	37	1	1565904	1565904	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:1565904C>T	uc001agg.2	+	20	3163	c.3036C>T	c.(3034-3036)TTC>TTT	p.F1012F	MIB2_uc001agh.2_Silent_p.F998F|MIB2_uc001agi.2_Silent_p.F1008F|MIB2_uc001agj.2_Silent_p.F853F|MIB2_uc001agk.2_Silent_p.F947F|MIB2_uc001agm.2_3'UTR|MIB2_uc010nyq.1_Silent_p.F968F|MIB2_uc009vkh.2_Silent_p.F818F|MIB2_uc001agn.2_Silent_p.F644F|MIB2_uc001ago.2_Silent_p.F95F|MMP23B_uc001agp.2_5'Flank|MMP23B_uc001agq.2_5'Flank|MMP23B_uc001agr.2_5'Flank|MMP23B_uc009vki.2_5'Flank	NM_080875	NP_543151	Q96AX9	MIB2_HUMAN	mindbomb homolog 2	1012					Notch signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade	endosome	actin binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;5.26e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.54e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|BRCA - Breast invasive adenocarcinoma(365;0.00786)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		TCCAGATCTTCGTGTGAGCCG	0.677													5	18					0	0	1	0	0
SLC35E2	9906	broad.mit.edu	37	1	1670428	1670428	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:1670428G>A	uc001aib.1	-	3	807	c.391C>T	c.(391-393)CAG>TAG	p.Q131*	SLC35E2B_uc001ahh.3_Intron|SLC35E2_uc009vkm.1_Nonsense_Mutation_p.Q131*|SLC35E2_uc001ahy.2_Nonsense_Mutation_p.Q131*|SLC35E2_uc001ahz.2_Nonsense_Mutation_p.Q131*	NM_182838	NP_878258	P0CK97	S35E2_HUMAN	solute carrier family 35, member E2	131						integral to membrane				pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;5.61e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;5.26e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.54e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|BRCA - Breast invasive adenocarcinoma(365;0.00786)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GCCTTGTGCTGATATAAACAG	0.542													8	89					0	0	1	0	0
KIAA1751	85452	broad.mit.edu	37	1	1905564	1905564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:1905564C>T	uc001aim.1	-	7	730	c.574G>A	c.(574-576)GAG>AAG	p.E192K	KIAA1751_uc009vkz.1_Missense_Mutation_p.E192K	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	192										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		CCCGTGGCCTCCACCTCCTCA	0.652													5	43					0	0	1	0	0
PRKCZ	5590	broad.mit.edu	37	1	2103579	2103579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:2103579C>T	uc001aiq.2	+	12	1308	c.1147C>T	c.(1147-1149)CTC>TTC	p.L383F	PRKCZ_uc001air.2_Missense_Mutation_p.L200F|PRKCZ_uc010nyw.1_Missense_Mutation_p.L279F|PRKCZ_uc001ais.2_Missense_Mutation_p.L200F|PRKCZ_uc009vla.2_Missense_Mutation_p.L207F|PRKCZ_uc010nyx.1_RNA|PRKCZ_uc001ait.2_Missense_Mutation_p.L231F	NM_002744	NP_002735	Q05513	KPCZ_HUMAN	protein kinase C, zeta isoform 1	383	Protein kinase.				anti-apoptosis|intracellular signal transduction|negative regulation of insulin receptor signaling pathway|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein complex assembly|peptidyl-serine phosphorylation|platelet activation	endosome	ATP binding|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(2)	6	all_cancers(77;0.000177)|all_epithelial(69;6.41e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;1.14e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.96e-37)|OV - Ovarian serous cystadenocarcinoma(86;3.3e-23)|GBM - Glioblastoma multiforme(42;2.85e-08)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.00294)|BRCA - Breast invasive adenocarcinoma(365;0.00493)|STAD - Stomach adenocarcinoma(132;0.00669)|KIRC - Kidney renal clear cell carcinoma(229;0.0411)|Lung(427;0.213)		GGACAACGTCCTCCTGGATGC	0.627													8	43					0	0	1	0	0
TNFRSF14	8764	broad.mit.edu	37	1	2492151	2492151	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:2492151C>A	uc001ajr.2	+	5	848	c.549C>A	c.(547-549)ACC>ACA	p.T183T	TNFRSF14_uc009vlf.1_Silent_p.T183T|TNFRSF14_uc001ajt.1_Missense_Mutation_p.P353Q|TNFRSF14_uc001ajs.2_Silent_p.T183T	NM_003820	NP_003811	Q92956	TNR14_HUMAN	tumor necrosis factor receptor superfamily,	183	Extracellular (Potential).				immune response|interspecies interaction between organisms|T cell costimulation		tumor necrosis factor receptor activity			kidney(1)	1	all_cancers(77;0.000158)|all_epithelial(69;8.01e-05)|all_lung(157;0.0212)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.18e-20)|all_lung(118;1.67e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;1.1e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.02e-23)|GBM - Glioblastoma multiforme(42;1.11e-08)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000326)|BRCA - Breast invasive adenocarcinoma(365;0.00435)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.199)		AGCACCAGACCAAGTAAGTGA	0.617			Mis|N|F		follicular lymphoma								7	45					0.0293803	0.0295883	1	1	0
MMEL1	79258	broad.mit.edu	37	1	2525331	2525331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:2525331C>T	uc001ajy.2	-	19	2003	c.1789G>A	c.(1789-1791)GAG>AAG	p.E597K	MMEL1_uc009vlg.1_RNA	NM_033467	NP_258428	Q495T6	MMEL1_HUMAN	membrane metallo-endopeptidase-like 1	597	Lumenal (Potential).				proteolysis	extracellular region|integral to membrane|intracellular membrane-bounded organelle	metal ion binding|metalloendopeptidase activity				0	all_cancers(77;0.000233)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.03e-20)|all_lung(118;5.15e-09)|Lung NSC(185;9.02e-07)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;8.52e-23)|GBM - Glioblastoma multiforme(42;1.49e-08)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;0.000213)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00219)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.131)		TGTGGCTGCTCCTTGCTGAAG	0.557													11	43					0	0	1	0	0
MMEL1	79258	broad.mit.edu	37	1	2538422	2538422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:2538422C>T	uc001ajy.2	-	7	836	c.622G>A	c.(622-624)GAG>AAG	p.E208K	MMEL1_uc009vlg.1_RNA	NM_033467	NP_258428	Q495T6	MMEL1_HUMAN	membrane metallo-endopeptidase-like 1	208	Lumenal (Potential).				proteolysis	extracellular region|integral to membrane|intracellular membrane-bounded organelle	metal ion binding|metalloendopeptidase activity				0	all_cancers(77;0.000233)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.03e-20)|all_lung(118;5.15e-09)|Lung NSC(185;9.02e-07)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;8.52e-23)|GBM - Glioblastoma multiforme(42;1.49e-08)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;0.000213)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00219)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.131)		CCTACGGTCTCGTTCCACCTG	0.642													12	79					0	0	1	0	0
ACTRT2	140625	broad.mit.edu	37	1	2938602	2938602	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:2938602G>A	uc001ajz.2	+	1	557	c.352G>A	c.(352-354)GAG>AAG	p.E118K		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	118						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		GAACCCCAGGGAGAACCGTGA	0.607													4	72					0	0	1	0	0
ACTRT2	140625	broad.mit.edu	37	1	2939144	2939144	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:2939144G>A	uc001ajz.2	+	1	1099	c.894G>A	c.(892-894)GAG>GAA	p.E298E		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	298						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		TCTTTGGGGAGATTGTGCTGT	0.602													18	109					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3102723	3102723	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3102723C>T	uc001akf.2	+	2	152	c.72C>T	c.(70-72)CCC>CCT	p.P24P	PRDM16_uc001akc.2_Silent_p.P24P|PRDM16_uc001akd.2_Silent_p.P24P|PRDM16_uc001ake.2_Silent_p.P24P|PRDM16_uc009vlh.2_5'UTR	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	24					brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		TGTATGAGCCCAACCGGGACC	0.632			T	EVI1	MDS|AML								6	94					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3102760	3102760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3102760G>A	uc001akf.2	+	2	189	c.109G>A	c.(109-111)GAG>AAG	p.E37K	PRDM16_uc001akc.2_Missense_Mutation_p.E37K|PRDM16_uc001akd.2_Missense_Mutation_p.E37K|PRDM16_uc001ake.2_Missense_Mutation_p.E37K|PRDM16_uc009vlh.2_5'UTR	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	37					brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		CGCGGAGGACGAGGCCGAGGA	0.637			T	EVI1	MDS|AML								6	78					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3328936	3328936	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3328936C>T	uc001akf.2	+	9	2255	c.2175C>T	c.(2173-2175)TTC>TTT	p.F725F	PRDM16_uc001akc.2_Silent_p.F725F|PRDM16_uc001akd.2_Silent_p.F725F|PRDM16_uc001ake.2_Silent_p.F725F|PRDM16_uc009vlh.2_Silent_p.F426F	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	725	Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		ACTCGGCGTTCCCCTTCCAGT	0.617			T	EVI1	MDS|AML								11	57					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3329039	3329039	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3329039G>A	uc001akf.2	+	9	2358	c.2278G>A	c.(2278-2280)GAC>AAC	p.D760N	PRDM16_uc001akc.2_Missense_Mutation_p.D760N|PRDM16_uc001akd.2_Missense_Mutation_p.D760N|PRDM16_uc001ake.2_Missense_Mutation_p.D760N|PRDM16_uc009vlh.2_Missense_Mutation_p.D461N	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	760	Mediates interaction with SKI and regulation of TGF-beta signaling.|Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		GTCACCCCGGGACGCCCTCAA	0.647			T	EVI1	MDS|AML								6	78					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3329121	3329122	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3329121_3329122CC>AT	uc001akf.2	+	9	2440_2441	c.2360_2361CC>AT	c.(2359-2361)CCC>CAT	p.P787H	PRDM16_uc001akc.2_Missense_Mutation_p.P787H|PRDM16_uc001akd.2_Missense_Mutation_p.P787H|PRDM16_uc001ake.2_Missense_Mutation_p.P787H|PRDM16_uc009vlh.2_Missense_Mutation_p.P488H	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	787	Mediates interaction with SKI and regulation of TGF-beta signaling.|Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		CCCATCCTGCCCATGCCCAAGG	0.713			T	EVI1	MDS|AML								13	37					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3348587	3348587	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3348587G>A	uc001akf.2	+	16	3659	c.3579G>A	c.(3577-3579)GGG>GGA	p.G1193G	PRDM16_uc001akc.2_Silent_p.G1192G|PRDM16_uc001akd.2_Silent_p.G1192G|PRDM16_uc001ake.2_Silent_p.G1193G|PRDM16_uc009vlh.2_Silent_p.G893G	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	1193	Mediates interaction with SKI and regulation of TGF-beta signaling.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		CGACTTTTGGGAAGGGGCTGG	0.532			T	EVI1	MDS|AML								7	82					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3348617	3348617	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3348617G>A	uc001akf.2	+	16	3689	c.3609G>A	c.(3607-3609)GAG>GAA	p.E1203E	PRDM16_uc001akc.2_Silent_p.E1202E|PRDM16_uc001akd.2_Silent_p.E1202E|PRDM16_uc001ake.2_Silent_p.E1203E|PRDM16_uc009vlh.2_Silent_p.E903E	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	1203	Mediates interaction with SKI and regulation of TGF-beta signaling.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		GAGCAGCTGAGGAAGCATTTG	0.522			T	EVI1	MDS|AML								13	82					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3348635	3348636	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3348635_3348636AG>TA	uc001akf.2	+	16	3707_3708	c.3627_3628AG>TA	c.(3625-3630)AAAGAT>AATAAT	p.1209_1210KD>NN	PRDM16_uc001akc.2_Missense_Mutation_p.1208_1209KD>NN|PRDM16_uc001akd.2_Missense_Mutation_p.1208_1209KD>NN|PRDM16_uc001ake.2_Missense_Mutation_p.1209_1210KD>NN|PRDM16_uc009vlh.2_Missense_Mutation_p.909_910KD>NN	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	1209_1210	Mediates interaction with SKI and regulation of TGF-beta signaling.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		TTGAAGTTAAAGATGTGCTTAA	0.545			T	EVI1	MDS|AML								5	80					0	0	1	0	0
ARHGEF16	27237	broad.mit.edu	37	1	3389976	3389976	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3389976C>T	uc001akg.3	+	8	1443	c.1195C>T	c.(1195-1197)CGA>TGA	p.R399*	ARHGEF16_uc001aki.2_Nonsense_Mutation_p.R111*|ARHGEF16_uc001akj.2_Nonsense_Mutation_p.R111*|ARHGEF16_uc009vli.1_Nonsense_Mutation_p.R103*|ARHGEF16_uc010nzh.1_Nonsense_Mutation_p.R103*	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	399	DH.|Required for RHOG activation and mediates interaction with EPHA2.				activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		CGCCGCCTTCCGAGAGGCCCT	0.652													7	83					0	0	1	0	0
ARHGEF16	27237	broad.mit.edu	37	1	3395127	3395127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3395127C>T	uc001akg.3	+	12	2013	c.1765C>T	c.(1765-1767)CGC>TGC	p.R589C	ARHGEF16_uc001aki.2_Missense_Mutation_p.R301C|ARHGEF16_uc001akj.2_Missense_Mutation_p.R301C|ARHGEF16_uc010nzh.1_Missense_Mutation_p.R293C	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	589	PH.				activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		GACCCTGCTTCGCAACAGCGA	0.672													9	39					0	0	1	0	0
ARHGEF16	27237	broad.mit.edu	37	1	3396452	3396453	+	Missense_Mutation	DNP	GG	CA	CA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3396452_3396453GG>CA	uc001akg.3	+	14	2213_2214	c.1965_1966GG>CA	c.(1963-1968)GTGGTC>GTCATC	p.V656I	ARHGEF16_uc001aki.2_Missense_Mutation_p.V368I|ARHGEF16_uc001akj.2_Missense_Mutation_p.V368I|ARHGEF16_uc010nzh.1_Missense_Mutation_p.V360I	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	656	SH3.				activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		AGGCGGACGTGGTCCTGGTTCT	0.639													6	67					0	0	1	0	0
ARHGEF16	27237	broad.mit.edu	37	1	3397100	3397100	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3397100G>A	uc001akg.3	+	15	2327	c.2079G>A	c.(2077-2079)GTG>GTA	p.V693V	ARHGEF16_uc001aki.2_Silent_p.V405V|ARHGEF16_uc001akj.2_Silent_p.V405V|ARHGEF16_uc010nzh.1_Silent_p.V397V	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	693					activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		GTGTGGCCGTGGAGGGCAATG	0.662													6	48					0	0	1	0	0
WDR8	49856	broad.mit.edu	37	1	3548160	3548160	+	Silent	SNP	G	A	A	rs143201889		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3548160G>A	uc001ako.2	-	11	1218	c.1110C>T	c.(1108-1110)CTC>CTT	p.L370L	WDR8_uc001akn.3_Silent_p.L370L	NM_017818	NP_060288	Q9P2S5	WRP73_HUMAN	WD repeat domain 8	370						centrosome	protein binding				0	all_cancers(77;0.0128)|all_epithelial(69;0.00526)|Ovarian(185;0.0634)|Lung NSC(156;0.162)|all_lung(157;0.172)	all_epithelial(116;7.37e-22)|all_lung(118;8.23e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;4.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;4.16e-22)|GBM - Glioblastoma multiforme(42;1.05e-14)|Colorectal(212;1.19e-05)|BRCA - Breast invasive adenocarcinoma(365;2.67e-05)|COAD - Colon adenocarcinoma(227;5.82e-05)|Kidney(185;0.000364)|KIRC - Kidney renal clear cell carcinoma(229;0.00223)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		ACAGCTGCTCGAGCACCGCGA	0.647													4	46					0	0	1	0	0
CCDC27	148870	broad.mit.edu	37	1	3669122	3669122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3669122C>T	uc001akv.2	+	1	158	c.77C>T	c.(76-78)TCA>TTA	p.S26L		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	26										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		GGCCTGTCCTCATTCAGGTCC	0.572													7	84					0	0	1	0	0
CCDC27	148870	broad.mit.edu	37	1	3686416	3686416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3686416G>A	uc001akv.2	+	11	1894	c.1813G>A	c.(1813-1815)GAG>AAG	p.E605K	LOC388588_uc001akw.3_5'Flank	NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	605										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		CTTGGCCAACGAGATCTCTGA	0.557													22	109					0	0	1	0	0
DFFB	1677	broad.mit.edu	37	1	3784541	3784541	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:3784541T>C	uc001alc.2	+	4	757	c.434T>C	c.(433-435)TTG>TCG	p.L145S	DFFB_uc001ale.2_RNA|DFFB_uc009vlp.2_RNA|DFFB_uc001alb.2_RNA|DFFB_uc010nzn.1_Missense_Mutation_p.L169S|DFFB_uc009vlq.2_RNA|DFFB_uc009vlr.2_Missense_Mutation_p.L96S|DFFB_uc001ald.2_Missense_Mutation_p.L81S	NM_004402	NP_004393	O76075	DFFB_HUMAN	DNA fragmentation factor, 40 kD, beta	145					apoptotic chromosome condensation|DNA fragmentation involved in apoptotic nuclear change|intracellular signal transduction	cytosol|nucleoplasm	deoxyribonuclease activity|enzyme binding				0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_cancers(23;2.05e-30)|all_epithelial(116;6.22e-21)|all_lung(118;2.65e-08)|Lung NSC(185;6.25e-06)|Breast(487;0.000659)|Renal(390;0.00121)|all_neural(13;0.0019)|Hepatocellular(190;0.00705)|Colorectal(325;0.0113)|all_hematologic(16;0.0194)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0548)|Medulloblastoma(700;0.211)		Epithelial(90;1.18e-39)|OV - Ovarian serous cystadenocarcinoma(86;7.28e-23)|GBM - Glioblastoma multiforme(42;2.95e-17)|Colorectal(212;1.23e-05)|COAD - Colon adenocarcinoma(227;5.94e-05)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00038)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.124)		CTTGCAGGCTTGGAGTCCCGA	0.592													27	231					0	0	1	0	0
AJAP1	55966	broad.mit.edu	37	1	4834516	4834516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:4834516C>T	uc001alm.1	+	5	1574	c.1193C>T	c.(1192-1194)CCT>CTT	p.P398L	AJAP1_uc001aln.2_Missense_Mutation_p.P398L	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	398	Targeting signals.|Cytoplasmic (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		CATCTTATTCCTGTGGCCTTC	0.532													13	99					0	0	1	0	0
NPHP4	261734	broad.mit.edu	37	1	5964857	5964857	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:5964857G>A	uc001alq.1	-	16	2229	c.1963C>T	c.(1963-1965)CAG>TAG	p.Q655*	NPHP4_uc001als.1_RNA|NPHP4_uc009vlt.1_RNA|NPHP4_uc001alt.1_RNA|NPHP4_uc009vlu.1_RNA	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	655					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		CGGCAGTCCTGGGCCACTCTG	0.547													15	60					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6195421	6195421	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:6195421C>T	uc001amb.1	-	18	2839	c.2739G>A	c.(2737-2739)AAG>AAA	p.K913K	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	913					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TCTGGTCTTCCTTGGAGATGT	0.592													5	61					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6202196	6202196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:6202196G>A	uc001amb.1	-	15	2528	c.2428C>T	c.(2428-2430)CGT>TGT	p.R810C	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	810	Helicase ATP-binding.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		ACCTTCATACGGAATACCTTC	0.592													39	143					0	0	1	0	0
ESPN	83715	broad.mit.edu	37	1	6512052	6512052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:6512052C>T	uc001amy.2	+	10	2389	c.2221C>T	c.(2221-2223)CCC>TCC	p.P741S	ESPN_uc001amz.2_Missense_Mutation_p.P175S	NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	741					sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		GGCTCTCATCCCCACGCACGA	0.662													3	17					0	0	1	0	0
TNFRSF25	8718	broad.mit.edu	37	1	6522161	6522161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:6522161G>A	uc001ane.2	-	9	906	c.818C>T	c.(817-819)ACC>ATC	p.T273I	TNFRSF25_uc001ana.2_Missense_Mutation_p.T90I|TNFRSF25_uc001anb.2_RNA|TNFRSF25_uc001anc.2_RNA|TNFRSF25_uc001and.2_Missense_Mutation_p.T46I|TNFRSF25_uc009vlz.2_RNA|TNFRSF25_uc001anf.2_Missense_Mutation_p.T236I|TNFRSF25_uc001ang.2_Missense_Mutation_p.T228I|TNFRSF25_uc001anh.2_Missense_Mutation_p.T282I	NM_003790	NP_003781	Q93038	TNR25_HUMAN	tumor necrosis factor receptor superfamily,	273	Cytoplasmic (Potential).				apoptosis|induction of apoptosis by extracellular signals	cytosol|extracellular region|integral to plasma membrane	tumor necrosis factor receptor activity			central_nervous_system(2)|breast(1)	3	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Acute lymphoblastic leukemia(12;0.00157)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;4.58e-35)|GBM - Glioblastoma multiforme(13;3.06e-27)|Colorectal(212;6.01e-08)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|BRCA - Breast invasive adenocarcinoma(365;0.00105)|STAD - Stomach adenocarcinoma(132;0.00158)|READ - Rectum adenocarcinoma(331;0.0419)		CAACTGGACGGTGCAGATCTT	0.637													9	127					0	0	1	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6529212	6529212	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:6529212C>A	uc001ano.1	-	20	2408	c.2307G>T	c.(2305-2307)GAG>GAT	p.E769D	PLEKHG5_uc001ann.1_Missense_Mutation_p.E750D|PLEKHG5_uc001anq.1_Missense_Mutation_p.E790D|PLEKHG5_uc001anp.1_Missense_Mutation_p.E790D|TNFRSF25_uc001ana.2_5'Flank|TNFRSF25_uc001anb.2_5'Flank|TNFRSF25_uc001anc.2_5'Flank|TNFRSF25_uc001and.2_5'Flank|TNFRSF25_uc009vlz.2_5'Flank|TNFRSF25_uc001ane.2_5'Flank|TNFRSF25_uc001anf.2_5'Flank|TNFRSF25_uc001ang.2_5'Flank|TNFRSF25_uc001anh.2_5'Flank|TNFRSF25_uc001ani.1_5'Flank|PLEKHG5_uc001anj.1_Missense_Mutation_p.E274D|PLEKHG5_uc009vma.1_Missense_Mutation_p.E553D|PLEKHG5_uc010nzr.1_Missense_Mutation_p.E782D|PLEKHG5_uc001ank.1_Missense_Mutation_p.E713D|PLEKHG5_uc009vmb.1_Missense_Mutation_p.E713D|PLEKHG5_uc001anl.1_Missense_Mutation_p.E713D|PLEKHG5_uc001anm.1_Missense_Mutation_p.E713D|PLEKHG5_uc001anr.1_Translation_Start_Site	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	769	Glu-rich.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		cctcctcttcctcctcctgct	0.433													17	121					6.94344e-10	7.04245e-10	1	1	0
PLEKHG5	57449	broad.mit.edu	37	1	6530577	6530577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:6530577C>T	uc001ano.1	-	16	1938	c.1837G>A	c.(1837-1839)GAA>AAA	p.E613K	PLEKHG5_uc001ann.1_Missense_Mutation_p.E594K|PLEKHG5_uc001anq.1_Missense_Mutation_p.E634K|PLEKHG5_uc001anp.1_Missense_Mutation_p.E634K|PLEKHG5_uc001anj.1_Missense_Mutation_p.E118K|PLEKHG5_uc009vma.1_Missense_Mutation_p.E397K|PLEKHG5_uc010nzr.1_Missense_Mutation_p.E626K|PLEKHG5_uc001ank.1_Missense_Mutation_p.E557K|PLEKHG5_uc009vmb.1_Missense_Mutation_p.E557K|PLEKHG5_uc001anl.1_Missense_Mutation_p.E557K|PLEKHG5_uc001anm.1_Missense_Mutation_p.E557K|PLEKHG5_uc001anr.1_5'Flank	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	613					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		TTGTCCACTTCGTCGCTGCTG	0.687													5	21					0	0	1	0	0
NOL9	79707	broad.mit.edu	37	1	6610460	6610460	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:6610460G>A	uc001ans.2	-	2	631	c.612C>T	c.(610-612)AAC>AAT	p.N204N	NOL9_uc010nzs.1_RNA	NM_024654	NP_078930	Q5SY16	NOL9_HUMAN	nucleolar protein 9	204					maturation of 5.8S rRNA	nucleolus	ATP binding|polynucleotide 5'-hydroxyl-kinase activity|RNA binding			skin(1)	1	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;2.46e-35)|all_epithelial(116;1.41e-22)|all_lung(118;7.59e-07)|Lung NSC(185;4.28e-06)|Colorectal(325;4.52e-05)|Breast(487;0.000353)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.47e-07)|COAD - Colon adenocarcinoma(227;1.47e-05)|Kidney(185;5.27e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|BRCA - Breast invasive adenocarcinoma(365;0.00113)|STAD - Stomach adenocarcinoma(132;0.0017)|READ - Rectum adenocarcinoma(331;0.0649)		CATTACCAAGGTTAAGATGAG	0.333													18	61					0	0	1	0	0
TAS1R1	80835	broad.mit.edu	37	1	6631087	6631087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:6631087G>A	uc001ant.2	+	2	310	c.310G>A	c.(310-312)GAT>AAT	p.D104N	TAS1R1_uc001anu.2_Missense_Mutation_p.D104N|TAS1R1_uc001anv.2_Missense_Mutation_p.D104N|TAS1R1_uc001anw.2_Missense_Mutation_p.D104N	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b	104	Extracellular (Potential).				sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		CCAGCTGTATGATGTGTGTTC	0.557													20	152					0	0	1	0	0
PHF13	148479	broad.mit.edu	37	1	6680349	6680349	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:6680349C>T	uc001aob.3	+	3	999	c.628C>T	c.(628-630)CGA>TGA	p.R210*		NM_153812	NP_722519	Q86YI8	PHF13_HUMAN	PHD finger protein 13	210					cell division|chromatin modification|mitotic chromosome condensation	nucleoplasm	chromatin binding|methylated histone residue binding|zinc ion binding				0	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;1.46e-33)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.19e-07)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|STAD - Stomach adenocarcinoma(132;0.0165)|READ - Rectum adenocarcinoma(331;0.0642)		GGTGGTGTTCCGAGATGAGGA	0.507													10	34					0	0	1	0	0
CAMTA1	23261	broad.mit.edu	37	1	7798259	7798259	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:7798259T>A	uc001aoi.2	+	16	4106	c.3899T>A	c.(3898-3900)CTC>CAC	p.L1300H	CAMTA1_uc010nzv.1_Missense_Mutation_p.L387H|CAMTA1_uc001aok.3_Missense_Mutation_p.L343H|CAMTA1_uc001aoj.2_Missense_Mutation_p.L256H	NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	1300					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		AGCCGGGAACTCTCCCCTCCC	0.512													7	25					0	0	1	0	0
PER3	8863	broad.mit.edu	37	1	7887787	7887787	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:7887787T>G	uc001aoo.2	+	17	2949	c.2774T>G	c.(2773-2775)TTG>TGG	p.L925W	PER3_uc009vmg.1_Missense_Mutation_p.L933W|PER3_uc009vmh.1_Missense_Mutation_p.L926W|PER3_uc001aop.2_Missense_Mutation_p.L933W|PER3_uc010nzw.1_Missense_Mutation_p.L614W	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	925					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		AGCTCACCCTTGCAGTTAAAC	0.517													17	58					0	0	1	0	0
RERE	473	broad.mit.edu	37	1	8418357	8418357	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:8418357G>A	uc001ape.2	-	21	5048	c.4238C>T	c.(4237-4239)CCC>CTC	p.P1413L	RERE_uc001apf.2_Missense_Mutation_p.P1413L|RERE_uc001apd.2_Missense_Mutation_p.P859L	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1413					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		TCGGGCCAGGGGATCGCTGGT	0.453													10	35					0	0	1	0	0
RERE	473	broad.mit.edu	37	1	8418589	8418589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:8418589G>A	uc001ape.2	-	21	4816	c.4006C>T	c.(4006-4008)CCC>TCC	p.P1336S	RERE_uc001apf.2_Missense_Mutation_p.P1336S|RERE_uc001apd.2_Missense_Mutation_p.P782S	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1336					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		GGGTGCAGGGGGTCCAGCTCT	0.697													5	25					0	0	1	0	0
SLC2A7	155184	broad.mit.edu	37	1	9063374	9063374	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:9063374C>T	uc009vmo.1	-	12	1524	c.1524G>A	c.(1522-1524)AAG>AAA	p.K508K		NM_207420	NP_997303	Q6PXP3	GTR7_HUMAN	intestinal facilitative glucose transporter 7	508	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity				0	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.04e-07)|COAD - Colon adenocarcinoma(227;7.66e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		AGGAAGTTTCCTTGGCAGGAG	0.532													7	63					0	0	1	0	0
SLC2A7	155184	broad.mit.edu	37	1	9063437	9063437	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:9063437C>T	uc009vmo.1	-	12	1461	c.1461G>A	c.(1459-1461)GTG>GTA	p.V487V		NM_207420	NP_997303	Q6PXP3	GTR7_HUMAN	intestinal facilitative glucose transporter 7	487	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity				0	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.04e-07)|COAD - Colon adenocarcinoma(227;7.66e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		CTGGAAGCTTCACCCTGTTTC	0.498													5	99					0	0	1	0	0
SLC2A7	155184	broad.mit.edu	37	1	9083006	9083006	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:9083006G>A	uc009vmo.1	-	3	282	c.282C>T	c.(280-282)CTC>CTT	p.L94L		NM_207420	NP_997303	Q6PXP3	GTR7_HUMAN	intestinal facilitative glucose transporter 7	94	Helical; (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity				0	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.04e-07)|COAD - Colon adenocarcinoma(227;7.66e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		GCAGGCCCACGAGCAATGACC	0.537													6	149					0	0	1	0	0
SLC2A7	155184	broad.mit.edu	37	1	9085128	9085128	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:9085128G>A	uc009vmo.1	-	2	57	c.57C>T	c.(55-57)CTC>CTT	p.L19L		NM_207420	NP_997303	Q6PXP3	GTR7_HUMAN	intestinal facilitative glucose transporter 7	19	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity				0	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.04e-07)|COAD - Colon adenocarcinoma(227;7.66e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		GCGTCGGCTGGAGCCGCTGTA	0.607													7	31					0	0	1	0	0
SLC2A5	6518	broad.mit.edu	37	1	9097990	9097990	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:9097990T>C	uc001apo.2	-	11	1560	c.1268A>G	c.(1267-1269)AAC>AGC	p.N423S	SLC2A5_uc010nzy.1_Missense_Mutation_p.N364S|SLC2A5_uc010nzz.1_Missense_Mutation_p.N308S|SLC2A5_uc010oaa.1_Missense_Mutation_p.N379S|SLC2A5_uc010oab.1_Missense_Mutation_p.N423S	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	423	Helical; Name=11; (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		CACGGTGAAGTTGGAGAGCCA	0.632													14	37					0	0	1	0	0
SLC2A5	6518	broad.mit.edu	37	1	9101860	9101860	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:9101860G>A	uc001apo.2	-	5	847	c.555C>T	c.(553-555)CTC>CTT	p.L185L	SLC2A5_uc010nzy.1_Silent_p.L126L|SLC2A5_uc010nzz.1_Silent_p.L70L|SLC2A5_uc010oaa.1_Silent_p.L141L|SLC2A5_uc010oab.1_Silent_p.L185L|SLC2A5_uc010oac.1_3'UTR|SLC2A5_uc001app.3_Silent_p.L185L	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	185	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		CGTTTGCAAGGAGATTCCGAA	0.587													6	76					0	0	1	0	0
SLC2A5	6518	broad.mit.edu	37	1	9101987	9101987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:9101987G>A	uc001apo.2	-	5	720	c.428C>T	c.(427-429)TCC>TTC	p.S143F	SLC2A5_uc010nzy.1_Missense_Mutation_p.S84F|SLC2A5_uc010nzz.1_Missense_Mutation_p.S28F|SLC2A5_uc010oaa.1_Missense_Mutation_p.S99F|SLC2A5_uc010oab.1_Missense_Mutation_p.S143F|SLC2A5_uc010oac.1_Silent_p.F101F|SLC2A5_uc001app.3_Missense_Mutation_p.S143F	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	143	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		GACCACGTTGGAAGATACACC	0.498													3	19					0	0	1	0	0
GPR157	80045	broad.mit.edu	37	1	9165602	9165602	+	Silent	SNP	G	A	A	rs147122688	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:9165602G>A	uc001apq.1	-	3	878	c.735C>T	c.(733-735)TTC>TTT	p.F245F	GPR157_uc010oad.1_Intron	NM_024980	NP_079256	Q5UAW9	GP157_HUMAN	G protein-coupled receptor 157	245	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_lung(157;0.185)	all_epithelial(116;5.02e-20)|all_lung(118;3.6e-06)|Lung NSC(185;7.93e-06)|Renal(390;0.000147)|Breast(348;0.000688)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.16e-07)|COAD - Colon adenocarcinoma(227;7.73e-05)|Kidney(185;0.000252)|KIRC - Kidney renal clear cell carcinoma(229;0.000917)|STAD - Stomach adenocarcinoma(132;0.00178)|BRCA - Breast invasive adenocarcinoma(304;0.00186)|READ - Rectum adenocarcinoma(331;0.0642)		GGGTCAGCACGAACCGCACGG	0.667													6	23					0	0	1	0	0
SPSB1	80176	broad.mit.edu	37	1	9416477	9416477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:9416477C>T	uc010oae.1	+	2	866	c.527C>T	c.(526-528)TCC>TTC	p.S176F	SPSB1_uc001apv.2_Missense_Mutation_p.S176F	NM_025106	NP_079382	Q96BD6	SPSB1_HUMAN	splA/ryanodine receptor domain and SOCS box	176	B30.2/SPRY.				intracellular signal transduction	cytoplasm					0	all_lung(157;0.194)	all_epithelial(116;4.38e-15)|all_lung(118;0.000156)|Lung NSC(185;0.000446)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;2.72e-07)|COAD - Colon adenocarcinoma(227;9.12e-05)|Kidney(185;0.000296)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00193)|BRCA - Breast invasive adenocarcinoma(304;0.00202)|READ - Rectum adenocarcinoma(331;0.0419)		GTCCCTGACTCCTTCCTGGTA	0.537													7	140					0	0	1	0	0
SPSB1	80176	broad.mit.edu	37	1	9416581	9416581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:9416581C>T	uc010oae.1	+	2	970	c.631C>T	c.(631-633)CCT>TCT	p.P211S	SPSB1_uc001apv.2_Missense_Mutation_p.P211S	NM_025106	NP_079382	Q96BD6	SPSB1_HUMAN	splA/ryanodine receptor domain and SOCS box	211	B30.2/SPRY.				intracellular signal transduction	cytoplasm					0	all_lung(157;0.194)	all_epithelial(116;4.38e-15)|all_lung(118;0.000156)|Lung NSC(185;0.000446)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;2.72e-07)|COAD - Colon adenocarcinoma(227;9.12e-05)|Kidney(185;0.000296)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00193)|BRCA - Breast invasive adenocarcinoma(304;0.00202)|READ - Rectum adenocarcinoma(331;0.0419)		AAAACTGTATCCTGTAGTGAG	0.552													17	123					0	0	1	0	0
SLC25A33	84275	broad.mit.edu	37	1	9640052	9640052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:9640052C>T	uc001apw.2	+	6	746	c.523C>T	c.(523-525)CGT>TGT	p.R175C	SLC25A33_uc001apx.2_Missense_Mutation_p.R108C	NM_032315	NP_115691	Q9BSK2	S2533_HUMAN	mitochondrial carrier protein MGC4399	175	Solcar 2.				transport	integral to membrane|mitochondrial inner membrane					0	all_lung(157;0.246)	all_epithelial(116;1.16e-18)|all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Breast(348;0.00191)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.01e-08)|COAD - Colon adenocarcinoma(227;1.44e-05)|Kidney(185;0.000262)|KIRC - Kidney renal clear cell carcinoma(229;0.000957)|BRCA - Breast invasive adenocarcinoma(304;0.0019)|STAD - Stomach adenocarcinoma(132;0.00355)|READ - Rectum adenocarcinoma(331;0.0419)		CCAGTGTGCTCGTTACGTTTA	0.438													4	48					0	0	1	0	0
PGD	5226	broad.mit.edu	37	1	10477456	10477456	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:10477456C>T	uc001arc.2	+	10	1089	c.999C>T	c.(997-999)ATC>ATT	p.I333I	PGD_uc001ard.2_Silent_p.I253I|PGD_uc010oak.1_Silent_p.I311I|PGD_uc010oal.1_Silent_p.I320I	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	333					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		CCAAGATCATCTCTTACGCTC	0.507													22	208					0	0	1	0	0
DFFA	1676	broad.mit.edu	37	1	10523120	10523120	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:10523120A>T	uc001arj.2	-	5	876	c.778T>A	c.(778-780)TTG>ATG	p.L260M	DFFA_uc001ark.2_Missense_Mutation_p.L260M	NM_004401	NP_004392	O00273	DFFA_HUMAN	DNA fragmentation factor, 45kDa, alpha	260					DNA fragmentation involved in apoptotic nuclear change|intracellular signal transduction|negative regulation of apoptosis	cytosol|mitochondrion|nucleoplasm|plasma membrane	deoxyribonuclease activity|identical protein binding				0	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.25e-07)|COAD - Colon adenocarcinoma(227;7.25e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000296)|Kidney(185;0.00074)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0487)		CCCACCTCCAAATCCTGACTA	0.557													8	77					0	0	1	0	0
CASZ1	54897	broad.mit.edu	37	1	10703324	10703324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:10703324C>T	uc001aro.2	-	19	4233	c.3913G>A	c.(3913-3915)GAG>AAG	p.E1305K		NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	1305	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		TGGCAGCCCTCCCGGATGCAG	0.632													7	41					0	0	1	0	0
CASZ1	54897	broad.mit.edu	37	1	10710777	10710777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:10710777G>A	uc001aro.2	-	13	3172	c.2852C>T	c.(2851-2853)TCA>TTA	p.S951L	CASZ1_uc001arp.1_Missense_Mutation_p.S951L	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	951					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		TAAAAGAGATGAATTTGCCGG	0.562													11	153					0	0	1	0	0
CASZ1	54897	broad.mit.edu	37	1	10719845	10719845	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:10719845G>A	uc001aro.2	-	6	1574	c.1254C>T	c.(1252-1254)GCC>GCT	p.A418A	CASZ1_uc001arp.1_Silent_p.A418A|CASZ1_uc009vmx.2_Silent_p.A442A|CASZ1_uc001arq.1_Silent_p.A277A	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	418					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		AGGACAGGGAGGCAGGAGGCT	0.682													6	101					0	0	1	0	0
CASZ1	54897	broad.mit.edu	37	1	10725381	10725381	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:10725381G>A	uc001aro.2	-	5	584	c.264C>T	c.(262-264)ATC>ATT	p.I88I	CASZ1_uc001arp.1_Silent_p.I88I|CASZ1_uc009vmx.2_Silent_p.I112I	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	88					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		CCCACTTCTCGATCACTGCCC	0.701													8	102					0	0	1	0	0
C1orf127	148345	broad.mit.edu	37	1	11008508	11008508	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:11008508G>A	uc010oao.1	-	8	1242	c.1237C>T	c.(1237-1239)CTG>TTG	p.L413L	C1orf127_uc001arr.1_Silent_p.L395L|C1orf127_uc001ars.1_Silent_p.L387L	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	413										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		CCTCTCAGCAGGAGGGGACTT	0.607													8	48					0	0	1	0	0
C1orf127	148345	broad.mit.edu	37	1	11008787	11008787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:11008787C>T	uc010oao.1	-	8	963	c.958G>A	c.(958-960)GAA>AAA	p.E320K	C1orf127_uc001arr.1_Missense_Mutation_p.E302K|C1orf127_uc001ars.1_Missense_Mutation_p.E294K	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	320										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		ATCCCTGCTTCCCCTGGGGGA	0.647													5	126					0	0	1	0	0
MASP2	10747	broad.mit.edu	37	1	11097823	11097823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:11097823G>A	uc001aru.2	-	7	956	c.935C>T	c.(934-936)TCA>TTA	p.S312L		NM_006610	NP_006601	O00187	MASP2_HUMAN	mannan-binding lectin serine protease 2 isoform	312	Sushi 1.				complement activation, classical pathway|complement activation, lectin pathway|proteolysis	extracellular region	calcium ion binding|calcium-dependent protein binding|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.071)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.12e-07)|COAD - Colon adenocarcinoma(227;7.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)|STAD - Stomach adenocarcinoma(313;0.192)		TTGCACAGGTGAAACGTGGCC	0.502											OREG0013096	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	92					0	0	1	0	0
MASP2	10747	broad.mit.edu	37	1	11102955	11102955	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:11102955C>T	uc001aru.2	-	6	887	c.866G>A	c.(865-867)TGG>TAG	p.W289*		NM_006610	NP_006601	O00187	MASP2_HUMAN	mannan-binding lectin serine protease 2 isoform	289	CUB 2.				complement activation, classical pathway|complement activation, lectin pathway|proteolysis	extracellular region	calcium ion binding|calcium-dependent protein binding|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.071)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.12e-07)|COAD - Colon adenocarcinoma(227;7.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)|STAD - Stomach adenocarcinoma(313;0.192)		GTGGATCTTCCAGCCTGTGTG	0.532													9	107					0	0	1	0	0
SRM	6723	broad.mit.edu	37	1	11116698	11116698	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:11116698G>A	uc001arz.1	-	4	589	c.498C>T	c.(496-498)GCC>GCT	p.A166A	SRM_uc001ary.1_Silent_p.A27A	NM_003132	NP_003123	P19623	SPEE_HUMAN	spermidine synthase	166					spermidine biosynthetic process	cytosol	protein homodimerization activity|spermidine synthase activity				0	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.228)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)|STAD - Stomach adenocarcinoma(313;0.192)	S-Adenosylmethionine(DB00118)|Spermine(DB00127)	TCACGTCGAAGGCATCCTGAT	0.557													4	53					0	0	1	0	0
EXOSC10	5394	broad.mit.edu	37	1	11151152	11151152	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:11151152G>A	uc001asa.2	-	5	612	c.562C>T	c.(562-564)CGA>TGA	p.R188*	EXOSC10_uc001asb.2_Nonsense_Mutation_p.R188*|EXOSC10_uc009vmy.1_Nonsense_Mutation_p.R188*	NM_001001998	NP_001001998	Q01780	EXOSX_HUMAN	exosome component 10 isoform 1	188					CUT catabolic process|histone mRNA catabolic process|maturation of 5.8S rRNA|nuclear polyadenylation-dependent rRNA catabolic process|nuclear retention of unspliced pre-mRNA at the site of transcription|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasm|nuclear exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5' exonuclease activity|exoribonuclease activity|identical protein binding|nucleotide binding|protein serine/threonine kinase activity|RNA binding			upper_aerodigestive_tract(1)	1	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.18e-07)|COAD - Colon adenocarcinoma(227;8.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000315)|Kidney(185;0.000832)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|READ - Rectum adenocarcinoma(331;0.0526)|STAD - Stomach adenocarcinoma(313;0.202)		ATCTTCTCTCGAAACTTGAGC	0.388													35	82					0	0	1	0	0
MTOR	2475	broad.mit.edu	37	1	11188075	11188075	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:11188075G>A	uc001asd.2	-	43	6140	c.6019C>T	c.(6019-6021)CAG>TAG	p.Q2007*	MTOR_uc001asc.2_Nonsense_Mutation_p.Q212*	NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	2007					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						ATGGCCTGCTGGACCAGGGTG	0.557													47	111					0	0	1	0	0
UBIAD1	29914	broad.mit.edu	37	1	11345969	11345969	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:11345969C>T	uc001asg.2	+	2	1132	c.798C>T	c.(796-798)TTC>TTT	p.F266F		NM_013319	NP_037451	Q9Y5Z9	UBIA1_HUMAN	UbiA prenyltransferase domain containing 1	266	Helical; (Potential).				menaquinone biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrion|nucleus	prenyltransferase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.012)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.52e-06)|COAD - Colon adenocarcinoma(227;0.000254)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0487)		CACTGCTCTTCCTGCCCTACC	0.587													21	99					0	0	1	0	0
PTCHD2	57540	broad.mit.edu	37	1	11561197	11561197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:11561197C>T	uc001ash.3	+	2	286	c.148C>T	c.(148-150)CCC>TCC	p.P50S	PTCHD2_uc001asi.1_Missense_Mutation_p.P50S	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	50	Cytoplasmic (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		GCGGCACTGGCCCCTGGCTTC	0.657													16	62					0	0	1	0	0
C1orf187	374946	broad.mit.edu	37	1	11772432	11772432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:11772432G>A	uc001asr.1	+	5	933	c.793G>A	c.(793-795)GAA>AAA	p.E265K		NM_198545	NP_940947	Q8NBI3	DRAXI_HUMAN	chromosome 1 open reading frame 187 precursor	265					axon guidance|commissural neuron differentiation in spinal cord|dorsal spinal cord development|forebrain development|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular region					0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.48e-06)|COAD - Colon adenocarcinoma(227;0.000283)|BRCA - Breast invasive adenocarcinoma(304;0.000316)|Kidney(185;0.000841)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|STAD - Stomach adenocarcinoma(313;0.00754)|READ - Rectum adenocarcinoma(331;0.0651)		TGATGGTAACGAAACATCACC	0.567													12	85					0	0	1	0	0
MTHFR	4524	broad.mit.edu	37	1	11854584	11854584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:11854584G>A	uc001atc.1	-	8	1362	c.1178C>T	c.(1177-1179)TCT>TTT	p.S393F	MTHFR_uc001atb.1_Missense_Mutation_p.S416F	NM_005957	NP_005948	P42898	MTHR_HUMAN	5,10-methylenetetrahydrofolate reductase	393					blood circulation|folic acid metabolic process	cytosol	methylenetetrahydrofolate reductase (NADPH) activity|protein binding				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)	Benazepril(DB00542)|Cyanocobalamin(DB00115)|Folic Acid(DB00158)|L-Methionine(DB00134)|Menadione(DB00170)|Methotrexate(DB00563)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|Raltitrexed(DB00293)|Riboflavin(DB00140)|S-Adenosylmethionine(DB00118)|Tetrahydrofolic acid(DB00116)	GGCAGGGGAAGAGGAATTGCC	0.597													18	54					0	0	1	0	0
CLCN6	1185	broad.mit.edu	37	1	11883832	11883832	+	Silent	SNP	C	T	T	rs147734059	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:11883832C>T	uc001ate.3	+	7	635	c.522C>T	c.(520-522)ATC>ATT	p.I174I	CLCN6_uc009vnf.1_Silent_p.I174I|CLCN6_uc009vng.1_Silent_p.I174I|CLCN6_uc009vnh.1_Silent_p.I174I|CLCN6_uc010oat.1_5'UTR|CLCN6_uc010oau.1_Silent_p.I152I	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	174					cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TGCCAGGAATCGTCCGTCTCC	0.552													8	70					0	0	1	0	0
CLCN6	1185	broad.mit.edu	37	1	11887244	11887244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:11887244C>T	uc001ate.3	+	10	919	c.806C>T	c.(805-807)TCG>TTG	p.S269L	CLCN6_uc009vnf.1_Silent_p.F272F|CLCN6_uc009vng.1_Silent_p.F260F|CLCN6_uc009vnh.1_Missense_Mutation_p.S269L|CLCN6_uc010oat.1_5'UTR|CLCN6_uc010oau.1_Missense_Mutation_p.S247L	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	269					cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		GAGGAGGGTTCGTCCTTCTGG	0.552													4	63					0	0	1	0	0
NPPB	4879	broad.mit.edu	37	1	11918790	11918790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:11918790G>A	uc001atj.2	-	1	203	c.101C>T	c.(100-102)TCA>TTA	p.S34L		NM_002521	NP_002512	P16860	ANFB_HUMAN	natriuretic peptide precursor B preproprotein	34					body fluid secretion|cGMP biosynthetic process|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation	extracellular space	diuretic hormone activity			ovary(2)	2	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.88e-06)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)	Carvedilol(DB01136)|Nesiritide(DB04899)|Testosterone(DB00624)	GTCCGAGGCTGAACCGGGGCT	0.627													7	145					0	0	1	0	0
MFN2	9927	broad.mit.edu	37	1	12062089	12062089	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12062089C>T	uc001atn.3	+	11	1542	c.1089C>T	c.(1087-1089)GTC>GTT	p.V363V	MFN2_uc009vni.2_Silent_p.V363V	NM_014874	NP_055689	O95140	MFN2_HUMAN	mitofusin 2	363	Cytoplasmic (Potential).				blood coagulation|mitochondrial fusion|mitochondrial membrane organization|mitochondrion localization|negative regulation of Ras protein signal transduction|negative regulation of smooth muscle cell proliferation|protein targeting to mitochondrion	cytosol|integral to membrane|intrinsic to mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.25e-06)|COAD - Colon adenocarcinoma(227;0.000302)|BRCA - Breast invasive adenocarcinoma(304;0.000329)|Kidney(185;0.000896)|KIRC - Kidney renal clear cell carcinoma(229;0.00274)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		AGCACACGGTCCGGGCCAAGC	0.602													19	149					0	0	1	0	0
MIIP	60672	broad.mit.edu	37	1	12082306	12082306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12082306C>T	uc001ato.1	+	3	449	c.269C>T	c.(268-270)TCG>TTG	p.S90L		NM_021933	NP_068752	Q5JXC2	MIIP_HUMAN	invasion inhibitory protein 45	90										ovary(1)	1						GTGGCCAGATCGGGGGTGGCC	0.677													13	81					0	0	1	0	0
MIIP	60672	broad.mit.edu	37	1	12082318	12082318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12082318C>T	uc001ato.1	+	3	461	c.281C>T	c.(280-282)TCT>TTT	p.S94F		NM_021933	NP_068752	Q5JXC2	MIIP_HUMAN	invasion inhibitory protein 45	94										ovary(1)	1						GGGGTGGCCTCTCTCCCACCT	0.692													5	86					0	0	1	0	0
TNFRSF8	943	broad.mit.edu	37	1	12170185	12170185	+	Silent	SNP	C	T	T	rs145520020	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12170185C>T	uc001atq.2	+	6	822	c.600C>T	c.(598-600)CTC>CTT	p.L200L	TNFRSF8_uc010obc.1_Silent_p.L89L	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	200	Extracellular (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		GCACCCGCCTCGCCCAGGAAG	0.627													15	61					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12321191	12321191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12321191C>T	uc001atv.2	+	12	1540	c.1399C>T	c.(1399-1401)CCT>TCT	p.P467S	VPS13D_uc001atw.2_Missense_Mutation_p.P467S	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	467					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		GCAGTGGATTCCTGAAGAGAT	0.502													11	111					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12337667	12337667	+	Missense_Mutation	SNP	C	T	T	rs12407578	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12337667C>T	uc001atv.2	+	19	4163	c.4022C>T	c.(4021-4023)TCG>TTG	p.S1341L	VPS13D_uc001atw.2_Missense_Mutation_p.S1341L|VPS13D_uc001atx.2_Missense_Mutation_p.S529L	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1341					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		GAGATGGTATCGCTCTTTGAA	0.438													4	26					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12342813	12342813	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12342813C>T	uc001atv.2	+	21	4795	c.4654C>T	c.(4654-4656)CTC>TTC	p.L1552F	VPS13D_uc001atw.2_Missense_Mutation_p.L1552F|VPS13D_uc001atx.2_Missense_Mutation_p.L740F	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1552					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CCTGGACAATCTCGTGTACAG	0.433													5	64					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12368588	12368588	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12368588G>A	uc001atv.2	+	27	6681	c.6540G>A	c.(6538-6540)GAG>GAA	p.E2180E	VPS13D_uc001atw.2_Silent_p.E2180E|VPS13D_uc001atx.2_Silent_p.E1368E|VPS13D_uc001aty.1_5'Flank	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2180					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AGGCACCAGAGGATAGTAGTG	0.502													34	120					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12460289	12460290	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12460289_12460290CC>AT	uc001atv.2	+	61	11827_11828	c.11686_11687CC>AT	c.(11686-11688)CCC>ATC	p.P3896I	VPS13D_uc001atw.2_Missense_Mutation_p.P3871I|VPS13D_uc001atx.2_Missense_Mutation_p.P3083I|VPS13D_uc009vnl.2_RNA	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3895					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CTATGTGACTCCCCTGAGCAAT	0.515													12	75					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12557622	12557622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12557622C>T	uc001atv.2	+	68	12872	c.12731C>T	c.(12730-12732)TCT>TTT	p.S4244F	VPS13D_uc001atw.2_Missense_Mutation_p.S4219F|VPS13D_uc001atx.2_Missense_Mutation_p.S3431F|VPS13D_uc009vnl.2_RNA|VPS13D_uc010obd.1_Missense_Mutation_p.S242F	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	4243					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CCCCGATATTCTGAGAGCCAG	0.542													21	55					0	0	1	0	0
DHRS3	9249	broad.mit.edu	37	1	12628409	12628409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12628409C>T	uc001auc.2	-	6	1336	c.869G>A	c.(868-870)GGA>GAA	p.G290E	DHRS3_uc001aub.2_Missense_Mutation_p.G205E	NM_004753	NP_004744	O75911	DHRS3_HUMAN	dehydrogenase/reductase (SDR family) member 3	290					retinol metabolic process|visual perception	integral to membrane	electron carrier activity|NADP-retinol dehydrogenase activity|nucleotide binding			skin(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.11e-05)|all_lung(284;4.58e-05)|Renal(390;0.000147)|Colorectal(325;0.000585)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|Colorectal(212;9.25e-07)|COAD - Colon adenocarcinoma(227;0.000326)|BRCA - Breast invasive adenocarcinoma(304;0.000344)|Kidney(185;0.00235)|KIRC - Kidney renal clear cell carcinoma(229;0.00656)|STAD - Stomach adenocarcinoma(313;0.00798)|READ - Rectum adenocarcinoma(331;0.0419)	Vitamin A(DB00162)	GGTGTAGGTTCCTGAGAATTT	0.537													20	147					0	0	1	0	0
C1orf158	93190	broad.mit.edu	37	1	12819315	12819315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12819315G>A	uc001auh.2	+	3	514	c.298G>A	c.(298-300)GAC>AAC	p.D100N	C1orf158_uc010obe.1_Missense_Mutation_p.D100N	NM_152290	NP_689503	Q8N1D5	CA158_HUMAN	hypothetical protein LOC93190	100										ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00575)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		CACCTATGACGACCATTACAA	0.567													22	121					0	0	1	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887587	12887587	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12887587C>T	uc001auk.2	-	3	466	c.270G>A	c.(268-270)AGG>AGA	p.R90R		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	90											0						GTGTTTTGTTCCTCTTGGCAT	0.483													66	244					0	0	1	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12888493	12888493	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12888493C>A	uc001auk.2	-	2	227	c.31G>T	c.(31-33)GCC>TCC	p.A11S		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	11											0						AGCTTCAGGGCCTCACAGCGT	0.627													5	112					0.00198382	0.00200104	1	1	0
LOC649330	649330	broad.mit.edu	37	1	12907576	12907576	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12907576C>T	uc009vno.2	-	1	662	c.567G>A	c.(565-567)CAG>CAA	p.Q189Q	HNRNPCL1_uc010obf.1_Silent_p.Q189Q	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	189							nucleic acid binding|nucleotide binding				0						TCTGTTTTATCTGGGTCAACT	0.428													44	126					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907745	12907745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12907745G>A	uc009vno.2	-	1	493	c.398C>T	c.(397-399)CCT>CTT	p.P133L	HNRNPCL1_uc010obf.1_Missense_Mutation_p.P133L	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	133							nucleic acid binding|nucleotide binding				0						AATGGGAGGAGGAGGAGGTAC	0.493													9	77					0	0	1	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919002	12919002	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12919002G>A	uc001aum.1	+	2	225	c.138G>A	c.(136-138)AGG>AGA	p.R46R		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	46											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCTTCAGCAGGAGACACTTCC	0.592													8	132					0	0	1	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12921556	12921556	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12921556G>A	uc001aum.1	+	4	1434	c.1347G>A	c.(1345-1347)AGG>AGA	p.R449R		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	449											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AGCCCAAGAGGATCTTCATTG	0.557													13	132					0	0	1	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12942168	12942168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12942168G>A	uc001aun.2	-	3	453	c.382C>T	c.(382-384)CTC>TTC	p.L128F		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	128										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TTGGCATTGAGGAAGCACCCA	0.493													62	173					0	0	1	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12943132	12943132	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12943132G>A	uc001aun.2	-	2	155	c.84C>T	c.(82-84)TCC>TCT	p.S28S		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	28										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCTCCAGGGTGGACATGGCCA	0.587													56	150					0	0	1	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12943161	12943161	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:12943161G>A	uc001aun.2	-	2	126	c.55C>T	c.(55-57)CTG>TTG	p.L19L		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	19										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCCCTTAGCAGGCTCCGCCCT	0.562													14	191					0	0	1	0	0
PRAMEF18	391003	broad.mit.edu	37	1	13695845	13695845	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:13695845T>G	uc009vny.1	-	3	1167	c.1120A>C	c.(1120-1122)AGC>CGC	p.S374R		NM_001099850	NP_001093320	Q5VWM3	PRA18_HUMAN	PRAME family member 18	374											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GAGCAGCGGCTCAGGGCAGGC	0.557													52	197					0	0	1	0	0
PRDM2	7799	broad.mit.edu	37	1	14057532	14057532	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:14057532C>T	uc001avi.2	+	3	903	c.47C>T	c.(46-48)GCT>GTT	p.A16V	PRDM2_uc001avg.2_Missense_Mutation_p.A16V|PRDM2_uc001avh.2_Missense_Mutation_p.A16V|PRDM2_uc001avj.2_RNA	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	16						Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		GAGACCCTGGCTGAGGTACCC	0.512													6	80					0	0	1	0	0
PRDM2	7799	broad.mit.edu	37	1	14107154	14107154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:14107154C>T	uc001avi.2	+	8	3720	c.2864C>T	c.(2863-2865)TCC>TTC	p.S955F	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Missense_Mutation_p.S955F|PRDM2_uc001avj.2_Intron|PRDM2_uc001avk.2_Missense_Mutation_p.S754F|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	955	Pro-rich.					Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		CAGACACCCTCCCTTTCATCC	0.607													13	192					0	0	1	0	0
KAZ	23254	broad.mit.edu	37	1	15392178	15392178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:15392178G>A	uc001avm.3	+	8	1432	c.1151G>A	c.(1150-1152)GGA>GAA	p.G384E	KAZ_uc009vog.1_Missense_Mutation_p.G384E|KAZ_uc010obj.1_Missense_Mutation_p.G384E|KAZ_uc001avo.2_Missense_Mutation_p.G378E|KAZ_uc001avp.2_Missense_Mutation_p.G290E|KAZ_uc001avq.2_Missense_Mutation_p.G290E|KAZ_uc001avr.2_3'UTR	NM_201628	NP_963922	Q674X7	KAZRN_HUMAN	kazrin isoform E	384					keratinization	cornified envelope|cytoplasm|desmosome|nucleus					0						GAGAAGATGGGATTCGGCTCC	0.537													7	78					0	0	1	0	0
KAZ	23254	broad.mit.edu	37	1	15430618	15430618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:15430618C>T	uc001avm.3	+	13	2262	c.1981C>T	c.(1981-1983)CCC>TCC	p.P661S	KAZ_uc001avs.3_Missense_Mutation_p.P108S	NM_201628	NP_963922	Q674X7	KAZRN_HUMAN	kazrin isoform E	661	SAM 3.				keratinization	cornified envelope|cytoplasm|desmosome|nucleus					0						CCTGGGCATCCCCAGTGGGAA	0.632													7	18					0	0	1	0	0
TMEM51	55092	broad.mit.edu	37	1	15541735	15541735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:15541735C>T	uc001avw.3	+	3	671	c.152C>T	c.(151-153)ACC>ATC	p.T51I	TMEM51_uc010obk.1_Missense_Mutation_p.T51I|TMEM51_uc001avz.2_Missense_Mutation_p.T51I|TMEM51_uc001avy.2_Missense_Mutation_p.T51I|TMEM51_uc001avx.2_Missense_Mutation_p.T51I	NM_001136216	NP_001129688	Q9NW97	TMM51_HUMAN	transmembrane protein 51	51						integral to membrane					0		Renal(390;0.00145)|Breast(348;0.00186)|Colorectal(325;0.00215)|all_lung(284;0.00459)|Lung NSC(340;0.0104)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;2.07e-06)|COAD - Colon adenocarcinoma(227;7.14e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000175)|KIRC - Kidney renal clear cell carcinoma(229;0.00141)|STAD - Stomach adenocarcinoma(313;0.00644)|READ - Rectum adenocarcinoma(331;0.0751)		AGCAACAAGACCGAGGTGGGT	0.627													29	159					0	0	1	0	0
CELA2B	51032	broad.mit.edu	37	1	15808769	15808769	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:15808769G>A	uc001awl.2	+	4	262	c.237G>A	c.(235-237)GGG>GGA	p.G79G		NM_015849	NP_056933	P08218	CEL2B_HUMAN	elastase 2B preproprotein	79	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						GCTCCTCCGGGATCTACCGCG	0.567													5	67					0	0	1	0	0
PLEKHM2	23207	broad.mit.edu	37	1	16056306	16056306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:16056306C>T	uc010obo.1	+	14	2317	c.2090C>T	c.(2089-2091)TCT>TTT	p.S697F		NM_015164	NP_055979	Q8IWE5	PKHM2_HUMAN	pleckstrin homology domain containing, family M	697					Golgi organization	cytoplasm	kinesin binding			ovary(1)	1		Colorectal(325;0.000259)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00057)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		TTTTTGGCTTCTTTGAAGTCA	0.557													12	43					0	0	1	0	0
SPEN	23013	broad.mit.edu	37	1	16242646	16242646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:16242646C>T	uc001axk.1	+	6	1471	c.1267C>T	c.(1267-1269)CGC>TGC	p.R423C	SPEN_uc010obp.1_Missense_Mutation_p.R382C	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	423	By similarity.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		AAATGAATTTCGCCCCTTGGA	0.368													14	35					0	0	1	0	0
C1orf64	149563	broad.mit.edu	37	1	16332565	16332565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:16332565G>A	uc001axn.2	+	2	302	c.234G>A	c.(232-234)ATG>ATA	p.M78I		NM_178840	NP_849162	Q8NEQ6	CA064_HUMAN	hypothetical protein LOC149563	78										breast(2)	2		Colorectal(325;0.000435)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;3.25e-07)|COAD - Colon adenocarcinoma(227;2.08e-05)|BRCA - Breast invasive adenocarcinoma(304;9.19e-05)|Kidney(64;0.000165)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0114)|READ - Rectum adenocarcinoma(331;0.0649)		CCCCACCAATGAAGACCTACA	0.627													30	109					0	0	1	0	0
HSPB7	27129	broad.mit.edu	37	1	16342141	16342141	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:16342141G>A	uc001axo.2	-	3	1274	c.447C>T	c.(445-447)ATC>ATT	p.I149I	HSPB7_uc001axp.2_Silent_p.I232I|HSPB7_uc001axq.2_Silent_p.I241I|HSPB7_uc001axr.2_Silent_p.I242I|HSPB7_uc001axs.2_Silent_p.I224I	NM_014424	NP_055239	Q9UBY9	HSPB7_HUMAN	cardiovascular heat shock protein	149					regulation of heart contraction|response to heat|response to unfolded protein	Cajal body	protein C-terminus binding				0		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.21e-08)|COAD - Colon adenocarcinoma(227;5.5e-06)|BRCA - Breast invasive adenocarcinoma(304;9.08e-05)|Kidney(64;0.000162)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00656)|READ - Rectum adenocarcinoma(331;0.0649)		GCCGTGCCCGGATAGTGAGGC	0.637													5	72					0	0	1	0	0
EPHA2	1969	broad.mit.edu	37	1	16475411	16475411	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:16475411G>A	uc001aya.1	-	3	422	c.285C>T	c.(283-285)TTC>TTT	p.F95F	EPHA2_uc010oca.1_Silent_p.F95F	NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	95	Extracellular (Potential).			IFIELK -> NNFELN (in Ref. 1; AAA53375).	activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	TGAGCTCAATGAAGATACGCT	0.557													11	74					0	0	1	0	0
FBXO42	54455	broad.mit.edu	37	1	16577301	16577301	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:16577301G>A	uc001ayg.2	-	10	2234	c.2018C>T	c.(2017-2019)CCT>CTT	p.P673L	FBXO42_uc001aye.3_Missense_Mutation_p.P391L|FBXO42_uc001ayf.2_Missense_Mutation_p.P580L	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	673										upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		GGTTTCAGGAGGTCCAACCAC	0.463													20	185					0	0	1	0	0
FBXO42	54455	broad.mit.edu	37	1	16577468	16577468	+	Silent	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:16577468A>G	uc001ayg.2	-	10	2067	c.1851T>C	c.(1849-1851)ATT>ATC	p.I617I	FBXO42_uc001aye.3_Silent_p.I335I|FBXO42_uc001ayf.2_Silent_p.I524I	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	617										upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		GGCGGCGAGCAATGGGAGGTA	0.582													15	197					0	0	1	0	0
SPATA21	374955	broad.mit.edu	37	1	16736383	16736383	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:16736383C>T	uc001ayn.2	-	6	783	c.300G>A	c.(298-300)CGG>CGA	p.R100R	SPATA21_uc001ayl.1_RNA|SPATA21_uc010occ.1_Silent_p.R77R	NM_198546	NP_940948	Q7Z572	SPT21_HUMAN	spermatogenesis associated 21	100							calcium ion binding			ovary(2)|breast(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Lung NSC(340;0.00215)|Breast(348;0.00224)|all_lung(284;0.00351)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(227;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;4.2e-05)|Kidney(64;0.000183)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(313;0.0122)|READ - Rectum adenocarcinoma(331;0.0651)		TCGAGGCTCTCCGATGGGAGG	0.662													6	54					0	0	1	0	0
SPATA21	374955	broad.mit.edu	37	1	16748449	16748449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:16748449G>A	uc001ayn.2	-	4	535	c.52C>T	c.(52-54)CCC>TCC	p.P18S	SPATA21_uc001ayl.1_RNA|SPATA21_uc010occ.1_Intron	NM_198546	NP_940948	Q7Z572	SPT21_HUMAN	spermatogenesis associated 21	18							calcium ion binding			ovary(2)|breast(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Lung NSC(340;0.00215)|Breast(348;0.00224)|all_lung(284;0.00351)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(227;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;4.2e-05)|Kidney(64;0.000183)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(313;0.0122)|READ - Rectum adenocarcinoma(331;0.0651)		GGCAGGAAGGGGTTGACTGTC	0.572													21	171					0	0	1	0	0
NBPF1	55672	broad.mit.edu	37	1	16895613	16895613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:16895613G>A	uc009vos.1	-	23	3457	c.2569C>T	c.(2569-2571)CAC>TAC	p.H857Y	NBPF1_uc009vot.1_Missense_Mutation_p.H315Y|NBPF1_uc001ayz.1_Missense_Mutation_p.H315Y|NBPF1_uc010oce.1_Missense_Mutation_p.H586Y	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	857	NBPF 4.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTAATGAGTGAAATGTGCCG	0.502													12	403					0	0	1	0	0
ATP13A2	23400	broad.mit.edu	37	1	17331560	17331560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:17331560G>A	uc001baa.2	-	4	486	c.296C>T	c.(295-297)TCC>TTC	p.S99F	ATP13A2_uc001bab.2_Missense_Mutation_p.S99F|ATP13A2_uc001bac.2_Missense_Mutation_p.S99F	NM_022089	NP_071372	Q9NQ11	AT132_HUMAN	ATPase type 13A2 isoform 1	99	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;0.000147)|Breast(348;0.00104)|Renal(390;0.00145)|Lung NSC(340;0.00566)|all_lung(284;0.00797)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|COAD - Colon adenocarcinoma(227;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;1.99e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)		GAGCTGCCAGGAACTATCCTG	0.632													13	31					0	0	1	0	0
PADI2	11240	broad.mit.edu	37	1	17420061	17420061	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:17420061C>T	uc001baf.2	-	5	611	c.529_splice	c.e5+1	p.D177_splice	PADI2_uc010ocm.1_Intron|PADI2_uc001bag.1_Splice_Site_p.D177_splice	NM_007365	NP_031391	Q9Y2J8	PADI2_HUMAN	peptidyl arginine deiminase, type II						peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(3)|pancreas(1)|central_nervous_system(1)|skin(1)	6		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000422)|Renal(390;0.000518)|all_lung(284;0.000546)|Ovarian(437;0.00671)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;1.49e-05)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)	L-Citrulline(DB00155)	CCTGCTGGCACCTTCCTTGCT	0.627													19	123					0	0	1	0	0
PADI1	29943	broad.mit.edu	37	1	17548825	17548826	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:17548825_17548826AG>TA	uc001bah.1	+	2	225_226	c.133_134AG>TA	c.(133-135)AGC>TAC	p.S45Y		NM_013358	NP_037490	Q9ULC6	PADI1_HUMAN	peptidylarginine deiminase type I	45					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity				0		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	GGTCTCTGGAAGCTCCGGGGTG	0.569													27	78					0	0	1	0	0
PADI1	29943	broad.mit.edu	37	1	17566267	17566267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:17566267C>T	uc001bah.1	+	14	1713	c.1621C>T	c.(1621-1623)CTT>TTT	p.L541F	PADI1_uc010oco.1_Missense_Mutation_p.L98F|PADI1_uc010ocp.1_Missense_Mutation_p.L98F|PADI1_uc010ocq.1_Missense_Mutation_p.L12F|PADI1_uc009vpb.1_5'UTR	NM_013358	NP_037490	Q9ULC6	PADI1_HUMAN	peptidylarginine deiminase type I	541					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity				0		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	GAGAGACAATCTTCATGCACA	0.507													4	19					0	0	1	0	0
PADI3	51702	broad.mit.edu	37	1	17607200	17607200	+	Missense_Mutation	SNP	G	A	A	rs138012325		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:17607200G>A	uc001bai.2	+	15	1710	c.1670G>A	c.(1669-1671)CGG>CAG	p.R557Q		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	557					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	GTGCTGAAGCGGGAGCTGGGC	0.592													22	76					0	0	1	0	0
PADI3	51702	broad.mit.edu	37	1	17607261	17607261	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:17607261G>A	uc001bai.2	+	15	1771	c.1731G>A	c.(1729-1731)AGG>AGA	p.R577R		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	577					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	AGACCGAGAGGAAAAAAGCAA	0.542													7	93					0	0	1	0	0
PADI6	353238	broad.mit.edu	37	1	17714998	17714998	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:17714998G>A	uc001bak.1	+	7	802	c.802G>A	c.(802-804)GAA>AAA	p.E268K		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	260					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	CCCATCTGCCGAATTCTCAGG	0.557													5	23					0	0	1	0	0
PADI6	353238	broad.mit.edu	37	1	17715363	17715363	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:17715363T>G	uc001bak.1	+	8	950	c.950T>G	c.(949-951)GTT>GGT	p.V317G		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	309					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	CCTCTGGAGGTTTACCTGTGC	0.542													7	20					0	0	1	0	0
RCC2	55920	broad.mit.edu	37	1	17743075	17743075	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:17743075G>A	uc001bal.2	-	7	974	c.927C>T	c.(925-927)CCC>CCT	p.P309P	RCC2_uc001bam.2_Silent_p.P309P	NM_001136204	NP_001129676	Q9P258	RCC2_HUMAN	regulator of chromosome condensation 2	309	RCC1 4.				cell division|mitotic prometaphase	chromosome, centromeric region|cytosol|microtubule|nucleolus|spindle					0		Colorectal(325;0.000147)|Breast(348;0.00122)|Renal(390;0.00145)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;7.69e-06)|COAD - Colon adenocarcinoma(227;1.19e-05)|Kidney(64;0.000189)|KIRC - Kidney renal clear cell carcinoma(64;0.00273)|STAD - Stomach adenocarcinoma(196;0.0135)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.19)		CCACTCGCCGGGGAACTAGTT	0.557													5	66					0	0	1	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18807986	18807986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:18807986G>A	uc001bax.2	+	1	563	c.511G>A	c.(511-513)GGA>AGA	p.G171R	KLHDC7A_uc009vpg.2_5'UTR	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	171						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CTCCCCAGCTGGACTCATTGC	0.617													5	52					0	0	1	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808509	18808509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:18808509G>A	uc001bax.2	+	1	1086	c.1034G>A	c.(1033-1035)AGA>AAA	p.R345K	KLHDC7A_uc009vpg.2_Missense_Mutation_p.R127K	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	345	Kelch 1.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GCAGCCGAAAGAGCCGCCTCC	0.677													5	20					0	0	1	0	0
PAX7	5081	broad.mit.edu	37	1	18961014	18961014	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:18961014C>T	uc001bay.2	+	2	901	c.303C>T	c.(301-303)ATC>ATT	p.I101I	PAX7_uc001baz.2_Silent_p.I101I|PAX7_uc010oct.1_Silent_p.I101I	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	101	Paired.				anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		CTGGGGCCATCGGCGGCAGCA	0.637			T	FOXO1A	alveolar rhabdomyosarcoma								20	37					0	0	1	0	0
ALDH4A1	8659	broad.mit.edu	37	1	19213005	19213005	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:19213005G>A	uc001bbb.2	-	4	526	c.250C>T	c.(250-252)CCT>TCT	p.P84S	ALDH4A1_uc010ocu.1_Missense_Mutation_p.P24S|ALDH4A1_uc001bbc.2_Missense_Mutation_p.P84S	NM_170726	NP_733844	P30038	AL4A1_HUMAN	aldehyde dehydrogenase 4A1 isoform a precursor	84					proline biosynthetic process|proline catabolic process	mitochondrial matrix	1-pyrroline-5-carboxylate dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00479)|BRCA - Breast invasive adenocarcinoma(304;3.67e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	NADH(DB00157)	TGGTTAAAAGGCTGAAAGGAG	0.557													9	41					0	0	1	0	0
UBR4	23352	broad.mit.edu	37	1	19447897	19447897	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:19447897G>A	uc001bbi.2	-	68	9931	c.9927C>T	c.(9925-9927)TTC>TTT	p.F3309F	UBR4_uc001bbk.1_Silent_p.F956F	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3309					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CATCCACAAGGAAACTGACTT	0.582													6	44					0	0	1	0	0
UBR4	23352	broad.mit.edu	37	1	19447914	19447914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:19447914G>A	uc001bbi.2	-	68	9914	c.9910C>T	c.(9910-9912)CTC>TTC	p.L3304F	UBR4_uc001bbk.1_Missense_Mutation_p.L951F	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3304					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		ACTTGGAGGAGGAAGTACAGG	0.582													7	38					0	0	1	0	0
UBR4	23352	broad.mit.edu	37	1	19525396	19525396	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:19525396G>A	uc001bbi.2	-	4	409	c.405C>T	c.(403-405)GGC>GGT	p.G135G		NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	135					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CAGTGCACAGGCCCTTGATTA	0.338													4	46					0	0	1	0	0
AKR7A3	22977	broad.mit.edu	37	1	19610571	19610571	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:19610571G>A	uc001bbv.1	-	6	830	c.753C>T	c.(751-753)GCC>GCT	p.A251A		NM_012067	NP_036199	O95154	ARK73_HUMAN	aldo-keto reductase family 7, member A3	251					cellular aldehyde metabolic process	cytosol	aldo-keto reductase (NADP) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;1.78e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|GBM - Glioblastoma multiforme(114;0.00276)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CGGCCTGCAGGGCCTTCTCCA	0.647													8	63					0	0	1	0	0
HTR6	3362	broad.mit.edu	37	1	20005140	20005140	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:20005140G>A	uc001bcl.2	+	2	1262	c.795G>A	c.(793-795)AAG>AAA	p.K265K		NM_000871	NP_000862	P50406	5HT6R_HUMAN	5-hydroxytryptamine (serotonin) receptor 6	265	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	histamine receptor activity|protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;5.81e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.00117)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)	Granisetron(DB00889)|Ondansetron(DB00904)|Sertindole(DB06144)	AGGCCCTGAAGGCCAGCCTGA	0.627													4	61					0	0	1	0	0
RNF186	54546	broad.mit.edu	37	1	20141037	20141037	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:20141037G>A	uc001bcr.2	-	1	735	c.558C>T	c.(556-558)ATC>ATT	p.I186I		NM_019062	NP_061935	Q9NXI6	RN186_HUMAN	ring finger protein 186	186	Helical; (Potential).					integral to membrane	zinc ion binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;7.77e-05)|Kidney(64;0.000162)|GBM - Glioblastoma multiforme(114;0.00036)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GGGCCAGGGCGATGATGAAGG	0.627													7	88					0	0	1	0	0
OTUD3	23252	broad.mit.edu	37	1	20216943	20216943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:20216943G>A	uc001bcs.3	+	2	406	c.287G>A	c.(286-288)AGA>AAA	p.R96K		NM_015207	NP_056022	Q5T2D3	OTUD3_HUMAN	OTU domain containing 3	96	OTU.										0		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000276)|Lung NSC(340;0.000338)|Breast(348;0.000812)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.12e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000142)|Kidney(64;0.000177)|GBM - Glioblastoma multiforme(114;0.000408)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CTCAAGCACAGACAGGAGACA	0.438													5	57					0	0	1	0	0
PLA2G2A	5320	broad.mit.edu	37	1	20304874	20304874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:20304874G>A	uc001bcu.2	-	3	402	c.184C>T	c.(184-186)CGC>TGC	p.R62C	PLA2G2A_uc001bcv.2_Missense_Mutation_p.R62C|PLA2G2A_uc010oda.1_Missense_Mutation_p.R62C|PLA2G2A_uc010odb.1_Missense_Mutation_p.R62C	NM_001161729	NP_001155201	P14555	PA2GA_HUMAN	phospholipase A2, group IIA precursor	62					defense response to Gram-positive bacterium|lipid catabolic process|low-density lipoprotein particle remodeling|phosphatidic acid metabolic process|positive regulation of inflammatory response|positive regulation of macrophage derived foam cell differentiation	endoplasmic reticulum|extracellular space|membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|phospholipid binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000138)|Kidney(64;0.000171)|GBM - Glioblastoma multiforme(114;0.00032)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TGGCCTCACCGATCCGTTGCA	0.607													9	32					0	0	1	0	0
PLA2G5	5322	broad.mit.edu	37	1	20417110	20417110	+	Silent	SNP	C	T	T	rs144012929		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:20417110C>T	uc001bcy.2	+	5	610	c.342C>T	c.(340-342)CTC>CTT	p.L114L	PLA2G5_uc001bcw.2_RNA|PLA2G5_uc001bcx.2_Silent_p.L145L	NM_000929	NP_000920	P39877	PA2G5_HUMAN	phospholipase A2, group V precursor	114					lipid catabolic process	extracellular region	calcium ion binding|calcium-dependent phospholipase A2 activity	p.L114L(1)		skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000249)|Lung NSC(340;0.000287)|Breast(348;0.000812)|Ovarian(437;0.00328)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;8.15e-05)|Kidney(64;0.000184)|GBM - Glioblastoma multiforme(114;0.00089)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0652)		ACCGGAAGCTCGTCTACTGCC	0.567													18	81					0	0	1	0	0
MUL1	79594	broad.mit.edu	37	1	20827452	20827452	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:20827452G>A	uc001bdi.3	-	4	947	c.790C>T	c.(790-792)CTG>TTG	p.L264L		NM_024544	NP_078820	Q969V5	MUL1_HUMAN	mitochondrial ubiquitin ligase activator of NFKB	264	Cytoplasmic (Potential).				activation of caspase activity|activation of JUN kinase activity|induction of apoptosis|mitochondrial fission|mitochondrion localization|negative regulation of cell growth|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to mitochondrial outer membrane|nucleus|peroxisome	identical protein binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|Lung NSC(340;0.00412)|all_lung(284;0.00419)|Breast(348;0.00748)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000137)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.00124)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)		TGCCGCTGCAGATACTGCTTC	0.617													13	56					0	0	1	0	0
KIF17	57576	broad.mit.edu	37	1	21009332	21009332	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:21009332C>T	uc001bdr.3	-	11	2395	c.2277G>A	c.(2275-2277)AAG>AAA	p.K759K	KIF17_uc001bdp.3_Silent_p.K37K|KIF17_uc001bdq.3_Silent_p.K37K|KIF17_uc009vpx.2_Silent_p.K129K|KIF17_uc001bds.3_Silent_p.K759K	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	759	Potential.				microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		GGTCCTTGTTCTTGGCCTGCT	0.602													4	115					0	0	1	0	0
KIF17	57576	broad.mit.edu	37	1	21031351	21031351	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:21031351G>A	uc001bdr.3	-	5	830	c.712C>T	c.(712-714)CTG>TTG	p.L238L	KIF17_uc001bds.3_Silent_p.L238L	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	238	Kinesin-motor.				microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		AGGTCCACCAGGTTCAGCTTG	0.642													8	65					0	0	1	0	0
KIF17	57576	broad.mit.edu	37	1	21036145	21036145	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:21036145C>T	uc001bdr.3	-	4	775	c.657G>A	c.(655-657)GAG>GAA	p.E219E	KIF17_uc001bds.3_Silent_p.E219E	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	219	Kinesin-motor.				microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		CGGCAGACATCTCGATGCTGA	0.602													5	50					0	0	1	0	0
KIF17	57576	broad.mit.edu	37	1	21039976	21039976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:21039976G>A	uc001bdr.3	-	3	569	c.451C>T	c.(451-453)CTT>TTT	p.L151F	KIF17_uc001bds.3_Missense_Mutation_p.L151F	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	151	Kinesin-motor.				microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		TCAGCCCCAAGGAGGTCCCGG	0.582													6	17					0	0	1	0	0
SH2D5	400745	broad.mit.edu	37	1	21048471	21048471	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:21048471G>A	uc001bdt.1	-	9	1459	c.834C>T	c.(832-834)TTC>TTT	p.F278F	SH2D5_uc009vpy.1_Silent_p.F362F|SH2D5_uc001bdu.1_RNA	NM_001103160	NP_001096630	Q6ZV89	SH2D5_HUMAN	SH2 domain containing 5 isoform 2	278	SH2.										0		Colorectal(325;3.46e-05)|all_lung(284;5.32e-05)|Lung NSC(340;5.51e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.17e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000142)|GBM - Glioblastoma multiforme(114;0.000465)|Kidney(64;0.000476)|STAD - Stomach adenocarcinoma(196;0.00303)|KIRC - Kidney renal clear cell carcinoma(64;0.00634)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CCAGGCTGGGGAACTCTGCCG	0.662													6	26					0	0	1	0	0
NBPF3	84224	broad.mit.edu	37	1	21798169	21798170	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:21798169_21798170CC>TT	uc001ber.2	+	5	904_905	c.554_555CC>TT	c.(553-555)GCC>GTT	p.A185V	NBPF3_uc001bes.2_Missense_Mutation_p.A129V|NBPF3_uc009vqb.2_Missense_Mutation_p.A185V|NBPF3_uc010odm.1_Missense_Mutation_p.A115V	NM_032264	NP_115640	Q9H094	NBPF3_HUMAN	neuroblastoma breakpoint family, member 3	185	Potential.					cytoplasm				upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(284;2.16e-05)|Lung NSC(340;2.19e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|OV - Ovarian serous cystadenocarcinoma(117;7.53e-27)|COAD - Colon adenocarcinoma(152;1.18e-05)|GBM - Glioblastoma multiforme(114;3.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000143)|STAD - Stomach adenocarcinoma(196;0.00306)|KIRC - Kidney renal clear cell carcinoma(1967;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CATCTCCAGGCCCTCCTCACTC	0.574													6	127					0	0	1	0	0
RAP1GAP	5909	broad.mit.edu	37	1	21940554	21940554	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:21940554G>A	uc001bex.2	-	8	578	c.320C>T	c.(319-321)GCT>GTT	p.A107V	RAP1GAP_uc001bev.2_Missense_Mutation_p.A107V|RAP1GAP_uc001bew.2_Missense_Mutation_p.A171V|RAP1GAP_uc001bey.2_Missense_Mutation_p.A107V	NM_002885	NP_002876	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein isoform c	107					regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		GCCGAGGGCAGCGTCCAGTGA	0.597													6	17					0	0	1	0	0
HSPG2	3339	broad.mit.edu	37	1	22175423	22175423	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:22175423G>A	uc001bfj.2	-	58	7588	c.7548C>T	c.(7546-7548)GTC>GTT	p.V2516V	HSPG2_uc009vqd.2_Silent_p.V2517V	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	2516	Ig-like C2-type 10.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	TGGTGACAAGGACTGAGGCTT	0.632													5	145					0	0	1	0	0
HSPG2	3339	broad.mit.edu	37	1	22178048	22178048	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:22178048G>A	uc001bfj.2	-	55	7189	c.7149C>T	c.(7147-7149)GTC>GTT	p.V2383V	HSPG2_uc009vqd.2_Silent_p.V2384V	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	2383	Ig-like C2-type 9.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CCTGGTGCCGGACAGGGAGGC	0.662													16	85					0	0	1	0	0
CELA3B	23436	broad.mit.edu	37	1	22310196	22310196	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:22310196C>T	uc001bfk.2	+	5	487	c.372C>T	c.(370-372)ATC>ATT	p.I124I	CELA3B_uc009vqf.2_Intron	NM_007352	NP_031378	P08861	CEL3B_HUMAN	elastase 3B, pancreatic preproprotein	124	Peptidase S1.				cholesterol metabolic process|proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						GCAATGACATCGCCCTCATCA	0.647													10	46					0	0	1	0	0
CELA3A	10136	broad.mit.edu	37	1	22332203	22332203	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:22332203G>A	uc001bfl.2	+	4	295	c.276G>A	c.(274-276)GTG>GTA	p.V92V	CELA3B_uc009vqf.2_Silent_p.V91V	NM_005747	NP_005738	P09093	CEL3A_HUMAN	elastase 3A, pancreatic preproprotein	92	Peptidase S1.				cholesterol metabolic process|digestion|proteolysis		serine-type endopeptidase activity			haematopoietic_and_lymphoid_tissue(1)	1						ACCTTGCTGTGAAGGAGGGCC	0.597											OREG0013211	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	76					0	0	1	0	0
ZBTB40	9923	broad.mit.edu	37	1	22838541	22838541	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:22838541G>A	uc001bft.2	+	12	2886	c.2375G>A	c.(2374-2376)GGT>GAT	p.G792D	ZBTB40_uc001bfu.2_Missense_Mutation_p.G792D|ZBTB40_uc009vqi.1_Missense_Mutation_p.G680D|ZBTB40_uc001bfv.1_Missense_Mutation_p.G421D	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	792					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		CATGGTGCAGGTGGAGAGCCC	0.532													4	55					0	0	1	0	0
ZBTB40	9923	broad.mit.edu	37	1	22850879	22850879	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:22850879C>T	uc001bft.2	+	18	3978	c.3467C>T	c.(3466-3468)TCT>TTT	p.S1156F	ZBTB40_uc001bfu.2_Missense_Mutation_p.S1156F|ZBTB40_uc009vqi.1_Missense_Mutation_p.S1044F	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	1156	C2H2-type 12.				bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		CACCTGGAATCTGAGCACCCA	0.567													11	34					0	0	1	0	0
ZBTB40	9923	broad.mit.edu	37	1	22852806	22852806	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:22852806C>T	uc001bft.2	+	19	4148	c.3637C>T	c.(3637-3639)CAG>TAG	p.Q1213*	ZBTB40_uc001bfu.2_Nonsense_Mutation_p.Q1213*|ZBTB40_uc009vqi.1_Nonsense_Mutation_p.Q1101*	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	1213					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		TCAGGCATCTCAGGCCAGCTC	0.607													26	85					0	0	1	0	0
C1QA	712	broad.mit.edu	37	1	22965756	22965756	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:22965756C>T	uc001bfy.2	+	3	679	c.594C>T	c.(592-594)TTC>TTT	p.F198F	C1QA_uc001bfz.2_Silent_p.F198F	NM_015991	NP_057075	P02745	C1QA_HUMAN	complement component 1, q subcomponent, A chain	198	C1q.				cell-cell signaling|complement activation, classical pathway|innate immune response	collagen|complement component C1 complex					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.41e-27)|Colorectal(126;1.52e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.63e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000541)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.197)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	AGGGGCTCTTCCAGGTGGTGT	0.592													4	95					0	0	1	0	0
C1QB	713	broad.mit.edu	37	1	22987460	22987460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:22987460G>A	uc001bgd.2	+	3	475	c.343G>A	c.(343-345)GAC>AAC	p.D115N		NM_000491	NP_000482	P02746	C1QB_HUMAN	complement component 1, q subcomponent, B chain	115					complement activation, classical pathway|innate immune response	collagen|complement component C1 complex				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.06e-27)|Colorectal(126;1.58e-07)|GBM - Glioblastoma multiforme(114;6.72e-06)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000551)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TGAATCGGGAGACTACAAGGC	0.622													18	59					0	0	1	0	0
C1QB	713	broad.mit.edu	37	1	22987516	22987516	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:22987516C>T	uc001bgd.2	+	3	531	c.399C>T	c.(397-399)CCC>CCT	p.P133P		NM_000491	NP_000482	P02746	C1QB_HUMAN	complement component 1, q subcomponent, B chain	133	C1q.				complement activation, classical pathway|innate immune response	collagen|complement component C1 complex				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.06e-27)|Colorectal(126;1.58e-07)|GBM - Glioblastoma multiforme(114;6.72e-06)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000551)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TCAACGTCCCCCTGCGCCGGG	0.607													19	84					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23191380	23191380	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:23191380C>T	uc009vqj.1	+	5	1123	c.978C>T	c.(976-978)TCC>TCT	p.S326S	EPHB2_uc001bge.2_Silent_p.S326S|EPHB2_uc001bgf.2_Silent_p.S326S|EPHB2_uc010odu.1_Silent_p.S326S|hsa-mir-4253|MI0015860_5'Flank	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	326	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		CCATCCCCTCCGCGCCCCAGG	0.652									Hereditary_Prostate_Cancer				7	85					0	0	1	0	0
LUZP1	7798	broad.mit.edu	37	1	23418836	23418837	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:23418836_23418837GG>AC	uc001bgk.2	-	4	2302_2303	c.1918_1919CC>GT	c.(1918-1920)CCG>GTG	p.P640V	LUZP1_uc010odv.1_Missense_Mutation_p.P640V|LUZP1_uc001bgl.2_Missense_Mutation_p.P640V|LUZP1_uc001bgm.1_Missense_Mutation_p.P640V	NM_033631	NP_361013	Q86V48	LUZP1_HUMAN	leucine zipper protein 1	640						nucleus					0		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Ovarian(437;0.00373)|Breast(348;0.00815)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;4.88e-27)|Colorectal(126;8.36e-08)|COAD - Colon adenocarcinoma(152;4.31e-06)|GBM - Glioblastoma multiforme(114;8.64e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00176)|STAD - Stomach adenocarcinoma(196;0.0146)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0967)|LUSC - Lung squamous cell carcinoma(448;0.199)		GGCTTCATGCGGACTGCTGTCT	0.46													22	145					0	0	1	0	0
HTR1D	3352	broad.mit.edu	37	1	23519807	23519807	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:23519807G>A	uc001bgn.2	-	1	1416	c.906C>T	c.(904-906)ATC>ATT	p.I302I		NM_000864	NP_000855	P28221	5HT1D_HUMAN	5-hydroxytryptamine (serotonin) receptor 1D	302	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|intestine smooth muscle contraction|synaptic transmission	integral to plasma membrane	serotonin receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000779)|all_lung(284;0.00135)|Breast(348;0.0385)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0561)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;4.69e-27)|Colorectal(126;4.86e-08)|COAD - Colon adenocarcinoma(152;2.86e-06)|GBM - Glioblastoma multiforme(114;0.00012)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(1967;0.00122)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.083)|LUSC - Lung squamous cell carcinoma(448;0.185)	Almotriptan(DB00918)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Tegaserod(DB01079)|Ziprasidone(DB00246)|Zolmitriptan(DB00315)	TGATGCCCAGGATTTTAGTGG	0.552													29	88					0	0	1	0	0
MDS2	259283	broad.mit.edu	37	1	23908127	23908127	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:23908127C>T	uc001bhi.3	+	1		c.143C>T								Homo sapiens MDS2 gene.											ovary(2)	2						aaactgggttcctctaagccc	0.348			T	ETV6	MDS								4	16					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24390604	24390604	+	Missense_Mutation	SNP	C	T	T	rs142799431	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:24390604C>T	uc001bin.3	-	30	3743	c.3580G>A	c.(3580-3582)GAT>AAT	p.D1194N	MYOM3_uc001bil.3_Missense_Mutation_p.D87N|MYOM3_uc001bim.3_Missense_Mutation_p.D851N	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	1194	Ig-like C2-type 3.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TCCCCTCGATCGTCAGAAACC	0.478													5	77					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24390630	24390630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:24390630C>T	uc001bin.3	-	30	3717	c.3554G>A	c.(3553-3555)GGA>GAA	p.G1185E	MYOM3_uc001bil.3_Missense_Mutation_p.G78E|MYOM3_uc001bim.3_Missense_Mutation_p.G842E	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	1185	Ig-like C2-type 3.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TCTGTAAATTCCCTTGTCCTT	0.403													6	61					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24411109	24411109	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:24411109G>A	uc001bin.3	-	16	1982	c.1819C>T	c.(1819-1821)CAA>TAA	p.Q607*	MYOM3_uc001bim.3_Nonsense_Mutation_p.Q264*|MYOM3_uc001bio.2_Nonsense_Mutation_p.Q607*|MYOM3_uc001bip.1_Nonsense_Mutation_p.Q264*	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	607	Fibronectin type-III 3.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		GCTTGAACTTGAGCTGGAGGA	0.522													13	214					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24426228	24426228	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:24426228G>A	uc001bin.3	-	6	761	c.598C>T	c.(598-600)CGT>TGT	p.R200C	MYOM3_uc001bio.2_Missense_Mutation_p.R200C|MYOM3_uc001bip.1_5'UTR	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	200	Ig-like C2-type 1.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TTTCCGGCACGAAAGAGGCGG	0.448													9	89					0	0	1	0	0
IL28RA	163702	broad.mit.edu	37	1	24483936	24483936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:24483936G>A	uc001bis.2	-	7	1260	c.1247C>T	c.(1246-1248)CCG>CTG	p.P416L	IL28RA_uc001bir.2_Missense_Mutation_p.P387L|IL28RA_uc001bit.2_3'UTR|IL28RA_uc001biu.2_Missense_Mutation_p.P332L	NM_170743	NP_734464	Q8IU57	I28RA_HUMAN	interleukin 28 receptor, alpha isoform 1	416	Cytoplasmic (Potential).				cytokine-mediated signaling pathway|negative regulation of cell proliferation|regulation of defense response to virus by host	interleukin-28 receptor complex	protein binding|receptor activity				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00117)|all_lung(284;0.00151)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.21e-24)|Colorectal(126;6.61e-08)|COAD - Colon adenocarcinoma(152;3.56e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00918)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.185)		ATCCCCACCCGGCCCTTGGCC	0.602													22	66					0	0	1	0	0
GRHL3	57822	broad.mit.edu	37	1	24674032	24674032	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:24674032C>T	uc001biy.2	+	14	1679	c.1633C>T	c.(1633-1635)CTG>TTG	p.L545L	GRHL3_uc001bix.2_Silent_p.L540L|GRHL3_uc001biz.2_Silent_p.L447L	NM_021180	NP_067003	Q8TE85	GRHL3_HUMAN	sister-of-mammalian grainyhead protein isoform	540					regulation of actin cytoskeleton organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00171)|all_lung(284;0.00226)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;8.72e-25)|Colorectal(126;4.38e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00151)|KIRC - Kidney renal clear cell carcinoma(1967;0.00377)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.143)		CCTGAAGGGGCTGAGGAATGC	0.597													7	116					0	0	1	0	0
NIPAL3	57185	broad.mit.edu	37	1	24768660	24768660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:24768660C>T	uc001bjh.2	+	4	685	c.278C>T	c.(277-279)TCC>TTC	p.S93F	NIPAL3_uc010oek.1_Missense_Mutation_p.S93F|NIPAL3_uc001bjg.2_Missense_Mutation_p.S93F|NIPAL3_uc009vrc.2_Missense_Mutation_p.S11F	NM_020448	NP_065181	Q6P499	NPAL3_HUMAN	NIPA-like domain containing 3	93	Helical; (Potential).					integral to membrane					0						GTGTTCGCCTCCTACGCCTTC	0.637													23	111					0	0	1	0	0
NIPAL3	57185	broad.mit.edu	37	1	24768670	24768670	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:24768670C>T	uc001bjh.2	+	4	695	c.288C>T	c.(286-288)TTC>TTT	p.F96F	NIPAL3_uc010oek.1_Silent_p.F96F|NIPAL3_uc001bjg.2_Silent_p.F96F|NIPAL3_uc009vrc.2_Silent_p.F14F	NM_020448	NP_065181	Q6P499	NPAL3_HUMAN	NIPA-like domain containing 3	96	Helical; (Potential).					integral to membrane					0						CCTACGCCTTCGCGCCGCTGT	0.632													25	105					0	0	1	0	0
RUNX3	864	broad.mit.edu	37	1	25229042	25229042	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:25229042G>A	uc001bjq.2	-	5	1230	c.819C>T	c.(817-819)GCC>GCT	p.A273A	RUNX3_uc010oen.1_Silent_p.A220A|RUNX3_uc009vrj.2_Silent_p.A287A|RUNX3_uc001bjr.2_Silent_p.A287A|RUNX3_uc001bjs.2_RNA	NM_004350	NP_004341	Q13761	RUNX3_HUMAN	runt-related transcription factor 3 isoform 2	273	Pro/Ser/Thr-rich.				cell proliferation|induction of apoptosis|negative regulation of cell cycle|negative regulation of epithelial cell proliferation|protein phosphorylation|transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00131)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0419)|OV - Ovarian serous cystadenocarcinoma(117;2.85e-26)|Colorectal(126;4.35e-08)|COAD - Colon adenocarcinoma(152;1.92e-06)|GBM - Glioblastoma multiforme(114;0.000102)|STAD - Stomach adenocarcinoma(196;0.000766)|KIRC - Kidney renal clear cell carcinoma(1967;0.00148)|BRCA - Breast invasive adenocarcinoma(304;0.00173)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.136)		CAGCTGACATGGCCCCGGGAT	0.672													24	128					0	0	1	0	0
RHD	6007	broad.mit.edu	37	1	25611115	25611115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:25611115C>T	uc001bjz.2	+	2	258	c.200C>T	c.(199-201)TCG>TTG	p.S67L	RHD_uc010oep.1_Missense_Mutation_p.S67L|RHD_uc001bkc.2_Missense_Mutation_p.S67L|RHD_uc009vrm.2_5'UTR|RHD_uc001bka.2_Missense_Mutation_p.S67L|RHD_uc001bkb.2_Missense_Mutation_p.S67L|RHD_uc009vrn.2_Missense_Mutation_p.S67L|RHD_uc009vro.2_Missense_Mutation_p.S67L|RHD_uc009vrp.2_Missense_Mutation_p.S67L	NM_016124	NP_057208	Q02161	RHD_HUMAN	Rh blood group D antigen isoform 1	67						integral to plasma membrane				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;7.39e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;6.43e-07)|STAD - Stomach adenocarcinoma(196;0.000332)|BRCA - Breast invasive adenocarcinoma(304;0.000438)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|GBM - Glioblastoma multiforme(114;0.000908)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TTCCTCACCTCGAGTTTCCGG	0.607													9	85					0	0	1	0	0
TMEM50A	23585	broad.mit.edu	37	1	25669550	25669550	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:25669550C>T	uc001bke.2	+	3	342	c.192C>T	c.(190-192)ACC>ACT	p.T64T	TMEM50A_uc010oeq.1_Silent_p.T64T|TMEM50A_uc009vrr.2_Intron|TMEM50A_uc009vrs.2_Intron	NM_014313	NP_055128	O95807	TM50A_HUMAN	small membrane protein 1	64	Helical; (Potential).					endoplasmic reticulum|integral to membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;3.47e-27)|Colorectal(126;1.1e-08)|COAD - Colon adenocarcinoma(152;7.48e-07)|STAD - Stomach adenocarcinoma(196;0.00035)|BRCA - Breast invasive adenocarcinoma(304;0.00047)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|GBM - Glioblastoma multiforme(114;0.00106)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.204)		TTATAGCAACCATAGCCTTCC	0.348													5	71					0	0	1	0	0
RHCE	6006	broad.mit.edu	37	1	25747182	25747182	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:25747182G>A	uc001bkf.2	-	1	182	c.96C>T	c.(94-96)ACC>ACT	p.T32T	RHCE_uc001bkg.2_Silent_p.T32T|RHCE_uc001bkh.2_Silent_p.T32T|RHCE_uc001bki.2_Silent_p.T32T|RHCE_uc001bkj.2_Intron	NM_020485	NP_065231	P18577	RHCE_HUMAN	Rhesus blood group, CcEe antigens isoform 1	32	Helical; (Potential).					integral to plasma membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0426)|OV - Ovarian serous cystadenocarcinoma(117;2.12e-27)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|STAD - Stomach adenocarcinoma(196;0.00035)|KIRC - Kidney renal clear cell carcinoma(1967;0.000769)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|GBM - Glioblastoma multiforme(114;0.00458)|READ - Rectum adenocarcinoma(331;0.0649)		CGTCATAGTGGGTAAAAAAAT	0.532													14	192					0	0	1	0	0
MAN1C1	57134	broad.mit.edu	37	1	26104628	26104628	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:26104628C>T	uc001bkm.2	+	9	1620	c.1290C>T	c.(1288-1290)CCC>CCT	p.P430P	MAN1C1_uc009vry.1_Silent_p.P250P|MAN1C1_uc001bkn.2_5'Flank	NM_020379	NP_065112	Q9NR34	MA1C1_HUMAN	mannosidase, alpha, class 1C, member 1	430	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(1)	1		Colorectal(325;3.78e-05)|Lung NSC(340;0.000181)|all_lung(284;0.000245)|Renal(390;0.000714)|Ovarian(437;0.00159)|Breast(348;0.0156)|Myeloproliferative disorder(586;0.0257)|all_neural(195;0.0515)|Esophageal squamous(538;0.232)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0574)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.15e-07)|COAD - Colon adenocarcinoma(152;4.31e-06)|STAD - Stomach adenocarcinoma(196;0.00125)|BRCA - Breast invasive adenocarcinoma(304;0.00141)|KIRC - Kidney renal clear cell carcinoma(1967;0.00146)|GBM - Glioblastoma multiforme(114;0.0149)|READ - Rectum adenocarcinoma(331;0.0803)		ATGTCTCTCCCGGGGGGCTGA	0.642													10	56					0	0	1	0	0
PAFAH2	5051	broad.mit.edu	37	1	26314785	26314785	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:26314785G>A	uc001bld.3	-	4	458	c.278C>T	c.(277-279)CCC>CTC	p.P93L	PAFAH2_uc001ble.3_Missense_Mutation_p.P93L	NM_000437	NP_000428	Q99487	PAFA2_HUMAN	platelet-activating factor acetylhydrolase 2	93					lipid catabolic process	cytoplasm	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding			ovary(2)	2		Colorectal(325;3.47e-05)|Lung NSC(340;6.23e-05)|all_lung(284;9.48e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-25)|Colorectal(126;3.57e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00155)|GBM - Glioblastoma multiforme(114;0.00717)|READ - Rectum adenocarcinoma(331;0.0649)		TGTCTTAAAGGGGCCATTCCA	0.522													9	139					0	0	1	0	0
CNKSR1	10256	broad.mit.edu	37	1	26515325	26515325	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:26515325C>T	uc001bln.3	+	20	1832	c.1774C>T	c.(1774-1776)CTA>TTA	p.L592L	CNKSR1_uc001blm.3_Silent_p.L585L|CNKSR1_uc009vsd.2_Silent_p.L327L|CNKSR1_uc009vse.2_Silent_p.L327L|CNKSR1_uc001blo.2_Silent_p.L327L|CATSPER4_uc010oey.1_5'Flank|CATSPER4_uc010oez.1_5'Flank|CATSPER4_uc009vsf.2_5'Flank	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	592					Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		CGTGTCCCTCCTAGGCCAGCC	0.642													26	81					0	0	1	0	0
ZNF683	257101	broad.mit.edu	37	1	26691313	26691313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:26691313C>T	uc001bmg.1	-	4	842	c.724G>A	c.(724-726)GAG>AAG	p.E242K	ZNF683_uc001bmh.1_Missense_Mutation_p.E242K|ZNF683_uc009vsj.1_Missense_Mutation_p.E242K	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	242					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		TGCCCCAGCTCATTGACCATC	0.637													26	90					0	0	1	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26898006	26898006	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:26898006C>T	uc001bmr.1	+	18	1820	c.1657C>T	c.(1657-1659)CTG>TTG	p.L553L	RPS6KA1_uc010ofe.1_Silent_p.L461L|RPS6KA1_uc010off.1_Silent_p.L537L|RPS6KA1_uc001bms.1_Silent_p.L562L|RPS6KA1_uc009vsl.1_Silent_p.L396L	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	553	Protein kinase 2.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		TCCCGAGTGCCTGCGCATCTG	0.582													5	42					0	0	1	0	0
SYTL1	84958	broad.mit.edu	37	1	27676943	27676943	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:27676943G>A	uc001bnw.1	+	10	1139	c.972G>A	c.(970-972)CGG>CGA	p.R324R	SYTL1_uc001bnv.1_Silent_p.R312R|SYTL1_uc009vsu.1_Silent_p.R312R|SYTL1_uc001bnx.2_3'UTR|SYTL1_uc009vsv.1_Silent_p.R324R	NM_032872	NP_116261	Q8IYJ3	SYTL1_HUMAN	synaptotagmin-like 1	324	C2 1.				exocytosis|intracellular protein transport	extrinsic to plasma membrane|melanosome|soluble fraction	neurexin binding|Rab GTPase binding			ovary(1)	1		Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.0115)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0908)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.5e-28)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.0013)|KIRC - Kidney renal clear cell carcinoma(1967;0.00158)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		TGAAGAAACGGAATCTGAATC	0.597													12	52					0	0	1	0	0
AHDC1	27245	broad.mit.edu	37	1	27877702	27877702	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:27877702G>A	uc009vsy.2	-	6	1894	c.925C>T	c.(925-927)CTG>TTG	p.L309L	AHDC1_uc009vsz.1_Silent_p.L309L|AHDC1_uc001boh.1_Silent_p.L182L	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	309	Pro-rich.						DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		AGGCCCGGCAGCCCCAGAGGA	0.687													12	21					0	0	1	0	0
FGR	2268	broad.mit.edu	37	1	27943473	27943473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:27943473C>T	uc001boj.2	-	5	723	c.577G>A	c.(577-579)GAT>AAT	p.D193N	FGR_uc001boi.2_5'Flank|FGR_uc001bok.2_Missense_Mutation_p.D193N|FGR_uc001bol.2_Missense_Mutation_p.D193N|FGR_uc001bom.2_Missense_Mutation_p.D193N	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	193	SH2.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		TTCACATGATCGCCTCTGGTC	0.552													25	73					0	0	1	0	0
FGR	2268	broad.mit.edu	37	1	27943796	27943796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:27943796C>T	uc001boj.2	-	4	586	c.440G>A	c.(439-441)GGA>GAA	p.G147E	FGR_uc001boi.2_5'Flank|FGR_uc001bok.2_Missense_Mutation_p.G147E|FGR_uc001bol.2_Missense_Mutation_p.G147E|FGR_uc001bom.2_Missense_Mutation_p.G147E	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	147	SH2.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		CCCAATCTTTCCAAAGTACCA	0.493													4	60					0	0	1	0	0
EYA3	2140	broad.mit.edu	37	1	28339627	28339627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:28339627G>A	uc001bpi.1	-	9	929	c.764C>T	c.(763-765)TCC>TTC	p.S255F	EYA3_uc010ofs.1_Missense_Mutation_p.S202F|EYA3_uc010oft.1_Missense_Mutation_p.S209F|EYA3_uc001bpj.2_Missense_Mutation_p.S209F|EYA3_uc001bpk.1_RNA|EYA3_uc010ofu.1_RNA	NM_001990	NP_001981	Q99504	EYA3_HUMAN	eyes absent 3	255					anatomical structure morphogenesis|double-strand break repair|histone dephosphorylation|multicellular organismal development|positive regulation of DNA repair|regulation of transcription, DNA-dependent|response to ionizing radiation|transcription, DNA-dependent|visual perception	cytoplasm	metal ion binding|protein binding|protein tyrosine phosphatase activity			ovary(2)|skin(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000414)|Lung NSC(340;0.000432)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0484)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;2.8e-06)|STAD - Stomach adenocarcinoma(196;0.00364)|KIRC - Kidney renal clear cell carcinoma(1967;0.00378)|BRCA - Breast invasive adenocarcinoma(304;0.00718)|READ - Rectum adenocarcinoma(331;0.0642)		CTTACCAGAGGAAAGTCTCTG	0.473													8	56					0	0	1	0	0
PTAFR	5724	broad.mit.edu	37	1	28477077	28477077	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:28477077G>A	uc001bpl.2	-	2	583	c.456C>T	c.(454-456)TTC>TTT	p.F152F	PTAFR_uc001bpm.3_Silent_p.F152F|PTAFR_uc009vte.2_Silent_p.F152F	NM_000952	NP_000943	P25105	PTAFR_HUMAN	platelet-activating factor receptor	152	Helical; Name=4; (Potential).				chemotaxis|inflammatory response|interferon-gamma-mediated signaling pathway|phosphatidylinositol-mediated signaling	integral to plasma membrane|nucleus	phospholipid binding|platelet activating factor receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00715)|all_lung(284;0.00732)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.215)|OV - Ovarian serous cystadenocarcinoma(117;6e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|STAD - Stomach adenocarcinoma(196;0.00678)|READ - Rectum adenocarcinoma(331;0.0649)		CCAGGATGAGGAAGTAGGATG	0.577													6	68					0	0	1	0	0
OPRD1	4985	broad.mit.edu	37	1	29189312	29189312	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:29189312G>A	uc001brf.1	+	3	878	c.636G>A	c.(634-636)GTG>GTA	p.V212V		NM_000911	NP_000902	P41143	OPRD_HUMAN	opioid receptor, delta 1	212	Extracellular (Potential).				immune response|protein import into nucleus, translocation	integral to plasma membrane	delta-opioid receptor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.000947)|all_lung(284;0.00131)|Renal(390;0.00758)|Breast(348;0.00765)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;1.29e-07)|COAD - Colon adenocarcinoma(152;7.51e-06)|STAD - Stomach adenocarcinoma(196;0.00306)|BRCA - Breast invasive adenocarcinoma(304;0.0241)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)	Butorphanol(DB00611)|Codeine(DB00318)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Loperamide(DB00836)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pimozide(DB01100)|Propoxyphene(DB00647)	GGGACACGGTGACCAAGATCT	0.637													10	43					0	0	1	0	0
PTPRU	10076	broad.mit.edu	37	1	29644278	29644278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:29644278C>T	uc001bru.2	+	26	3672	c.3562C>T	c.(3562-3564)CCG>TCG	p.P1188S	PTPRU_uc001brv.2_Missense_Mutation_p.P1184S|PTPRU_uc001brw.2_Missense_Mutation_p.P1178S|PTPRU_uc009vtq.2_Missense_Mutation_p.P1184S|PTPRU_uc009vtr.2_Missense_Mutation_p.P1175S|PTPRU_uc001brx.2_5'Flank	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	1188	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		CTCGGTCACCCCGCCGCTGGA	0.557													18	53					0	0	1	0	0
PUM1	9698	broad.mit.edu	37	1	31438930	31438930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:31438930G>A	uc001bsi.1	-	13	2098	c.1985C>T	c.(1984-1986)TCC>TTC	p.S662F	PUM1_uc001bsf.1_Missense_Mutation_p.S328F|PUM1_uc001bsg.1_Missense_Mutation_p.S475F|PUM1_uc001bsh.1_Missense_Mutation_p.S662F|PUM1_uc001bsj.1_Missense_Mutation_p.S636F|PUM1_uc010oga.1_Missense_Mutation_p.S518F|PUM1_uc001bsk.1_Missense_Mutation_p.S698F|PUM1_uc010ogb.1_Missense_Mutation_p.S603F	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	662	Ser-rich.				cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		AGAGCCCTGGGAGAAGAGGGA	0.488													14	102					0	0	1	0	0
HCRTR1	3061	broad.mit.edu	37	1	32084964	32084964	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:32084964C>T	uc009vtx.2	+	3	556	c.171C>T	c.(169-171)TTC>TTT	p.F57F	HCRTR1_uc001btb.2_Intron|HCRTR1_uc001btc.3_Missense_Mutation_p.S31L|HCRTR1_uc001btd.2_Silent_p.F57F|HCRTR1_uc010ogl.1_Silent_p.F57F	NM_001525	NP_001516	O43613	OX1R_HUMAN	orexin receptor 1	57	Helical; Name=1; (Potential).				feeding behavior|neuropeptide signaling pathway|synaptic transmission	integral to plasma membrane				ovary(1)	1		Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.053)		TGGCTGTGTTCGTCGTGGCCC	0.587													11	126					0	0	1	0	0
COL16A1	1307	broad.mit.edu	37	1	32163542	32163542	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:32163542G>A	uc001btk.1	-	6	987	c.622C>T	c.(622-624)CTA>TTA	p.L208L	COL16A1_uc001btj.1_Silent_p.L37L|COL16A1_uc001btl.3_Silent_p.L208L	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	208	TSP N-terminal.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		TCCAAGCCTAGAAATACATGG	0.567													6	76					0	0	1	0	0
BAI2	576	broad.mit.edu	37	1	32221700	32221700	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:32221700G>A	uc001btn.2	-	4	1092	c.738C>T	c.(736-738)ACC>ACT	p.T246T	BAI2_uc010ogp.1_Silent_p.T234T|BAI2_uc010ogq.1_Silent_p.T246T|BAI2_uc001bto.2_Silent_p.T246T|BAI2_uc001btq.1_Silent_p.T234T|BAI2_uc010ogr.1_Silent_p.T234T	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	246	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		CATTGGACAGGGTGTGGGCAG	0.667													11	120					0	0	1	0	0
BAI2	576	broad.mit.edu	37	1	32221723	32221723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:32221723G>A	uc001btn.2	-	4	1069	c.715C>T	c.(715-717)CCA>TCA	p.P239S	BAI2_uc010ogp.1_Missense_Mutation_p.P227S|BAI2_uc010ogq.1_Missense_Mutation_p.P239S|BAI2_uc001bto.2_Missense_Mutation_p.P239S|BAI2_uc001btq.1_Missense_Mutation_p.P227S|BAI2_uc010ogr.1_Missense_Mutation_p.P227S	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	239	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		GGAGGGCCTGGAGATGTGGTG	0.701													10	73					0	0	1	0	0
SPOCD1	90853	broad.mit.edu	37	1	32262225	32262225	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:32262225T>A	uc001bts.1	-	10	2295	c.2237A>T	c.(2236-2238)GAC>GTC	p.D746V	SPOCD1_uc001btt.2_Missense_Mutation_p.D52V|SPOCD1_uc001btu.2_Missense_Mutation_p.D746V|SPOCD1_uc001btv.2_Missense_Mutation_p.D239V|SPOCD1_uc001btw.1_Missense_Mutation_p.D90V	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	746					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		CTGGTCCATGTCCCGCTGAAT	0.358													19	145					0	0	1	0	0
SPOCD1	90853	broad.mit.edu	37	1	32279990	32279990	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:32279990G>A	uc001bts.1	-	2	1003	c.945C>T	c.(943-945)CTC>CTT	p.L315L	SPOCD1_uc001btu.2_Silent_p.L315L|SPOCD1_uc001btv.2_Intron	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	315					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		CAGCTGAACTGAGGGACTCCC	0.637													5	27					0	0	1	0	0
KPNA6	23633	broad.mit.edu	37	1	32636340	32636340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:32636340G>A	uc001bug.2	+	14	1544	c.1456G>A	c.(1456-1458)GAG>AAG	p.E486K	KPNA6_uc001buh.2_Missense_Mutation_p.E261K|KPNA6_uc010ogx.1_Missense_Mutation_p.E483K|KPNA6_uc010ogy.1_Missense_Mutation_p.E491K|KPNA6_uc009vtz.2_Missense_Mutation_p.E381K	NM_012316	NP_036448	O60684	IMA7_HUMAN	karyopherin alpha 6	486	ARM 10; atypical.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				CCAGAGCCACGAGAACCAGGA	0.478													15	59					0	0	1	0	0
LCK	3932	broad.mit.edu	37	1	32751115	32751115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:32751115G>A	uc001bux.2	+	13	1466	c.1328G>A	c.(1327-1329)GGG>GAG	p.G443E	LCK_uc001buy.2_Missense_Mutation_p.G443E|LCK_uc001buz.2_Missense_Mutation_p.G473E|LCK_uc001bva.2_Missense_Mutation_p.G450E	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	443	Protein kinase.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	CAACCCGTAGGGATGACCAAC	0.448			T	TRB@	T-ALL								14	98					0	0	1	0	0
BSDC1	55108	broad.mit.edu	37	1	32842335	32842335	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:32842335G>A	uc001bvh.3	-	9	731	c.684C>T	c.(682-684)CTC>CTT	p.L228L	BSDC1_uc010ohg.1_Silent_p.L245L|BSDC1_uc010ohh.1_Silent_p.L172L|BSDC1_uc010ohi.1_Silent_p.L133L|BSDC1_uc001bvg.3_RNA|BSDC1_uc001bvj.2_Silent_p.L124L|BSDC1_uc001bvi.2_Silent_p.L245L	NM_018045	NP_060515	Q9NW68	BSDC1_HUMAN	BSD domain containing 1 isoform b	228							protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				AAATGCCCATGAGCTCCTCTG	0.512													7	36					0	0	1	0	0
RBBP4	5928	broad.mit.edu	37	1	33134452	33134452	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:33134452C>T	uc001bvr.2	+	5	756	c.597C>T	c.(595-597)GAC>GAT	p.D199D	RBBP4_uc001bvs.2_Silent_p.D198D|RBBP4_uc010ohj.1_5'UTR|RBBP4_uc010ohk.1_Silent_p.D164D	NM_005610	NP_005601	Q09028	RBBP4_HUMAN	retinoblastoma binding protein 4 isoform a	199	WD 2.				cell cycle|CenH3-containing nucleosome assembly at centromere|DNA replication|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|ESC/E(Z) complex|NuRD complex|NURF complex|Sin3 complex	histone binding|histone deacetylase binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)				CTTCAGATGACCATGTGTGTA	0.458													4	61					0	0	1	0	0
KIAA1522	57648	broad.mit.edu	37	1	33236644	33236645	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:33236644_33236645CC>TT	uc001bvv.2	+	6	1823_1824	c.1687_1688CC>TT	c.(1687-1689)CCT>TTT	p.P563F	KIAA1522_uc001bvu.1_Missense_Mutation_p.P622F|KIAA1522_uc010ohm.1_Missense_Mutation_p.P574F|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	563	Pro-rich.										0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				TCTTCGCTCCCCTGGGGCCTCC	0.649													7	103					0	0	1	0	0
YARS	8565	broad.mit.edu	37	1	33245804	33245804	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:33245804G>A	uc001bvy.1	-	11	2004	c.1216C>T	c.(1216-1218)CTG>TTG	p.L406L	YARS_uc001bvw.1_Silent_p.L66L|YARS_uc001bvx.1_Silent_p.L57L	NM_003680	NP_003671	P54577	SYYC_HUMAN	tyrosyl-tRNA synthetase	406	tRNA-binding.				apoptosis|tyrosyl-tRNA aminoacylation	cytosol|extracellular space|nucleus|soluble fraction	ATP binding|interleukin-8 receptor binding|signal transducer activity|tRNA binding|tyrosine-tRNA ligase activity			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)			L-Tyrosine(DB00135)	AACTGTACCAGGCCGCTCACC	0.577													11	196					0	0	1	0	0
YARS	8565	broad.mit.edu	37	1	33252005	33252005	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:33252005G>A	uc001bvy.1	-	8	1652	c.864C>T	c.(862-864)ACC>ACT	p.T288T	YARS_uc001bvx.1_5'Flank	NM_003680	NP_003671	P54577	SYYC_HUMAN	tyrosyl-tRNA synthetase	288					apoptosis|tyrosyl-tRNA aminoacylation	cytosol|extracellular space|nucleus|soluble fraction	ATP binding|interleukin-8 receptor binding|signal transducer activity|tRNA binding|tyrosine-tRNA ligase activity			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)			L-Tyrosine(DB00135)	AAGCTGTGTAGGTTTTGTTTC	0.398													4	47					0	0	1	0	0
ADC	113451	broad.mit.edu	37	1	33558919	33558919	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:33558919C>T	uc001bwr.2	+	7	1076	c.489C>T	c.(487-489)TCC>TCT	p.S163S	ADC_uc001bws.2_Silent_p.S163S|ADC_uc009vue.2_Silent_p.S163S|ADC_uc001bwt.1_Silent_p.S68S|ADC_uc001bwu.2_Silent_p.S68S|ADC_uc001bwv.2_Silent_p.S68S|ADC_uc001bww.2_Silent_p.S68S|ADC_uc001bwx.1_Silent_p.S140S|ADC_uc001bwz.1_Silent_p.S163S|ADC_uc009vuf.1_Intron|ADC_uc001bwy.1_Silent_p.S12S|ADC_uc009vug.2_Silent_p.S163S	NM_052998	NP_443724	Q96A70	ADC_HUMAN	ODC antizyme inhibitor-2	163					polyamine biosynthetic process|spermatogenesis	cytosol	arginine decarboxylase activity			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)			L-Arginine(DB00125)|Pyridoxal Phosphate(DB00114)	ACTCCCACTCCCTGAGCTGCC	0.557													11	60					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	33985459	33985459	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:33985459G>A	uc001bxn.1	-	68	10286	c.10257C>T	c.(10255-10257)TTC>TTT	p.F3419F	CSMD2_uc001bxm.1_Silent_p.F3563F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3419	Helical; (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGAGGGCGATGAAAGGCACCA	0.602													4	53					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	33985519	33985519	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:33985519G>A	uc001bxn.1	-	68	10226	c.10197C>T	c.(10195-10197)TCC>TCT	p.S3399S	CSMD2_uc001bxm.1_Silent_p.S3543S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3399	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGCGGCCAATGGACTCGGGGT	0.567													11	27					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	33990641	33990641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:33990641G>A	uc001bxn.1	-	65	9834	c.9805C>T	c.(9805-9807)CCT>TCT	p.P3269S	CSMD2_uc001bxm.1_Missense_Mutation_p.P3413S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3269	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACATCCCCAGGAACTAGAGGA	0.507													37	117					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34008417	34008417	+	Silent	SNP	G	A	A	rs138523089	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:34008417G>A	uc001bxn.1	-	57	8777	c.8748C>T	c.(8746-8748)ATC>ATT	p.I2916I	CSMD2_uc001bxm.1_Silent_p.I3060I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2916	Sushi 21.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACTCATAGACGATAGAGCTGG	0.542													4	54					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34015871	34015872	+	Missense_Mutation	DNP	CC	TT	TT	rs149704396	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:34015871_34015872CC>TT	uc001bxn.1	-	55	8419_8420	c.8390_8391GG>AA	c.(8389-8391)CGG>CAA	p.R2797Q	CSMD2_uc001bxm.1_Missense_Mutation_p.R2941Q	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2797	Sushi 19.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGCAGCTGTACCGCACCACTGC	0.599													10	65					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34015943	34015943	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:34015943G>A	uc001bxn.1	-	55	8348	c.8319C>T	c.(8317-8319)TCC>TCT	p.S2773S	CSMD2_uc001bxm.1_Silent_p.S2917S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2773	Sushi 19.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GATGGCCACAGGACACCACTG	0.562													11	33					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34049413	34049413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:34049413C>T	uc001bxn.1	-	48	7104	c.7075G>A	c.(7075-7077)GAG>AAG	p.E2359K	CSMD2_uc001bxm.1_Missense_Mutation_p.E2357K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2359	CUB 14.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GTCAGAAGCTCATTTGTTGGA	0.512													11	57					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34070913	34070913	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:34070913C>T	uc001bxn.1	-	43	6536	c.6507G>A	c.(6505-6507)CGG>CGA	p.R2169R	CSMD2_uc001bxm.1_Silent_p.R2167R|CSMD2_uc001bxo.1_Silent_p.R1040R	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2169	Sushi 12.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGTCCCAGTTCCGGTTGGTGC	0.587													4	36					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34071533	34071533	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:34071533C>T	uc001bxn.1	-	42	6308	c.6279G>A	c.(6277-6279)GAG>GAA	p.E2093E	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxo.1_Intron	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2093	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TTCTTTCCAACTCCGAGAGAT	0.403													10	51					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34090197	34090197	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:34090197G>A	uc001bxn.1	-	35	5456	c.5427C>T	c.(5425-5427)TCC>TCT	p.S1809S	CSMD2_uc001bxm.1_Silent_p.S1849S|CSMD2_uc001bxo.1_Silent_p.S722S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1809	CUB 11.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGAAGCCAGGGGACAGGATGG	0.657													14	84					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34112369	34112369	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:34112369G>A	uc001bxn.1	-	29	4562	c.4533C>T	c.(4531-4533)CTC>CTT	p.L1511L	CSMD2_uc001bxm.1_Silent_p.L1551L|CSMD2_uc001bxo.1_Silent_p.L424L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1511	CUB 9.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGCTTCCTATGAGAGGGCTGA	0.567													8	18					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34158556	34158556	+	Silent	SNP	G	A	A	rs142510996		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:34158556G>A	uc001bxn.1	-	25	3935	c.3906C>T	c.(3904-3906)ATC>ATT	p.I1302I	CSMD2_uc001bxm.1_Silent_p.I1342I|CSMD2_uc001bxo.1_Silent_p.I215I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1302	CUB 8.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCTCTGCTTCGATGGTCCAGA	0.567													5	147					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34182037	34182037	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:34182037C>T	uc001bxn.1	-	20	2975	c.2946G>A	c.(2944-2946)GAG>GAA	p.E982E	CSMD2_uc001bxm.1_Silent_p.E1022E	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	982	Extracellular (Potential).|CUB 6.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGCTGCCGTTCTCAGTGATGA	0.582													4	53					0	0	1	0	0
C1orf94	84970	broad.mit.edu	37	1	34684359	34684359	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:34684359T>A	uc001bxs.3	+	7	1623	c.1224T>A	c.(1222-1224)TTT>TTA	p.F408L	C1orf94_uc001bxt.2_Missense_Mutation_p.F598L	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	408							protein binding				0		Myeloproliferative disorder(586;0.0393)				GCATAAACTTTTAGATCTCCT	0.502													11	47					0	0	1	0	0
GJB4	127534	broad.mit.edu	37	1	35227422	35227422	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:35227422C>T	uc001bxv.1	+	2	937	c.567C>T	c.(565-567)TTC>TTT	p.F189F	GJB4_uc001bxw.3_Silent_p.F189F	NM_153212	NP_694944	Q9NTQ9	CXB4_HUMAN	gap junction protein, beta 4	189	Helical; (Potential).				cell communication	connexon complex|integral to membrane	gap junction channel activity			ovary(2)|central_nervous_system(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				TCACCTACTTCATGGTGACCA	0.602													17	64					0	0	1	0	0
ZMYM4	9202	broad.mit.edu	37	1	35863062	35863062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:35863062C>T	uc001byt.2	+	20	3195	c.3115C>T	c.(3115-3117)CCC>TCC	p.P1039S	ZMYM4_uc009vuu.2_Missense_Mutation_p.P1007S|ZMYM4_uc001byu.2_Missense_Mutation_p.P715S|ZMYM4_uc009vuv.2_Missense_Mutation_p.P778S	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	1039					multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AGAAAAGCTTCCCACACATCC	0.398													4	41					0	0	1	0	0
KIAA0319L	79932	broad.mit.edu	37	1	35936467	35936467	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:35936467C>T	uc001byx.2	-	6	1368	c.1110G>A	c.(1108-1110)TCG>TCA	p.S370S	KIAA0319L_uc010ohv.1_Silent_p.S12S|KIAA0319L_uc010ohw.1_Intron|KIAA0319L_uc001byz.2_Silent_p.S370S|KIAA0319L_uc010ohx.1_Intron	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	370	PKD 1.|Extracellular (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AATTCACCTTCGATAGTTTGA	0.403													15	66					0	0	1	0	0
NCDN	23154	broad.mit.edu	37	1	36026527	36026527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:36026527C>T	uc001bza.2	+	4	902	c.775C>T	c.(775-777)CGG>TGG	p.R259W	KIAA0319L_uc010ohw.1_5'Flank|NCDN_uc001bzb.2_Missense_Mutation_p.R259W|NCDN_uc001bzc.2_Missense_Mutation_p.R242W	NM_001014839	NP_001014839	Q9UBB6	NCDN_HUMAN	neurochondrin isoform 1	259					neuron projection development	cytosol|dendrite|neuronal cell body				large_intestine(2)|pancreas(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TGAATGCTACCGGGATCTGCA	0.632													9	96					0	0	1	0	0
NCDN	23154	broad.mit.edu	37	1	36026844	36026844	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:36026844C>T	uc001bza.2	+	4	1219	c.1092C>T	c.(1090-1092)CTC>CTT	p.L364L	NCDN_uc001bzb.2_Silent_p.L364L|NCDN_uc001bzc.2_Silent_p.L347L	NM_001014839	NP_001014839	Q9UBB6	NCDN_HUMAN	neurochondrin isoform 1	364					neuron projection development	cytosol|dendrite|neuronal cell body				large_intestine(2)|pancreas(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AGGTGCAGCTCGTGAGCGTCA	0.597													4	55					0	0	1	0	0
CLSPN	63967	broad.mit.edu	37	1	36205107	36205107	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:36205107T>C	uc001bzi.2	-	19	3247	c.3167A>G	c.(3166-3168)GAT>GGT	p.D1056G	CLSPN_uc009vux.2_Missense_Mutation_p.D992G	NM_022111	NP_071394	Q9HAW4	CLSPN_HUMAN	claspin	1056					activation of protein kinase activity|cell cycle|cellular component disassembly involved in apoptosis|DNA repair|DNA replication|G2/M transition DNA damage checkpoint|mitotic cell cycle DNA replication checkpoint|peptidyl-serine phosphorylation	nucleoplasm	anaphase-promoting complex binding|DNA binding			breast(2)|ovary(2)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)	8		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CTCTGCCTCATCCTCCAGGTA	0.398													14	48					0	0	1	0	0
EIF2C4	192670	broad.mit.edu	37	1	36282515	36282515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:36282515C>T	uc001bzj.1	+	2	242	c.52C>T	c.(52-54)CGT>TGT	p.R18C		NM_017629	NP_060099	Q9HCK5	AGO4_HUMAN	eukaryotic translation initiation factor 2C, 4	18					mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GCCACCTCGTCGTCCTGGCCT	0.353													22	104					0	0	1	0	0
EIF2C3	192669	broad.mit.edu	37	1	36411312	36411312	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:36411312C>T	uc001bzp.2	+	2	295	c.39C>T	c.(37-39)CCC>CCT	p.P13P	EIF2C3_uc001bzn.1_Silent_p.P13P|EIF2C3_uc001bzo.2_RNA|EIF2C3_uc001bzq.2_5'UTR	NM_024852	NP_079128	Q9H9G7	AGO3_HUMAN	eukaryotic translation initiation factor 2C, 3	13					mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GGGCCCAGCCCCTACTCATGG	0.473													23	132					0	0	1	0	0
EIF2C3	192669	broad.mit.edu	37	1	36509116	36509116	+	Silent	SNP	C	T	T	rs145947091	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:36509116C>T	uc001bzp.2	+	17	2497	c.2241C>T	c.(2239-2241)TTC>TTT	p.F747F	EIF2C3_uc001bzq.2_Silent_p.F513F	NM_024852	NP_079128	Q9H9G7	AGO3_HUMAN	eukaryotic translation initiation factor 2C, 3	747	Piwi.				mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CATATGAGTTCGATTTTTACC	0.348													4	40					0	0	1	0	0
TEKT2	27285	broad.mit.edu	37	1	36552306	36552306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:36552306C>T	uc001bzr.2	+	5	617	c.490C>T	c.(490-492)CTC>TTC	p.L164F	TEKT2_uc001bzs.2_Missense_Mutation_p.L70F|ADPRHL2_uc001bzt.2_5'Flank|ADPRHL2_uc001bzu.2_5'Flank	NM_014466	NP_055281	Q9UIF3	TEKT2_HUMAN	tektin 2	164					cell projection organization|microtubule cytoskeleton organization	actin cytoskeleton|cilium axoneme|flagellar axoneme|focal adhesion|microtubule|nucleolus					0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TTTCCCCAGCCTCTTGCAGGA	0.582													5	79					0	0	1	0	0
TEKT2	27285	broad.mit.edu	37	1	36553081	36553081	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:36553081C>T	uc001bzr.2	+	8	1024	c.897C>T	c.(895-897)CAC>CAT	p.H299H	TEKT2_uc001bzs.2_Silent_p.H205H|ADPRHL2_uc001bzt.2_5'Flank|ADPRHL2_uc001bzu.2_5'Flank	NM_014466	NP_055281	Q9UIF3	TEKT2_HUMAN	tektin 2	299	Potential.				cell projection organization|microtubule cytoskeleton organization	actin cytoskeleton|cilium axoneme|flagellar axoneme|focal adhesion|microtubule|nucleolus					0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				ACATCCGGCACCTGGAGGAGG	0.622													6	29					0	0	1	0	0
ADPRHL2	54936	broad.mit.edu	37	1	36558948	36558948	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:36558948C>T	uc001bzt.2	+	6	1106	c.1053C>T	c.(1051-1053)ATC>ATT	p.I351I	ADPRHL2_uc001bzu.2_Silent_p.I197I	NM_017825	NP_060295	Q9NX46	ARHL2_HUMAN	ADP-ribosylhydrolase like 2	351						cytoplasm|nucleus	metal ion binding|poly(ADP-ribose) glycohydrolase activity			pancreas(1)	1		Myeloproliferative disorder(586;0.0393)				AGACAGACATCCTGGCCCAAA	0.582													5	119					0	0	1	0	0
THRAP3	9967	broad.mit.edu	37	1	36757051	36757051	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:36757051C>T	uc001cae.3	+	6	2046	c.1822C>T	c.(1822-1824)CGT>TGT	p.R608C	THRAP3_uc001caf.3_Missense_Mutation_p.R608C	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	608					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				ACAGGAGTTTCGTTCCATTTT	0.463			T	USP6	aneurysmal bone cysts								31	55					0	0	1	0	0
STK40	83931	broad.mit.edu	37	1	36809042	36809042	+	Silent	SNP	G	A	A	rs111658119	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:36809042G>A	uc001cak.1	-	11	1419	c.1012C>T	c.(1012-1014)CTG>TTG	p.L338L	STK40_uc001cal.1_Silent_p.L343L|STK40_uc001cam.1_Silent_p.L338L|STK40_uc009vva.1_Intron|STK40_uc001can.1_Silent_p.L338L	NM_032017	NP_114406	Q8N2I9	STK40_HUMAN	serine/threonine kinase 40	338						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1		Myeloproliferative disorder(586;0.0393)				AGAGATGACAGGGACTGCCTG	0.567													3	22					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37270685	37270686	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:37270685_37270686CC>TT	uc001caz.2	-	15	2602_2603	c.2467_2468GG>AA	c.(2467-2469)GGC>AAC	p.G823N	GRIK3_uc001cba.1_Missense_Mutation_p.G823N	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	823	Helical; (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	AATGAAGATGCCCCCGATCTTC	0.594													8	104					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37307487	37307487	+	Silent	SNP	G	A	A	rs140524228		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:37307487G>A	uc001caz.2	-	10	1515	c.1380C>T	c.(1378-1380)GAC>GAT	p.D460D	GRIK3_uc001cba.1_Silent_p.D460D	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	460	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CCTCGAACCGGTCATTCCCGT	0.577													27	138					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37319298	37319298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:37319298C>T	uc001caz.2	-	8	1265	c.1130G>A	c.(1129-1131)CGA>CAA	p.R377Q	GRIK3_uc001cba.1_Missense_Mutation_p.R377Q	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	377	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	GAAAACAATTCGTCCAGTTAA	0.498													17	44					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37346335	37346335	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:37346335C>T	uc001caz.2	-	3	585	c.450G>A	c.(448-450)GTG>GTA	p.V150V	GRIK3_uc001cba.1_Silent_p.V150V	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	150	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	GGTAGAGGTTCACGTAGAAGG	0.602													24	90					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37356579	37356579	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:37356579G>A	uc001caz.2	-	2	369	c.234C>T	c.(232-234)ACC>ACT	p.T78T	GRIK3_uc001cba.1_Silent_p.T78T	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	78	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CATAGGTCAAGGTTGTGTTGG	0.547													7	53					0	0	1	0	0
DNALI1	7802	broad.mit.edu	37	1	38023281	38023281	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:38023281C>T	uc001cbj.2	+	2	235	c.225C>T	c.(223-225)CCC>CCT	p.P75P	DNALI1_uc010oie.1_RNA	NM_003462	NP_003453	O14645	IDLC_HUMAN	dynein, axonemal, light intermediate chain 1	53					cellular component movement|single fertilization	axonemal dynein complex	microtubule motor activity			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCAAGCTCCCCTCAACTCCCT	0.562													13	164					0	0	1	0	0
CDCA8	55143	broad.mit.edu	37	1	38172709	38172709	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:38172709G>A	uc001cbr.2	+	10	878	c.771G>A	c.(769-771)GAG>GAA	p.E257E	CDCA8_uc001cbs.2_Silent_p.E257E	NM_018101	NP_060571	Q53HL2	BOREA_HUMAN	cell division cycle associated 8	257					cell division|chromosome organization|mitotic metaphase|mitotic prometaphase	chromosome passenger complex|chromosome, centromeric region|cytosol|nucleolus|spindle	protein binding			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TGGATCCAGAGGCCTTGGGAA	0.483													38	123					0	0	1	0	0
EPHA10	284656	broad.mit.edu	37	1	38227500	38227500	+	Missense_Mutation	SNP	G	T	T	rs45567442		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:38227500G>T	uc009vvi.2	-	3	513	c.427C>A	c.(427-429)CGC>AGC	p.R143S	EPHA10_uc001cbw.3_Missense_Mutation_p.R143S	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	143	Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCGCCTAGGCGGGGACGCCCA	0.657													5	77					1	1	1	1	0
MANEAL	149175	broad.mit.edu	37	1	38260270	38260270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:38260270C>T	uc001cby.2	+	1	497	c.416C>T	c.(415-417)GCC>GTC	p.A139V	MANEAL_uc001cbx.2_Missense_Mutation_p.A139V|MANEAL_uc001cbz.2_5'Flank	NM_001113482	NP_001106954	Q5VSG8	MANEL_HUMAN	mannosidase, endo-alpha-like isoform 3	139	Lumenal (Potential).					Golgi membrane|integral to membrane	hydrolase activity				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				AAGATCTCGGCCAGCTACCCC	0.692													5	41					0	0	1	0	0
INPP5B	3633	broad.mit.edu	37	1	38353980	38353980	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:38353980G>A	uc001ccg.1	-	10	928	c.834C>T	c.(832-834)TCC>TCT	p.S278S	INPP5B_uc009vvk.1_Silent_p.S219S|INPP5B_uc001ccf.1_Silent_p.S114S|INPP5B_uc010oij.1_RNA	NM_005540	NP_005531	P32019	I5P2_HUMAN	inositol polyphosphate-5-phosphatase, 75kDa	358					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to membrane|microtubule cytoskeleton	GTPase activator activity|inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			urinary_tract(1)	1	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				ATTCTTTGGGGGACTGCCCAT	0.468													9	62					0	0	1	0	0
FHL3	2275	broad.mit.edu	37	1	38465025	38465025	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:38465025G>A	uc001ccj.2	-	2	147	c.60C>T	c.(58-60)ATC>ATT	p.I20I	FHL3_uc001cck.2_Silent_p.I20I|FHL3_uc001ccl.2_Silent_p.I20I|FHL3_uc001ccm.2_Intron|FHL3_uc009vvl.1_Silent_p.I20I	NM_004468	NP_004459	Q13643	FHL3_HUMAN	four and a half LIM domains 3	20	C4-type (Potential).				muscle organ development		zinc ion binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				TGTCTGTCTGGATGTACTTGC	0.537													11	49					0	0	1	0	0
GJA9	81025	broad.mit.edu	37	1	39341345	39341345	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:39341345C>T	uc001cct.1	-	2	707	c.426G>A	c.(424-426)AGG>AGA	p.R142R	RRAGC_uc001ccr.2_5'Flank|MYCBP_uc001ccs.2_5'Flank	NM_030772	NP_110399	P57773	CXA9_HUMAN	gap junction protein, alpha 9, 59kDa	142	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane					0	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;8.23e-17)			TATTTAGTTTCCTTTTCTCCA	0.438													25	90					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39765950	39765950	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:39765950C>T	uc010ois.1	+	23	2770	c.2565C>T	c.(2563-2565)ATC>ATT	p.I855I	MACF1_uc001cda.1_Silent_p.I763I|MACF1_uc001cdc.1_5'UTR|MACF1_uc009vvq.1_5'UTR|MACF1_uc001cdb.1_5'UTR	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	855					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CAAAAACCATCGTTCAGCTAA	0.433													10	58					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39799810	39799810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:39799810C>T	uc010oiu.1	+	1	3001	c.2870C>T	c.(2869-2871)TCT>TTT	p.S957F	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	2522	Plectin 9.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ATGAGACTTTCTGTTGATAAT	0.398													5	104					0	0	1	0	0
KIAA0754	643314	broad.mit.edu	37	1	39876768	39876768	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:39876768C>T	uc009vvt.1	+	1	1593	c.831C>T	c.(829-831)CCC>CCT	p.P277P	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	141											0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGCAGCACCCCCTTGGGGACA	0.522											OREG0013393	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	16					0	0	1	0	0
KIAA0754	643314	broad.mit.edu	37	1	39878166	39878166	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:39878166C>T	uc009vvt.1	+	1	2991	c.2229C>T	c.(2227-2229)TTC>TTT	p.F743F	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	607											0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ACAGAAACTTCCCAGAGCAGG	0.488													8	63					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39905145	39905145	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:39905145C>T	uc010oiu.1	+	37	13880	c.13749C>T	c.(13747-13749)ATC>ATT	p.I4583I	MACF1_uc010ois.1_Silent_p.I4081I	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ATCCTTCCATCATCAAACAAC	0.438													6	55					0	0	1	0	0
PABPC4	8761	broad.mit.edu	37	1	40029401	40029401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:40029401G>A	uc010oiv.1	-	12	2403	c.1505C>T	c.(1504-1506)GCT>GTT	p.A502V	PABPC4_uc001cdl.2_Missense_Mutation_p.A518V|PABPC4_uc001cdm.2_Missense_Mutation_p.A489V	NM_003819	NP_003810	Q13310	PABP4_HUMAN	poly A binding protein, cytoplasmic 4 isoform 2	502					blood coagulation|RNA catabolic process|RNA processing|translation	cytoplasm|ribonucleoprotein complex	nucleotide binding|poly(A) RNA binding|poly(U) RNA binding|protein binding				0	Lung NSC(20;1.55e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.89e-18)|Epithelial(16;6.17e-17)|all cancers(16;1.18e-15)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			GTTCTGCACAGCTGTGGGAAC	0.562													8	85					0	0	1	0	0
MYCL1	4610	broad.mit.edu	37	1	40363568	40363568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:40363568C>T	uc001cer.1	-	3	788	c.571G>A	c.(571-573)GTG>ATG	p.V191M	MYCL1_uc001ces.1_Missense_Mutation_p.V191M	NM_001033082	NP_001028254	P12524	MYCL1_HUMAN	l-myc-1 proto-oncogene isoform 1	191						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|liver(1)	2	all_cancers(7;1.73e-14)|all_lung(5;2.77e-17)|all_epithelial(6;6.81e-17)|Lung SC(1;2.85e-13)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.51e-19)|Epithelial(16;3.36e-18)|all cancers(16;8.43e-17)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			TCTGCTCGCACCGTGATGGTG	0.502			A		small cell lung 								10	88					0	0	1	0	0
COL9A2	1298	broad.mit.edu	37	1	40776925	40776925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:40776925G>A	uc001cfh.1	-	11	623	c.553C>T	c.(553-555)CCC>TCC	p.P185S	COL9A2_uc001cfi.1_Missense_Mutation_p.P4S	NM_001852	NP_001843	Q14055	CO9A2_HUMAN	alpha 2 type IX collagen precursor	185	Triple-helical region 3 (COL3).				axon guidance|skeletal system development	collagen type IX				ovary(2)	2	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.08e-17)			AGCCCTGGGGGACCTTTCATT	0.597													7	10					0	0	1	0	0
SMAP2	64744	broad.mit.edu	37	1	40881029	40881029	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:40881029C>T	uc001cfj.2	+	7	722	c.657C>T	c.(655-657)TCC>TCT	p.S219S	SMAP2_uc010ojh.1_Silent_p.S219S|SMAP2_uc001cfk.2_Silent_p.S189S|SMAP2_uc010oji.1_Silent_p.S136S|SMAP2_uc010ojj.1_Silent_p.S35S	NM_022733	NP_073570	Q8WU79	SMAP2_HUMAN	small ArfGAP2	219	Interaction with clathrin heavy chains (By similarity).				regulation of ARF GTPase activity	cytoplasm|nucleus	ARF GTPase activator activity|zinc ion binding				0	Lung NSC(20;1.56e-05)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.04e-17)			CTGTTCCATCCCCTTCTTCTT	0.448													7	180					0	0	1	0	0
ZNF642	339559	broad.mit.edu	37	1	40947508	40947508	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:40947508C>T	uc001cfo.2	+	3	495	c.201C>T	c.(199-201)CTC>CTT	p.L67L	ZNF642_uc009vwb.2_Silent_p.L67L|ZNF642_uc010ojk.1_Silent_p.L67L	NM_198494	NP_940896	Q49AA0	ZN642_HUMAN	zinc finger protein 642	67					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;8.81e-19)			CCCCTGGACTCCCGACAGCAG	0.478													4	60					0	0	1	0	0
DEM1	64789	broad.mit.edu	37	1	40980366	40980366	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:40980366C>T	uc001cfp.2	+	3	355	c.150C>T	c.(148-150)TCC>TCT	p.S50S	DEM1_uc001cfq.2_Silent_p.S50S|DEM1_uc001cfr.2_Silent_p.S50S|DEM1_uc001cfs.2_Silent_p.S50S	NM_022774	NP_073611	Q9H790	EXO5_HUMAN	defects in morphology 1 homolog	50							DNA binding|exonuclease activity				0						CTTCTGAATCCCTTGGGAAGG	0.418													22	62					0	0	1	0	0
KCNQ4	9132	broad.mit.edu	37	1	41304053	41304053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:41304053C>T	uc001cgh.1	+	14	2028	c.1946C>T	c.(1945-1947)TCG>TTG	p.S649L	KCNQ4_uc001cgi.1_Missense_Mutation_p.S595L	NM_004700	NP_004691	P56696	KCNQ4_HUMAN	potassium voltage-gated channel KQT-like protein	649	Cytoplasmic.|A-domain (Tetramerization).				sensory perception of sound	basal plasma membrane|voltage-gated potassium channel complex				central_nervous_system(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.38e-17)			TCTGGCACCTCGGCCAGCCTG	0.667													16	149					0	0	1	0	0
CTPS	1503	broad.mit.edu	37	1	41450608	41450608	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:41450608C>T	uc001cgk.3	+	3	790	c.282C>T	c.(280-282)TAC>TAT	p.Y94Y	CTPS_uc010ojo.1_Intron|CTPS_uc010ojp.1_Silent_p.Y101Y|CTPS_uc001cgl.3_Silent_p.Y94Y	NM_001905	NP_001896	P17812	PYRG1_HUMAN	CTP synthase	94					CTP biosynthetic process|glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|response to drug	cytosol	ATP binding|CTP synthase activity|protein binding				0	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Breast(333;0.1)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)			L-Glutamine(DB00130)	GAAAGATATACCAGTATGTCA	0.423													14	92					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42045703	42045703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:42045703G>A	uc001cgz.3	-	4	5979	c.4766C>T	c.(4765-4767)TCA>TTA	p.S1589L	HIVEP3_uc001cha.3_Missense_Mutation_p.S1589L|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1589					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TACCTTCTTTGAGTCCGTACC	0.502													42	164					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42047703	42047703	+	Silent	SNP	G	A	A	rs138905658	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:42047703G>A	uc001cgz.3	-	4	3979	c.2766C>T	c.(2764-2766)TTC>TTT	p.F922F	HIVEP3_uc001cha.3_Silent_p.F922F|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	922	Ser-rich.|No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				CAGAGGACTCGAAGCTGGACT	0.592													26	145					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42049697	42049698	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:42049697_42049698TC>AT	uc001cgz.3	-	4	1984_1985	c.771_772GA>AT	c.(769-774)GAGATG>GAATTG	p.M258L	HIVEP3_uc001cha.3_Missense_Mutation_p.M258L|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	258	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TGTGGGTACATCTCGCCACCCA	0.564													5	79					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42049962	42049962	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:42049962G>A	uc001cgz.3	-	4	1720	c.507C>T	c.(505-507)TCC>TCT	p.S169S	HIVEP3_uc001cha.3_Silent_p.S169S|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	169					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				AGGAGACCTGGGAAGGACGAG	0.602													9	140					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42049977	42049977	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:42049977G>A	uc001cgz.3	-	4	1705	c.492C>T	c.(490-492)TTC>TTT	p.F164F	HIVEP3_uc001cha.3_Silent_p.F164F|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	164					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GACGAGGCACGAAGACTTTGG	0.597													11	145					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	43352459	43352459	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:43352459C>T	uc001cij.1	+	4		c.361C>T								Homo sapiens cDNA clone IMAGE:5170739.																		TGAGGTAGATCACAGCCAGCA	0.587													7	12					0	0	1	0	0
WDR65	149465	broad.mit.edu	37	1	43675659	43675659	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:43675659C>T	uc001cip.1	+	11	2122	c.2001C>T	c.(1999-2001)ACC>ACT	p.T667T	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Intron|WDR65_uc001ciq.1_Silent_p.T667T	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	Error:Variant_position_missing_in_Q96MR6_after_alignment										skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TCCCTTCAACCTCCCAATGTC	0.443													4	40					0	0	1	0	0
MED8	112950	broad.mit.edu	37	1	43854021	43854021	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:43854021A>C	uc001cjg.3	-	2	133	c.85T>G	c.(85-87)TTC>GTC	p.F29V	MED8_uc001cje.1_Missense_Mutation_p.F29V|MED8_uc001cjf.3_5'UTR|C1orf84_uc001cjh.2_5'Flank|C1orf84_uc001cji.1_5'Flank|KIAA0467_uc009vws.1_5'Flank	NM_201542	NP_963836	Q96G25	MED8_HUMAN	mediator complex subunit 8 isoform 1	29					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				TTGCAAATGAAACTCCCCAGA	0.527													6	55					0	0	1	0	0
KIAA0467	23334	broad.mit.edu	37	1	43885473	43885473	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:43885473C>T	uc009vws.1	+	8	1032	c.948C>T	c.(946-948)ATC>ATT	p.I316I				Q5T011	SZT2_HUMAN	Homo sapiens mRNA for KIAA0467 protein, partial cds.	316						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TGAAGTTCATCGCAATGGCAA	0.502													6	47					0	0	1	0	0
KIAA0467	23334	broad.mit.edu	37	1	43895433	43895433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:43895433C>T	uc001cjk.1	+	14	1991	c.1529C>T	c.(1528-1530)CCA>CTA	p.P510L		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	1409						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCTGGCATTCCAGACCCTGGG	0.552													5	74					0	0	1	0	0
KIAA0467	23334	broad.mit.edu	37	1	43903465	43903465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:43903465C>T	uc001cjk.1	+	31	4165	c.3703C>T	c.(3703-3705)CCT>TCT	p.P1235S		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	2134						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCTGTAGGGTCCTCGTTCTCC	0.567													15	138					0	0	1	0	0
PTPRF	5792	broad.mit.edu	37	1	44085016	44085016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:44085016G>A	uc001cjr.2	+	28	5044	c.4704G>A	c.(4702-4704)ATG>ATA	p.M1568I	PTPRF_uc001cjs.2_Missense_Mutation_p.M1559I|PTPRF_uc001cju.2_Missense_Mutation_p.M957I|PTPRF_uc009vwt.2_Missense_Mutation_p.M1128I|PTPRF_uc001cjv.2_Missense_Mutation_p.M1039I|PTPRF_uc001cjw.2_Missense_Mutation_p.M794I	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1568	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				TGGAGCGGATGAAGCACGAGA	0.607													9	36					0	0	1	0	0
PTPRF	5792	broad.mit.edu	37	1	44085891	44085891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:44085891G>A	uc001cjr.2	+	30	5577	c.5237G>A	c.(5236-5238)AGG>AAG	p.R1746K	PTPRF_uc001cjs.2_Missense_Mutation_p.R1737K|PTPRF_uc001cju.2_Missense_Mutation_p.R1135K|PTPRF_uc009vwt.2_Missense_Mutation_p.R1306K|PTPRF_uc001cjv.2_Missense_Mutation_p.R1217K|PTPRF_uc001cjw.2_Missense_Mutation_p.R972K	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1746	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GAGATGGGCAGGGTGAGCCCA	0.612													7	135					0	0	1	0	0
IPO13	9670	broad.mit.edu	37	1	44432451	44432451	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:44432451C>T	uc001ckx.2	+	17	3315	c.2520C>T	c.(2518-2520)TTC>TTT	p.F840F	IPO13_uc001cky.2_Silent_p.F58F	NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	840					protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				CCTGTGGCTTCTTTGTGAGTC	0.587													6	30					0	0	1	0	0
SLC6A9	6536	broad.mit.edu	37	1	44467119	44467119	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:44467119G>A	uc001cll.2	-	9	1554	c.1362C>T	c.(1360-1362)TCC>TCT	p.S454S	SLC6A9_uc009vxe.2_Silent_p.S310S|SLC6A9_uc010okm.1_Silent_p.S381S|SLC6A9_uc001clm.2_Silent_p.S400S|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Silent_p.S385S|SLC6A9_uc001cln.2_Silent_p.S381S|SLC6A9_uc010oko.1_Silent_p.S270S|SLC6A9_uc010okp.1_RNA	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	454	Helical; Name=8; (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	ACCACAGCGGGGAGATGGGAA	0.637													14	49					0	0	1	0	0
SLC6A9	6536	broad.mit.edu	37	1	44475743	44475743	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:44475743G>A	uc001cll.2	-	4	624	c.432C>T	c.(430-432)ATC>ATT	p.I144I	SLC6A9_uc009vxe.2_5'UTR|SLC6A9_uc010okm.1_Silent_p.I71I|SLC6A9_uc001clm.2_Silent_p.I90I|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Silent_p.I75I|SLC6A9_uc001cln.2_Silent_p.I71I|SLC6A9_uc010oko.1_Intron|SLC6A9_uc010okp.1_RNA	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	144	Helical; Name=2; (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	AGATGAGCATGATGAAGTAGG	0.597													11	74					0	0	1	0	0
KLF17	128209	broad.mit.edu	37	1	44595425	44595425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:44595425C>T	uc001clp.2	+	2	540	c.482C>T	c.(481-483)TCG>TTG	p.S161L	KLF17_uc009vxf.1_Missense_Mutation_p.S124L	NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	161					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CTGCCAGTCTCGGCTTCCACT	0.577													6	36					0	0	1	0	0
RNF220	55182	broad.mit.edu	37	1	44877835	44877835	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:44877835C>T	uc001clv.1	+	2	426	c.66C>T	c.(64-66)TCC>TCT	p.S22S	RNF220_uc001clw.1_Silent_p.S22S	NM_018150	NP_060620	Q5VTB9	RN220_HUMAN	ring finger protein 220	22					protein autoubiquitination	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CTCTGGCATCCCCAGCACTGA	0.572													15	77					0	0	1	0	0
KIF2C	11004	broad.mit.edu	37	1	45205647	45205647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:45205647C>T	uc001cmg.3	+	1	158	c.43C>T	c.(43-45)CTC>TTC	p.L15F	KIF2C_uc010olb.1_Missense_Mutation_p.L15F	NM_006845	NP_006836	Q99661	KIF2C_HUMAN	kinesin family member 2C	15	Globular (Potential).				blood coagulation|cell division|cell proliferation|chromosome segregation|establishment or maintenance of microtubule cytoskeleton polarity|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|kinesin complex|microtubule|nucleus	ATP binding|centromeric DNA binding|microtubule motor activity|microtubule plus-end binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GTTTCCCGGTCTCGCTATCAA	0.562													53	399					0	0	1	0	0
BEST4	266675	broad.mit.edu	37	1	45253068	45253068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:45253068G>A	uc001cmm.2	-	2	272	c.223C>T	c.(223-225)CTC>TTC	p.L75F		NM_153274	NP_695006	Q8NFU0	BEST4_HUMAN	bestrophin 4	75	Helical; (Potential).					chloride channel complex|plasma membrane	chloride channel activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					AAGGGAATGAGGTCTGCTGAG	0.572													27	130					0	0	1	0	0
PTCH2	8643	broad.mit.edu	37	1	45288223	45288223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:45288223G>A	uc010olf.1	-	22	3488	c.3476C>T	c.(3475-3477)TCC>TTC	p.S1159F	PTCH2_uc010olg.1_Missense_Mutation_p.S857F	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	1159	Cytoplasmic (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					CACGGTCATGGAGGTAGTCAC	0.647									Basal_Cell_Nevus_syndrome				20	93					0	0	1	0	0
PTCH2	8643	broad.mit.edu	37	1	45288250	45288251	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:45288250_45288251GG>AA	uc010olf.1	-	22	3460_3461	c.3448_3449CC>TT	c.(3448-3450)CCC>TTC	p.P1150F	PTCH2_uc010olg.1_Missense_Mutation_p.P848F	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	1150	Cytoplasmic (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					AAAGCTCTGGGGCAGGGAGGAG	0.629									Basal_Cell_Nevus_syndrome				8	131					0	0	1	0	0
PTCH2	8643	broad.mit.edu	37	1	45297674	45297674	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:45297674G>A	uc010olf.1	-	4	510	c.498C>T	c.(496-498)CCC>CCT	p.P166P	PTCH2_uc010olg.1_5'UTR	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	166	Extracellular (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					TTTCAATAAGGGGAACTCCTG	0.507									Basal_Cell_Nevus_syndrome				31	124					0	0	1	0	0
HECTD3	79654	broad.mit.edu	37	1	45475742	45475742	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:45475742G>T	uc009vxk.2	-	4	773	c.675C>A	c.(673-675)TTC>TTA	p.F225L	HECTD3_uc001cmy.3_5'Flank|HECTD3_uc010olh.1_Intron|UROD_uc010oli.1_5'Flank|UROD_uc001cna.1_5'Flank|UROD_uc001cnb.1_5'Flank|UROD_uc010olj.1_5'Flank|UROD_uc001cnc.1_5'Flank	NM_024602	NP_078878	Q5T447	HECD3_HUMAN	HECT domain containing 3	225	DOC.				proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	ubiquitin-protein ligase activity				0	Acute lymphoblastic leukemia(166;0.155)					GGTCATACAAGAAGTGGATCA	0.572													19	84					1.67942e-08	1.70188e-08	1	1	0
ZSWIM5	57643	broad.mit.edu	37	1	45484391	45484391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:45484391C>T	uc001cnd.2	-	14	3521	c.3293G>A	c.(3292-3294)GGA>GAA	p.G1098E		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	1098							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					CATGAGCTTTCCAGAGCTTCG	0.552											OREG0013450	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	54					0	0	1	0	0
NASP	4678	broad.mit.edu	37	1	46073635	46073635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:46073635C>T	uc001coi.1	+	6	1154	c.1052C>T	c.(1051-1053)GCT>GTT	p.A351V	NASP_uc010olq.1_Missense_Mutation_p.A314V|NASP_uc001coh.1_Missense_Mutation_p.A353V|NASP_uc001coj.1_Intron|NASP_uc010olr.1_Missense_Mutation_p.A287V|NASP_uc001cok.1_Missense_Mutation_p.A234V	NM_002482	NP_002473	P49321	NASP_HUMAN	nuclear autoantigenic sperm protein isoform 2	351	Glu-rich (acidic).				blastocyst development|cell cycle|cell proliferation|DNA replication|histone exchange|protein transport	cytoplasm|nucleus	Hsp90 protein binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.211)					ACAACAGAGGCTGCAGAGGCC	0.532													14	95					0	0	1	0	0
MAST2	23139	broad.mit.edu	37	1	46496338	46496338	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:46496338C>T	uc001cov.2	+	22	2896	c.2613C>T	c.(2611-2613)ACC>ACT	p.T871T	MAST2_uc001cow.2_Silent_p.T871T|MAST2_uc001coy.1_Silent_p.T545T|MAST2_uc001coz.1_Silent_p.T756T|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	871					regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					CACCCCCGACCAAGCGCAGCC	0.652													5	11					0	0	1	0	0
LRRC41	10489	broad.mit.edu	37	1	46751328	46751328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:46751328G>A	uc001cpn.2	-	4	1245	c.1201C>T	c.(1201-1203)CGC>TGC	p.R401C	LRRC41_uc010omb.1_Missense_Mutation_p.R401C|LRRC41_uc001cpo.1_Missense_Mutation_p.R401C	NM_006369	NP_006360	Q15345	LRC41_HUMAN	MUF1 protein	401										ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(166;0.155)					TGACGGGTGCGAGCACCCTTC	0.552													5	105					0	0	1	0	0
DMBX1	127343	broad.mit.edu	37	1	46976227	46976227	+	Silent	SNP	C	T	T	rs138324077		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:46976227C>T	uc001cpx.2	+	2	264	c.249C>T	c.(247-249)CTC>CTT	p.L83L	DMBX1_uc001cpw.2_Silent_p.L78L	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	83	Homeobox.|Interacts with OXT2 and is required for repressor activity (By similarity).				brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CTCAGCAGCTCGAGGCCCTGG	0.592													4	40					0	0	1	0	0
ATPAF1	64756	broad.mit.edu	37	1	47101462	47101462	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:47101462G>A	uc001cqh.2	-	9	1078	c.973C>T	c.(973-975)CAA>TAA	p.Q325*	ATPAF1_uc001cqg.2_Nonsense_Mutation_p.Q106*|ATPAF1_uc009vyk.2_Nonsense_Mutation_p.Q174*|ATPAF1_uc010omg.1_Nonsense_Mutation_p.Q237*|ATPAF1_uc001cqi.2_Nonsense_Mutation_p.Q257*	NM_022745	NP_073582	Q5TC12	ATPF1_HUMAN	ATP synthase mitochondrial F1 complex assembly	325					protein complex assembly	mitochondrion	protein binding				0	Acute lymphoblastic leukemia(166;0.155)					GTCTTATTTTGGTTCTGGGCA	0.483													23	68					0	0	1	0	0
CYP4B1	1580	broad.mit.edu	37	1	47279701	47279701	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:47279701C>T	uc001cqm.3	+	6	822	c.738C>T	c.(736-738)TTC>TTT	p.F246F	CYP4B1_uc009vyl.1_Silent_p.F83F|CYP4B1_uc001cqn.3_Silent_p.F247F|CYP4B1_uc009vym.2_Silent_p.F232F|CYP4B1_uc010omk.1_Silent_p.F83F|CYP4B1_uc010oml.1_Silent_p.F84F	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	246					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GCCGCCGCTTCCTGCGGGCCT	0.597													24	121					0	0	1	0	0
CYP4B1	1580	broad.mit.edu	37	1	47282724	47282724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:47282724G>A	uc001cqm.3	+	9	1159	c.1075G>A	c.(1075-1077)GAT>AAT	p.D359N	CYP4B1_uc001cqn.3_Missense_Mutation_p.D360N|CYP4B1_uc009vym.2_Missense_Mutation_p.D345N|CYP4B1_uc010omk.1_Missense_Mutation_p.D196N	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	359					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					TGGCAGGGATGATCTGGGCAA	0.552													14	147					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47395897	47395897	+	Missense_Mutation	SNP	G	A	A	rs142799750		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:47395897G>A	uc001cqp.3	-	12	1501	c.1450C>T	c.(1450-1452)CCC>TCC	p.P484S		NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	484					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	ATCCTGGTGGGATCAGGCAGC	0.562													4	95					0	0	1	0	0
CYP4X1	260293	broad.mit.edu	37	1	47501699	47501699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:47501699C>T	uc001cqt.2	+	6	881	c.631C>T	c.(631-633)CCT>TCT	p.P211S	CYP4X1_uc001cqr.2_Missense_Mutation_p.P210S|CYP4X1_uc001cqs.2_Missense_Mutation_p.P146S	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	211						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CACCCATGATCCTTATGCAAA	0.373													6	31					0	0	1	0	0
CYP4X1	260293	broad.mit.edu	37	1	47515128	47515128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:47515128C>T	uc001cqt.2	+	11	1557	c.1307C>T	c.(1306-1308)TCT>TTT	p.S436F	CYP4X1_uc001cqr.2_Missense_Mutation_p.S435F|CYP4X1_uc001cqs.2_Missense_Mutation_p.S371F	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	436						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CAGGAGAATTCTGATCAGAGA	0.448													5	30					0	0	1	0	0
CYP4A22	284541	broad.mit.edu	37	1	47609046	47609046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:47609046G>A	uc001cqv.1	+	5	667	c.616G>A	c.(616-618)GGC>AGC	p.G206S	CYP4A22_uc009vyo.2_Missense_Mutation_p.G206S|CYP4A22_uc009vyp.2_Missense_Mutation_p.G206S	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	206						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						CAGCCATCAGGGCAGCATCCA	0.577													13	37					0	0	1	0	0
CYP4A22	284541	broad.mit.edu	37	1	47610066	47610067	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:47610066_47610067GG>AA	uc001cqv.1	+	7	879_880	c.828_829GG>AA	c.(826-831)AAGGAG>AAAAAG	p.E277K	CYP4A22_uc009vyo.2_Missense_Mutation_p.E277K|CYP4A22_uc009vyp.2_Missense_Mutation_p.G225K	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	277						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						AACTACAGAAGGAGGGGGAGCT	0.535													4	91					0	0	1	0	0
CYP4A22	284541	broad.mit.edu	37	1	47614387	47614387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:47614387G>A	uc001cqv.1	+	12	1529	c.1478G>A	c.(1477-1479)CGA>CAA	p.R493Q		NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	493						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						CCCATGGCACGACTTGTGTTG	0.562													20	68					0	0	1	0	0
STIL	6491	broad.mit.edu	37	1	47770613	47770613	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:47770613A>G	uc001crc.1	-	3	255	c.100T>C	c.(100-102)TGG>CGG	p.W34R	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Missense_Mutation_p.W34R|STIL_uc010omo.1_Missense_Mutation_p.W34R|STIL_uc001crd.1_Missense_Mutation_p.W34R|STIL_uc001cre.1_Missense_Mutation_p.W34R|STIL_uc001crg.1_Missense_Mutation_p.W34R	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	34					cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				GTTGGGTTCCAAAGTGCACAT	0.358													8	22					0	0	1	0	0
SLC5A9	200010	broad.mit.edu	37	1	48688462	48688462	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:48688462G>A	uc001cro.2	+	1	106	c.54G>A	c.(52-54)AGG>AGA	p.R18R	SLC5A9_uc010oms.1_RNA|SLC5A9_uc001crn.2_Silent_p.R18R|SLC5A9_uc010omt.1_Silent_p.R11R|SLC5A9_uc001crp.2_5'UTR|SLC5A9_uc010omu.1_5'UTR	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	18	Extracellular (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						ACGGGGTCAGGACTGAGACAG	0.572													9	36					0	0	1	0	0
SLC5A9	200010	broad.mit.edu	37	1	48688549	48688549	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:48688549C>T	uc001cro.2	+	1	193	c.141C>T	c.(139-141)TTC>TTT	p.F47F	SLC5A9_uc010oms.1_RNA|SLC5A9_uc001crn.2_Silent_p.F47F|SLC5A9_uc010omt.1_Silent_p.F40F|SLC5A9_uc001crp.2_5'UTR|SLC5A9_uc010omu.1_5'UTR	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	47	Helical; (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						ACTTTGTCTTCGTCATTGCTG	0.602													4	24					0	0	1	0	0
AGBL4	84871	broad.mit.edu	37	1	49119053	49119053	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:49119053G>A	uc001cru.2	-	8	953	c.795C>T	c.(793-795)ATC>ATT	p.I265I	AGBL4_uc010omw.1_5'UTR|AGBL4_uc010omx.1_Silent_p.I277I|AGBL4_uc001crv.1_Silent_p.I118I|AGBL4_uc010omy.1_Silent_p.I88I	NM_032785	NP_116174	Q5VU57	CBPC6_HUMAN	ATP/GTP binding protein-like 4	265					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2				Colorectal(2;0.00349)|COAD - Colon adenocarcinoma(2;0.0037)		GCATTGGTGCGATCTTGAAGA	0.473													3	4					0	0	1	0	0
BEND5	79656	broad.mit.edu	37	1	49202121	49202121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:49202121G>A	uc001crx.3	-	5	942	c.898C>T	c.(898-900)CAT>TAT	p.H300Y	AGBL4_uc001cru.2_Intron|AGBL4_uc010omw.1_Intron|AGBL4_uc010omx.1_Intron|AGBL4_uc001crv.1_Intron|AGBL4_uc010omy.1_Intron|BEND5_uc001crw.3_Missense_Mutation_p.H131Y	NM_024603	NP_078879	Q7L4P6	BEND5_HUMAN	BEN domain containing 5	300										skin(1)	1						CTTCCCAGATGGACCTGAGAG	0.478													5	37					0	0	1	0	0
BEND5	79656	broad.mit.edu	37	1	49224837	49224837	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:49224837G>A	uc001crx.3	-	3	524	c.480C>T	c.(478-480)TTC>TTT	p.F160F	AGBL4_uc001cru.2_Intron|AGBL4_uc010omw.1_Intron|AGBL4_uc010omx.1_Intron|AGBL4_uc001crv.1_Intron|AGBL4_uc010omy.1_Intron|BEND5_uc001crw.3_5'UTR	NM_024603	NP_078879	Q7L4P6	BEND5_HUMAN	BEN domain containing 5	160										skin(1)	1						AGGCCTCCACGAAGACCTCTT	0.617													4	22					0	0	1	0	0
PODN	127435	broad.mit.edu	37	1	53544334	53544334	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:53544334C>T	uc001cuv.2	+	8	1303	c.1296C>T	c.(1294-1296)ACC>ACT	p.T432T	PODN_uc001cuw.2_Silent_p.T413T|PODN_uc010onr.1_Silent_p.T413T|PODN_uc010ons.1_Silent_p.T290T	NM_153703	NP_714914	Q7Z5L7	PODN_HUMAN	podocan	384	LRR 13.				negative regulation of cell migration|negative regulation of cell proliferation	cytoplasm|extracellular space|proteinaceous extracellular matrix	collagen binding			ovary(1)|pancreas(1)	2						GCGTGCGCACCCTCATGATCC	0.622													7	117					0	0	1	0	0
PODN	127435	broad.mit.edu	37	1	53547716	53547716	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:53547716G>A	uc001cuv.2	+	10	1876	c.1869G>A	c.(1867-1869)CAG>CAA	p.Q623Q	PODN_uc001cuw.2_Silent_p.Q604Q|PODN_uc010onr.1_Silent_p.Q604Q|PODN_uc010ons.1_Silent_p.Q481Q	NM_153703	NP_714914	Q7Z5L7	PODN_HUMAN	podocan	575	LRR 20.				negative regulation of cell migration|negative regulation of cell proliferation	cytoplasm|extracellular space|proteinaceous extracellular matrix	collagen binding			ovary(1)|pancreas(1)	2						AGCACCTGCAGGTCTTGGACA	0.448													8	75					0	0	1	0	0
DMRTB1	63948	broad.mit.edu	37	1	53927230	53927230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:53927230C>T	uc001cvq.1	+	2	717	c.662C>T	c.(661-663)CCG>CTG	p.P221L		NM_033067	NP_149056	Q96MA1	DMRTB_HUMAN	DMRT-like family B with proline-rich C-terminal,	221	Pro-rich.				sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						TGCCCGTTCCCGCTGGGCTAC	0.662													6	86					0	0	1	0	0
GLIS1	148979	broad.mit.edu	37	1	53995570	53995570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:53995570C>T	uc001cvr.1	-	4	1418	c.851G>A	c.(850-852)AGG>AAG	p.R284K		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	284	C2H2-type 3.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						CGTGTGGCTCCTCAGGTGGAT	0.647													13	44					0	0	1	0	0
TMEM48	55706	broad.mit.edu	37	1	54258908	54258908	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:54258908G>A	uc001cvs.2	-	14	1870	c.1629C>T	c.(1627-1629)TTC>TTT	p.F543F	TMEM48_uc010onu.1_Silent_p.F503F|TMEM48_uc001cvt.2_Silent_p.F420F|TMEM48_uc009vzk.2_Intron|TMEM48_uc010onv.1_Silent_p.F208F	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	543	Cytoplasmic (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						TTACCTTACTGAAAAAATACA	0.303													31	87					0	0	1	0	0
CYB5RL	606495	broad.mit.edu	37	1	54661189	54661189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:54661189G>A	uc009vzo.2	-	3	421	c.101C>T	c.(100-102)TCA>TTA	p.S34L	CYB5RL_uc001cww.2_5'UTR|CYB5RL_uc001cwx.3_RNA|CYB5RL_uc001cwy.3_5'UTR	NM_001031672	NP_001026842	Q6IPT4	NB5R5_HUMAN	cytochrome b5 reductase-like	34							cytochrome-b5 reductase activity				0						CACACAGGGTGAGCAGCCACT	0.612													6	80					0	0	1	0	0
MRPL37	51253	broad.mit.edu	37	1	54666249	54666249	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:54666249C>T	uc001cxa.3	+	1	410	c.333C>T	c.(331-333)TGC>TGT	p.C111C	CYB5RL_uc009vzo.2_5'Flank|CYB5RL_uc001cwx.3_5'Flank|CYB5RL_uc001cwy.3_5'Flank|MRPL37_uc009vzp.2_Missense_Mutation_p.A81V|MRPL37_uc001cxb.1_Silent_p.C111C|MRPL37_uc001cxc.3_Intron|MRPL37_uc010oob.1_RNA	NM_016491	NP_057575	Q9BZE1	RM37_HUMAN	mitochondrial ribosomal protein L37 precursor	111					translation	mitochondrial ribosome	structural constituent of ribosome				0						ACCACCGTTGCCGCCTTCTCG	0.383													4	51					0	0	1	0	0
SSBP3	23648	broad.mit.edu	37	1	54707859	54707859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:54707859G>A	uc001cxe.2	-	11	1041	c.743C>T	c.(742-744)CCC>CTC	p.P248L	SSBP3_uc001cxf.2_Missense_Mutation_p.P228L|SSBP3_uc001cxg.2_Missense_Mutation_p.P221L	NM_145716	NP_663768	Q9BWW4	SSBP3_HUMAN	single stranded DNA binding protein 3 isoform a	248	Gly-rich.|Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	single-stranded DNA binding				0						GTTAGGATTGGGCCAGGGTCT	0.602													9	198					0	0	1	0	0
ACOT11	26027	broad.mit.edu	37	1	55072914	55072914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:55072914C>T	uc001cxm.1	+	14	1560	c.1478C>T	c.(1477-1479)TCG>TTG	p.S493L	ACOT11_uc001cxj.1_Missense_Mutation_p.S371L|ACOT11_uc001cxl.1_Missense_Mutation_p.S493L	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	493	START.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						ATCCTGGCCTCGAGGCGGAAG	0.627													12	45					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55119069	55119069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:55119069C>T	uc010ooe.1	+	3	794	c.470C>T	c.(469-471)TCA>TTA	p.S157L	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxo.2_Missense_Mutation_p.S157L|C1orf175_uc010ooc.1_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Intron|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.S157L|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	157						integral to membrane	binding				0						AAGTGCCTCTCAAGTAAGATT	0.323													6	72					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55139785	55139785	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:55139785G>A	uc010ooe.1	+	10	2221	c.1897G>A	c.(1897-1899)GGC>AGC	p.G633S	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Missense_Mutation_p.G201S|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.G151S|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.G633S|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	633						integral to membrane	binding				0						GGCTCTGGACGGCATCATCAT	0.527													12	136					0	0	1	0	0
TTC4	7268	broad.mit.edu	37	1	55186844	55186844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:55186844C>T	uc001cxx.3	+	4	453	c.400C>T	c.(400-402)CGT>TGT	p.R134C	C1orf175_uc001cxq.2_RNA|TTC4_uc001cxw.3_Missense_Mutation_p.R134C|TTC4_uc001cxv.2_Missense_Mutation_p.R145C	NM_004623	NP_004614	O95801	TTC4_HUMAN	tetratricopeptide repeat domain 4	134	TPR 2.						binding				0						AGGCAATTTTCGTTCTGCTCT	0.308													3	15					0	0	1	0	0
TTC22	55001	broad.mit.edu	37	1	55266612	55266612	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:55266612G>A	uc009vzt.1	-	1	330	c.225C>T	c.(223-225)TTC>TTT	p.F75F	TTC22_uc001cxz.3_Silent_p.F75F	NM_001114108	NP_001107580	Q5TAA0	TTC22_HUMAN	tetratricopeptide repeat domain 22 isoform 1	75	TPR 1.						binding				0						GGTAGAATGCGAAAGCGCCCA	0.711													6	13					0	0	1	0	0
DHCR24	1718	broad.mit.edu	37	1	55340859	55340859	+	Silent	SNP	G	A	A	rs149135890		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:55340859G>A	uc001cyc.1	-	4	648	c.519C>T	c.(517-519)ATC>ATT	p.I173I	DHCR24_uc010ooj.1_Silent_p.I35I|DHCR24_uc010ook.1_Silent_p.I132I	NM_014762	NP_055577	Q15392	DHC24_HUMAN	24-dehydrocholesterol reductase precursor	173	FAD-binding PCMH-type.|FAD (Potential).				anti-apoptosis|apoptosis|cell cycle arrest|cholesterol biosynthetic process|negative regulation of caspase activity|neuroprotection|response to oxidative stress|skin development	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus	delta24-sterol reductase activity|enzyme binding|flavin adenine dinucleotide binding|peptide antigen binding			pancreas(1)	1						ATGATGACTCGATGCCTGTGC	0.587													13	75					0	0	1	0	0
PCSK9	255738	broad.mit.edu	37	1	55505576	55505576	+	Silent	SNP	C	T	T	rs66498769		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:55505576C>T	uc001cyf.1	+	1	357	c.66C>T	c.(64-66)CTC>CTT	p.L22L	PCSK9_uc010ool.1_RNA|PCSK9_uc010oom.1_5'Flank	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	22					cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						tgctgctgctcctgGGTCCCG	0.577													12	184					0	0	1	0	0
PRKAA2	5563	broad.mit.edu	37	1	57169756	57169756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:57169756G>A	uc001cyk.3	+	7	972	c.901G>A	c.(901-903)GAA>AAA	p.E301K		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	301					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						TGAAAAATTTGAATGTACAGA	0.373													6	110					0	0	1	0	0
OMA1	115209	broad.mit.edu	37	1	58999681	58999681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:58999681G>A	uc001cyy.2	-	5	1043	c.955C>T	c.(955-957)CAT>TAT	p.H319Y	DAB1_uc001cyt.1_Intron|OMA1_uc001cyx.1_Missense_Mutation_p.H319Y|OMA1_uc009vzz.2_Missense_Mutation_p.H319Y	NM_145243	NP_660286	Q96E52	OMA1_HUMAN	OMA1 homolog, zinc metallopeptidase precursor	319					proteolysis	integral to membrane|mitochondrial membrane	metal ion binding|metalloendopeptidase activity			large_intestine(1)	1	all_cancers(7;6.54e-05)					GAAAGTTGATGAATATCGGTT	0.338													11	42					0	0	1	0	0
C1orf87	127795	broad.mit.edu	37	1	60456402	60456402	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:60456402G>A	uc001czs.1	-	12	1676	c.1584C>T	c.(1582-1584)TTC>TTT	p.F528F	C1orf87_uc001czr.1_Silent_p.F120F	NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	528							calcium ion binding			ovary(1)|breast(1)	2						CTCCCGAACGGAATCTGCGCA	0.483													20	52					0	0	1	0	0
TM2D1	83941	broad.mit.edu	37	1	62190767	62190767	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:62190767G>A	uc001czz.1	-	1	329	c.26C>T	c.(25-27)CCG>CTG	p.P9L		NM_032027	NP_114416	Q9BX74	TM2D1_HUMAN	beta-amyloid binding protein precursor	9					apoptosis					ovary(1)	1						CGGAGCAGACGGACCAGACGG	0.687													5	90					0	0	1	0	0
INADL	10207	broad.mit.edu	37	1	62456008	62456008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:62456008G>A	uc001dab.2	+	28	3953	c.3839G>A	c.(3838-3840)CGA>CAA	p.R1280Q	INADL_uc009waf.1_Missense_Mutation_p.R1280Q|INADL_uc001daa.2_Missense_Mutation_p.R1280Q|INADL_uc001dad.3_Missense_Mutation_p.R977Q|INADL_uc001dac.2_RNA|INADL_uc010oot.1_Missense_Mutation_p.R64Q|INADL_uc009wag.2_Missense_Mutation_p.R64Q|INADL_uc010oou.1_5'UTR	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1280	PDZ 7.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						GCAGATGGACGAATGCGTATT	0.453													4	10					0	0	1	0	0
INADL	10207	broad.mit.edu	37	1	62550251	62550251	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:62550251G>A	uc001dab.2	+	33	4422	c.4308G>A	c.(4306-4308)ATG>ATA	p.M1436I	INADL_uc009waf.1_Missense_Mutation_p.M1436I|INADL_uc001daa.2_Missense_Mutation_p.M1436I|INADL_uc001dad.3_Missense_Mutation_p.M1133I|INADL_uc001dac.2_RNA|INADL_uc010oot.1_Missense_Mutation_p.M220I|INADL_uc009wag.2_Missense_Mutation_p.M220I|INADL_uc010oou.1_Missense_Mutation_p.M109I	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1436					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						GACAGGAAATGATTATAGAAA	0.468													7	66					0	0	1	0	0
L1TD1	54596	broad.mit.edu	37	1	62672685	62672685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:62672685G>A	uc001dae.3	+	3	687	c.385G>A	c.(385-387)GAT>AAT	p.D129N		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	129										ovary(1)|skin(1)	2						aataggtgatgataatgaaaa	0.04													14	72					0	0	1	0	0
L1TD1	54596	broad.mit.edu	37	1	62675974	62675974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:62675974C>T	uc001dae.3	+	4	1830	c.1528C>T	c.(1528-1530)CCC>TCC	p.P510S		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	510										ovary(1)|skin(1)	2						AAAAGAAATTCCCTTTAGTTA	0.453													4	30					0	0	1	0	0
DOCK7	85440	broad.mit.edu	37	1	63113907	63113907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:63113907G>A	uc001daq.2	-	6	636	c.602C>T	c.(601-603)TCA>TTA	p.S201L	DOCK7_uc001dan.2_Missense_Mutation_p.S93L|DOCK7_uc001dao.2_Missense_Mutation_p.S93L|DOCK7_uc001dap.2_Missense_Mutation_p.S201L|DOCK7_uc009wah.1_Missense_Mutation_p.S201L	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	201					activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						ATCAGGAAGTGAATTTTTCAA	0.393													8	40					0	0	1	0	0
CACHD1	57685	broad.mit.edu	37	1	65095117	65095118	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:65095117_65095118CC>TT	uc001dbo.1	+	5	549_550	c.444_445CC>TT	c.(442-447)TTCCCA>TTTTCA	p.P149S	CACHD1_uc001dbp.1_5'UTR|CACHD1_uc001dbq.1_5'UTR	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	200	Extracellular (Potential).				calcium ion transport	integral to membrane				ovary(2)	2						TCACTGTTTTCCCAGCACACAA	0.401													4	20					0	0	1	0	0
JAK1	3716	broad.mit.edu	37	1	65330538	65330539	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:65330538_65330539GG>AA	uc001dbu.1	-	8	1356_1357	c.1107_1108CC>TT	c.(1105-1110)TTCCCT>TTTTCT	p.P370S	JAK1_uc009wam.1_Missense_Mutation_p.P358S	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	370	FERM.				interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		GTGATTTCAGGGAAGTAAGAAA	0.376			Mis		ALL								4	33					0	0	1	0	0
DNAJC6	9829	broad.mit.edu	37	1	65858423	65858423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:65858423C>T	uc001dcd.1	+	12	1771	c.1607C>T	c.(1606-1608)CCC>CTC	p.P536L	DNAJC6_uc001dcc.1_Missense_Mutation_p.P567L|DNAJC6_uc010opc.1_Missense_Mutation_p.P523L|DNAJC6_uc001dce.1_Missense_Mutation_p.P593L	NM_014787	NP_055602	O75061	AUXI_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 6	536	Pro-rich.				cellular membrane organization|post-Golgi vesicle-mediated transport	cytosol	heat shock protein binding|protein tyrosine phosphatase activity|SH3 domain binding			large_intestine(1)|lung(1)|ovary(1)	3						GCAGCTGGTCCCACCCAGGCT	0.587													3	13					0	0	1	0	0
SGIP1	84251	broad.mit.edu	37	1	67154915	67154915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:67154915C>T	uc001dcr.2	+	16	1617	c.1400C>T	c.(1399-1401)TCC>TTC	p.S467F	SGIP1_uc010opd.1_Missense_Mutation_p.S67F|SGIP1_uc001dcs.2_Missense_Mutation_p.S67F|SGIP1_uc001dct.2_Missense_Mutation_p.S67F|SGIP1_uc009wat.2_Missense_Mutation_p.S261F	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	467	Pro-rich.				positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						CGGCCTCCATCCCGGCCAAAG	0.537													22	158					0	0	1	0	0
IL12RB2	3595	broad.mit.edu	37	1	67787457	67787457	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:67787457C>T	uc001ddu.2	+	3	889	c.249C>T	c.(247-249)CAC>CAT	p.H83H	IL12RB2_uc010oqi.1_Silent_p.H83H|IL12RB2_uc010oqj.1_Silent_p.H83H|IL12RB2_uc010oqk.1_RNA|IL12RB2_uc010oql.1_Silent_p.H83H|IL12RB2_uc010oqm.1_Silent_p.H83H|IL12RB2_uc010oqn.1_RNA	NM_001559	NP_001550	Q99665	I12R2_HUMAN	interleukin 12 receptor, beta 2 precursor	83	Extracellular (Potential).				positive regulation of cell proliferation|positive regulation of interferon-gamma production	integral to plasma membrane	cytokine receptor activity			ovary(2)|central_nervous_system(1)	3						ACCATGGCCACTCCCTCAATT	0.428													4	79					0	0	1	0	0
DIRAS3	9077	broad.mit.edu	37	1	68512546	68512546	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:68512546G>A	uc001ded.2	-	2	730	c.435C>T	c.(433-435)TTC>TTT	p.F145F	uc001deb.1_Intron|uc001dec.1_Intron	NM_004675	NP_004666	O95661	DIRA3_HUMAN	DIRAS family, GTP-binding RAS-like 3	145					regulation of cyclin-dependent protein kinase activity|regulation of gene expression by genetic imprinting|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			skin(1)	1						GCACGATGGGGAACTTATGCA	0.527													36	113					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70505260	70505260	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:70505260C>T	uc001dep.2	+	19	3669	c.3639C>T	c.(3637-3639)TCC>TCT	p.S1213S	LRRC7_uc009wbg.2_Silent_p.S497S|LRRC7_uc001deq.2_Silent_p.S454S	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1213						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						ACGGTGCCTCCCAAACCAGGC	0.463													4	18					0	0	1	0	0
TNNI3K	51086	broad.mit.edu	37	1	74957790	74957790	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:74957790C>A	uc001dgf.1	+	23	2242	c.2191C>A	c.(2191-2193)CCT>ACT	p.P731T	TNNI3K_uc001dge.1_Missense_Mutation_p.P832T	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	731						cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						GCTGATGTCTCCTGCATCAAG	0.453													14	66					4.7546e-09	4.81959e-09	1	1	0
TNNI3K	51086	broad.mit.edu	37	1	74957862	74957863	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:74957862_74957863CC>TT	uc001dgf.1	+	23	2314_2315	c.2263_2264CC>TT	c.(2263-2265)CCT>TTT	p.P755F	TNNI3K_uc001dge.1_Missense_Mutation_p.P856F	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	755						cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						CCGGGGAGGACCTGGCCGGAGT	0.5													18	51					0	0	1	0	0
ASB17	127247	broad.mit.edu	37	1	76387881	76387881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:76387881G>A	uc001dhe.1	-	2	705	c.565C>T	c.(565-567)CCT>TCT	p.P189S	ASB17_uc001dhf.1_RNA	NM_080868	NP_543144	Q8WXJ9	ASB17_HUMAN	ankyrin repeat and SOCS box-containing 17	189					intracellular signal transduction					ovary(1)	1						ACTCTCGAAGGGTAGAGTACT	0.363													6	43					0	0	1	0	0
ST6GALNAC5	81849	broad.mit.edu	37	1	77516015	77516015	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:77516015C>T	uc001dhi.2	+	4	919	c.744C>T	c.(742-744)ATC>ATT	p.I248I	ST6GALNAC5_uc010ori.1_3'UTR|ST6GALNAC5_uc009wbw.2_RNA	NM_030965	NP_112227	Q9BVH7	SIA7E_HUMAN	sialyltransferase 7E	248	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			pancreas(1)|skin(1)	2						GTGACAGGATCAATGTTTATG	0.428													6	97					0	0	1	0	0
USP33	23032	broad.mit.edu	37	1	78177434	78177434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:78177434G>A	uc001dht.2	-	22	2844	c.2497C>T	c.(2497-2499)CGG>TGG	p.R833W	USP33_uc001dhs.2_Missense_Mutation_p.R554W|USP33_uc001dhu.2_Missense_Mutation_p.R802W|USP33_uc001dhv.2_Missense_Mutation_p.R638W|USP33_uc001dhw.2_Missense_Mutation_p.R825W	NM_015017	NP_055832	Q8TEY7	UBP33_HUMAN	ubiquitin specific protease 33 isoform 1	833	DUSP 2.				axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(2)|ovary(1)	3						TTTTTTACCCGAATAAAAATT	0.318													6	21					0	0	1	0	0
GIPC2	54810	broad.mit.edu	37	1	78560802	78560802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:78560802C>T	uc001dik.2	+	3	783	c.593C>T	c.(592-594)CCT>CTT	p.P198L		NM_017655	NP_060125	Q8TF65	GIPC2_HUMAN	PDZ domain protein GIPC2	198						cytoplasm				ovary(1)	1						TTAATAGAACCTAAGAAGGCA	0.383													5	44					0	0	1	0	0
PTGFR	5737	broad.mit.edu	37	1	78958547	78958547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:78958547G>A	uc001din.2	+	2	385	c.119G>A	c.(118-120)GGA>GAA	p.G40E	PTGFR_uc001dim.2_Missense_Mutation_p.G40E	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	40	Helical; Name=1; (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	ATGACAGTGGGAATCTTGTCA	0.468													8	98					0	0	1	0	0
ELTD1	64123	broad.mit.edu	37	1	79403901	79403901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:79403901G>A	uc001diq.3	-	5	616	c.460C>T	c.(460-462)CTT>TTT	p.L154F		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	154	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		GTTGGTGAAAGATCTGTCACA	0.338													7	17					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82402474	82402474	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:82402474C>T	uc001dit.3	+	5	531	c.350C>T	c.(349-351)CCT>CTT	p.P117L	LPHN2_uc001dis.2_Missense_Mutation_p.P117L|LPHN2_uc001diu.2_Missense_Mutation_p.P117L|LPHN2_uc001div.2_Missense_Mutation_p.P117L|LPHN2_uc009wcd.2_Missense_Mutation_p.P117L	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	117	Extracellular (Potential).|SUEL-type lectin.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		GATCCATGTCCTGGAACATAC	0.353													7	25					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82456558	82456558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:82456558C>T	uc001dit.3	+	21	4122	c.3941C>T	c.(3940-3942)TCT>TTT	p.S1314F	LPHN2_uc001dis.2_Missense_Mutation_p.S294F|LPHN2_uc001diu.2_Missense_Mutation_p.S1314F|LPHN2_uc001div.2_3'UTR|LPHN2_uc009wcd.2_3'UTR|LPHN2_uc001diw.2_Missense_Mutation_p.S941F	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	1370	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AACAGAGACTCTCTTTATACA	0.517													3	10					0	0	1	0	0
CYR61	3491	broad.mit.edu	37	1	86047912	86047912	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:86047912G>A	uc001dle.2	+	3	803	c.579G>A	c.(577-579)ACG>ACA	p.T193T	CYR61_uc001dlg.2_Silent_p.T22T|CYR61_uc009wcp.1_5'Flank	NM_001554	NP_001545	O00622	CYR61_HUMAN	cysteine-rich, angiogenic inducer, 61 precursor	193					cell proliferation|chemotaxis|positive regulation of BMP signaling pathway|positive regulation of cell migration|positive regulation of osteoblast differentiation|positive regulation of osteoblast proliferation|positive regulation of protein kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell growth|regulation of ERK1 and ERK2 cascade|wound healing, spreading of cells	extracellular region	heparin binding|insulin-like growth factor binding			central_nervous_system(1)	1				all cancers(265;0.0216)|Epithelial(280;0.0441)		TGGAGTTGACGAGAAACAATG	0.527											OREG0013583	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	106					0	0	1	0	0
COL24A1	255631	broad.mit.edu	37	1	86283740	86283740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:86283740G>A	uc001dlj.2	-	46	3862	c.3820C>T	c.(3820-3822)CCT>TCT	p.P1274S	COL24A1_uc001dli.2_Missense_Mutation_p.P410S|COL24A1_uc010osd.1_Missense_Mutation_p.P574S|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1274	Collagen-like 14.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TTCCCAGAAGGACCAGGAGCT	0.408													11	103					0	0	1	0	0
COL24A1	255631	broad.mit.edu	37	1	86453318	86453318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:86453318C>T	uc001dlj.2	-	20	2372	c.2330G>A	c.(2329-2331)GGG>GAG	p.G777E	COL24A1_uc010osd.1_Missense_Mutation_p.G77E|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	777	Collagen-like 4.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TCCAGGAATCCCAATATCTCC	0.348													3	8					0	0	1	0	0
GBP1	2633	broad.mit.edu	37	1	89523814	89523814	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:89523814C>T	uc001dmx.2	-	6	955	c.735G>A	c.(733-735)AGG>AGA	p.R245R		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	245					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		GGGCAAGCTTCCTGCGGTGAA	0.438													7	110					0	0	1	0	0
GBP7	388646	broad.mit.edu	37	1	89616112	89616112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:89616112C>T	uc001dna.2	-	6	911	c.772G>A	c.(772-774)GAT>AAT	p.D258N	GBP2_uc001dmy.1_RNA	NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	258						integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		AAATTACTATCCAGTTGGTCT	0.408													3	18					0	0	1	0	0
GBP4	115361	broad.mit.edu	37	1	89661103	89661103	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:89661103G>A	uc001dnb.2	-	3	356	c.240C>T	c.(238-240)TTC>TTT	p.F80F		NM_052941	NP_443173	Q96PP9	GBP4_HUMAN	guanylate binding protein 4	80						cytoplasm	GTP binding|GTPase activity				0				all cancers(265;0.00723)|Epithelial(280;0.0291)		AGCCCAGAGGGAAGCCTGCAG	0.512													11	50					0	0	1	0	0
GBP6	163351	broad.mit.edu	37	1	89846009	89846009	+	Silent	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:89846009A>G	uc001dnf.2	+	6	964	c.690A>G	c.(688-690)AAA>AAG	p.K230K	GBP6_uc010ost.1_Silent_p.K100K	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6	230							GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		TCTTTCCAAAACGGAAGTGTT	0.413													10	31					0	0	1	0	0
LOC400759	400759	broad.mit.edu	37	1	89889921	89889921	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:89889921G>A	uc009wcy.1	+	5		c.662G>A				NR_003133				Homo sapiens cDNA, FLJ17004.												0						GAGTTATCAGGAACACTTGAA	0.463													37	333					0	0	1	0	0
LOC400759	400759	broad.mit.edu	37	1	89889961	89889961	+	RNA	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:89889961G>T	uc009wcy.1	+	5		c.702G>T				NR_003133				Homo sapiens cDNA, FLJ17004.												0						GAGAGCGACAGGGTCCAGTTG	0.443													6	237					1	1	1	1	0
BRDT	676	broad.mit.edu	37	1	92441921	92441921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:92441921C>T	uc001dok.3	+	5	893	c.544C>T	c.(544-546)CCT>TCT	p.P182S	BRDT_uc001dol.3_Missense_Mutation_p.P182S|BRDT_uc010osz.1_Missense_Mutation_p.P186S|BRDT_uc009wdf.2_Missense_Mutation_p.P109S|BRDT_uc010ota.1_Missense_Mutation_p.P136S|BRDT_uc010otb.1_Missense_Mutation_p.P136S|BRDT_uc001dom.3_Missense_Mutation_p.P182S	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	182					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		TTCTGTATTTCCTAAGACATC	0.393													8	41					0	0	1	0	0
BRDT	676	broad.mit.edu	37	1	92442784	92442784	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:92442784A>G	uc001dok.3	+	6	1152	c.803A>G	c.(802-804)AAA>AGA	p.K268R	BRDT_uc001dol.3_Missense_Mutation_p.K268R|BRDT_uc010osz.1_Missense_Mutation_p.K272R|BRDT_uc009wdf.2_Missense_Mutation_p.K195R|BRDT_uc010ota.1_Missense_Mutation_p.K222R|BRDT_uc010otb.1_Missense_Mutation_p.K222R|BRDT_uc001dom.3_Missense_Mutation_p.K268R	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	268					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		AAGACTGTTAAAGTAACTGAA	0.343													11	37					0	0	1	0	0
BRDT	676	broad.mit.edu	37	1	92445249	92445249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:92445249G>A	uc001dok.3	+	8	1571	c.1222G>A	c.(1222-1224)GAA>AAA	p.E408K	BRDT_uc001dol.3_Missense_Mutation_p.E408K|BRDT_uc010osz.1_Missense_Mutation_p.E412K|BRDT_uc009wdf.2_Missense_Mutation_p.E335K|BRDT_uc010ota.1_Missense_Mutation_p.E362K|BRDT_uc010otb.1_Missense_Mutation_p.E362K|BRDT_uc001dom.3_Missense_Mutation_p.E408K	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	408					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		AGCCTCCTCTGAAGGGAACTC	0.393													7	79					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94496618	94496618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:94496618G>A	uc001dqh.2	-	28	4291	c.4187C>T	c.(4186-4188)CCT>CTT	p.P1396L		NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1396	Helical; (Potential).				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TTCGCCAAAAGGAGGGATAAC	0.517													7	22					0	0	1	0	0
F3	2152	broad.mit.edu	37	1	94998772	94998772	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:94998772C>T	uc001dqr.2	-	4	644	c.465G>A	c.(463-465)GTG>GTA	p.V155V	F3_uc001dqp.2_RNA|F3_uc001dqq.2_RNA|F3_uc001dqs.2_Silent_p.V155V	NM_001993	NP_001984	P13726	TF_HUMAN	coagulation factor III precursor	155	Extracellular (Potential).				activation of caspase activity|activation of plasma proteins involved in acute inflammatory response|anti-apoptosis|blood coagulation, extrinsic pathway|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of protein kinase B signaling cascade	extracellular matrix|extracellular space|integral to membrane	cell surface binding|phospholipid binding|protease binding			central_nervous_system(1)	1		all_lung(203;0.00106)|Lung NSC(277;0.00475)		all cancers(265;0.0232)|Epithelial(280;0.121)	Coagulation factor VIIa(DB00036)	CGGTCACATTCACTTTTGTTC	0.403													4	57					0	0	1	0	0
PTBP2	58155	broad.mit.edu	37	1	97236284	97236284	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:97236284C>T	uc001drq.2	+	5	555	c.309C>T	c.(307-309)ACC>ACT	p.T103T	PTBP2_uc001drn.2_Silent_p.T103T|PTBP2_uc001dro.2_Silent_p.T103T|PTBP2_uc010otz.1_Silent_p.T114T|PTBP2_uc001drp.2_RNA|PTBP2_uc009wdw.2_Silent_p.T51T|PTBP2_uc001drr.2_Silent_p.T103T|PTBP2_uc010oua.1_Silent_p.T111T|PTBP2_uc001dru.2_RNA|PTBP2_uc001drm.2_Silent_p.T103T	NM_021190	NP_067013	Q9UKA9	PTBP2_HUMAN	polypyrimidine tract binding protein 2	103	RRM 1.						nucleotide binding				0		all_epithelial(167;2.95e-05)|all_lung(203;0.000396)|Lung NSC(277;0.00171)		all cancers(265;0.0582)|Epithelial(280;0.0716)|Colorectal(170;0.0879)|KIRC - Kidney renal clear cell carcinoma(1967;0.202)		AACTAGCAACCGAGGAAGCAG	0.294													4	45					0	0	1	0	0
DPYD	1806	broad.mit.edu	37	1	97547928	97547928	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:97547928G>A	uc001drv.2	-	22	3002	c.2865C>T	c.(2863-2865)AAC>AAT	p.N955N		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	955	4Fe-4S ferredoxin-type 2.				'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	ATTTACCACAGTTGATACACA	0.398													8	39					0	0	1	0	0
DPYD	1806	broad.mit.edu	37	1	98165056	98165056	+	Silent	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:98165056A>T	uc001drv.2	-	6	668	c.531T>A	c.(529-531)CCT>CCA	p.P177P	DPYD_uc010oub.1_RNA	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	177					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TTTCTGGGGGAGGCAGCGAAG	0.428													4	36					0	0	1	0	0
PALMD	54873	broad.mit.edu	37	1	100127916	100127916	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:100127916G>A	uc001dsg.2	+	2	530	c.87G>A	c.(85-87)CTG>CTA	p.L29L	PALMD_uc001dsf.2_Silent_p.L29L	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	29	Potential.				regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		AGAAGCGTCTGAAAATAGAGG	0.269													8	17					0	0	1	0	0
FRRS1	391059	broad.mit.edu	37	1	100183020	100183020	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:100183020G>A	uc001dsh.1	-	11	1784	c.1182C>T	c.(1180-1182)TTC>TTT	p.F394F		NM_001013660	NP_001013682	Q6ZNA5	FRRS1_HUMAN	stromal cell derived factor receptor 2 homolog	394	Cytochrome b561.				electron transport chain|transport	integral to membrane	ferric-chelate reductase activity|metal ion binding			skin(1)	1		all_epithelial(167;2.09e-06)|all_lung(203;0.000435)|Lung NSC(277;0.00201)		Epithelial(280;0.0718)|all cancers(265;0.126)|COAD - Colon adenocarcinoma(174;0.148)|Lung(183;0.206)		CTGGCTTGAAGAACCGGGCAA	0.408													4	86					0	0	1	0	0
AGL	178	broad.mit.edu	37	1	100366352	100366352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:100366352C>T	uc001dsi.1	+	26	3923	c.3523C>T	c.(3523-3525)CTC>TTC	p.L1175F	AGL_uc001dsj.1_Missense_Mutation_p.L1175F|AGL_uc001dsk.1_Missense_Mutation_p.L1175F|AGL_uc001dsl.1_Missense_Mutation_p.L1175F|AGL_uc001dsm.1_Missense_Mutation_p.L1159F|AGL_uc001dsn.1_Missense_Mutation_p.L1158F	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	1175	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		TCTAGACATTCTCAAGTGCCC	0.403													9	127					0	0	1	0	0
AGL	178	broad.mit.edu	37	1	100379259	100379259	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:100379259C>T	uc001dsi.1	+	30	4526	c.4126C>T	c.(4126-4128)CAG>TAG	p.Q1376*	AGL_uc001dsj.1_Nonsense_Mutation_p.Q1376*|AGL_uc001dsk.1_Nonsense_Mutation_p.Q1376*|AGL_uc001dsl.1_Nonsense_Mutation_p.Q1376*|AGL_uc001dsm.1_Nonsense_Mutation_p.Q1360*|AGL_uc001dsn.1_Nonsense_Mutation_p.Q1359*	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	1376	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		GTGTGACTATCAGCTCAGGCC	0.373													4	39					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103355095	103355095	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:103355095C>T	uc001dul.2	-	59	4698	c.4380G>A	c.(4378-4380)CTG>CTA	p.L1460L	COL11A1_uc001duk.2_Silent_p.L656L|COL11A1_uc001dum.2_Silent_p.L1472L|COL11A1_uc001dun.2_Silent_p.L1421L|COL11A1_uc009weh.2_Silent_p.L1344L	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1460	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GAGGACCAATCAGGCCAATTA	0.398													5	18					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103488468	103488468	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:103488468G>A	uc001dul.2	-	8	1393	c.1075C>T	c.(1075-1077)CTA>TTA	p.L359L	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Silent_p.L371L|COL11A1_uc001dun.2_Silent_p.L320L|COL11A1_uc009weh.2_Intron	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	359	Nonhelical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TTTTCATATAGTGTATCCTCA	0.313													16	23					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103491840	103491840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:103491840C>T	uc001dul.2	-	6	1147	c.829G>A	c.(829-831)GAG>AAG	p.E277K	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Intron|COL11A1_uc001dun.2_Intron|COL11A1_uc009weh.2_Missense_Mutation_p.E277K	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	277	Nonhelical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TCTTTATACTCTGCTTCCCCA	0.413													7	39					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103540236	103540236	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:103540236T>A	uc001dul.2	-	4	907	c.589A>T	c.(589-591)ATT>TTT	p.I197F	COL11A1_uc001dum.2_Missense_Mutation_p.I197F|COL11A1_uc001dun.2_Missense_Mutation_p.I197F|COL11A1_uc009weh.2_Missense_Mutation_p.I197F	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	197	TSP N-terminal.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GTATCAACAATTGCTCTCTCA	0.373													3	8					0	0	1	0	0
AMY2B	280	broad.mit.edu	37	1	104116342	104116342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:104116342C>T	uc001duq.2	+	6	1142	c.526C>T	c.(526-528)CGT>TGT	p.R176C	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.R176C|AMY2B_uc001dus.1_5'Flank	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	176					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		CAGAGATTGTCGTCTGGTTGG	0.363													5	128					0	0	1	0	0
AKNAD1	254268	broad.mit.edu	37	1	109366204	109366204	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:109366204C>T	uc001dwa.2	-	12	2312	c.2043G>A	c.(2041-2043)AGG>AGA	p.R681R	AKNAD1_uc010ovb.1_Silent_p.R388R|AKNAD1_uc001dwb.2_RNA	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	681										ovary(3)	3						TTGGTTCTTTCCTGCAGGCTC	0.463													9	47					0	0	1	0	0
SARS	6301	broad.mit.edu	37	1	109773609	109773609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:109773609C>T	uc001dwu.1	+	5	632	c.557C>T	c.(556-558)GCC>GTC	p.A186V	SARS_uc001dwt.1_Missense_Mutation_p.A186V|SARS_uc001dwv.1_Missense_Mutation_p.A186V|SARS_uc001dww.1_Missense_Mutation_p.A119V|SARS_uc001dwx.1_Intron|SARS_uc009wfa.1_Missense_Mutation_p.A186V|SARS_uc001dwy.1_Missense_Mutation_p.A11V|SARS_uc001dwz.1_Missense_Mutation_p.A11V	NM_006513	NP_006504	P49591	SYSC_HUMAN	seryl-tRNA synthetase	186					seryl-tRNA aminoacylation|tRNA processing	cytosol	ATP binding|protein binding|RNA binding|serine-tRNA ligase activity			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0301)|Lung(183;0.0677)|COAD - Colon adenocarcinoma(174;0.116)|Epithelial(280;0.233)	L-Serine(DB00133)	GAAAAGGGGGCCGTGGTGGCT	0.433													95	332					0	0	1	0	0
CELSR2	1952	broad.mit.edu	37	1	109795158	109795158	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:109795158C>T	uc001dxa.3	+	1	2518	c.2457C>T	c.(2455-2457)TCC>TCT	p.S819S		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	819	Extracellular (Potential).|Cadherin 7.				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		TGCGAGACTCCTACCAGGGCA	0.547													28	503					0	0	1	0	0
CELSR2	1952	broad.mit.edu	37	1	109795453	109795453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:109795453C>T	uc001dxa.3	+	1	2813	c.2752C>T	c.(2752-2754)CCC>TCC	p.P918S		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	918	Extracellular (Potential).|Cadherin 7.				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		GAATGACAATCCCCCTGTCTT	0.567													46	781					0	0	1	0	0
CELSR2	1952	broad.mit.edu	37	1	109804458	109804458	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:109804458C>T	uc001dxa.3	+	5	4387	c.4326C>T	c.(4324-4326)TTC>TTT	p.F1442F		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	1442	Extracellular (Potential).|Laminin G-like 1.				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		TGTCCCCATTCGTGCCCGGAG	0.592													31	168					0	0	1	0	0
CELSR2	1952	broad.mit.edu	37	1	109808508	109808508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:109808508C>T	uc001dxa.3	+	14	5940	c.5879C>T	c.(5878-5880)CCT>CTT	p.P1960L		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	1960	Laminin EGF-like.|Extracellular (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		TGTGACAACCCTTTTGCTGAG	0.607													84	343					0	0	1	0	0
CELSR2	1952	broad.mit.edu	37	1	109812051	109812051	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:109812051C>T	uc001dxa.3	+	21	6879	c.6818C>T	c.(6817-6819)CCC>CTC	p.P2273L		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	2273	Extracellular (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		ATCAGAGTCCCCAAACGCCCG	0.632													65	263					0	0	1	0	0
MYBPHL	343263	broad.mit.edu	37	1	109840099	109840099	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:109840099G>A	uc001dxk.1	-	3	425	c.375C>T	c.(373-375)CTC>CTT	p.L125L	MYBPHL_uc010ovh.1_Intron|MYBPHL_uc001dxl.2_Intron	NM_001010985	NP_001010985	A2RUH7	MBPHL_HUMAN	myosin binding protein H-like	125	Ig-like C2-type 1.									ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(203;0.00519)|all_epithelial(167;0.00575)|Lung NSC(277;0.00822)		Colorectal(144;0.0306)|Lung(183;0.0681)|COAD - Colon adenocarcinoma(174;0.117)|Epithelial(280;0.197)|all cancers(265;0.225)		GCTGCACGCGGAGTTGGTAGC	0.622													36	585					0	0	1	0	0
PSMA5	5686	broad.mit.edu	37	1	109964529	109964529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:109964529G>A	uc001dxn.2	-	2	134	c.49C>T	c.(49-51)CCC>TCC	p.P17S	PSMA5_uc010ovj.1_Intron	NM_002790	NP_002781	P28066	PSA5_HUMAN	proteasome alpha 5 subunit	17					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	protein binding|threonine-type endopeptidase activity				0		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.045)|Colorectal(144;0.116)|Epithelial(280;0.187)|all cancers(265;0.196)|LUSC - Lung squamous cell carcinoma(189;0.235)		CTTCCTTCGGGAGAAAAAGTA	0.338													10	171					0	0	1	0	0
SYPL2	284612	broad.mit.edu	37	1	110018316	110018316	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:110018316C>T	uc001dxp.2	+	3	609	c.243C>T	c.(241-243)GGC>GGT	p.G81G	SYPL2_uc001dxo.2_Silent_p.G81G|SYPL2_uc010ovk.1_Silent_p.G81G|SYPL2_uc001dxq.2_5'Flank	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	81	Vesicular (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		TTGCATTTGGCTATCCCTTCA	0.537													26	364					0	0	1	0	0
SYPL2	284612	broad.mit.edu	37	1	110020512	110020512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:110020512G>A	uc001dxp.2	+	5	895	c.529G>A	c.(529-531)GAT>AAT	p.D177N	SYPL2_uc001dxo.2_Missense_Mutation_p.D177N|SYPL2_uc010ovk.1_Intron|SYPL2_uc001dxq.2_Missense_Mutation_p.D85N	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	177	Vesicular (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		GGGCCTGACCGATGTCAAGGG	0.607													65	616					0	0	1	0	0
AMIGO1	57463	broad.mit.edu	37	1	110050539	110050539	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:110050539C>T	uc001dxx.3	-	2	1378	c.996G>A	c.(994-996)CAG>CAA	p.Q332Q		NM_020703	NP_065754	Q86WK6	AMGO1_HUMAN	AMIGO protein precursor	332	Ig-like C2-type.|Extracellular (Potential).				axonal fasciculation|heterophilic cell-cell adhesion|homophilic cell adhesion|myelination|positive regulation of axonogenesis	axon|integral to membrane				ovary(1)|breast(1)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0182)|Epithelial(280;0.046)|all cancers(265;0.0492)|READ - Rectum adenocarcinoma(129;0.0689)|LUSC - Lung squamous cell carcinoma(189;0.227)		CGTCCTCGACCTGCACCTGCT	0.502													6	101					0	0	1	0	0
GPR61	83873	broad.mit.edu	37	1	110085848	110085848	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:110085848C>T	uc001dxy.2	+	2	887	c.204C>T	c.(202-204)GCC>GCT	p.A68A		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	68	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		CCGTGATCGCCAAGACGCCTG	0.602													8	110					0	0	1	0	0
GNAT2	2780	broad.mit.edu	37	1	110146621	110146621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:110146621C>T	uc001dya.2	-	7	1039	c.826G>A	c.(826-828)GAA>AAA	p.E276K		NM_005272	NP_005263	P19087	GNAT2_HUMAN	guanine nucleotide binding protein, alpha	276					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|rhodopsin mediated phototransduction	heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment membrane	G-protein beta/gamma-subunit complex binding|G-protein coupled photoreceptor activity|G-protein-coupled receptor binding|GTP binding|GTPase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0422)|Colorectal(144;0.108)|Epithelial(280;0.125)|all cancers(265;0.129)|LUSC - Lung squamous cell carcinoma(189;0.227)		TTGATTTTTTCCTCAAAGAGG	0.393													6	39					0	0	1	0	0
AMPD2	271	broad.mit.edu	37	1	110168004	110168004	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:110168004C>T	uc009wfh.1	+	3	875	c.333C>T	c.(331-333)TTC>TTT	p.F111F	AMPD2_uc009wfg.1_RNA|AMPD2_uc001dyb.1_Silent_p.F30F|AMPD2_uc001dyc.1_Silent_p.F111F|AMPD2_uc010ovr.1_Intron|AMPD2_uc010ovs.1_5'UTR|AMPD2_uc001dyd.1_5'Flank	NM_004037	NP_004028	Q01433	AMPD2_HUMAN	adenosine monophosphate deaminase 2 (isoform L)	111					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|breast(1)	3		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0425)|all cancers(265;0.0884)|Colorectal(144;0.109)|Epithelial(280;0.111)|LUSC - Lung squamous cell carcinoma(189;0.228)		TCAAGCACTTCCCGCTCGACC	0.677													27	94					0	0	1	0	0
GSTM3	2947	broad.mit.edu	37	1	110282108	110282108	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:110282108G>A	uc001dyo.2	-	4	442	c.132C>T	c.(130-132)GAC>GAT	p.D44D	GSTM3_uc001dyp.2_Silent_p.D41D|GSTM3_uc010ovv.1_Silent_p.D44D	NM_000849	NP_000840	P21266	GSTM3_HUMAN	glutathione S-transferase mu 3	44	GST N-terminal.				establishment of blood-nerve barrier|glutathione metabolic process|response to estrogen stimulus	cytoplasm	glutathione transferase activity|identical protein binding				0		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Colorectal(144;0.0339)|Lung(183;0.0426)|all cancers(265;0.113)|Epithelial(280;0.125)|COAD - Colon adenocarcinoma(174;0.134)|LUSC - Lung squamous cell carcinoma(189;0.228)	Glutathione(DB00143)	TTCGATCATAGTCAGGAGCTG	0.463													56	256					0	0	1	0	0
EPS8L3	79574	broad.mit.edu	37	1	110293935	110293935	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:110293935G>A	uc001dyr.1	-	17	1747	c.1602C>T	c.(1600-1602)GTC>GTT	p.V534V	EPS8L3_uc001dys.1_Silent_p.V504V|EPS8L3_uc001dyq.1_Silent_p.V535V|EPS8L3_uc009wfm.1_Silent_p.V471V	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	534						cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		GCCAGTCTGTGACCTCTTCAG	0.537													11	39					0	0	1	0	0
EPS8L3	79574	broad.mit.edu	37	1	110294772	110294772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:110294772C>T	uc001dyr.1	-	15	1424	c.1279G>A	c.(1279-1281)GAG>AAG	p.E427K	EPS8L3_uc001dys.1_Intron|EPS8L3_uc001dyq.1_Missense_Mutation_p.E428K|EPS8L3_uc009wfm.1_Intron|EPS8L3_uc009wfn.1_Intron	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	427						cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		TGTGTCTTCTCCTGAGGAAAG	0.552													39	194					0	0	1	0	0
CSF1	1435	broad.mit.edu	37	1	110465858	110465858	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:110465858C>T	uc001dyu.2	+	6	1028	c.615C>T	c.(613-615)GTC>GTT	p.V205V	CSF1_uc001dyt.2_Silent_p.V205V|CSF1_uc001dyv.3_Intron|CSF1_uc001dyw.3_Silent_p.V205V	NM_172212	NP_757351	P09603	CSF1_HUMAN	colony stimulating factor 1 isoform a precursor	205	Lumenal (Potential).				cell proliferation|developmental process involved in reproduction|macrophage differentiation|monocyte activation|osteoclast differentiation|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of cellular protein metabolic process|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of monocyte differentiation|positive regulation of mononuclear cell proliferation|positive regulation of protein kinase activity	extracellular space|integral to membrane|perinuclear region of cytoplasm|plasma membrane|receptor complex	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding|protein homodimerization activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Acute lymphoblastic leukemia(138;0.204)		Lung(183;0.0238)|Colorectal(144;0.112)|all cancers(265;0.117)|Epithelial(280;0.127)|LUSC - Lung squamous cell carcinoma(189;0.135)		CGGCCTCTGTCTCCCCTCATC	0.607											OREG0013645	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	97					0	0	1	0	0
SLC6A17	388662	broad.mit.edu	37	1	110738354	110738354	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:110738354T>G	uc009wfq.2	+	10	2100	c.1639T>G	c.(1639-1641)TAT>GAT	p.Y547D		NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	547	Helical; Name=10; (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		GGCCTGGATTTATGGAACCAA	0.498													3	44					0	0	1	0	0
KCNA10	3744	broad.mit.edu	37	1	111060743	111060743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:111060743C>T	uc001dzt.1	-	1	1055	c.667G>A	c.(667-669)GTG>ATG	p.V223M		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	223	Helical; Name=Segment S1; (Potential).					voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		ACAACCAACACCGAGACCACG	0.552													9	41					0	0	1	0	0
KCNA3	3738	broad.mit.edu	37	1	111216458	111216458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:111216458C>T	uc001dzv.1	-	1	1198	c.974G>A	c.(973-975)CGA>CAA	p.R325Q		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	325						voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		CATGATGTTTCGCGAGAAGGT	0.532													12	88					0	0	1	0	0
CD53	963	broad.mit.edu	37	1	111440430	111440430	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:111440430G>A	uc001dzw.2	+	8	676	c.505_splice	c.e8-1	p.G169_splice	CD53_uc001dzx.2_Splice_Site_p.G169_splice|CD53_uc010owa.1_Splice_Site_p.G110_splice|CD53_uc001dzy.2_Intron	NM_001040033	NP_001035122	P19397	CD53_HUMAN	CD53 antigen						signal transduction	integral to membrane|plasma membrane					0		all_cancers(81;1.06e-05)|all_epithelial(167;1.95e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0264)|Colorectal(144;0.0375)|all cancers(265;0.11)|Epithelial(280;0.114)|COAD - Colon adenocarcinoma(174;0.141)|LUSC - Lung squamous cell carcinoma(189;0.144)		ATGTCTTCTAGGGTTGCTATG	0.343													7	42					0	0	1	0	0
CHIA	27159	broad.mit.edu	37	1	111861114	111861114	+	Splice_Site	SNP	G	A	A	rs144676218		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:111861114G>A	uc001eas.2	+	9	833	c.730_splice	c.e9-1	p.D244_splice	CHIA_uc001ear.2_Splice_Site_p.D136_splice|CHIA_uc001eaq.2_Splice_Site_p.D136_splice|CHIA_uc009wgc.2_Splice_Site_p.D136_splice|CHIA_uc001eat.2_Splice_Site_p.D83_splice|CHIA_uc001eav.2_Splice_Site_p.D83_splice|CHIA_uc001eau.2_Splice_Site_p.D83_splice|CHIA_uc009wgd.2_Splice_Site_p.D83_splice	NM_201653	NP_970615	Q9BZP6	CHIA_HUMAN	acidic chitinase isoform c						apoptosis|cell wall chitin metabolic process|chitin catabolic process|digestion|immune response|positive regulation of chemokine secretion|production of molecular mediator involved in inflammatory response|response to acid|response to fungus	cytoplasm|extracellular space	cation binding|chitin binding|chitinase activity|kinase binding|lysozyme activity|sugar binding			ovary(1)	1		all_cancers(81;3.23e-05)|all_epithelial(167;1.2e-05)|all_lung(203;0.000154)|Lung NSC(277;0.000304)		Colorectal(144;0.0115)|Lung(183;0.0292)|COAD - Colon adenocarcinoma(174;0.0314)|all cancers(265;0.0477)|Epithelial(280;0.0918)|LUSC - Lung squamous cell carcinoma(189;0.154)		TGACATTGCAGGATTATGTCA	0.463													5	55					0	0	1	0	0
WDR77	79084	broad.mit.edu	37	1	111991770	111991770	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:111991770G>A	uc001ebb.2	-	1	61	c.22C>T	c.(22-24)CCC>TCC	p.P8S	WDR77_uc010owd.1_RNA|WDR77_uc010owe.1_Missense_Mutation_p.P8S|ATP5F1_uc009wgf.1_Intron|ATP5F1_uc001ebc.2_5'UTR|ATP5F1_uc001ebd.3_5'Flank	NM_024102	NP_077007	Q9BQA1	MEP50_HUMAN	WD repeat domain 77	8					ncRNA metabolic process|spliceosomal snRNP assembly	cytosol|nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding				0		all_cancers(81;0.000902)|all_epithelial(167;0.00056)|all_lung(203;0.00277)|Lung NSC(277;0.0043)		Lung(183;0.0238)|Colorectal(144;0.0296)|all cancers(265;0.0488)|Epithelial(280;0.0732)|COAD - Colon adenocarcinoma(174;0.114)|LUSC - Lung squamous cell carcinoma(189;0.135)		GGCACTAGGGGGGGTGGGGTT	0.672													6	13					0	0	1	0	0
ADORA3	140	broad.mit.edu	37	1	112045866	112045866	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:112045866G>A	uc001ebh.3	-	1	878	c.111C>T	c.(109-111)GTC>GTT	p.V37V	ADORA3_uc001ebg.3_Intron|ADORA3_uc001ebf.2_Silent_p.V37V	NM_000677	NP_000668	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 2	37	Helical; Name=1; (By similarity).				activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	GGTTCAGCTTGACCACGCAGA	0.522													7	26					0	0	1	0	0
SLC16A1	6566	broad.mit.edu	37	1	113460261	113460261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:113460261G>A	uc001ecx.2	-	4	1599	c.767C>T	c.(766-768)ACC>ATC	p.T256I	SLC16A1_uc001ecy.2_Missense_Mutation_p.T256I|SLC16A1_uc001ecz.2_Missense_Mutation_p.T256I	NM_003051	NP_003042	P53985	MOT1_HUMAN	solute carrier family 16, member 1	256	Cytoplasmic (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	integral to membrane|membrane fraction|plasma membrane	mevalonate transmembrane transporter activity|protein binding|secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	Lung SC(450;0.246)	all_cancers(81;7.6e-08)|all_epithelial(167;3.82e-07)|all_lung(203;3.07e-05)|Lung NSC(69;5.51e-05)|Prostate(1639;0.00232)		Epithelial(280;7.31e-13)|all cancers(265;5.1e-10)|Kidney(133;5.29e-07)|KIRC - Kidney renal clear cell carcinoma(1967;8.63e-06)|OV - Ovarian serous cystadenocarcinoma(397;1.48e-05)|BRCA - Breast invasive adenocarcinoma(282;0.003)|LUSC - Lung squamous cell carcinoma(189;0.008)|Lung(183;0.00948)|Colorectal(144;0.0325)|COAD - Colon adenocarcinoma(174;0.0643)	Pyruvic acid(DB00119)	GGTGAATAGGGTTAAGTCCAG	0.383													7	52					0	0	1	0	0
PTPN22	26191	broad.mit.edu	37	1	114372269	114372269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:114372269G>A	uc001eds.2	-	18	2325	c.2195C>T	c.(2194-2196)TCA>TTA	p.S732L	PTPN22_uc009wgq.2_Missense_Mutation_p.S677L|PTPN22_uc010owo.1_Missense_Mutation_p.S488L|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.S732L|PTPN22_uc009wgs.2_Missense_Mutation_p.S605L	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	732					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGAAGATGTTGAATTTTCCAT	0.363													32	81					0	0	1	0	0
AP4B1	10717	broad.mit.edu	37	1	114438613	114438613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:114438613G>A	uc001eeb.2	-	9	1701	c.1558C>T	c.(1558-1560)CGC>TGC	p.R520C	uc001edv.1_Intron|AP4B1_uc001eec.2_Missense_Mutation_p.R352C|AP4B1_uc001eed.2_Missense_Mutation_p.R520C|AP4B1_uc010owp.1_Missense_Mutation_p.R421C|AP4B1_uc001eea.1_3'UTR|AP4B1_uc001eee.1_Missense_Mutation_p.R47C	NM_006594	NP_006585	Q9Y6B7	AP4B1_HUMAN	adaptor-related protein complex 4, beta 1	520					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|soluble fraction|trans-Golgi network	protein binding|protein transporter activity			ovary(3)|central_nervous_system(1)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.1e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAGAGGAGGCGATAATAGAAG	0.438													10	26					0	0	1	0	0
HIPK1	204851	broad.mit.edu	37	1	114515914	114515914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:114515914C>T	uc001eem.2	+	16	3574	c.3413C>T	c.(3412-3414)TCC>TTC	p.S1138F	HIPK1_uc001een.2_Missense_Mutation_p.S1138F|HIPK1_uc001eeo.2_Missense_Mutation_p.S764F|HIPK1_uc001eep.2_Missense_Mutation_p.S744F|HIPK1_uc001eeq.2_Missense_Mutation_p.S430F	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	1138					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCACAGGGTTCCTCAAGGCAT	0.587													37	107					0	0	1	0	0
OLFML3	56944	broad.mit.edu	37	1	114524263	114524263	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:114524263T>A	uc001eer.1	+	3	1202	c.1093T>A	c.(1093-1095)TTT>ATT	p.F365I	OLFML3_uc001ees.1_Missense_Mutation_p.F345I|OLFML3_uc001eet.1_Missense_Mutation_p.F221I	NM_020190	NP_064575	Q9NRN5	OLFL3_HUMAN	olfactomedin-like 3 precursor	365	Olfactomedin-like.				multicellular organismal development	extracellular region					0	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACTCCCTTATTTTCCCCGCAG	0.582													5	51					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115079130	115079130	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:115079130G>A	uc001eez.2	-	29		c.4513C>T				NM_198459		Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C											skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GAAGTGGGCAGCAAGATCTAC	0.493													7	121					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115143572	115143572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:115143572C>T	uc001efd.1	-	14	2527	c.1825G>A	c.(1825-1827)GAA>AAA	p.E609K	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.E552K	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	609	DENN.									skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTCTCTACTTCATCCAGAATC	0.403													5	45					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115147576	115147576	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:115147576G>A	uc001efd.1	-	11	2336	c.1634C>T	c.(1633-1635)TCA>TTA	p.S545L	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.S488L	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	545	UDENN.									skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCAGTCCTTTGAATCAGGAAA	0.353													4	17					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115168137	115168137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:115168137G>A	uc001efd.1	-	4	1171	c.469C>T	c.(469-471)CCC>TCC	p.P157S	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.P157S	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	157										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTATCTGGGGGAAGTGCTTCT	0.368													4	30					0	0	1	0	0
AMPD1	270	broad.mit.edu	37	1	115219992	115219992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:115219992C>T	uc001efe.1	-	10	1452	c.1368G>A	c.(1366-1368)ATG>ATA	p.M456I	AMPD1_uc001eff.1_Missense_Mutation_p.M452I	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	456					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	GAACCTGGATCATCCATGTCA	0.537													5	57					0	0	1	0	0
AMPD1	270	broad.mit.edu	37	1	115231335	115231335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:115231335G>A	uc001efe.1	-	3	146	c.62C>T	c.(61-63)GCT>GTT	p.A21V	AMPD1_uc001eff.1_Missense_Mutation_p.A17V	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	21					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	CACTTTTTCAGCAAAGTTGCG	0.408													8	90					0	0	1	0	0
PTGFRN	5738	broad.mit.edu	37	1	117484384	117484384	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:117484384C>T	uc001egv.1	+	2	234	c.97C>T	c.(97-99)CGA>TGA	p.R33*		NM_020440	NP_065173	Q9P2B2	FPRP_HUMAN	prostaglandin F2 receptor negative regulator	33	Extracellular (Potential).|Ig-like C2-type 1.					endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	protein binding			liver(1)	1	Lung SC(450;0.225)	all_cancers(81;0.00104)|all_lung(203;8.97e-05)|all_epithelial(167;0.000139)|Lung NSC(69;0.000446)		Lung(183;0.0704)|LUSC - Lung squamous cell carcinoma(189;0.227)|Colorectal(144;0.248)		GACCCTGGTTCGAGTGGTGGG	0.537													7	110					0	0	1	0	0
CD101	9398	broad.mit.edu	37	1	117552761	117552761	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:117552761C>T	uc010oxb.1	+	2	391	c.333C>T	c.(331-333)CTC>CTT	p.L111L	CD101_uc009whd.2_Silent_p.L111L|CD101_uc010oxc.1_Silent_p.L111L|CD101_uc010oxd.1_Silent_p.L111L	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	111	Extracellular (Potential).|Ig-like C2-type 1.				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						TCTCAAAACTCCAGATGAAGG	0.478													8	27					0	0	1	0	0
CD101	9398	broad.mit.edu	37	1	117564584	117564584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:117564584G>A	uc010oxb.1	+	7	2465	c.2407G>A	c.(2407-2409)GAA>AAA	p.E803K	CD101_uc009whd.2_Missense_Mutation_p.E803K|CD101_uc010oxc.1_Missense_Mutation_p.E803K|CD101_uc010oxd.1_Missense_Mutation_p.E741K	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	803	Extracellular (Potential).				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						AGGACTAACAGAATTGAAACT	0.483													8	28					0	0	1	0	0
MAN1A2	10905	broad.mit.edu	37	1	117910832	117910832	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:117910832C>T	uc001ehd.1	+	1	748	c.27C>T	c.(25-27)CTC>CTT	p.L9L	MAN1A2_uc009whg.1_5'UTR	NM_006699	NP_006690	O60476	MA1A2_HUMAN	mannosidase, alpha, class 1A, member 2	9	Cytoplasmic (Potential).				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity				0	Lung SC(450;0.225)	all_cancers(81;7.9e-06)|all_epithelial(167;7.39e-07)|all_lung(203;2.84e-06)|Lung NSC(69;1.99e-05)		Lung(183;0.0688)|Kidney(133;0.114)|LUSC - Lung squamous cell carcinoma(189;0.223)|KIRC - Kidney renal clear cell carcinoma(1967;0.237)|Colorectal(144;0.243)		TGCTGCCCCTCTCTGGACGTA	0.463													7	117					0	0	1	0	0
FAM46C	54855	broad.mit.edu	37	1	118165957	118165957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:118165957C>T	uc001ehe.2	+	2	666	c.467C>T	c.(466-468)TCC>TTC	p.S156F		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	156											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		AGCCTGATCTCCCTCTCCAAC	0.502										Multiple Myeloma(3;1.13e-06)			5	75					0	0	1	0	0
FAM46C	54855	broad.mit.edu	37	1	118166091	118166092	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:118166091_118166092CC>TT	uc001ehe.2	+	2	800_801	c.601_602CC>TT	c.(601-603)CCC>TTC	p.P201F		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	201											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		TTCCAATAATCCCATCTCTGAG	0.48										Multiple Myeloma(3;1.13e-06)			8	118					0	0	1	0	0
GDAP2	54834	broad.mit.edu	37	1	118424453	118424453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:118424453G>A	uc001ehf.2	-	12	1593	c.1294C>T	c.(1294-1296)CGT>TGT	p.R432C	GDAP2_uc001ehg.2_Missense_Mutation_p.R432C	NM_017686	NP_060156	Q9NXN4	GDAP2_HUMAN	ganglioside induced differentiation associated	432	CRAL-TRIO.									ovary(2)	2		all_cancers(81;0.0156)|all_lung(203;5.81e-05)|Lung NSC(69;0.000446)|all_epithelial(167;0.00295)		Lung(183;0.0583)|LUSC - Lung squamous cell carcinoma(189;0.194)		ACCTTTGAACGAAATGTGGGA	0.328													4	8					0	0	1	0	0
WDR3	10885	broad.mit.edu	37	1	118477254	118477254	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:118477254C>T	uc010oxe.1	+	3	396	c.330C>T	c.(328-330)ATC>ATT	p.I110I	WDR3_uc001ehi.2_Intron|WDR3_uc001ehh.2_5'UTR	NM_006784	NP_006775	Q9UNX4	WDR3_HUMAN	WD repeat-containing protein 3	110	WD 3.					nuclear membrane|nucleolus				upper_aerodigestive_tract(1)	1	Esophageal squamous(2;0.162)	all_cancers(81;2.72e-05)|Acute lymphoblastic leukemia(138;1e-08)|all_epithelial(167;4.4e-07)|all_lung(203;1.7e-06)|Lung NSC(69;1.98e-05)|Prostate(1639;0.00955)|Breast(1374;0.244)		OV - Ovarian serous cystadenocarcinoma(397;1.39e-08)|Epithelial(280;1.82e-07)|all cancers(265;2.04e-05)|Lung(183;0.0525)|BRCA - Breast invasive adenocarcinoma(282;0.0695)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.185)		AAGCAGCTATCACTACCTTGA	0.483													5	67					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118558687	118558687	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:118558687G>A	uc001ehk.2	-	29	4256	c.4188C>T	c.(4186-4188)ACC>ACT	p.T1396T		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1396						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CTTCAGGTGTGGTTGTAAACC	0.483													7	10					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118628633	118628633	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:118628633C>T	uc001ehk.2	-	13	1742	c.1674G>A	c.(1672-1674)TGG>TGA	p.W558*		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	558						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GAAGAAATTCCCACAGTGGCA	0.423													8	31					0	0	1	0	0
HSD3B2	3284	broad.mit.edu	37	1	119964903	119964903	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:119964903C>T	uc001ehs.2	+	3	1552	c.779C>T	c.(778-780)CCT>CTT	p.P260L	HSD3B2_uc001eht.2_Missense_Mutation_p.P260L|HSD3B2_uc001ehu.2_Intron	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	260					androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	GATGACACGCCTCACCAAAGC	0.512													3	8					0	0	1	0	0
ADAM30	11085	broad.mit.edu	37	1	120437752	120437752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:120437752C>T	uc001eij.2	-	1	1362	c.1208G>A	c.(1207-1209)GGA>GAA	p.G403E		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	403	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		AATTTTGTTTCCACATCTCTT	0.388													141	566					0	0	1	0	0
ADAM30	11085	broad.mit.edu	37	1	120438486	120438486	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:120438486G>A	uc001eij.2	-	1	628	c.474C>T	c.(472-474)GTC>GTT	p.V158V		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	158					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		GGAGATAGACGACATGTTCAA	0.458													52	712					0	0	1	0	0
NOTCH2	4853	broad.mit.edu	37	1	120464978	120464978	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:120464978G>A	uc001eik.2	-	28	5350	c.5094C>T	c.(5092-5094)ATC>ATT	p.I1698I		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	1698	Helical; (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTTTTGCCATGATTACCCCCA	0.502			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				34	374					0	0	1	0	0
PPIAL4G	644591	broad.mit.edu	37	1	143767510	143767510	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:143767510G>A	uc001ejt.2	-	1	372	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_001123068	NP_001116540	A2BFH1	PAL4G_HUMAN	peptidylprolyl isomerase A (cyclophilin A)-like	113	PPIase cyclophilin-type.				protein folding	cytoplasm	peptidyl-prolyl cis-trans isomerase activity				0						CAGTGCAGATGAAAAACTGGG	0.478													7	169					0	0	1	0	0
NBPF9	400818	broad.mit.edu	37	1	144821989	144821989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:144821989C>T	uc009wig.1	+	15	1782	c.1706C>T	c.(1705-1707)TCA>TTA	p.S569L	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Missense_Mutation_p.S569L|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF9_uc009wii.1_Missense_Mutation_p.S298L|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.S229L	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	569	NBPF 3.					cytoplasm					0						TCGACTCCCTCAATTCCTCCT	0.502													6	99					0	0	1	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144873918	144873918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:144873918G>A	uc001elw.3	-	31	5330	c.5039C>T	c.(5038-5040)ACT>ATT	p.T1680I	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.T1636I|PDE4DIP_uc001elv.3_Missense_Mutation_p.T687I	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1680					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		ATTCTGGGGAGTTGGCAAGCT	0.522			T	PDGFRB	MPD								7	272					0	0	1	0	0
PDE4DIP	9659	broad.mit.edu	37	1	145075690	145075690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:145075690C>T	uc001emh.2	-	1	390	c.173G>A	c.(172-174)GGG>GAG	p.G58E	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elo.2_Missense_Mutation_p.G58E|PDE4DIP_uc001emk.2_Missense_Mutation_p.G58E	NM_022359	NP_071754	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TGCCCAGCTCCCGGCTGGCTC	0.721			T	PDGFRB	MPD								7	103					0	0	1	0	0
SEC22B	9554	broad.mit.edu	37	1	145115873	145115873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:145115873G>A	uc001eml.1	+	7	772	c.632G>A	c.(631-633)CGA>CAA	p.R211Q	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron	NM_004892	NP_004883	O75396	SC22B_HUMAN	SEC22 vesicle trafficking protein homolog B	211	Helical; Anchor for type IV membrane protein; (Potential).				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|melanosome	protein binding				0						GTGTATGTCCGATTCTGGTGG	0.413													6	84					0	0	1	0	0
HFE2	148738	broad.mit.edu	37	1	145414803	145414803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:145414803C>T	uc001eni.2	+	2	347	c.22C>T	c.(22-24)CCT>TCT	p.P8S	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Intron|HFE2_uc001enk.2_Intron|HFE2_uc001enl.2_Intron	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	8					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AGGCCAGTCCCCTAGTCCCAG	0.592													7	51					0	0	1	0	0
HFE2	148738	broad.mit.edu	37	1	145415583	145415583	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:145415583C>T	uc001eni.2	+	3	727	c.402C>T	c.(400-402)GCC>GCT	p.A134A	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Intron|HFE2_uc001enk.2_Silent_p.A21A|HFE2_uc001enl.2_Intron	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	134					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					ggggccccgcccTTCCAGGCG	0.577													6	20					0	0	1	0	0
PEX11B	8799	broad.mit.edu	37	1	145518256	145518256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:145518256G>A	uc001eny.1	+	3	376	c.358G>A	c.(358-360)GCC>ACC	p.A120T	NBPF10_uc001emp.3_Intron|GNRHR2_uc009wiv.1_5'Flank|GNRHR2_uc010oyt.1_5'Flank|GNRHR2_uc001enx.2_5'Flank|PEX11B_uc010oyu.1_Missense_Mutation_p.A106T	NM_003846	NP_003837	O96011	PX11B_HUMAN	peroxisomal biogenesis factor 11 beta	120					peroxisome fission|signal transduction	integral to peroxisomal membrane	protein binding				0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GGAGAAGTGGGCCCAGCGTTC	0.453													12	116					0	0	1	0	0
ANKRD35	148741	broad.mit.edu	37	1	145560117	145560117	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:145560117G>A	uc001eob.1	+	8	711	c.603G>A	c.(601-603)GTG>GTA	p.V201V	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Silent_p.V44V	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	201	ANK 5.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GTGCCGAGGTGGCTGAACTGC	0.567													8	76					0	0	1	0	0
ANKRD35	148741	broad.mit.edu	37	1	145561870	145561870	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:145561870G>A	uc001eob.1	+	10	1666	c.1558G>A	c.(1558-1560)GGA>AGA	p.G520R	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.G363R	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	520										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GGTCATGGAGGGAGCCCTGGG	0.622													23	182					0	0	1	0	0
ANKRD35	148741	broad.mit.edu	37	1	145561886	145561886	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:145561886C>T	uc001eob.1	+	10	1682	c.1574C>T	c.(1573-1575)CCC>CTC	p.P525L	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.P368L	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	525										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CTGGGGACTCCCCGTGCTGAG	0.617													25	158					0	0	1	0	0
ANKRD35	148741	broad.mit.edu	37	1	145562654	145562654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:145562654C>T	uc001eob.1	+	10	2450	c.2342C>T	c.(2341-2343)GCT>GTT	p.A781V	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.A624V	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	781	Potential.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CAAGTGGCCGCTCTGGAGCAA	0.627													4	31					0	0	1	0	0
LOC728989	728989	broad.mit.edu	37	1	146495670	146495670	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:146495670T>C	uc001epd.2	-	3	336	c.262A>G	c.(262-264)AGA>GGA	p.R88G		NR_024442				SubName: Full=cDNA FLJ59595, highly similar to Homo sapiens phosphodiesterase 4D interacting protein, transcript variant 1, mRNA;												0						ATCTGCTGTCTTAGGGCACTG	0.547													3	33					0	0	1	0	0
FMO5	2330	broad.mit.edu	37	1	146672876	146672876	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:146672876T>C	uc001epi.2	-	7	1430	c.1041A>G	c.(1039-1041)AAA>AAG	p.K347K	FMO5_uc001eph.3_Silent_p.K347K|FMO5_uc001epj.2_Intron	NM_001461	NP_001452	P49326	FMO5_HUMAN	flavin containing monooxygenase 5 isoform 1	347						integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			ovary(3)	3	all_hematologic(923;0.0487)					ATATCTTGTTTTTGACCACTT	0.453													8	41					0	0	1	0	0
ACP6	51205	broad.mit.edu	37	1	147119331	147119331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:147119331G>A	uc001epr.2	-	10	1645	c.1181C>T	c.(1180-1182)CCG>CTG	p.P394L		NM_016361	NP_057445	Q9NPH0	PPA6_HUMAN	acid phosphatase 6, lysophosphatidic precursor	394					lipid metabolic process	extracellular region|mitochondrion	acid phosphatase activity|protein binding			ovary(4)	4	all_hematologic(923;0.0276)					CATGTCCAGCGGGCAGAGCCC	0.502													7	56					0	0	1	0	0
ACP6	51205	broad.mit.edu	37	1	147131548	147131548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:147131548G>A	uc001epr.2	-	3	906	c.442C>T	c.(442-444)CCC>TCC	p.P148S	ACP6_uc009wjj.1_Missense_Mutation_p.P105S	NM_016361	NP_057445	Q9NPH0	PPA6_HUMAN	acid phosphatase 6, lysophosphatidic precursor	148					lipid metabolic process	extracellular region|mitochondrion	acid phosphatase activity|protein binding			ovary(4)	4	all_hematologic(923;0.0276)					GAAAGAAAGGGAATGTCTTCC	0.483													4	29					0	0	1	0	0
GJA5	2702	broad.mit.edu	37	1	147230637	147230637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:147230637C>T	uc001eps.1	-	2	851	c.710G>A	c.(709-711)CGA>CAA	p.R237Q	GJA5_uc001ept.1_Missense_Mutation_p.R237Q	NM_181703	NP_859054	P36382	CXA5_HUMAN	connexin 40	237	Cytoplasmic (Potential).				angiogenesis|cell-cell junction assembly|muscle contraction	integral to membrane				ovary(1)	1	all_hematologic(923;0.0276)		LUSC - Lung squamous cell carcinoma(543;0.202)			TTTGACAAATCGCTGTCTGAT	0.547													5	42					0	0	1	0	0
GJA8	2703	broad.mit.edu	37	1	147380190	147380190	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:147380190C>T	uc001epu.1	+	2	171	c.108C>T	c.(106-108)ATC>ATT	p.I36I		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	36	Helical; (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					GGATCCTCATCCTTGGCACGG	0.587													4	64					0	0	1	0	0
GJA8	2703	broad.mit.edu	37	1	147380328	147380328	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:147380328C>T	uc001epu.1	+	2	309	c.246C>T	c.(244-246)ATC>ATT	p.I82I		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	82	Helical; (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					TGCTGCAGATCATCTTCGTCT	0.627													6	55					0	0	1	0	0
HIST2H2BF	440689	broad.mit.edu	37	1	149399195	149399195	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:149399195G>A	uc010pbi.1	-	1		c.35C>T						Q5QNW6	H2B2F_HUMAN	Homo sapiens histone cluster 2, H3, pseudogene 2, mRNA (cDNA clone IMAGE:5190019).						nucleosome assembly	nucleosome|nucleus	DNA binding				0	Breast(34;0.0124)|all_hematologic(923;0.127)					CGCGAAAAAAGAGAACAGAGA	0.488													4	29					0	0	1	0	0
SV2A	9900	broad.mit.edu	37	1	149879342	149879342	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:149879342G>A	uc001etg.2	-	10	2079	c.1588C>T	c.(1588-1590)CTG>TTG	p.L530L	SV2A_uc009wlk.2_5'Flank|SV2A_uc001eth.2_Silent_p.L530L	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	530	Extracellular (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	TCTTCAAACAGGGAATCCTCA	0.498													5	45					0	0	1	0	0
MTMR11	10903	broad.mit.edu	37	1	149901600	149901600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:149901600G>A	uc001etl.3	-	16	2107	c.1856C>T	c.(1855-1857)CCT>CTT	p.P619L	SF3B4_uc001etj.1_5'Flank|SF3B4_uc001etk.1_5'Flank|SF3B4_uc009wll.1_5'Flank|MTMR11_uc001etm.1_Missense_Mutation_p.P547L	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	619	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			CAGCCCTGGAGGTAAAGGGCA	0.592													7	92					0	0	1	0	0
MTMR11	10903	broad.mit.edu	37	1	149901678	149901678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:149901678G>A	uc001etl.3	-	16	2029	c.1778C>T	c.(1777-1779)CCT>CTT	p.P593L	SF3B4_uc001etj.1_5'Flank|SF3B4_uc001etk.1_5'Flank|SF3B4_uc009wll.1_5'Flank|MTMR11_uc001etm.1_Missense_Mutation_p.P521L	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	593	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			AGCAGGTCGAGGGAGCCAACG	0.597													5	58					0	0	1	0	0
MTMR11	10903	broad.mit.edu	37	1	149902314	149902314	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:149902314G>A	uc001etl.3	-	15	1841	c.1590C>T	c.(1588-1590)TTC>TTT	p.F530F	SF3B4_uc001etj.1_5'Flank|SF3B4_uc001etk.1_5'Flank|SF3B4_uc009wll.1_5'Flank|MTMR11_uc001etm.1_Silent_p.F458F|MTMR11_uc010pbm.1_3'UTR	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	530	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			CAGGATTCTGGAATTGTAGTA	0.498													22	128					0	0	1	0	0
C1orf51	148523	broad.mit.edu	37	1	150259041	150259041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:150259041C>T	uc001euh.2	+	6	969	c.833C>T	c.(832-834)TCC>TTC	p.S278F	C1orf51_uc001eui.2_Missense_Mutation_p.S190F|C1orf51_uc001euj.2_Missense_Mutation_p.S278F	NM_144697	NP_653298	Q8N365	CA051_HUMAN	hypothetical protein LOC148523	278											0	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGTACTATCTCCTTTAGCCAT	0.557													20	84					0	0	1	0	0
C1orf51	148523	broad.mit.edu	37	1	150259208	150259208	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:150259208C>T	uc001euh.2	+	6	1136	c.1000C>T	c.(1000-1002)CGT>TGT	p.R334C	C1orf51_uc001eui.2_Missense_Mutation_p.R246C|C1orf51_uc001euj.2_Missense_Mutation_p.R334C	NM_144697	NP_653298	Q8N365	CA051_HUMAN	hypothetical protein LOC148523	334											0	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGAGGGTCCTCGTTGCTACAG	0.552													14	95					0	0	1	0	0
RPRD2	23248	broad.mit.edu	37	1	150429861	150429861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:150429861C>T	uc009wlr.2	+	8	1169	c.968C>T	c.(967-969)TCC>TTC	p.S323F	RPRD2_uc010pcc.1_Missense_Mutation_p.S297F|RPRD2_uc001eup.3_Missense_Mutation_p.S297F	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	323							protein binding			ovary(1)	1						CCAGTTCCTTCCCCAAGCATG	0.463													8	113					0	0	1	0	0
RPRD2	23248	broad.mit.edu	37	1	150445119	150445119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:150445119C>T	uc009wlr.2	+	11	3896	c.3695C>T	c.(3694-3696)CCC>CTC	p.P1232L	RPRD2_uc010pcc.1_3'UTR|RPRD2_uc001eup.3_Missense_Mutation_p.P1206L	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	1232	Pro-rich.						protein binding			ovary(1)	1						CGAGATGCACCCACTCATCTA	0.577													6	103					0	0	1	0	0
TARS2	80222	broad.mit.edu	37	1	150463975	150463976	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:150463975_150463976CC>TT	uc001euq.2	+	5	625_626	c.618_619CC>TT	c.(616-621)CGCCAG>CGTTAG	p.Q207*	TARS2_uc010pcd.1_RNA|TARS2_uc001eur.2_Nonsense_Mutation_p.Q207*|TARS2_uc009wlt.2_Intron|TARS2_uc009wls.2_Nonsense_Mutation_p.Q207*	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	207					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	ATCAGCTTCGCCAGTTGTTCAA	0.535													15	89					0	0	1	0	0
ARNT	405	broad.mit.edu	37	1	150788865	150788865	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:150788865G>A	uc001evr.1	-	19	1963	c.1820C>T	c.(1819-1821)CCT>CTT	p.P607L	ARNT_uc010pck.1_Missense_Mutation_p.P96L|ARNT_uc001evs.1_Missense_Mutation_p.P592L|ARNT_uc009wmb.1_Missense_Mutation_p.P593L|ARNT_uc009wmc.1_Missense_Mutation_p.P605L|ARNT_uc009wmd.1_Missense_Mutation_p.P592L	NM_001668	NP_001659	P27540	ARNT_HUMAN	aryl hydrocarbon receptor nuclear translocator	607					positive regulation of hormone biosynthetic process|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|response to hypoxia		aryl hydrocarbon receptor binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity	p.P607S(1)		skin(4)|lung(3)|central_nervous_system(1)|kidney(1)	9	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.02)|BRCA - Breast invasive adenocarcinoma(12;0.00606)|LUSC - Lung squamous cell carcinoma(543;0.211)			GGTTACAGGAGGGGCTAGGCC	0.478			T	ETV6	AML								8	36					0	0	1	0	0
MLLT11	10962	broad.mit.edu	37	1	151039782	151039782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:151039782G>A	uc001ewq.2	+	2	967	c.82G>A	c.(82-84)GAA>AAA	p.E28K		NM_006818	NP_006809	Q13015	AF1Q_HUMAN	MLLT11 protein	28					positive regulation of apoptosis|positive regulation of mitochondrial depolarization|positive regulation of release of cytochrome c from mitochondria|positive regulation of transcription, DNA-dependent						0	Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GTCGGAGCTGGAAGGCCTGGG	0.522													6	76					0	0	1	0	0
PIP5K1A	8394	broad.mit.edu	37	1	151205165	151205165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:151205165C>T	uc001exj.2	+	7	1077	c.625C>T	c.(625-627)CCA>TCA	p.P209S	PIP5K1A_uc001exi.2_Missense_Mutation_p.P196S|PIP5K1A_uc010pcu.1_Missense_Mutation_p.P197S|PIP5K1A_uc001exk.2_Missense_Mutation_p.P196S|PIP5K1A_uc010pcv.1_5'Flank	NM_001135638	NP_001129110	Q99755	PI51A_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	209	PIPK.				phospholipid biosynthetic process|signal transduction	endomembrane system|Golgi stack|lamellipodium|nuclear speck	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|kinase binding	p.P196A(1)		ovary(1)|central_nervous_system(1)|skin(1)	3	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.181)			GAAGCTGCTTCCAGGATACTA	0.498													4	63					0	0	1	0	0
PIP5K1A	8394	broad.mit.edu	37	1	151206841	151206841	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:151206841T>G	uc001exj.2	+	8	1260	c.808T>G	c.(808-810)TCC>GCC	p.S270A	PIP5K1A_uc001exi.2_Missense_Mutation_p.S257A|PIP5K1A_uc010pcu.1_Missense_Mutation_p.S258A|PIP5K1A_uc001exk.2_Missense_Mutation_p.S257A|PIP5K1A_uc010pcv.1_Missense_Mutation_p.S27A	NM_001135638	NP_001129110	Q99755	PI51A_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	270	PIPK.				phospholipid biosynthetic process|signal transduction	endomembrane system|Golgi stack|lamellipodium|nuclear speck	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|kinase binding			ovary(1)|central_nervous_system(1)|skin(1)	3	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.181)			ACGGCGGGCTTCCCAGAAAGA	0.428													5	42					0	0	1	0	0
CELF3	11189	broad.mit.edu	37	1	151681498	151681498	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:151681498G>A	uc001eys.1	-	5	1256	c.462C>T	c.(460-462)ACC>ACT	p.T154T	CELF3_uc010pdh.1_5'Flank|CELF3_uc001eyr.2_Silent_p.T153T|CELF3_uc009wmy.2_Silent_p.T154T|CELF3_uc009wmx.1_Silent_p.T154T|CELF3_uc001eyt.2_Silent_p.T77T|CELF3_uc010pdi.1_Silent_p.T154T|C1orf230_uc001eyu.2_5'Flank	NM_007185	NP_009116	Q5SZQ8	CELF3_HUMAN	trinucleotide repeat containing 4	154	RRM 2.				nuclear mRNA splicing, via spliceosome|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	mRNA binding|nucleotide binding			ovary(1)|central_nervous_system(1)	2						TGCTGTGAAGGGTGTTGATGG	0.677													6	62					0	0	1	0	0
CELF3	11189	broad.mit.edu	37	1	151688415	151688415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:151688415C>T	uc001eys.1	-	1	876	c.82G>A	c.(82-84)GAA>AAA	p.E28K	CELF3_uc001eyr.2_Missense_Mutation_p.E28K|CELF3_uc009wmy.2_Missense_Mutation_p.E28K|CELF3_uc009wmx.1_Missense_Mutation_p.E28K|CELF3_uc001eyt.2_5'UTR|CELF3_uc010pdi.1_Missense_Mutation_p.E28K|C1orf230_uc001eyu.2_Intron	NM_007185	NP_009116	Q5SZQ8	CELF3_HUMAN	trinucleotide repeat containing 4	28	RRM 1.				nuclear mRNA splicing, via spliceosome|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	mRNA binding|nucleotide binding			ovary(1)|central_nervous_system(1)	2						CCAAACTGTTCGAAGATGGGC	0.592													14	49					0	0	1	0	0
TDRKH	11022	broad.mit.edu	37	1	151748984	151748984	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:151748984G>A	uc009wnb.1	-	7	1157	c.975C>T	c.(973-975)ATC>ATT	p.I325I	TDRKH_uc001eyy.2_Silent_p.I101I|TDRKH_uc001ezb.3_Silent_p.I321I|TDRKH_uc001ezc.3_Silent_p.I280I|TDRKH_uc001eza.3_Silent_p.I325I|TDRKH_uc001ezd.3_Silent_p.I325I|TDRKH_uc010pdn.1_Silent_p.I101I	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	325							RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GGGAGCCAACGATCTGGATCC	0.498													18	88					0	0	1	0	0
LINGO4	339398	broad.mit.edu	37	1	151773448	151773448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:151773448G>A	uc001ezf.1	-	2	1923	c.1733C>T	c.(1732-1734)TCT>TTT	p.S578F		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	578	Cytoplasmic (Potential).					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			TTTATCCCCAGAGGGCCGAGG	0.552													7	79					0	0	1	0	0
RORC	6097	broad.mit.edu	37	1	151787712	151787712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:151787712G>A	uc001ezh.2	-	5	596	c.488C>T	c.(487-489)TCG>TTG	p.S163L	RORC_uc001ezg.2_Missense_Mutation_p.S142L|RORC_uc010pdo.1_Missense_Mutation_p.S217L|RORC_uc010pdp.1_Missense_Mutation_p.S163L	NM_005060	NP_005051	P51449	RORG_HUMAN	RAR-related orphan receptor C isoform a	163	Hinge (Potential).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CAGGTCAGGCGAGGAGCCCAG	0.627													4	45					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	151993827	151993827	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:151993827C>T	uc001ezm.1	+	10		c.2662C>T								Homo sapiens cDNA FLJ43896 fis, clone TESTI4009752.																		GGGCTGCAGGCTGACAGAGAA	0.577													3	24					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059395	152059395	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152059395C>T	uc001ezo.1	-	3	828	c.763G>A	c.(763-765)GAA>AAA	p.E255K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	255							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			AAGTTTCCTTCCTGTTCTCCA	0.433													6	84					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059694	152059694	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152059694T>G	uc001ezo.1	-	3	529	c.464A>C	c.(463-465)AAC>ACC	p.N155T		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	155							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			GTCCACTCTGTTATTTCCAAC	0.453													5	36					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152129151	152129151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152129151C>T	uc001ezs.1	-	3	489	c.424G>A	c.(424-426)GGA>AGA	p.G142R		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	142	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TGGGAATCTCCGTCTTGTCTC	0.522													8	70					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152192079	152192079	+	Missense_Mutation	SNP	C	T	T	rs141565920		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152192079C>T	uc001ezt.1	-	3	2102	c.2026G>A	c.(2026-2028)GGC>AGC	p.G676S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	676	6.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCATGTTGGCCGTAGCTGGAA	0.587													12	115					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152275785	152275785	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152275785C>T	uc001ezu.1	-	3	11613	c.11577G>A	c.(11575-11577)CAG>CAA	p.Q3859Q		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3859	Filaggrin 23.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CACTGGATCCCTGGCGCCTGC	0.582									Ichthyosis				25	141					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152276039	152276039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152276039C>T	uc001ezu.1	-	3	11359	c.11323G>A	c.(11323-11325)GAG>AAG	p.E3775K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3775	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACCGATTGCTCGTGGTAGGAT	0.597									Ichthyosis				22	393					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152277724	152277724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152277724G>A	uc001ezu.1	-	3	9674	c.9638C>T	c.(9637-9639)TCC>TTC	p.S3213F		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3213	Filaggrin 19.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCTCACACTGGATCCCTGGCG	0.557									Ichthyosis				14	135					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152278990	152278990	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152278990C>T	uc001ezu.1	-	3	8408	c.8372G>A	c.(8371-8373)GGG>GAG	p.G2791E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2791	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTGCTTGACCCCGGGTGTCC	0.592									Ichthyosis				34	614					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152279786	152279786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152279786C>T	uc001ezu.1	-	3	7612	c.7576G>A	c.(7576-7578)GGC>AGC	p.G2526S		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2526	Ser-rich.|Filaggrin 15.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGCCTGGAGCCGTCTCCTGAT	0.602									Ichthyosis				42	256					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152281415	152281415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152281415C>T	uc001ezu.1	-	3	5983	c.5947G>A	c.(5947-5949)GAG>AAG	p.E1983K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1983	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGGAAGACTCTGTGTGACGA	0.572									Ichthyosis				26	488					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152281938	152281938	+	Silent	SNP	C	T	T	rs142906121		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152281938C>T	uc001ezu.1	-	3	5460	c.5424G>A	c.(5422-5424)GAG>GAA	p.E1808E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1808	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCCTGACCCTCTTGGGACG	0.602									Ichthyosis				34	394					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152283027	152283027	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152283027C>T	uc001ezu.1	-	3	4371	c.4335G>A	c.(4333-4335)GTG>GTA	p.V1445V	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1445	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CATGAGAGCTCACCTGGTAGA	0.587									Ichthyosis				16	139					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152285991	152285991	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152285991C>T	uc001ezu.1	-	3	1407	c.1371G>A	c.(1369-1371)CGG>CGA	p.R457R	uc001ezv.2_RNA	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	457	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTTCCCCTGACCGGCCACGTG	0.587									Ichthyosis				23	155					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152286383	152286383	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152286383C>T	uc001ezu.1	-	3	1015	c.979G>A	c.(979-981)GAG>AAG	p.E327K	uc001ezv.2_RNA	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	327	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTTGACTGCTCCCACGCAGAT	0.567									Ichthyosis				23	147					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152286926	152286926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152286926C>T	uc001ezu.1	-	3	472	c.436G>A	c.(436-438)GAA>AAA	p.E146K	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	146					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCCCTGTTTCTCTTGGGCTC	0.348									Ichthyosis				14	83					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152323855	152323855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152323855G>A	uc001ezw.3	-	3	6480	c.6407C>T	c.(6406-6408)TCA>TTA	p.S2136L	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2136	Filaggrin 10.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGCAGATCCTGACTCTCCATG	0.522													21	105					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152326955	152326955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152326955C>T	uc001ezw.3	-	3	3380	c.3307G>A	c.(3307-3309)GGA>AGA	p.G1103R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1103	Ser-rich.|Filaggrin 4.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGTGTTGTCCAAATCCAGAT	0.512													6	93					0	0	1	0	0
LCE5A	254910	broad.mit.edu	37	1	152484171	152484171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152484171C>T	uc001ezy.2	+	2	337	c.161C>T	c.(160-162)TCC>TTC	p.S54F	CRCT1_uc001ezz.2_5'Flank	NM_178438	NP_848525	Q5TCM9	LCE5A_HUMAN	late cornified envelope 5A	54	Cys-rich.				keratinization					ovary(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGCTGTGGTTCCAGCTCTGGG	0.522													5	58					0	0	1	0	0
LCE3A	353142	broad.mit.edu	37	1	152595469	152595469	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152595469C>T	uc010pdt.1	-	1	111	c.111G>A	c.(109-111)GGG>GGA	p.G37G		NM_178431	NP_848518	Q5TA76	LCE3A_HUMAN	late cornified envelope 3A	37					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCCACAGCCCCCAGAGCTTG	0.652													7	57					0	0	1	0	0
KPRP	448834	broad.mit.edu	37	1	152733075	152733075	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152733075G>A	uc001fal.1	+	2	1069	c.1011G>A	c.(1009-1011)CAG>CAA	p.Q337Q		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	337	Pro-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCCCAGGCAGGTTCCCCCAC	0.632													6	49					0	0	1	0	0
LCE1E	353135	broad.mit.edu	37	1	152760053	152760053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152760053C>T	uc001fan.2	+	2	331	c.278C>T	c.(277-279)TCT>TTT	p.S93F		NM_178353	NP_848130	Q5T753	LCE1E_HUMAN	late cornified envelope 1E	93	Cys-rich.				keratinization						0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCCAGAGCTCTGACTGCTGC	0.667													9	97					0	0	1	0	0
LCE1E	353135	broad.mit.edu	37	1	152760117	152760117	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152760117T>C	uc001fan.2	+	2	395	c.342T>C	c.(340-342)TCT>TCC	p.S114S		NM_178353	NP_848130	Q5T753	LCE1E_HUMAN	late cornified envelope 1E	114	Cys-rich.				keratinization						0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCAGCACTCTGGAGGCTGCT	0.597													14	148					0	0	1	0	0
LCE1A	353131	broad.mit.edu	37	1	152800278	152800278	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:152800278C>T	uc010pdw.1	+	1	330	c.330C>T	c.(328-330)TGC>TGT	p.C110C		NM_178348	NP_848125	Q5T7P2	LCE1A_HUMAN	late cornified envelope 1A	110	Cys-rich.				keratinization					ovary(1)|skin(1)	2	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GAGGCTGCTGCTGAAGCGGAC	0.617													3	16					0	0	1	0	0
LELP1	149018	broad.mit.edu	37	1	153177402	153177402	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:153177402C>T	uc001fbl.2	+	2	329	c.219C>T	c.(217-219)CCC>CCT	p.P73P		NM_001010857	NP_001010857	Q5T871	LELP1_HUMAN	late cornified envelope-like proline-rich 1	73	Cys/Pro-rich.									ovary(1)	1	all_lung(78;3.51e-31)|Lung NSC(65;1.34e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTCCCCAGCCCTGCACCAAGC	0.617													3	32					0	0	1	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153270491	153270491	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:153270491G>A	uc001fbn.1	-	7	1020	c.967C>T	c.(967-969)CTG>TTG	p.L323L		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	323					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCAGGGGACAGGATGTTGACC	0.597													45	176					0	0	1	0	0
S100A8	6279	broad.mit.edu	37	1	153362985	153362985	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:153362985C>T	uc001fbs.2	-	2	82	c.27G>A	c.(25-27)TTG>TTA	p.L9L		NM_002964	NP_002955	P05109	S10A8_HUMAN	S100 calcium-binding protein A8	9					chemotaxis	cytoplasm|cytoskeleton|plasma membrane	calcium ion binding|protein binding				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGATAGAGTTCAAGGCTTTCT	0.507													17	193					0	0	1	0	0
S100A7	6278	broad.mit.edu	37	1	153430437	153430437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:153430437C>T	uc001fbv.1	-	3	222	c.151G>A	c.(151-153)GGC>AGC	p.G51S		NM_002963	NP_002954	P31151	S10A7_HUMAN	S100 calcium binding protein A7	51	EF-hand 2.				angiogenesis|defense response to Gram-negative bacterium|innate immune response|keratinocyte differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of granulocyte chemotaxis|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|response to lipopolysaccharide|response to reactive oxygen species|sequestering of metal ion	cytosol|endoplasmic reticulum|extracellular region|focal adhesion|nucleus	calcium ion binding|RAGE receptor binding|zinc ion binding			skin(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			TAATTTGTGCCCTTTTTGTCC	0.413													4	50					0	0	1	0	0
NPR1	4881	broad.mit.edu	37	1	153665653	153665653	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:153665653C>T	uc001fcs.3	+	21	3524	c.3103C>T	c.(3103-3105)CGA>TGA	p.R1035*	NPR1_uc010pdz.1_Nonsense_Mutation_p.R781*|NPR1_uc010pea.1_Nonsense_Mutation_p.R513*	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	1035	Cytoplasmic (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	GCTGGAGCTTCGAGGGGATGT	0.562													14	66					0	0	1	0	0
DENND4B	9909	broad.mit.edu	37	1	153912185	153912185	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:153912185G>A	uc001fdd.1	-	12	2100	c.1699C>T	c.(1699-1701)CAA>TAA	p.Q567*		NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	567	dDENN.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			AAGGCTCCTTGGACTTCGCGC	0.632													11	102					0	0	1	0	0
SLC39A1	27173	broad.mit.edu	37	1	153932653	153932653	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:153932653G>T	uc001fdh.2	-	4	1065	c.896C>A	c.(895-897)TCT>TAT	p.S299Y	CRTC2_uc010ped.1_5'Flank|SLC39A1_uc001fdi.2_Missense_Mutation_p.S299Y|SLC39A1_uc001fdj.2_Missense_Mutation_p.S299Y|SLC39A1_uc001fdk.2_Missense_Mutation_p.S299Y|SLC39A1_uc010pee.1_Missense_Mutation_p.S197Y|SLC39A1_uc001fdl.2_Missense_Mutation_p.S299Y	NM_014437	NP_055252	Q9NY26	S39A1_HUMAN	solute carrier family 39 (zinc transporter),	299	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|membrane fraction|plasma membrane	zinc ion transmembrane transporter activity				0	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)	Colorectal(1306;0.019)		CCTTTGCTCAGAACTGGCCAG	0.567													23	84					3.5997e-14	3.65422e-14	1	1	0
UBAP2L	9898	broad.mit.edu	37	1	154241257	154241257	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:154241257C>T	uc001fep.3	+	26	3162	c.2995C>T	c.(2995-2997)CAT>TAT	p.H999Y	UBAP2L_uc010pel.1_Missense_Mutation_p.H1008Y|UBAP2L_uc001feq.2_Missense_Mutation_p.H195Y|UBAP2L_uc001fer.2_Missense_Mutation_p.H195Y	NM_014847	NP_055662	Q14157	UBP2L_HUMAN	ubiquitin associated protein 2-like isoform a	999					binding of sperm to zona pellucida		protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(78;1.09e-30)|Lung NSC(65;1.66e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			ACAAGGTTTTCATTCCGGTAC	0.537													12	130					0	0	1	0	0
ATP8B2	57198	broad.mit.edu	37	1	154317450	154317450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:154317450C>T	uc001fex.2	+	22	2389	c.2389C>T	c.(2389-2391)CAC>TAC	p.H797Y		NM_020452	NP_065185	P98198	AT8B2_HUMAN	ATPase, class I, type 8B, member 2 isoform a	783	Cytoplasmic (Potential).				ATP biosynthetic process	plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(1)|skin(1)	2	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			GCTCCAGGCCCACGCACTGGA	0.582											OREG0013835	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	94					0	0	1	0	0
TDRD10	126668	broad.mit.edu	37	1	154516517	154516517	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:154516517G>A	uc009wow.2	+	9	1420	c.582G>A	c.(580-582)GGG>GGA	p.G194G	TDRD10_uc001ffd.2_Silent_p.G194G|TDRD10_uc001ffe.2_Silent_p.G115G	NM_001098475	NP_001091945	Q5VZ19	TDR10_HUMAN	tudor domain containing 10 isoform a	194							nucleotide binding|RNA binding			ovary(1)	1	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			GCGTCCGTGGGGAGGCGGGGC	0.622													17	122					0	0	1	0	0
KCNN3	3782	broad.mit.edu	37	1	154680484	154680484	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:154680484G>A	uc001ffp.2	-	8	2478	c.2164C>T	c.(2164-2166)CCG>TCG	p.P722S	KCNN3_uc001ffo.2_Missense_Mutation_p.P417S	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	727						integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			TACGGGGTCGGGAAGGAGGTG	0.562													19	158					0	0	1	0	0
LENEP	55891	broad.mit.edu	37	1	154966142	154966142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:154966142C>T	uc001fgi.2	+	1	81	c.59C>T	c.(58-60)CCT>CTT	p.P20L		NM_018655	NP_061125	Q9Y5L5	LENEP_HUMAN	lens epithelial protein	20					multicellular organismal development		DNA binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GGAGGGGCCCCTCGAGACACT	0.637													4	73					0	0	1	0	0
DCST2	127579	broad.mit.edu	37	1	154995717	154995717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:154995717C>T	uc001fgm.2	-	14	2061	c.1981G>A	c.(1981-1983)GAG>AAG	p.E661K	DCST2_uc009wpb.2_RNA	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2	661	Cytoplasmic (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TGAGGGCCCTCCTCATCGCTG	0.592													5	35					0	0	1	0	0
DCST1	149095	broad.mit.edu	37	1	155014008	155014008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:155014008G>A	uc001fgn.1	+	7	763	c.667G>A	c.(667-669)GAG>AAG	p.E223K	DCST1_uc010per.1_Missense_Mutation_p.E248K|DCST1_uc010pes.1_Missense_Mutation_p.E198K	NM_152494	NP_689707	Q5T197	DCST1_HUMAN	DC-STAMP domain containing 1 isoform 1	223	Extracellular (Potential).					integral to membrane	zinc ion binding			ovary(1)|skin(1)	2	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			CCAGGGCAGGGAGGCCCGCCA	0.607													8	87					0	0	1	0	0
ADAM15	8751	broad.mit.edu	37	1	155032808	155032808	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:155032808C>T	uc001fgr.1	+	18	2297	c.2196C>T	c.(2194-2196)ACC>ACT	p.T732T	ADAM15_uc001fgq.1_Silent_p.T417T|ADAM15_uc010peu.1_Silent_p.T749T|ADAM15_uc001fgt.1_Silent_p.T732T|ADAM15_uc010pev.1_Silent_p.T742T|ADAM15_uc001fgs.1_Silent_p.T732T|ADAM15_uc001fgu.1_Silent_p.T732T|ADAM15_uc001fgw.1_Silent_p.T732T|ADAM15_uc001fgv.1_Silent_p.T732T|ADAM15_uc001fgx.1_Silent_p.T732T|ADAM15_uc001fgz.1_RNA|ADAM15_uc001fgy.1_RNA|ADAM15_uc001fha.1_RNA|ADAM15_uc001fhb.1_Silent_p.T23T	NM_207197	NP_997080	Q13444	ADA15_HUMAN	a disintegrin and metalloproteinase domain 15	732	Cytoplasmic (Potential).				angiogenesis|cell-matrix adhesion|collagen catabolic process|proteolysis	acrosomal vesicle|adherens junction|endomembrane system|flagellum|integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			central_nervous_system(3)|skin(2)|ovary(1)	6	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			AGGGACCCACCTGCCAGTACA	0.607													11	36					0	0	1	0	0
TRIM46	80128	broad.mit.edu	37	1	155156339	155156339	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:155156339C>T	uc001fhs.1	+	10	2036	c.1953C>T	c.(1951-1953)TTC>TTT	p.F651F	RAG1AP1_uc010pey.1_Intron|TRIM46_uc001fht.1_RNA|TRIM46_uc010pfa.1_Silent_p.F525F|TRIM46_uc001fhu.1_Silent_p.F628F|TRIM46_uc001fhw.1_RNA	NM_025058	NP_079334	Q7Z4K8	TRI46_HUMAN	tripartite motif-containing 46	651	B30.2/SPRY.					intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;6.62e-10)|all cancers(21;2.68e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CGCCACCCTTCGCTTTCCTAA	0.647													6	89					0	0	1	0	0
FAM189B	10712	broad.mit.edu	37	1	155220458	155220458	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:155220458G>A	uc001fjm.2	-	9	1725	c.1119C>T	c.(1117-1119)GGC>GGT	p.G373G	RAG1AP1_uc010pey.1_Intron|FAM189B_uc009wql.2_Silent_p.G175G|FAM189B_uc001fjn.2_Silent_p.G277G|FAM189B_uc001fjo.2_Silent_p.G355G|FAM189B_uc001fjp.2_Intron	NM_006589	NP_006580	P81408	F189B_HUMAN	hypothetical protein LOC10712 isoform a	373						integral to membrane	WW domain binding			ovary(1)|breast(1)	2						TGAGGCAGTAGCCGGCACGGC	0.701													4	43					0	0	1	0	0
PKLR	5313	broad.mit.edu	37	1	155264116	155264116	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:155264116G>A	uc001fkb.3	-	7	1065	c.1026C>T	c.(1024-1026)ATC>ATT	p.I342I	RAG1AP1_uc010pey.1_Intron|PKLR_uc001fka.3_Silent_p.I311I	NM_000298	NP_000289	P30613	KPYR_HUMAN	pyruvate kinase, liver and RBC isoform 1	342			I -> F (in PKRD).		endocrine pancreas development|energy reserve metabolic process|glycolysis|positive regulation of cellular metabolic process	cytosol	ATP binding|magnesium ion binding|potassium ion binding|pyruvate kinase activity			skin(4)|ovary(1)	5	all_lung(78;6.99e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;3.18e-10)|all cancers(21;7.9e-10)|BRCA - Breast invasive adenocarcinoma(34;0.00116)|LUSC - Lung squamous cell carcinoma(543;0.127)		Pyruvic acid(DB00119)	CTGGGATCTCGATGCCTAGGT	0.572													4	26					0	0	1	0	0
PKLR	5313	broad.mit.edu	37	1	155265495	155265495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:155265495C>T	uc001fkb.3	-	3	375	c.336G>A	c.(334-336)ATG>ATA	p.M112I	RAG1AP1_uc010pey.1_Intron|PKLR_uc001fka.3_Missense_Mutation_p.M81I|PKLR_uc010pga.1_Missense_Mutation_p.M48I	NM_000298	NP_000289	P30613	KPYR_HUMAN	pyruvate kinase, liver and RBC isoform 1	112					endocrine pancreas development|energy reserve metabolic process|glycolysis|positive regulation of cellular metabolic process	cytosol	ATP binding|magnesium ion binding|potassium ion binding|pyruvate kinase activity			skin(4)|ovary(1)	5	all_lung(78;6.99e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;3.18e-10)|all cancers(21;7.9e-10)|BRCA - Breast invasive adenocarcinoma(34;0.00116)|LUSC - Lung squamous cell carcinoma(543;0.127)		Pyruvic acid(DB00119)	GCGCAATGTTCATCCCGGCCT	0.632													11	55					0	0	1	0	0
ASH1L	55870	broad.mit.edu	37	1	155348104	155348104	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:155348104G>A	uc009wqq.2	-	10	6795	c.6315C>T	c.(6313-6315)ACC>ACT	p.T2105T	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Silent_p.T2100T	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2105	AWS.				cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			AGCCCTTCCTGGTGTCATCAT	0.418													19	199					0	0	1	0	0
GON4L	54856	broad.mit.edu	37	1	155742921	155742921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:155742921G>A	uc001flz.2	-	18	2528	c.2431C>T	c.(2431-2433)CCA>TCA	p.P811S	GON4L_uc001fly.1_Missense_Mutation_p.P811S|GON4L_uc009wrh.1_Missense_Mutation_p.P811S|GON4L_uc001fma.1_Missense_Mutation_p.P811S|GON4L_uc001fmb.3_Missense_Mutation_p.P7S|GON4L_uc001fmc.2_Missense_Mutation_p.P811S|GON4L_uc001fmd.3_Missense_Mutation_p.P811S|GON4L_uc009wri.2_Missense_Mutation_p.P397S	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	811					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					GAACACACTGGAAGTAACTCT	0.443													6	69					0	0	1	0	0
SYT11	23208	broad.mit.edu	37	1	155838372	155838372	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:155838372G>A	uc001fmg.2	+	2	914	c.651G>A	c.(649-651)AAG>AAA	p.K217K	SYT11_uc010pgq.1_Intron	NM_152280	NP_689493	Q9BT88	SYT11_HUMAN	synaptotagmin XI	217	Cytoplasmic (Potential).|C2 1.					cell junction|synaptic vesicle membrane	protein binding|transporter activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;0.000162)			TGCTGCGGAAGACCCTGGACC	0.557													4	53					0	0	1	0	0
LMNA	4000	broad.mit.edu	37	1	156084789	156084789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156084789C>T	uc001fni.2	+	1	329	c.80C>T	c.(79-81)ACC>ATC	p.T27I	LMNA_uc001fnf.1_Missense_Mutation_p.T27I|LMNA_uc001fng.2_Missense_Mutation_p.T27I|LMNA_uc001fnh.2_Missense_Mutation_p.T27I|LMNA_uc009wro.1_Missense_Mutation_p.T27I	NM_170707	NP_733821	P02545	LMNA_HUMAN	lamin A/C isoform 1 precursor	27	Interaction with MLIP.|Head.				cellular component disassembly involved in apoptosis|cellular response to hypoxia|establishment or maintenance of microtubule cytoskeleton polarity|muscle organ development|positive regulation of cell aging|regulation of apoptosis|regulation of cell migration	cytoplasm|lamin filament|nuclear envelope|nuclear envelope|perinuclear region of cytoplasm	protein binding|structural molecule activity|structural molecule activity			ovary(2)	2	Hepatocellular(266;0.158)					ACCCGCATCACCCGGCTGCAG	0.701									Werner_syndrome|Hutchinson-Gilford_Progeria_Syndrome				10	213					0	0	1	0	0
SEMA4A	64218	broad.mit.edu	37	1	156146351	156146351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156146351G>A	uc001fnl.2	+	15	1953	c.1849G>A	c.(1849-1851)GGA>AGA	p.G617R	SEMA4A_uc009wrq.2_Missense_Mutation_p.G617R|SEMA4A_uc001fnm.2_Missense_Mutation_p.G617R|SEMA4A_uc001fnn.2_Missense_Mutation_p.G485R|SEMA4A_uc001fno.2_Missense_Mutation_p.G617R	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	617	Extracellular (Potential).|Ig-like C2-type.				axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					AGTGCAGGATGGAGTTGGGGG	0.557													7	82					0	0	1	0	0
SMG5	23381	broad.mit.edu	37	1	156230268	156230268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156230268G>A	uc001foc.3	-	15	2406	c.2257C>T	c.(2257-2259)CGG>TGG	p.R753W	SMG5_uc009wrv.2_Missense_Mutation_p.R238W	NM_015327	NP_056142	Q9UPR3	SMG5_HUMAN	SMG5 homolog nonsense mediated mRNA decay	753					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|nucleus	protein phosphatase 2A binding			ovary(2)|skin(2)|pancreas(1)	5	Hepatocellular(266;0.158)					AGCAGGGGCCGATCCGTGTCA	0.557													15	136					0	0	1	0	0
CCT3	7203	broad.mit.edu	37	1	156279062	156279062	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156279062G>A	uc001fol.1	-	14	1786	c.1566C>T	c.(1564-1566)ATC>ATT	p.I522I	CCT3_uc001fom.1_Silent_p.I521I|CCT3_uc001fon.1_Silent_p.I484I|CCT3_uc010phj.1_Silent_p.I476I|CCT3_uc010phk.1_Silent_p.I476I|CCT3_uc010phl.1_Silent_p.I476I	NM_005998	NP_005989	P49368	TCPG_HUMAN	chaperonin containing TCP1, subunit 3 isoform a	522					'de novo' posttranslational protein folding	cytoskeleton|cytosol|plasma membrane	ATP binding|unfolded protein binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					GGCCTGAAACGATGTCATCAA	0.502													8	98					0	0	1	0	0
C1orf182	128229	broad.mit.edu	37	1	156314452	156314452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156314452C>T	uc001foo.2	+	3	478	c.116C>T	c.(115-117)TCC>TTC	p.S39F	C1orf182_uc009wry.2_Missense_Mutation_p.S39F|C1orf182_uc001fop.3_Missense_Mutation_p.S39F	NM_144627	NP_653228	Q96A04	CA182_HUMAN	SSTK-interacting protein	39											0	Hepatocellular(266;0.158)					CAAGCAAGTTCCCCACCAGCC	0.473													18	87					0	0	1	0	0
RHBG	57127	broad.mit.edu	37	1	156348107	156348107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156348107C>T	uc010pho.1	+	4	628	c.590C>T	c.(589-591)TCG>TTG	p.S197L	RHBG_uc010phm.1_Intron|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_Missense_Mutation_p.S128L|RHBG_uc009wrz.2_Missense_Mutation_p.S165L|RHBG_uc001for.2_Missense_Mutation_p.S167L	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	197	Helical; (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					CTCGTCCTTTCGCGGGTTCTG	0.627													6	133					0	0	1	0	0
RHBG	57127	broad.mit.edu	37	1	156354372	156354372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156354372G>A	uc010pho.1	+	10	1326	c.1288G>A	c.(1288-1290)GAG>AAG	p.E430K	RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_Missense_Mutation_p.R361Q|RHBG_uc009wrz.2_Missense_Mutation_p.R398Q|RHBG_uc001for.2_Missense_Mutation_p.R400Q	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	Error:Variant_position_missing_in_Q9H310_after_alignment					transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					CCAGCACTACGAGGACCAAGT	0.617											OREG0013871	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	46					0	0	1	0	0
IQGAP3	128239	broad.mit.edu	37	1	156507044	156507044	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156507044G>A	uc001fpf.2	-	27	3426	c.3351C>T	c.(3349-3351)ATC>ATT	p.I1117I		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	1117	Ras-GAP.				small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TGCGTAGGGCGATGTCCAGTC	0.557													11	69					0	0	1	0	0
NES	10763	broad.mit.edu	37	1	156641393	156641393	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156641393G>A	uc001fpq.2	-	4	2720	c.2587C>T	c.(2587-2589)CTA>TTA	p.L863L		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	863	Tail.			QGAMNPLEKEIQEPLESVEVNQETFRLLEEENQESLRSLGA WNLENLRSPEE -> KSGGNESSRKGNSRTTGVCGSEPRDI QTPGRGESGIIEISGSMEPGEFEISRG (in Ref. 1; CAA46780).	brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TCCTTTTCTAGAGGATTCATT	0.458													17	98					0	0	1	0	0
NES	10763	broad.mit.edu	37	1	156642846	156642846	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156642846G>A	uc001fpq.2	-	4	1267	c.1134C>T	c.(1132-1134)CTC>CTT	p.L378L		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	378	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TACGGGCCTGGAGGAATTCTT	0.597													10	218					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156811232	156811232	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156811232T>A	uc010pht.1	-	21	3870	c.3616A>T	c.(3616-3618)ATG>TTG	p.M1206L	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1206	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCGCCATCCATGACGAACTTC	0.602													5	69					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156811546	156811546	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156811546G>A	uc010pht.1	-	20	3692	c.3438C>T	c.(3436-3438)TAC>TAT	p.Y1146Y	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1146	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CACCCTTGCGGTAATAGTCTG	0.612													8	111					0	0	1	0	0
INSRR	3645	broad.mit.edu	37	1	156814561	156814561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156814561C>T	uc010pht.1	-	13	2766	c.2512G>A	c.(2512-2514)GAG>AAG	p.E838K	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	838	Fibronectin type-III 3.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TCTGGTGGCTCGAGCCAGCGC	0.627													10	60					0	0	1	0	0
NTRK1	4914	broad.mit.edu	37	1	156849869	156849869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156849869G>A	uc001fqh.1	+	16	2181	c.2125G>A	c.(2125-2127)GAC>AAC	p.D709N	NTRK1_uc001fqf.1_Missense_Mutation_p.D673N|NTRK1_uc009wsi.1_Missense_Mutation_p.D408N|NTRK1_uc001fqi.1_Missense_Mutation_p.D703N|NTRK1_uc009wsk.1_Missense_Mutation_p.D706N	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	709	Cytoplasmic (Potential).|Protein kinase.				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	CACCGAGAGCGACGTGTGGAG	0.647			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			7	75					0	0	1	0	0
PEAR1	375033	broad.mit.edu	37	1	156873738	156873738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156873738C>T	uc001fqj.1	+	2	136	c.20C>T	c.(19-21)CCC>CTC	p.P7L	PEAR1_uc009wsl.1_5'Flank|PEAR1_uc001fqk.1_5'Flank	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	7						integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCTCTGTGTCCCCTCCTTCTC	0.642													21	137					0	0	1	0	0
PEAR1	375033	broad.mit.edu	37	1	156882656	156882656	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156882656G>A	uc001fqj.1	+	18	2420	c.2304G>A	c.(2302-2304)GTG>GTA	p.V768V	PEAR1_uc001fqk.1_Silent_p.V393V	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	768	Helical; (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GGTCCCTTGTGGTAGCCCTGG	0.587													19	79					0	0	1	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156906636	156906636	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:156906636G>A	uc001fqo.2	-	39	5522	c.4482C>T	c.(4480-4482)AGC>AGT	p.S1494S	ARHGEF11_uc010phu.1_Silent_p.S910S|ARHGEF11_uc001fqn.2_Silent_p.S1534S|MIR765_hsa-mir-765|MI0005116_5'Flank	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	1494					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCAGTTCATGGCTGTTCCTGG	0.592													9	106					0	0	1	0	0
ETV3L	440695	broad.mit.edu	37	1	157068962	157068962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:157068962C>T	uc001fqq.1	-	2	552	c.267G>A	c.(265-267)ATG>ATA	p.M89I		NM_001004341	NP_001004341	Q6ZN32	ETV3L_HUMAN	ets variant 3-like	89	ETS.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Hepatocellular(266;0.158)	Prostate(1639;0.184)				TGTCATAATTCATCTGTGGTT	0.577													4	39					0	0	1	0	0
FCRL5	83416	broad.mit.edu	37	1	157488278	157488278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:157488278C>T	uc001fqu.2	-	15	2911	c.2753G>A	c.(2752-2754)AGA>AAA	p.R918K	FCRL5_uc009wsm.2_Splice_Site_p.E915_splice	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	918	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ATTTTCTCCTCTAGGATTTGC	0.448													12	82					0	0	1	0	0
FCRL4	83417	broad.mit.edu	37	1	157557249	157557249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:157557249C>T	uc001fqw.2	-	5	800	c.664G>A	c.(664-666)GAC>AAC	p.D222N	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	222	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				AGTGGGGTGTCTGACCGCTCT	0.517													15	87					0	0	1	0	0
FCRL3	115352	broad.mit.edu	37	1	157667118	157667118	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:157667118C>T	uc001frb.2	-	6	948	c.656G>A	c.(655-657)AGG>AAG	p.R219K	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.R219K|FCRL3_uc009wsn.2_Intron|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_5'UTR|FCRL3_uc001frc.1_Missense_Mutation_p.R219K	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	219	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					GACATCTGGCCTCTGTGGAGA	0.577													5	42					0	0	1	0	0
CD5L	922	broad.mit.edu	37	1	157803006	157803006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:157803006C>T	uc001frk.3	-	5	1158	c.1015G>A	c.(1015-1017)GAA>AAA	p.E339K		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	339	SRCR 3.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GCCACATCTTCCTGGTGGGTG	0.542													14	73					0	0	1	0	0
CD1D	912	broad.mit.edu	37	1	158151337	158151337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:158151337G>A	uc001frr.2	+	3	653	c.154G>A	c.(154-156)GAG>AAG	p.E52K	CD1D_uc009wsr.1_Missense_Mutation_p.E52K|CD1D_uc009wss.2_Missense_Mutation_p.E52K|CD1D_uc009wst.1_5'UTR	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	52	Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					GTGGCTGGGGGAGCTGCAGAC	0.652													16	210					0	0	1	0	0
CD1D	912	broad.mit.edu	37	1	158151829	158151829	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:158151829G>A	uc001frr.2	+	4	835	c.336G>A	c.(334-336)TTG>TTA	p.L112L	CD1D_uc009wsr.1_Silent_p.L112L|CD1D_uc009wss.2_Silent_p.L112L|CD1D_uc009wst.1_Silent_p.L8L	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	112	Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					CAGATCCCTTGGAGCTCCAGG	0.463													27	122					0	0	1	0	0
CD1D	912	broad.mit.edu	37	1	158151886	158151886	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:158151886C>T	uc001frr.2	+	4	892	c.393C>T	c.(391-393)TTC>TTT	p.F131F	CD1D_uc009wsr.1_Silent_p.F131F|CD1D_uc009wss.2_Silent_p.F131F|CD1D_uc009wst.1_Silent_p.F27F	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	131	Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					CAAATAACTTCTTCCATGTAG	0.498													7	185					0	0	1	0	0
CD1A	909	broad.mit.edu	37	1	158225033	158225033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:158225033G>A	uc001frt.2	+	2	751	c.218G>A	c.(217-219)GGA>GAA	p.G73E		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	73	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	TGGTCCAGGGGAAACTTCAGC	0.483													18	60					0	0	1	0	0
CD1C	911	broad.mit.edu	37	1	158261127	158261127	+	Missense_Mutation	SNP	C	T	T	rs145638725		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:158261127C>T	uc001fru.2	+	2	557	c.265C>T	c.(265-267)CGT>TGT	p.R89C	CD1C_uc001frv.2_5'Flank	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	89	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding	p.R89C(1)		ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					GTTGTTATTTCGTTTCTACCT	0.398													11	31					0	0	1	0	0
CD1C	911	broad.mit.edu	37	1	158262155	158262155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:158262155G>A	uc001fru.2	+	3	902	c.610G>A	c.(610-612)GTG>ATG	p.V204M	CD1C_uc001frv.2_Missense_Mutation_p.V7M	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	204	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					ACACAGGCAAGGTCAGTAGTT	0.463													8	138					0	0	1	0	0
OR10K2	391107	broad.mit.edu	37	1	158390494	158390494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:158390494G>A	uc010pii.1	-	1	163	c.163C>T	c.(163-165)CTT>TTT	p.L55F		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	55	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					GGGATATGAAGGGCCCTGTCC	0.502													4	12					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158592942	158592942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:158592942C>T	uc001fst.1	-	43	6150	c.5951G>A	c.(5950-5952)AGA>AAA	p.R1984K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1984	Spectrin 19.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTCGGGAAGTCTCTCTTGCTG	0.498													30	237					0	0	1	0	0
OR6K2	81448	broad.mit.edu	37	1	158670049	158670049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:158670049G>A	uc001fsu.1	-	1	394	c.394C>T	c.(394-396)CCC>TCC	p.P132S		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	132	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					ATGATAGAGGGATAATGAAGA	0.478													10	37					0	0	1	0	0
MNDA	4332	broad.mit.edu	37	1	158813902	158813902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:158813902C>T	uc001fsz.1	+	4	760	c.560C>T	c.(559-561)TCG>TTG	p.S187L		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	187					B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					TCCAACACTTCGTTTACTCCG	0.493													10	84					0	0	1	0	0
PYHIN1	149628	broad.mit.edu	37	1	158908248	158908248	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:158908248G>A	uc001ftb.2	+	3	572	c.327G>A	c.(325-327)CAG>CAA	p.Q109Q	PYHIN1_uc001fta.3_Silent_p.Q109Q|PYHIN1_uc001ftc.2_Silent_p.Q100Q|PYHIN1_uc001ftd.2_Silent_p.Q109Q|PYHIN1_uc001fte.2_Silent_p.Q100Q	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	109					cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					AGACGAAACAGAAAGAAGTGT	0.428													9	53					0	0	1	0	0
AIM2	9447	broad.mit.edu	37	1	159038487	159038487	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:159038487A>T	uc001ftj.1	-	3	512	c.267T>A	c.(265-267)GAT>GAA	p.D89E		NM_004833	NP_004824	O14862	AIM2_HUMAN	absent in melanoma 2	89					cellular response to drug|immune response|interleukin-1 beta secretion	mitochondrion|nucleus				ovary(2)|pancreas(1)	3	all_hematologic(112;0.0429)					TGTATTGCTTATCAACTGATT	0.249													9	38					0	0	1	0	0
OR10J3	441911	broad.mit.edu	37	1	159283652	159283652	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:159283652C>T	uc010piu.1	-	1	798	c.798G>A	c.(796-798)CAG>CAA	p.Q266Q		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					CCAGGGAACTCTGGGACTTAG	0.527													4	12					0	0	1	0	0
OR10J1	26476	broad.mit.edu	37	1	159409980	159409980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:159409980G>A	uc010piv.1	+	1	432	c.432G>A	c.(430-432)ATG>ATA	p.M144I	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	144	Cytoplasmic (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					TGAGATACATGGTTATTATGA	0.468													9	35					0	0	1	0	0
OR10J5	127385	broad.mit.edu	37	1	159505359	159505359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:159505359C>T	uc010piw.1	-	1	439	c.439G>A	c.(439-441)GGG>AGG	p.G147R		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					CCAAAGGACCCACACACCAGC	0.512													4	41					0	0	1	0	0
CRP	1401	broad.mit.edu	37	1	159683580	159683580	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:159683580T>A	uc001ftw.2	-	2	514	c.410A>T	c.(409-411)AAG>ATG	p.K137M	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_RNA	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	137	Pentaxin.				acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	CTTCAGACTCTTCCTCACCCT	0.547													11	254					0	0	1	0	0
FCRL6	343413	broad.mit.edu	37	1	159779424	159779424	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:159779424G>A	uc001fud.3	+	5	879	c.837G>A	c.(835-837)GAG>GAA	p.E279E	FCRL6_uc001fuc.2_Silent_p.E286E|FCRL6_uc009wsz.1_Silent_p.E184E|FCRL6_uc009wta.2_Silent_p.E279E	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	279	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					GCGAGGCTGAGAACAGTGTCT	0.557													5	45					0	0	1	0	0
FCRL6	343413	broad.mit.edu	37	1	159783291	159783291	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:159783291C>T	uc001fud.3	+	7	1064	c.1022C>T	c.(1021-1023)TCC>TTC	p.S341F	FCRL6_uc001fuc.2_Missense_Mutation_p.S348F|FCRL6_uc009wsz.1_Missense_Mutation_p.S246F|FCRL6_uc009wta.2_Missense_Mutation_p.S341F	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	341	Cytoplasmic (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					CCCCTTCCATCCCAGATACCA	0.562													9	58					0	0	1	0	0
CCDC19	25790	broad.mit.edu	37	1	159842769	159842769	+	Silent	SNP	G	A	A	rs144795673		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:159842769G>A	uc001fui.2	-	11	1560	c.1542C>T	c.(1540-1542)ATC>ATT	p.I514I	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Silent_p.I429I|CCDC19_uc001ful.2_Silent_p.I429I	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	514	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			TGATCTCATCGATGCGCTCAC	0.572													6	54					0	0	1	0	0
IGSF9	57549	broad.mit.edu	37	1	159899586	159899586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:159899586G>A	uc001fur.2	-	17	2366	c.2168C>T	c.(2167-2169)TCG>TTG	p.S723L	IGSF9_uc001fuq.2_Missense_Mutation_p.S707L|IGSF9_uc001fup.2_5'UTR	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	723	Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			CTGCGTGCGCGAAGGGTAGAC	0.697													5	9					0	0	1	0	0
IGSF9	57549	broad.mit.edu	37	1	159901303	159901303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:159901303C>T	uc001fur.2	-	12	1651	c.1453G>A	c.(1453-1455)GAA>AAA	p.E485K	IGSF9_uc001fuq.2_Missense_Mutation_p.E469K|IGSF9_uc001fup.2_5'UTR	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	485	Ig-like 5.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			GCACTGCATTCCCAGTGCCCG	0.642													10	55					0	0	1	0	0
SLAMF9	89886	broad.mit.edu	37	1	159922126	159922126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:159922126G>A	uc001fus.2	-	3	707	c.590C>T	c.(589-591)TCC>TTC	p.S197F	SLAMF9_uc009wtd.2_Intron|SLAMF9_uc001fut.2_Intron	NM_033438	NP_254273	Q96A28	SLAF9_HUMAN	SLAM family member 9 isoform 1	197	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GCAGGTGTAGGAGAGGGCACT	0.587													13	73					0	0	1	0	0
PIGM	93183	broad.mit.edu	37	1	160000969	160000969	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160000969G>A	uc001fuv.1	-	1	815	c.561C>T	c.(559-561)ATC>ATT	p.I187I		NM_145167	NP_660150	Q9H3S5	PIGM_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	187	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TTATGGGAAGGATGTAAGTCA	0.468													13	105					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160093110	160093110	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160093110C>T	uc001fvc.2	+	4	417	c.285C>T	c.(283-285)TTC>TTT	p.F95F	ATP1A2_uc001fvb.2_Silent_p.F95F|ATP1A2_uc010piz.1_5'Flank	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	95	Helical; (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GTCAGCTTTTCGGGGGGTTCT	0.602													27	191					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160100341	160100341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160100341C>T	uc001fvc.2	+	13	1913	c.1781C>T	c.(1780-1782)GCT>GTT	p.A594V	ATP1A2_uc001fvb.2_Missense_Mutation_p.A594V|ATP1A2_uc001fvd.2_Missense_Mutation_p.A330V|ATP1A2_uc009wtg.1_Missense_Mutation_p.A282V	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	594	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CCTCCCCGGGCTGCTGTGCCA	0.567													7	52					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160105381	160105381	+	Missense_Mutation	SNP	G	A	A	rs147183887		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160105381G>A	uc001fvc.2	+	16	2405	c.2273G>A	c.(2272-2274)GGG>GAG	p.G758E	ATP1A2_uc001fvb.2_Missense_Mutation_p.G758E|ATP1A2_uc001fvd.2_Missense_Mutation_p.G494E	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	758	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			ATCGTCACGGGGGTGGAGGAG	0.562													7	47					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160106361	160106361	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160106361G>A	uc001fvc.2	+	19	2697	c.2565G>A	c.(2563-2565)GGG>GGA	p.G855G	ATP1A2_uc001fvb.2_Silent_p.G855G|ATP1A2_uc001fvd.2_Intron	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	855	Helical; (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity	p.G855E(1)		central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			TACCCACAGGGATGATCCAGG	0.607													4	61					0	0	1	0	0
ATP1A4	480	broad.mit.edu	37	1	160143392	160143392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160143392C>T	uc001fve.3	+	13	2355	c.1876C>T	c.(1876-1878)CAT>TAT	p.H626Y	ATP1A4_uc001fvf.3_RNA|ATP1A4_uc001fvg.2_Missense_Mutation_p.H129Y	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	626	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			AACAGGAGATCATCCCATTAC	0.522													9	93					0	0	1	0	0
ATP1A4	480	broad.mit.edu	37	1	160156126	160156126	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160156126C>T	uc001fve.3	+	21	3509	c.3030C>T	c.(3028-3030)ATC>ATT	p.I1010I	ATP1A4_uc001fvf.3_RNA|ATP1A4_uc001fvg.2_Silent_p.I513I|ATP1A4_uc001fvh.2_Silent_p.I146I	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	1010	Helical; (Potential).			ITWWLCAIPYSILIFVYDEIRKLLIRQ -> WSFALTAQAG VKWRILGLLQPLPPRFK (in Ref. 6; BAC05228).	ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			ATGATGAAATCAGAAAACTCC	0.562													28	220					0	0	1	0	0
CASQ1	844	broad.mit.edu	37	1	160163632	160163632	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160163632C>G	uc010pja.1	+	3	717	c.460C>G	c.(460-462)CTT>GTT	p.L154V		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	154						mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GGAGTTTCTGCTTGATGTAAG	0.493													3	88					0	0	1	0	0
CASQ1	844	broad.mit.edu	37	1	160165264	160165264	+	Silent	SNP	C	T	T	rs141157148	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160165264C>T	uc010pja.1	+	5	848	c.591C>T	c.(589-591)TTC>TTT	p.F197F		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	197						mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			ACAAAGCCTTCGAGGATGCAG	0.557													12	74					0	0	1	0	0
CASQ1	844	broad.mit.edu	37	1	160168518	160168519	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160168518_160168519CC>TT	uc010pja.1	+	8	1137_1138	c.880_881CC>TT	c.(880-882)CCT>TTT	p.P294F		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	294						mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GGAAGCTGATCCTGGTGAGGGA	0.535													7	110					0	0	1	0	0
PEX19	5824	broad.mit.edu	37	1	160252888	160252888	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160252888G>A	uc001fvs.2	-	3	219	c.192C>T	c.(190-192)TTC>TTT	p.F64F	DCAF8_uc010pjc.1_5'UTR|PEX19_uc010pje.1_RNA|PEX19_uc001fvt.2_5'UTR	NM_002857	NP_002848	P40855	PEX19_HUMAN	peroxisomal biogenesis factor 19 isoform a	64	Necessary for PEX19 function on peroxisome biogenesis.				peroxisome membrane biogenesis|peroxisome organization|protein targeting to peroxisome|transmembrane transport	brush border membrane|cytosol|integral to membrane|nucleus|peroxisomal membrane	protein binding|protein N-terminus binding				0	all_cancers(52;1.27e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CTTGGGAAGCGAAGAGGGCAT	0.537													5	99					0	0	1	0	0
COPA	1314	broad.mit.edu	37	1	160293284	160293284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160293284G>A	uc009wti.2	-	8	1037	c.643C>T	c.(643-645)CCC>TCC	p.P215S	COPA_uc001fvv.3_Missense_Mutation_p.P215S|COPA_uc009wtj.1_Missense_Mutation_p.P161S	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	215	WD 5.				COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GGCATAGTGGGGTGGAAGGCA	0.438													3	30					0	0	1	0	0
NHLH1	4807	broad.mit.edu	37	1	160340542	160340542	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160340542C>T	uc001fwa.2	+	2	463	c.21C>T	c.(19-21)ACC>ACT	p.T7T		NM_005598	NP_005589	Q02575	HEN1_HUMAN	nescient helix loop helix 1	7					cell differentiation|central nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	all_cancers(52;7.11e-19)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			ACTCAGACACCATGGAGCTGG	0.667													5	55					0	0	1	0	0
VANGL2	57216	broad.mit.edu	37	1	160393950	160393950	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160393950C>T	uc001fwb.1	+	8	1481	c.1182C>T	c.(1180-1182)ATC>ATT	p.I394I	VANGL2_uc001fwc.1_Silent_p.I394I	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	394	Cytoplasmic (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CCCAAGCCATCTTTGCATCCA	0.592													6	51					0	0	1	0	0
CD84	8832	broad.mit.edu	37	1	160535240	160535240	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160535240C>T	uc001fwh.3	-	2	366	c.342G>A	c.(340-342)CAG>CAA	p.Q114Q	CD84_uc001fwf.3_Silent_p.Q114Q|CD84_uc001fwg.3_Silent_p.Q114Q|CD84_uc009wtn.2_Silent_p.Q114Q|CD84_uc001fwi.3_Intron|CD84_uc001fwj.2_Silent_p.Q114Q|CD84_uc001fwk.2_Silent_p.Q114Q	NM_003874	NP_003865	Q9UIB8	SLAF5_HUMAN	CD84 molecule	114	Extracellular (Potential).				blood coagulation|defense response|homophilic cell adhesion|leukocyte migration	integral to plasma membrane	receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(52;3.62e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			AGGGATCAGCCTGTGTATTTA	0.443													5	30					0	0	1	0	0
SLAMF1	6504	broad.mit.edu	37	1	160589593	160589593	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160589593C>T	uc001fwl.3	-	5	1183	c.837G>A	c.(835-837)ACG>ACA	p.T279T	SLAMF1_uc010pjk.1_Intron|SLAMF1_uc010pjl.1_Intron|SLAMF1_uc010pjm.1_Intron	NM_003037	NP_003028	Q13291	SLAF1_HUMAN	signaling lymphocytic activation molecule family	279	Cytoplasmic (Potential).|Ig-like V-type.				interspecies interaction between organisms|lymphocyte activation|positive regulation of cell proliferation	integral to membrane	antigen binding|transmembrane receptor activity			ovary(1)|breast(1)	2	all_cancers(52;4.94e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			GGGCATAGATCGTAAGGCTTT	0.443													8	28					0	0	1	0	0
SLAMF7	57823	broad.mit.edu	37	1	160718175	160718175	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160718175T>C	uc001fwq.2	+	2	262	c.247T>C	c.(247-249)TTC>CTC	p.F83L	SLAMF7_uc010pjn.1_Intron|SLAMF7_uc001fws.2_Intron|SLAMF7_uc001fwr.2_Missense_Mutation_p.F83L|SLAMF7_uc010pjo.1_Missense_Mutation_p.F83L|SLAMF7_uc010pjp.1_Intron|SLAMF7_uc010pjq.1_Missense_Mutation_p.F83L|SLAMF7_uc010pjr.1_Intron	NM_021181	NP_067004	Q9NQ25	SLAF7_HUMAN	SLAM family member 7	83	Extracellular (Potential).				cell adhesion|natural killer cell activation|natural killer cell mediated cytotoxicity	integral to membrane	receptor activity			skin(2)|ovary(1)	3	all_cancers(52;2.63e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			GAGAGTAGACTTCCCAGATGG	0.493													2	7					0	0	1	0	0
ITLN1	55600	broad.mit.edu	37	1	160851087	160851087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160851087C>T	uc001fxc.2	-	5	537	c.421G>A	c.(421-423)GAC>AAC	p.D141N		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	141	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			GCCTGGATGTCGTAGTAGCCA	0.592													5	74					0	0	1	0	0
F11R	50848	broad.mit.edu	37	1	160970878	160970878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:160970878G>A	uc009wtt.2	-	3	443	c.173C>T	c.(172-174)CCC>CTC	p.P58L	F11R_uc010pjv.1_Missense_Mutation_p.P58L|F11R_uc001fxe.3_Missense_Mutation_p.P58L|F11R_uc009wtu.2_Missense_Mutation_p.P58L|F11R_uc010pjw.1_Missense_Mutation_p.P62L|F11R_uc001fxf.3_Missense_Mutation_p.P58L	NM_016946	NP_058642	Q9Y624	JAM1_HUMAN	F11 receptor precursor	58	Extracellular (Potential).|Ig-like V-type 1.				blood coagulation|inflammatory response|interspecies interaction between organisms|leukocyte migration|tight junction assembly	integral to membrane|tight junction				ovary(2)	2	all_cancers(52;6.73e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00207)			CTCCACACGGGGAGAAGAAAA	0.498													3	33					0	0	1	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161017845	161017845	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:161017845C>T	uc001fxl.2	-	12	3312	c.2966G>A	c.(2965-2967)TGG>TAG	p.W989*	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Nonsense_Mutation_p.W778*|ARHGAP30_uc001fxm.2_Nonsense_Mutation_p.W835*|ARHGAP30_uc009wtx.2_Nonsense_Mutation_p.W662*	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	989					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			CCCATTCCTCCAAGAGGATCG	0.592													19	76					0	0	1	0	0
USP21	27005	broad.mit.edu	37	1	161135152	161135152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:161135152C>T	uc010pke.1	+	14	1990	c.1613C>T	c.(1612-1614)TCC>TTC	p.S538F	USP21_uc010pkf.1_Missense_Mutation_p.S538F|PPOX_uc001fyj.2_5'Flank|PPOX_uc001fyn.2_5'Flank|PPOX_uc001fyg.2_5'Flank|PPOX_uc001fyl.2_5'Flank|PPOX_uc001fym.2_5'Flank|PPOX_uc001fyk.2_5'Flank|PPOX_uc001fyh.2_5'Flank|PPOX_uc010pkg.1_5'Flank|PPOX_uc009wuc.1_5'Flank|PPOX_uc010pkh.1_5'Flank|PPOX_uc001fyi.2_5'Flank	NM_001014443	NP_001014443	Q9UK80	UBP21_HUMAN	ubiquitin-specific protease 21	538					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding|NEDD8-specific protease activity|protein binding|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)|prostate(1)|breast(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			CCTAGTGTCTCCCCTGTCAGT	0.532													6	43					0	0	1	0	0
ADAMTS4	9507	broad.mit.edu	37	1	161163811	161163811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:161163811G>A	uc001fyt.3	-	5	1890	c.1462C>T	c.(1462-1464)CCC>TCC	p.P488S		NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	488	Disintegrin.				proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			TCGGCCCAGGGCGAGTGTTTG	0.657													10	64					0	0	1	0	0
ADAMTS4	9507	broad.mit.edu	37	1	161167980	161167980	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:161167980C>T	uc001fyt.3	-	1	866	c.438G>A	c.(436-438)GGG>GGA	p.G146G	ADAMTS4_uc001fyu.2_Silent_p.G146G|NDUFS2_uc001fyv.2_5'Flank	NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	146					proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			ACAGGGCTCCCCCATCCCAGT	0.642													15	63					0	0	1	0	0
TOMM40L	84134	broad.mit.edu	37	1	161198820	161198820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:161198820C>T	uc001fzd.2	+	10	1091	c.862C>T	c.(862-864)CTT>TTT	p.L288F	TOMM40L_uc010pkl.1_Missense_Mutation_p.L254F|TOMM40L_uc009wue.2_Missense_Mutation_p.L170F|TOMM40L_uc009wuf.1_RNA|TOMM40L_uc001fze.2_Missense_Mutation_p.L288F	NM_032174	NP_115550	Q969M1	TM40L_HUMAN	translocase of outer mitochondrial membrane 40	288	Required for mitochondrial targeting (By similarity).				protein transport	mitochondrial outer membrane|pore complex	porin activity|voltage-gated anion channel activity			large_intestine(1)	1	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			CACCCTAGCCCTTGGAGCCTT	0.567													17	100					0	0	1	0	0
TOMM40L	84134	broad.mit.edu	37	1	161198855	161198855	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:161198855C>T	uc001fzd.2	+	10	1126	c.897C>T	c.(895-897)TTC>TTT	p.F299F	TOMM40L_uc010pkl.1_Silent_p.F265F|TOMM40L_uc009wue.2_Silent_p.F181F|TOMM40L_uc009wuf.1_RNA|TOMM40L_uc001fze.2_Silent_p.F299F	NM_032174	NP_115550	Q969M1	TM40L_HUMAN	translocase of outer mitochondrial membrane 40	299	Required for mitochondrial targeting (By similarity).				protein transport	mitochondrial outer membrane|pore complex	porin activity|voltage-gated anion channel activity			large_intestine(1)	1	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			GCAACAGATTCCATTGTGGCT	0.572													13	71					0	0	1	0	0
HSPA7	3311	broad.mit.edu	37	1	161576375	161576375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:161576375G>A	uc010pkp.1	+	1	527	c.295G>A	c.(295-297)GAG>AAG	p.E99K		NR_024151				RecName: Full=Putative heat shock 70 kDa protein 7; AltName: Full=Heat shock 70 kDa protein B;												0						GGTGGTGAGCGAGGGCGGCAA	0.622													20	76					0	0	1	0	0
ATF6	22926	broad.mit.edu	37	1	161928323	161928323	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:161928323C>T	uc001gbr.2	+	16	1959	c.1892C>T	c.(1891-1893)TCG>TTG	p.S631L	ATF6_uc001gbs.2_5'Flank	NM_007348	NP_031374	P18850	ATF6A_HUMAN	activating transcription factor 6	631	Lumenal (Potential).				positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response|protein folding	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|skin(1)	3	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.00953)			ATCAAAAGTTCGTCAGTTCCT	0.517													6	66					0	0	1	0	0
OLFML2B	25903	broad.mit.edu	37	1	161954705	161954705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:161954705C>T	uc001gbu.2	-	7	1964	c.1540G>A	c.(1540-1542)GAA>AAA	p.E514K	OLFML2B_uc001gbt.2_5'UTR|OLFML2B_uc010pkq.1_Missense_Mutation_p.E515K	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	514	Olfactomedin-like.									skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			CAGGCCCCTTCATTCCGCCCA	0.557													7	125					0	0	1	0	0
C1orf226	400793	broad.mit.edu	37	1	162353002	162353002	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:162353002G>A	uc001gby.2	+	2	520	c.348G>A	c.(346-348)CTG>CTA	p.L116L	C1orf226_uc010pkt.1_Silent_p.L159L	NM_001085375	NP_001078844	A1L170	CA226_HUMAN	hypothetical protein LOC400793 isoform 2	116										ovary(1)	1						TTCCTCGGCTGGATCCTCCAC	0.517													6	35					0	0	1	0	0
DDR2	4921	broad.mit.edu	37	1	162724981	162724981	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:162724981C>T	uc001gcf.2	+	7	918	c.453C>T	c.(451-453)TTC>TTT	p.F151F	DDR2_uc001gcg.2_Silent_p.F151F	NM_001014796	NP_001014796	Q16832	DDR2_HUMAN	discoidin domain receptor family, member 2	151	Extracellular (Potential).|F5/8 type C.				cell adhesion	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(2)|central_nervous_system(2)|ovary(1)|kidney(1)	6	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.113)			ATGACATTTTCCTAAAGGACT	0.468													6	28					0	0	1	0	0
NUF2	83540	broad.mit.edu	37	1	163310176	163310176	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:163310176C>T	uc001gcq.1	+	9	929	c.629C>T	c.(628-630)TCC>TTC	p.S210F	NUF2_uc001gcp.2_Missense_Mutation_p.S210F|NUF2_uc001gcr.1_Missense_Mutation_p.S210F|NUF2_uc009wvc.1_Missense_Mutation_p.S210F	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component	210	Interaction with the N-terminus of NDC80.|Potential.				cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					GAGGGAAATTCCCAAAAGAAG	0.323													9	71					0	0	1	0	0
RXRG	6258	broad.mit.edu	37	1	165370563	165370563	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:165370563G>A	uc001gda.2	-	10	1629	c.1329C>T	c.(1327-1329)ATC>ATT	p.I443I		NM_006917	NP_008848	P48443	RXRG_HUMAN	retinoid X receptor, gamma isoform a	443	Ligand-binding (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tretinoin(DB00755)	GGGTGTCCCCGATGAGCTTGA	0.602													20	95					0	0	1	0	0
LRRC52	440699	broad.mit.edu	37	1	165513553	165513553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:165513553C>T	uc001gde.2	+	1	76	c.20C>T	c.(19-21)CCT>CTT	p.P7L	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	7						integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					GCTTCAGGCCCTGGCCCTGGG	0.547													4	70					0	0	1	0	0
LRRC52	440699	broad.mit.edu	37	1	165513786	165513786	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:165513786C>T	uc001gde.2	+	1	309	c.253C>T	c.(253-255)CAG>TAG	p.Q85*	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	85	LRR 2.|Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					TTTGGACTGTCAGAACAACCG	0.493													26	118					0	0	1	0	0
LRRC52	440699	broad.mit.edu	37	1	165533028	165533028	+	Silent	SNP	G	A	A	rs148593286	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:165533028G>A	uc001gde.2	+	2	965	c.909G>A	c.(907-909)ACG>ACA	p.T303T	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	303	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					AAACCCAGACGAGCTCGGTCC	0.567													15	88					0	0	1	0	0
ALDH9A1	223	broad.mit.edu	37	1	165649900	165649900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:165649900G>A	uc001gdh.1	-	5	718	c.613C>T	c.(613-615)CCT>TCT	p.P205S	ALDH9A1_uc010pky.1_Missense_Mutation_p.P111S|ALDH9A1_uc010pkz.1_Missense_Mutation_p.P195S|ALDH9A1_uc010pla.1_Missense_Mutation_p.P111S	NM_000696	NP_000687	P49189	AL9A1_HUMAN	aldehyde dehydrogenase 9A1	181					carnitine biosynthetic process|cellular aldehyde metabolic process|hormone metabolic process|neurotransmitter biosynthetic process	cytosol|plasma membrane	3-chloroallyl aldehyde dehydrogenase activity|4-trimethylammoniobutyraldehyde dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|aminobutyraldehyde dehydrogenase activity				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				NADH(DB00157)	AAGGGAGAAGGTTTAAAGACC	0.468													5	24					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167082994	167082994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:167082994C>T	uc001geb.1	+	2	158	c.158C>T	c.(157-159)CCC>CTC	p.P53L		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	53					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						TTCATGGAACCCATTCACCTC	0.458													22	139					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167097246	167097246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:167097246G>A	uc001geb.1	+	5	2878	c.2878G>A	c.(2878-2880)GGG>AGG	p.G960R		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	960	Ser-rich.				protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						AAGTTCCAGAGGGAAGTACAC	0.488													5	24					0	0	1	0	0
POU2F1	5451	broad.mit.edu	37	1	167381364	167381364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:167381364C>T	uc001gec.2	+	15	1817	c.1655C>T	c.(1654-1656)CCT>CTT	p.P552L	POU2F1_uc001ged.2_Missense_Mutation_p.P550L|POU2F1_uc001gee.2_Missense_Mutation_p.P552L|POU2F1_uc010plh.1_Missense_Mutation_p.P489L|POU2F1_uc001gef.2_Missense_Mutation_p.P564L|POU2F1_uc001geg.2_Missense_Mutation_p.P450L|POU2F1_uc009wvg.1_RNA	NM_002697	NP_002688	P14859	PO2F1_HUMAN	POU class 2 homeobox 1	552					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|skin(2)|breast(1)	5						ACCTCCACTCCTTTGTCCTCC	0.602													8	23					0	0	1	0	0
RCSD1	92241	broad.mit.edu	37	1	167666899	167666899	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:167666899G>A	uc001gem.2	+	6	1225	c.1038G>A	c.(1036-1038)AAG>AAA	p.K346K	RCSD1_uc010pli.1_Silent_p.K316K	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	346										ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					CTGCAGTGAAGGAGACCCCCC	0.572													3	20					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167787464	167787464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:167787464G>A	uc001ger.2	-	31	4626	c.4328C>T	c.(4327-4329)TCC>TTC	p.S1443F	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Missense_Mutation_p.S1351F|ADCY10_uc010plj.1_Missense_Mutation_p.S1290F	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1443					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						AGCTCTATTGGAAAATTTGTA	0.383													6	49					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167793932	167793932	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:167793932G>A	uc001ger.2	-	27	4210	c.3912C>T	c.(3910-3912)TTC>TTT	p.F1304F	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Silent_p.F1212F|ADCY10_uc010plj.1_Silent_p.F1151F	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1304					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TGAGCTTGTTGAAGACCAGTG	0.498													15	201					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167865909	167865909	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:167865909G>A	uc001ger.2	-	7	961	c.663C>T	c.(661-663)CCC>CCT	p.P221P	ADCY10_uc009wvk.2_Silent_p.P129P|ADCY10_uc010plj.1_Silent_p.P68P|ADCY10_uc009wvl.2_Silent_p.P220P|ADCY10_uc009wvm.2_RNA	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	221					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TAAAATTGGGGGGTGGTTTTA	0.328													29	142					0	0	1	0	0
DCAF6	55827	broad.mit.edu	37	1	168014372	168014372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:168014372C>T	uc001gew.2	+	14	2176	c.1934C>T	c.(1933-1935)TCC>TTC	p.S645F	DCAF6_uc001gev.2_Missense_Mutation_p.S665F|DCAF6_uc001gex.2_Missense_Mutation_p.S722F|DCAF6_uc010plk.1_Missense_Mutation_p.S691F|DCAF6_uc001gey.2_Missense_Mutation_p.S518F|DCAF6_uc001gez.2_5'UTR	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	645					positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GAAGAAACATCCACCAGGGAC	0.502													5	16					0	0	1	0	0
TBX19	9095	broad.mit.edu	37	1	168260458	168260458	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:168260458C>T	uc001gfl.2	+	2	315	c.264C>T	c.(262-264)TCC>TCT	p.S88S	TBX19_uc001gfj.3_Silent_p.S19S	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	88	T-box.				anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					CCATGTACTCCCTCCTGCTGG	0.557													12	94					0	0	1	0	0
TBX19	9095	broad.mit.edu	37	1	168274352	168274352	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:168274352C>T	uc001gfl.2	+	6	885	c.834C>T	c.(832-834)GGC>GGT	p.G278G	TBX19_uc001gfj.3_Intron|TBX19_uc001gfm.2_5'UTR	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	278					anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					CCCACCATGGCTGTGAGCACT	0.562													20	97					0	0	1	0	0
DPT	1805	broad.mit.edu	37	1	168698195	168698195	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:168698195C>T	uc001gfp.2	-	1	234	c.218G>A	c.(217-219)TGG>TAG	p.W73*		NM_001937	NP_001928	Q07507	DERM_HUMAN	dermatopontin precursor	73	2 X 53-55 AA tandem repeats.|1-1.|3 X 6 AA repeats of D-R-[EQ]-W-[NQK]- [FY].|2-1.				cell adhesion	extracellular space|proteinaceous extracellular matrix				ovary(1)	1	all_hematologic(923;0.208)					GGCGTAGTTCCATTGTCTGTC	0.582													6	111					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169512096	169512096	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:169512096C>T	uc001ggg.1	-	13	2377	c.2232G>A	c.(2230-2232)TTG>TTA	p.L744L		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	744	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	CTTCCTGATTCAATGATGAGT	0.393													5	31					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169528509	169528509	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:169528509C>T	uc001ggg.1	-	5	757	c.612G>A	c.(610-612)CAG>CAA	p.Q204Q	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	204	F5/8 type A 1.|Plastocyanin-like 2.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	CAAACGTCTTCTGTGTCCCAC	0.443													3	16					0	0	1	0	0
SELP	6403	broad.mit.edu	37	1	169586417	169586417	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:169586417G>A	uc001ggi.3	-	3	395	c.330C>T	c.(328-330)CTC>CTT	p.L110L	SELP_uc001ggh.2_5'UTR|SELP_uc009wvr.2_Silent_p.L110L	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	110	Extracellular (Potential).|C-type lectin.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CCTCGTTGGTGAGAGCCTTTT	0.478													21	70					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169697039	169697040	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:169697039_169697040GG>AA	uc001ggm.3	-	9	1465_1466	c.1308_1309CC>TT	c.(1306-1311)CCCCCG>CCTTCG	p.P437S	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	437	Extracellular (Potential).|Sushi 5.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					AAACCCTTCGGGGGCTGGTGGA	0.49													4	36					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169698647	169698647	+	Missense_Mutation	SNP	C	T	T	rs5364	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:169698647C>T	uc001ggm.3	-	6	1040	c.883G>A	c.(883-885)GAG>AAG	p.E295K	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	295	Sushi 2.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					GTTGGCTTCTCGTTGTCCCAA	0.458													8	25					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169699608	169699608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:169699608G>A	uc001ggm.3	-	5	837	c.680C>T	c.(679-681)TCT>TTT	p.S227F	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	227	Sushi 1.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					CCATTCTCCAGAGGACATACA	0.473													8	29					0	0	1	0	0
SCYL3	57147	broad.mit.edu	37	1	169847945	169847945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:169847945G>A	uc001ggs.2	-	3	379	c.181C>T	c.(181-183)CGT>TGT	p.R61C	SCYL3_uc001ggt.2_Missense_Mutation_p.R61C|SCYL3_uc001ggu.2_RNA	NM_181093	NP_851607	Q8IZE3	PACE1_HUMAN	SCY1-like 3 isoform 2	61	Protein kinase.				cell migration	Golgi apparatus|lamellipodium	ATP binding|protein binding|protein kinase activity			ovary(1)|skin(1)	2	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CAAGGGTGACGAAGTGTCTTC	0.408													5	107					0	0	1	0	0
MYOC	4653	broad.mit.edu	37	1	171621638	171621638	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:171621638C>T	uc001ghu.2	-	1	136	c.114G>A	c.(112-114)AGG>AGA	p.R38R	MYOC_uc010pmk.1_Silent_p.R38R	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	38					anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					CATTGGCCTTCCTGAGCTGAG	0.607													5	29					0	0	1	0	0
FASLG	356	broad.mit.edu	37	1	172628678	172628678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:172628678G>A	uc001gis.2	+	1	494	c.337G>A	c.(337-339)GAA>AAA	p.E113K	FASLG_uc001git.2_Missense_Mutation_p.E113K	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	113	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						GGAGCTGGCAGAACTCCGAGA	0.562													5	25					0	0	1	0	0
FASLG	356	broad.mit.edu	37	1	172634991	172634992	+	Nonsense_Mutation	DNP	GA	AT	AT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:172634991_172634992GA>AT	uc001gis.2	+	4	838_839	c.681_682GA>AT	c.(679-684)GGGAAG>GGATAG	p.K228*	FASLG_uc001git.2_3'UTR	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	228	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						TGATGGAGGGGAAGATGATGAG	0.51													4	50					0	0	1	0	0
FASLG	356	broad.mit.edu	37	1	172635073	172635073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:172635073G>A	uc001gis.2	+	4	920	c.763G>A	c.(763-765)GAT>AAT	p.D255N	FASLG_uc001git.2_3'UTR	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	255	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						TACCAGTGCTGATCATTTATA	0.473													8	66					0	0	1	0	0
SLC9A11	284525	broad.mit.edu	37	1	173470236	173470236	+	Silent	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:173470236A>G	uc001giz.2	-	28	3795	c.3372T>C	c.(3370-3372)AGT>AGC	p.S1124S	SLC9A11_uc009wwe.2_Silent_p.S682S	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	1124					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						CCAGTTTTCAACTATAAAAGA	0.299													4	14					0	0	1	0	0
SLC9A11	284525	broad.mit.edu	37	1	173526555	173526556	+	Missense_Mutation	DNP	AT	TC	TC			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:173526555_173526556AT>TC	uc001giz.2	-	10	1561_1562	c.1138_1139AT>GA	c.(1138-1140)ATT>GAT	p.I380D	SLC9A11_uc009wwe.2_5'UTR|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	380	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						AACTCCTTTAATTCCAGACCAC	0.376													7	119					0	0	1	0	0
SERPINC1	462	broad.mit.edu	37	1	173881128	173881128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:173881128C>T	uc001gjt.2	-	3	552	c.433G>A	c.(433-435)GAG>AAG	p.E145K		NM_000488	NP_000479	P01008	ANT3_HUMAN	serpin peptidase inhibitor, clade C, member 1	145					blood coagulation|regulation of proteolysis	extracellular space|plasma membrane	heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(1)	1					Enoxaparin(DB01225)|Fondaparinux sodium(DB00569)|Heparin(DB01109)	GATGTTTTCTCAGATATGGTG	0.433													9	44					0	0	1	0	0
RABGAP1L	9910	broad.mit.edu	37	1	174721469	174721469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:174721469C>T	uc001gjx.2	+	18	2383	c.2188C>T	c.(2188-2190)CAT>TAT	p.H730Y	RABGAP1L_uc001gkb.3_5'UTR|RABGAP1L_uc001gkc.3_Missense_Mutation_p.H37Y|RABGAP1L_uc001gkd.3_Missense_Mutation_p.H56Y	NM_014857	NP_055672	Q5R372	RBG1L_HUMAN	RAB GTPase activating protein 1-like isoform A	730					regulation of protein localization	early endosome|Golgi apparatus|nucleus	Rab GTPase activator activity			ovary(2)|lung(1)|kidney(1)	4						CATAATCTTTCATGTAGCTTT	0.323													7	50					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175066614	175066614	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:175066614C>T	uc001gkl.1	+	8	1763	c.1650C>T	c.(1648-1650)TCC>TCT	p.S550S	TNN_uc010pmx.1_Intron	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	550	Fibronectin type-III 4.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CCACCATCTCCTGGGACCCGG	0.532													5	41					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175323630	175323630	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:175323630C>T	uc001gkp.1	-	16	3360	c.3279G>A	c.(3277-3279)TGG>TGA	p.W1093*	TNR_uc009wwu.1_Nonsense_Mutation_p.W1093*	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1093	Fibronectin type-III 9.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CCAGTCGAATCCAGGTGTCTT	0.552													4	25					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175331899	175331899	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:175331899G>A	uc001gkp.1	-	12	2835	c.2754C>T	c.(2752-2754)TTC>TTT	p.F918F	TNR_uc009wwu.1_Silent_p.F918F	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	918	Fibronectin type-III 7.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TGGTGATGGTGAATTCTGTCA	0.517													11	24					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175362946	175362946	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:175362946G>A	uc001gkp.1	-	4	1407	c.1326C>T	c.(1324-1326)TTC>TTT	p.F442F	TNR_uc009wwu.1_Silent_p.F442F|TNR_uc010pmz.1_3'UTR	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	442	Fibronectin type-III 2.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CCCACCCATCGAAGGAAAATG	0.463													25	143					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175375809	175375809	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:175375809G>A	uc001gkp.1	-	1	123	c.42C>T	c.(40-42)CTC>CTT	p.L14L	TNR_uc009wwu.1_Silent_p.L14L|TNR_uc010pmz.1_Silent_p.L14L	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	14					axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TGATGCCAATGAGCATGTTCT	0.552													5	111					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525921	176525921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:176525921G>A	uc001gkz.2	+	2	1627	c.463G>A	c.(463-465)GAG>AAG	p.E155K	PAPPA2_uc001gky.1_Missense_Mutation_p.E155K|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	155					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						AAGATCCAAGGAGTCTCTAGG	0.542													4	69					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176709263	176709263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:176709263C>T	uc001gkz.2	+	14	5246	c.4082C>T	c.(4081-4083)TCC>TTC	p.S1361F	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1361					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						AGGACATCCTCCCGCATTGGT	0.517													5	3					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176762725	176762725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:176762725C>T	uc001gkz.2	+	20	6214	c.5050C>T	c.(5050-5052)CCC>TCC	p.P1684S	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1684	Sushi 5.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GTGTGTAATCCCCCCCAGTGA	0.468													7	43					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176762734	176762734	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:176762734G>A	uc001gkz.2	+	20	6223	c.5059G>A	c.(5059-5061)GAC>AAC	p.D1687N	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1687	Sushi 5.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCCCCCCAGTGACCCCGTGAT	0.473													7	46					0	0	1	0	0
SEC16B	89866	broad.mit.edu	37	1	177913747	177913747	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:177913747G>A	uc001gli.1	-	15	1920	c.1830C>T	c.(1828-1830)TTC>TTT	p.F610F	SEC16B_uc001glk.1_Silent_p.F287F|SEC16B_uc009wwy.1_Silent_p.F165F|SEC16B_uc001glh.1_Silent_p.F269F|SEC16B_uc009wwz.1_Silent_p.F269F|SEC16B_uc001glj.1_Silent_p.F611F	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	610					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						GACAGTACTCGAAGATTTCCG	0.493													14	144					0	0	1	0	0
RALGPS2	55103	broad.mit.edu	37	1	178855150	178855150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:178855150C>T	uc001glz.2	+	13	1425	c.1087C>T	c.(1087-1089)CCA>TCA	p.P363S	RALGPS2_uc010pnb.1_Missense_Mutation_p.P363S	NM_152663	NP_689876	Q86X27	RGPS2_HUMAN	Ral GEF with PH domain and SH3 binding motif 2	363					small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity|protein binding				0						TGCAACGTTTCCAAATGCAGG	0.363													6	25					0	0	1	0	0
FAM20B	9917	broad.mit.edu	37	1	179023749	179023749	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:179023749C>T	uc001gmc.2	+	4	843	c.550C>T	c.(550-552)CTG>TTG	p.L184L		NM_014864	NP_055679	O75063	XYLK_HUMAN	hypothetical protein LOC9917 precursor	184	Lumenal (Potential).					Golgi membrane|integral to membrane	ATP binding|kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(3)	3						CACAGAGCAGCTGTTGAGCAC	0.448													4	34					0	0	1	0	0
ABL2	27	broad.mit.edu	37	1	179095588	179095589	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:179095588_179095589GG>AA	uc001gmj.3	-	4	897_898	c.610_611CC>TT	c.(610-612)CCT>TTT	p.P204F	ABL2_uc010pnf.1_Missense_Mutation_p.P204F|ABL2_uc010png.1_Missense_Mutation_p.P183F|ABL2_uc010pnh.1_Missense_Mutation_p.P183F|ABL2_uc009wxe.2_Missense_Mutation_p.P183F|ABL2_uc001gmg.3_Missense_Mutation_p.P189F|ABL2_uc001gmi.3_Missense_Mutation_p.P189F|ABL2_uc001gmh.3_Missense_Mutation_p.P168F|ABL2_uc010pne.1_Missense_Mutation_p.P168F|ABL2_uc009wxf.1_Missense_Mutation_p.P189F|ABL2_uc001gmk.2_Missense_Mutation_p.P168F	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	204	SH2.				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	CAGCTGCCCAGGGCTACTCTCA	0.54			T	ETV6	AML								10	56					0	0	1	0	0
ABL2	27	broad.mit.edu	37	1	179095614	179095614	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:179095614G>A	uc001gmj.3	-	4	872	c.585C>T	c.(583-585)TTC>TTT	p.F195F	ABL2_uc010pnf.1_Silent_p.F195F|ABL2_uc010png.1_Silent_p.F174F|ABL2_uc010pnh.1_Silent_p.F174F|ABL2_uc009wxe.2_Silent_p.F174F|ABL2_uc001gmg.3_Silent_p.F180F|ABL2_uc001gmi.3_Silent_p.F180F|ABL2_uc001gmh.3_Silent_p.F159F|ABL2_uc010pne.1_Silent_p.F159F|ABL2_uc009wxf.1_Silent_p.F180F|ABL2_uc001gmk.2_Silent_p.F159F	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	195	SH2.				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	CTCGCACCAGGAAGCTGCCAT	0.537			T	ETV6	AML								11	69					0	0	1	0	0
C1orf125	126859	broad.mit.edu	37	1	179414138	179414138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:179414138G>A	uc001gmo.2	+	16	1724	c.1597G>A	c.(1597-1599)GAT>AAT	p.D533N	C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmn.1_Missense_Mutation_p.D321N|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.D533N	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	533											0						GTTTACTGGGGATGTTCTACT	0.353													6	42					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179562682	179562682	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:179562682G>A	uc001gnf.1	+	3	570	c.320G>A	c.(319-321)GGA>GAA	p.G107E	TDRD5_uc010pnp.1_Missense_Mutation_p.G107E	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	107					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						ATGCATAAGGGAAGACCTAGT	0.458													14	36					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179562801	179562801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:179562801C>T	uc001gnf.1	+	3	689	c.439C>T	c.(439-441)CCT>TCT	p.P147S	TDRD5_uc010pnp.1_Missense_Mutation_p.P147S	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	147	Lotus/OST-HTH 2.				DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GGCGTTATCTCCTGTTCTTCT	0.433													8	87					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179631265	179631265	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:179631265C>T	uc001gnf.1	+	14	2437	c.2187C>T	c.(2185-2187)TGC>TGT	p.C729C	TDRD5_uc010pnp.1_Silent_p.C783C|TDRD5_uc001gnh.1_Silent_p.C284C	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	729					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GAATGCCATGCCTGGAGTCAG	0.393													6	26					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179659832	179659832	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:179659832G>A	uc001gnf.1	+	17	2950	c.2700G>A	c.(2698-2700)GTG>GTA	p.V900V	TDRD5_uc010pnp.1_Silent_p.V954V|TDRD5_uc001gnh.1_Silent_p.V455V	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	900					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						CTTTTCCAGTGGAAAGCTCAC	0.403													5	34					0	0	1	0	0
QSOX1	5768	broad.mit.edu	37	1	180151425	180151425	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:180151425C>T	uc001gnz.2	+	6	798	c.723C>T	c.(721-723)TTC>TTT	p.F241F	QSOX1_uc001gny.2_Silent_p.F241F|QSOX1_uc001goa.2_Silent_p.F241F|QSOX1_uc001gob.1_RNA	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	241					cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						ACCTGCTGTTCCGGAATGGCT	0.607													34	155					0	0	1	0	0
QSOX1	5768	broad.mit.edu	37	1	180153184	180153184	+	Missense_Mutation	SNP	C	T	T	rs146785605	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:180153184C>T	uc001gnz.2	+	7	961	c.886C>T	c.(886-888)CGC>TGC	p.R296C	QSOX1_uc001gny.2_Missense_Mutation_p.R296C|QSOX1_uc001goa.2_Missense_Mutation_p.R296C	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	296					cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						ATTGGCAGATCGGTAAGGCTA	0.542													23	102					0	0	1	0	0
QSOX1	5768	broad.mit.edu	37	1	180163482	180163482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:180163482C>T	uc001gnz.2	+	11	1498	c.1423C>T	c.(1423-1425)CTC>TTC	p.L475F	QSOX1_uc001gny.2_Missense_Mutation_p.L475F|QSOX1_uc001goa.2_Missense_Mutation_p.L475F|QSOX1_uc001goc.2_Missense_Mutation_p.L17F	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	475	ERV/ALR sulfhydryl oxidase.				cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						CGCCGCTGTCCTCTGGCTCTG	0.622													8	76					0	0	1	0	0
KIAA1614	57710	broad.mit.edu	37	1	180885547	180885547	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:180885547C>T	uc001gok.2	+	2	375	c.308C>T	c.(307-309)CCC>CTC	p.P103L		NM_020950	NP_066001	Q5VZ46	K1614_HUMAN	hypothetical protein LOC57710	103										ovary(3)|skin(1)	4						GGAGTGAGTCCCTGCTCTGCT	0.592													25	66					0	0	1	0	0
KIAA1614	57710	broad.mit.edu	37	1	180885828	180885828	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:180885828C>T	uc001gok.2	+	2	656	c.589C>T	c.(589-591)CAT>TAT	p.H197Y		NM_020950	NP_066001	Q5VZ46	K1614_HUMAN	hypothetical protein LOC57710	197										ovary(3)|skin(1)	4						ACTTCCTGACCATGACAGAGG	0.627													7	85					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181480585	181480585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:181480585C>T	uc001gow.2	+	3	616	c.451C>T	c.(451-453)CAT>TAT	p.H151Y	CACNA1E_uc009wxr.2_Missense_Mutation_p.H58Y|CACNA1E_uc009wxs.2_Missense_Mutation_p.H58Y	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	151	I.|Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GTTCATCTTCCATAAGGGCTC	0.478													16	123					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181680091	181680091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:181680091G>A	uc001gow.2	+	8	1222	c.1057G>A	c.(1057-1059)GAA>AAA	p.E353K	CACNA1E_uc009wxs.2_Missense_Mutation_p.E260K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	353	Cytoplasmic (Potential).|I.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TGTCCACAGGGAATTTGCCAA	0.517													9	26					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181680125	181680125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:181680125G>A	uc001gow.2	+	8	1256	c.1091G>A	c.(1090-1092)CGA>CAA	p.R364Q	CACNA1E_uc009wxs.2_Missense_Mutation_p.R271Q	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	364	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GTGGAGAACCGAAGGGCTTTC	0.537													5	50					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181686297	181686297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:181686297G>A	uc001gow.2	+	11	1549	c.1384G>A	c.(1384-1386)GAA>AAA	p.E462K	CACNA1E_uc009wxs.2_Missense_Mutation_p.E369K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	462	Cytoplasmic (Potential).|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCGGCACAAGGAAAGGCTTCT	0.512													9	67					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181727209	181727209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:181727209G>A	uc001gow.2	+	31	4621	c.4456G>A	c.(4456-4458)GCC>ACC	p.A1486T	CACNA1E_uc009wxs.2_Missense_Mutation_p.A1374T|CACNA1E_uc001gox.1_Missense_Mutation_p.A712T|CACNA1E_uc009wxt.2_Missense_Mutation_p.A712T	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1486	Helical; Name=S1 of repeat IV.|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CACCATTATGGCCATGATCGC	0.557													9	29					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181754461	181754461	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:181754461C>T	uc001gow.2	+	42	5751	c.5586C>T	c.(5584-5586)GAC>GAT	p.D1862D	CACNA1E_uc009wxs.2_Silent_p.D1750D|CACNA1E_uc009wxt.2_Silent_p.D1088D	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1862	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TAGCCTCTGACCTGACTGTGG	0.468													4	14					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181767784	181767784	+	Silent	SNP	C	T	T	rs35105143		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:181767784C>T	uc001gow.2	+	47	6792	c.6627C>T	c.(6625-6627)TTC>TTT	p.F2209F	CACNA1E_uc009wxs.2_Silent_p.F2097F|CACNA1E_uc009wxt.2_Silent_p.F1478F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2252	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CGCTCACTTTCGAAGCAGCCG	0.642													7	8					0	0	1	0	0
ZNF648	127665	broad.mit.edu	37	1	182026704	182026704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:182026704C>T	uc001goz.2	-	2	650	c.442G>A	c.(442-444)GGT>AGT	p.G148S		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	148					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CCATCATCACCCGCAGGTAGT	0.562													11	60					0	0	1	0	0
RGS8	85397	broad.mit.edu	37	1	182615970	182615970	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:182615970C>T	uc010pnw.1	-	7	701	c.443G>A	c.(442-444)GGA>GAA	p.G148E	RGS8_uc001gpn.1_Missense_Mutation_p.G148E|RGS8_uc001gpm.1_Missense_Mutation_p.G166E	NM_001102450	NP_001095920	P57771	RGS8_HUMAN	regulator of G-protein signalling 8 isoform 2	148	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)	1						GTGTACTTTTCCTTGGGCTTG	0.498													7	126					0	0	1	0	0
RGS8	85397	broad.mit.edu	37	1	182616020	182616020	+	Silent	SNP	C	T	T	rs147293552		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:182616020C>T	uc010pnw.1	-	7	651	c.393G>A	c.(391-393)ACG>ACA	p.T131T	RGS8_uc001gpn.1_Silent_p.T131T|RGS8_uc001gpm.1_Silent_p.T149T	NM_001102450	NP_001095920	P57771	RGS8_HUMAN	regulator of G-protein signalling 8 isoform 2	131	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)	1						GGTTCTTCCTCGTGGCTTCTC	0.527													9	98					0	0	1	0	0
C1orf14	81626	broad.mit.edu	37	1	182872245	182872245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:182872245C>T	uc001gpu.2	-	9	1924	c.1639G>A	c.(1639-1641)GAA>AAA	p.E547K	C1orf14_uc001gpv.2_Missense_Mutation_p.E428K|C1orf14_uc010pnz.1_Missense_Mutation_p.E405K|C1orf14_uc001gpw.2_Missense_Mutation_p.E267K	NM_030933	NP_112195	Q9BZQ2	SHP1L_HUMAN	chromosome 1 open reading frame 14	619	PbH1 3.										0				Colorectal(1306;1.64e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00267)		TGATGAATTTCATTTCTTTCC	0.333													13	87					0	0	1	0	0
LAMC2	3918	broad.mit.edu	37	1	183195866	183195866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:183195866C>T	uc001gqa.2	+	9	1414	c.1100C>T	c.(1099-1101)TCA>TTA	p.S367L	LAMC2_uc001gpz.3_Missense_Mutation_p.S367L|LAMC2_uc010poa.1_Missense_Mutation_p.S67L	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	367	Laminin IV type A.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						ACCCTGATTTCAGCCCGCCCT	0.502													23	173					0	0	1	0	0
RGL1	23179	broad.mit.edu	37	1	183871708	183871708	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:183871708C>T	uc001gqo.2	+	12	1481	c.1324C>T	c.(1324-1326)CTG>TTG	p.L442L	RGL1_uc010pof.1_Silent_p.L247L|RGL1_uc001gqm.2_Silent_p.L477L|RGL1_uc010pog.1_Silent_p.L440L|RGL1_uc010poh.1_Silent_p.L440L|RGL1_uc010poi.1_Silent_p.L413L	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	442	Ras-GEF.				cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						TTAGGGTGGACTGATAAACTT	0.353													8	19					0	0	1	0	0
RGL1	23179	broad.mit.edu	37	1	183885675	183885675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:183885675C>T	uc001gqo.2	+	16	2001	c.1844C>T	c.(1843-1845)CCG>CTG	p.P615L	RGL1_uc001gqm.2_Missense_Mutation_p.P650L|RGL1_uc010pog.1_Missense_Mutation_p.P613L|RGL1_uc010poh.1_Missense_Mutation_p.P613L|RGL1_uc010poi.1_Missense_Mutation_p.P586L	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	615					cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						TCCTCCCCTCCGTCCTGCAAC	0.507													4	48					0	0	1	0	0
GLT25D2	23127	broad.mit.edu	37	1	183938543	183938543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:183938543G>A	uc001gqr.2	-	5	1064	c.692C>T	c.(691-693)CCC>CTC	p.P231L	GLT25D2_uc010poj.1_Missense_Mutation_p.P231L|GLT25D2_uc001gqs.2_Missense_Mutation_p.P111L	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	231					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						CATGGGGACGGGGAAGCAGCC	0.522													5	54					0	0	1	0	0
FAM129A	116496	broad.mit.edu	37	1	184777334	184777334	+	Silent	SNP	G	A	A	rs149201304	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:184777334G>A	uc001gra.2	-	10	1403	c.1209C>T	c.(1207-1209)TCC>TCT	p.S403S	FAM129A_uc001grb.1_Silent_p.S166S|FAM129A_uc009wyh.1_Silent_p.S231S|FAM129A_uc009wyi.1_Silent_p.S201S	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	403					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						CCATCTTCACGGAATGCAGCG	0.468													6	43					0	0	1	0	0
FAM129A	116496	broad.mit.edu	37	1	184787863	184787863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:184787863C>T	uc001gra.2	-	9	1276	c.1082G>A	c.(1081-1083)GGA>GAA	p.G361E	FAM129A_uc001grb.1_Missense_Mutation_p.G124E|FAM129A_uc009wyh.1_Missense_Mutation_p.G189E|FAM129A_uc009wyi.1_Missense_Mutation_p.G159E	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	361					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						TTCACTGAATCCCGAGCTCAC	0.537													5	106					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	186113349	186113349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:186113349G>A	uc001grq.1	+	90	14198	c.13969G>A	c.(13969-13971)GAA>AAA	p.E4657K	HMCN1_uc001grs.1_Missense_Mutation_p.E226K	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4657	TSP type-1 3.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AACATGCAGCGAAAGTTGTGG	0.488													5	45					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	186158974	186158974	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:186158974C>T	uc001grq.1	+	107	17101	c.16872C>T	c.(16870-16872)TTC>TTT	p.F5624F	HMCN1_uc001grs.1_Silent_p.F1076F	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	5624					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AGACCACATTCATAGTTTATA	0.458													4	12					0	0	1	0	0
PRG4	10216	broad.mit.edu	37	1	186276501	186276501	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:186276501G>A	uc001gru.3	+	7	1701	c.1650G>A	c.(1648-1650)AAG>AAA	p.K550K	PRG4_uc001grt.3_Silent_p.K509K|PRG4_uc009wyl.2_Silent_p.K457K|PRG4_uc009wym.2_Silent_p.K416K|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	550	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|27.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CCACTCCCAAGGAGCCTTCAC	0.642													6	29					0	0	1	0	0
PTGS2	5743	broad.mit.edu	37	1	186645059	186645059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:186645059C>T	uc001gsb.2	-	8	1365	c.1228G>A	c.(1228-1230)GAA>AAA	p.E410K	PTGS2_uc009wyo.2_Missense_Mutation_p.E257K	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	410					cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	GTGAATGATTCAACAAACTGG	0.358													5	34					0	0	1	0	0
PLA2G4A	5321	broad.mit.edu	37	1	186901937	186901937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:186901937G>A	uc001gsc.2	+	8	806	c.601G>A	c.(601-603)GCC>ACC	p.A201T	PLA2G4A_uc010pos.1_Missense_Mutation_p.A141T	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	201	PLA2c.				phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	GGGTTTCCGAGCCATGGTGGG	0.458													3	23					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190067856	190067856	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:190067856C>T	uc001gse.1	-	8	1825	c.1593G>A	c.(1591-1593)AAG>AAA	p.K531K	FAM5C_uc010pot.1_Silent_p.K429K	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	531						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GGAGCATCCGCTTACGCCAGG	0.433													9	89					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190129896	190129896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:190129896C>T	uc001gse.1	-	7	1318	c.1086G>A	c.(1084-1086)ATG>ATA	p.M362I	FAM5C_uc010pot.1_Missense_Mutation_p.M260I	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	362						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AAAGTTGTTTCATGCTGTTCT	0.403													6	15					0	0	1	0	0
CDC73	79577	broad.mit.edu	37	1	193181590	193181590	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:193181590C>T	uc001gtb.2	+	13	1380	c.1137C>T	c.(1135-1137)GAC>GAT	p.D379D		NM_024529	NP_078805	Q6P1J9	CDC73_HUMAN	parafibromin	379			D -> N (in HPT-JT).		cell cycle|histone H2B ubiquitination|histone monoubiquitination|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			parathyroid(46)|ovary(1)|breast(1)|pancreas(1)	49						ATGCAAAAGACCTTCTACAGG	0.328									Hyperparathyroidism_Familial_Isolated|Hyperparathyroidism-Jaw_Tumor_Syndrome				21	123					0	0	1	0	0
KCNT2	343450	broad.mit.edu	37	1	196300324	196300324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:196300324G>A	uc001gtd.1	-	18	2125	c.2065C>T	c.(2065-2067)CAT>TAT	p.H689Y	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.H639Y|KCNT2_uc001gtf.1_Missense_Mutation_p.H689Y|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.H689Y|KCNT2_uc001gth.1_Missense_Mutation_p.H210Y	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	689	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						ACTTTTTCATGAAGGAGATGA	0.299													5	20					0	0	1	0	0
KCNT2	343450	broad.mit.edu	37	1	196458978	196458978	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:196458978C>A	uc001gtd.1	-	3	325	c.265G>T	c.(265-267)GGA>TGA	p.G89*	KCNT2_uc001gte.1_Nonsense_Mutation_p.G89*|KCNT2_uc001gtf.1_Nonsense_Mutation_p.G89*|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Nonsense_Mutation_p.G89*|KCNT2_uc009wyv.1_Nonsense_Mutation_p.G89*	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	89	Extracellular (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						CATTCATTTCCTTGTGAAGGG	0.308													8	52					0.00307968	0.00310507	1	1	0
CFH	3075	broad.mit.edu	37	1	196654241	196654241	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:196654241T>C	uc001gtj.3	+	7	1078	c.838T>C	c.(838-840)TTA>CTA	p.L280L	CFH_uc001gti.3_Silent_p.L280L|CFH_uc009wyw.2_Silent_p.L280L|CFH_uc009wyx.2_Silent_p.L216L	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	280	Sushi 5.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						CTACTCACCTTTAAGGATTAA	0.348													3	10					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390597	197390597	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:197390597C>T	uc001gtz.2	+	6	1774	c.1639C>T	c.(1639-1641)CAG>TAG	p.Q547*	CRB1_uc010poz.1_Nonsense_Mutation_p.Q478*|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Nonsense_Mutation_p.Q435*|CRB1_uc010ppb.1_Nonsense_Mutation_p.Q547*|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Nonsense_Mutation_p.Q28*|CRB1_uc001gub.1_Nonsense_Mutation_p.Q196*	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	547	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CTTATCAATTCAGGTCAATAA	0.458													9	49					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390707	197390707	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:197390707C>T	uc001gtz.2	+	6	1884	c.1749C>T	c.(1747-1749)ATC>ATT	p.I583I	CRB1_uc010poz.1_Silent_p.I514I|CRB1_uc010ppa.1_Intron|CRB1_uc009wza.2_Silent_p.I471I|CRB1_uc010ppb.1_Silent_p.I583I|CRB1_uc010ppc.1_Intron|CRB1_uc010ppd.1_Silent_p.I64I|CRB1_uc001gub.1_Silent_p.I232I	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	583	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TTACCTTAATCGACGACTCCT	0.448													5	50					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390814	197390814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:197390814G>A	uc001gtz.2	+	6	1991	c.1856G>A	c.(1855-1857)GGA>GAA	p.G619E	CRB1_uc010poz.1_Missense_Mutation_p.G550E|CRB1_uc010ppa.1_Intron|CRB1_uc009wza.2_Missense_Mutation_p.G507E|CRB1_uc010ppb.1_Missense_Mutation_p.G619E|CRB1_uc010ppc.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.G100E|CRB1_uc001gub.1_Missense_Mutation_p.G268E	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	619	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TTACCAGTGGGAATGACCAGC	0.418													6	57					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390871	197390871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:197390871C>T	uc001gtz.2	+	6	2048	c.1913C>T	c.(1912-1914)TCG>TTG	p.S638L	CRB1_uc010poz.1_Missense_Mutation_p.S569L|CRB1_uc010ppa.1_Intron|CRB1_uc009wza.2_Missense_Mutation_p.S526L|CRB1_uc010ppb.1_Missense_Mutation_p.S638L|CRB1_uc010ppc.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.S119L|CRB1_uc001gub.1_Missense_Mutation_p.S287L	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	638	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TCCACACCTTCGTTTGTAGGC	0.428													4	63					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390934	197390934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:197390934C>T	uc001gtz.2	+	6	2111	c.1976C>T	c.(1975-1977)TCG>TTG	p.S659L	CRB1_uc010poz.1_Missense_Mutation_p.S590L|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.S547L|CRB1_uc010ppb.1_Missense_Mutation_p.S659L|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.S140L|CRB1_uc001gub.1_Missense_Mutation_p.S308L	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	659	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GAGAACATCTCGTCTGGCTCA	0.448													7	49					0	0	1	0	0
ATP6V1G3	127124	broad.mit.edu	37	1	198509761	198509761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:198509761C>T	uc001gup.2	-	2	126	c.20G>A	c.(19-21)GGG>GAG	p.G7E	ATP6V1G3_uc009wzd.2_Missense_Mutation_p.G7E|ATP6V1G3_uc001guo.2_Missense_Mutation_p.G7E	NM_133262	NP_573569	Q96LB4	VATG3_HUMAN	ATPase, H+ transporting, lysosomal, V1 subunit	7	Potential.				cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase complex	ATPase binding			central_nervous_system(1)	1						CTGGTGGATCCCCTGAGACTG	0.448													4	50					0	0	1	0	0
PTPRC	5788	broad.mit.edu	37	1	198682180	198682180	+	Missense_Mutation	SNP	C	T	T	rs142046206		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:198682180C>T	uc001gur.1	+	12	1444	c.1264C>T	c.(1264-1266)CTC>TTC	p.L422F	PTPRC_uc001gus.1_Missense_Mutation_p.L374F|PTPRC_uc001gut.1_Missense_Mutation_p.L261F|PTPRC_uc009wzf.1_Missense_Mutation_p.L310F|PTPRC_uc010ppg.1_Missense_Mutation_p.L358F	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	422	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						TAATTTTACCCTCTGTTATAT	0.333													6	69					0	0	1	0	0
NR5A2	2494	broad.mit.edu	37	1	200017564	200017564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:200017564C>T	uc001gvb.2	+	5	934	c.728C>T	c.(727-729)TCC>TTC	p.S243F	NR5A2_uc001gvc.2_Missense_Mutation_p.S197F|NR5A2_uc009wzh.2_Missense_Mutation_p.S203F|NR5A2_uc010pph.1_Missense_Mutation_p.S171F	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	243					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					TTTGTAACATCCCCCATTAGC	0.527													12	80					0	0	1	0	0
NR5A2	2494	broad.mit.edu	37	1	200090064	200090064	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:200090064C>T	uc001gvb.2	+	7	1565	c.1359C>T	c.(1357-1359)TTC>TTT	p.F453F	NR5A2_uc001gvc.2_Silent_p.F407F|NR5A2_uc009wzh.2_Silent_p.F413F|NR5A2_uc010pph.1_Silent_p.F381F	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	453					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					GTCTGAAATTCTTGGTGCTCT	0.423													11	50					0	0	1	0	0
ZNF281	23528	broad.mit.edu	37	1	200376289	200376289	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:200376289A>T	uc001gve.2	-	2	2652	c.2545T>A	c.(2545-2547)TTT>ATT	p.F849I	ZNF281_uc001gvf.1_Missense_Mutation_p.F849I|ZNF281_uc001gvg.1_Missense_Mutation_p.F813I	NM_012482	NP_036614	Q9Y2X9	ZN281_HUMAN	zinc finger protein 281	849					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)	2						TTAGTGATAAAGGTCATTGGC	0.428													6	91					0	0	1	0	0
DDX59	83479	broad.mit.edu	37	1	200635639	200635639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:200635639G>A	uc009wzk.2	-	2	473	c.230C>T	c.(229-231)CCC>CTC	p.P77L	DDX59_uc010ppl.1_Missense_Mutation_p.P77L	NM_001031725	NP_001026895	Q5T1V6	DDX59_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	77			P -> T (in a breast cancer sample; somatic mutation).			intracellular	ATP binding|ATP-dependent helicase activity|metal ion binding|RNA binding	p.P77T(1)		ovary(2)|breast(1)|central_nervous_system(1)	4						ACCCTGCTCGGGACTTACTGA	0.547													13	69					0	0	1	0	0
GPR25	2848	broad.mit.edu	37	1	200843103	200843103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:200843103C>T	uc001gvn.1	+	1	938	c.938C>T	c.(937-939)TCA>TTA	p.S313L		NM_005298	NP_005289	O00155	GPR25_HUMAN	G protein-coupled receptor 25	313	Cytoplasmic (Potential).					integral to plasma membrane				ovary(1)	1						CTGGACCGCTCATTCCGAGCC	0.706													7	51					0	0	1	0	0
C1orf106	55765	broad.mit.edu	37	1	200877860	200877860	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:200877860G>A	uc001gvo.2	+	7	862	c.832G>A	c.(832-834)GAA>AAA	p.E278K	C1orf106_uc010ppm.1_Missense_Mutation_p.E193K	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	278										skin(2)|ovary(1)	3						TCCTGCAGAGGAATCCCAAGT	0.607													15	149					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200944007	200944007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:200944007G>A	uc001gvs.1	-	34	4966	c.4649C>T	c.(4648-4650)GCC>GTC	p.A1550V	KIF21B_uc001gvr.1_Missense_Mutation_p.A1537V|KIF21B_uc009wzl.1_Missense_Mutation_p.A1550V|KIF21B_uc010ppn.1_Missense_Mutation_p.A1537V	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1550	WD 6.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GAAGGCCAGGGCGCACACCCA	0.642													25	145					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200950209	200950209	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:200950209C>T	uc001gvs.1	-	29	4175	c.3858G>A	c.(3856-3858)CCG>CCA	p.P1286P	KIF21B_uc001gvr.1_Silent_p.P1273P|KIF21B_uc009wzl.1_Silent_p.P1286P|KIF21B_uc010ppn.1_Silent_p.P1273P	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1286					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CTCCTCCAACCGGGGAGATGA	0.637													9	57					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200968488	200968488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:200968488G>A	uc001gvs.1	-	13	2191	c.1874C>T	c.(1873-1875)CCC>CTC	p.P625L	KIF21B_uc001gvr.1_Missense_Mutation_p.P625L|KIF21B_uc009wzl.1_Missense_Mutation_p.P625L|KIF21B_uc010ppn.1_Missense_Mutation_p.P625L	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	625					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CTTCTCCTCGGGGTCTGAGTC	0.622													14	78					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200968540	200968540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:200968540C>T	uc001gvs.1	-	13	2139	c.1822G>A	c.(1822-1824)GAA>AAA	p.E608K	KIF21B_uc001gvr.1_Missense_Mutation_p.E608K|KIF21B_uc009wzl.1_Missense_Mutation_p.E608K|KIF21B_uc010ppn.1_Missense_Mutation_p.E608K	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	608					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						TCCTCATCTTCATCCTCGCGC	0.642													9	71					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200969712	200969712	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:200969712G>A	uc001gvs.1	-	11	1808	c.1491C>T	c.(1489-1491)GCC>GCT	p.A497A	KIF21B_uc001gvr.1_Silent_p.A497A|KIF21B_uc009wzl.1_Silent_p.A497A|KIF21B_uc010ppn.1_Silent_p.A497A	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	497	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						ACTCGTTCATGGCTTCACTCT	0.682													8	57					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201009498	201009499	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:201009498_201009499GG>AA	uc001gvv.2	-	43	5457_5458	c.5230_5231CC>TT	c.(5230-5232)CCC>TTC	p.P1744F		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1744	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CTCCACCCTGGGGCACTGTTCC	0.55													4	33					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201046156	201046156	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:201046156G>A	uc001gvv.2	-	12	1946	c.1719C>T	c.(1717-1719)TTC>TTT	p.F573F		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	573	II.|Helical; Name=S5 of repeat II; (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CCAGGAGGGCGAAGATGACGA	0.527													4	64					0	0	1	0	0
IGFN1	91156	broad.mit.edu	37	1	201195166	201195166	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:201195166C>T	uc001gwc.2	+	11	2953	c.2181C>T	c.(2179-2181)TAC>TAT	p.Y727Y	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						GCCACGAATACCACTTCAGGG	0.667													5	38					0	0	1	0	0
IGFN1	91156	broad.mit.edu	37	1	201196023	201196023	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:201196023G>A	uc001gwc.2	+	12	3052	c.2280G>A	c.(2278-2280)GTG>GTA	p.V760V	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						GGTTCACAGTGAAGGCTCCGT	0.632													16	125					0	0	1	0	0
TNNT2	7139	broad.mit.edu	37	1	201331106	201331106	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:201331106C>T	uc001gwf.2	-	13	714	c.645G>A	c.(643-645)AAG>AAA	p.K215K	TNNT2_uc009wzn.2_5'Flank|TNNT2_uc009wzo.2_5'Flank|TNNT2_uc009wzp.2_RNA|TNNT2_uc001gwg.2_Silent_p.K205K|TNNT2_uc001gwh.2_Silent_p.K202K|TNNT2_uc001gwi.2_Silent_p.K175K|TNNT2_uc009wzr.2_Silent_p.K146K	NM_000364	NP_000355	P45379	TNNT2_HUMAN	troponin T type 2, cardiac isoform 1	218					ATP catabolic process|muscle filament sliding|negative regulation of ATPase activity|positive regulation of ATPase activity|regulation of heart contraction|response to calcium ion|response to calcium ion|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin binding|tropomyosin binding|troponin C binding|troponin I binding				0						GAATCTTCTTCTTCTTTTCCC	0.577											OREG0014076	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	173					0	0	1	0	0
LAD1	3898	broad.mit.edu	37	1	201355998	201355998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:201355998C>T	uc001gwm.2	-	3	726	c.491G>A	c.(490-492)AGG>AAG	p.R164K	LAD1_uc009wzu.1_Missense_Mutation_p.R186K	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	164						basement membrane	structural molecule activity				0						TTCTGGCTCCCTGCCCACCAA	0.597													10	102					0	0	1	0	0
NAV1	89796	broad.mit.edu	37	1	201750306	201750306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:201750306C>T	uc001gwu.2	+	5	1879	c.1532C>T	c.(1531-1533)TCA>TTA	p.S511L	NAV1_uc001gwv.1_Missense_Mutation_p.S19L|NAV1_uc001gww.1_Missense_Mutation_p.S120L|NAV1_uc001gwx.2_Missense_Mutation_p.S120L|NAV1_uc001gwy.1_5'Flank	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	511					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						TGTGATGATTCATCCAAGGGT	0.552													5	91					0	0	1	0	0
NAV1	89796	broad.mit.edu	37	1	201777982	201777982	+	Missense_Mutation	SNP	C	T	T	rs142836716		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:201777982C>T	uc001gwu.2	+	19	4528	c.4181C>T	c.(4180-4182)CCC>CTC	p.P1394L	NAV1_uc001gwx.2_Missense_Mutation_p.P1003L	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	1397					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						TCCTTCGGCCCCAGTCTTGCA	0.547													9	77					0	0	1	0	0
IPO9	55705	broad.mit.edu	37	1	201835969	201835969	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:201835969C>T	uc001gwz.2	+	15	1787	c.1737C>T	c.(1735-1737)GTC>GTT	p.V579V		NM_018085	NP_060555	Q96P70	IPO9_HUMAN	importin 9	579					protein import into nucleus	cytoplasm|nucleus	histone binding|protein transporter activity			ovary(2)	2						GCTCAGAGGTCCTCAACCTGG	0.522													9	110					0	0	1	0	0
SHISA4	149345	broad.mit.edu	37	1	201860623	201860623	+	Silent	SNP	C	T	T	rs140214802	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:201860623C>T	uc001gxa.2	+	4	565	c.474C>T	c.(472-474)TTC>TTT	p.F158F		NM_198149	NP_937792	Q96DD7	SHSA4_HUMAN	shisa homolog 4 precursor	158	Cytoplasmic (Potential).|Pro-rich.					integral to membrane					0						AGCCTGGCTTCATATACCCAC	0.582													9	104					0	0	1	0	0
LMOD1	25802	broad.mit.edu	37	1	201915304	201915304	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:201915304C>A	uc001gxb.2	-	1	413	c.165G>T	c.(163-165)ACG>ACT	p.T55T	LMOD1_uc010ppu.1_Silent_p.T55T	NM_012134	NP_036266	P29536	LMOD1_HUMAN	leiomodin 1 (smooth muscle)	55					muscle contraction	cytoskeleton|cytosol|membrane fraction	tropomyosin binding			ovary(1)|pancreas(1)|skin(1)	3						ACTGTTTCTCCGTCTGGTTTC	0.572													13	75					4.36969e-10	4.43329e-10	1	1	0
GPR37L1	9283	broad.mit.edu	37	1	202097409	202097409	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:202097409C>A	uc001gxj.2	+	2	1234	c.1171C>A	c.(1171-1173)CGC>AGC	p.R391S		NM_004767	NP_004758	O60883	ETBR2_HUMAN	G-protein coupled receptor 37 like 1 precursor	391	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|central_nervous_system(1)	2						CGAGCTGACCCGCCAGACCCT	0.632													4	85					1	1	1	1	0
LGR6	59352	broad.mit.edu	37	1	202163309	202163309	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:202163309G>A	uc001gxu.2	+	1	192	c.192G>A	c.(190-192)CTG>CTA	p.L64L		NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	64	LRRNT.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity	p.299_300insGRS(1)		large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						CGGGGGACCTGGACCCCCTGA	0.622													7	42					0	0	1	0	0
LGR6	59352	broad.mit.edu	37	1	202287331	202287331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:202287331G>A	uc001gxu.2	+	18	1900	c.1900G>A	c.(1900-1902)GCC>ACC	p.A634T	LGR6_uc001gxv.2_Missense_Mutation_p.A582T|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Missense_Mutation_p.A495T	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	634	Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						TGAGTACGGAGCCCGCTGGGA	0.627													7	29					0	0	1	0	0
LGR6	59352	broad.mit.edu	37	1	202288065	202288065	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:202288065C>T	uc001gxu.2	+	18	2634	c.2634C>T	c.(2632-2634)CTC>CTT	p.L878L	LGR6_uc001gxv.2_Silent_p.L826L|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Silent_p.L739L	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	878	Cytoplasmic (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						ATGTGGATCTCATTCTGGAAG	0.637													6	103					0	0	1	0	0
LGR6	59352	broad.mit.edu	37	1	202288214	202288214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:202288214C>T	uc001gxu.2	+	18	2783	c.2783C>T	c.(2782-2784)CCC>CTC	p.P928L	LGR6_uc001gxv.2_Missense_Mutation_p.P876L|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Missense_Mutation_p.P789L	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	928	Cytoplasmic (Potential).		P -> H (in a colorectal cancer sample; somatic mutation).			integral to membrane|plasma membrane	protein-hormone receptor activity	p.P928H(1)		large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						TTTGGGAACCCCCAACCCTCC	0.637													13	70					0	0	1	0	0
PPP1R12B	4660	broad.mit.edu	37	1	202411596	202411596	+	Silent	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:202411596G>T	uc001gya.1	+	12	1707	c.1563G>T	c.(1561-1563)GTG>GTT	p.V521V	PPP1R12B_uc001gxz.1_Silent_p.V521V	NM_002481	NP_002472	O60237	MYPT2_HUMAN	protein phosphatase 1, regulatory (inhibitor)	521					regulation of muscle contraction|signal transduction	cytoplasm	enzyme activator activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(75;0.166)			TTAATCTAGTGAGGAGTGGCT	0.428													5	52					8.12818e-05	8.21659e-05	1	1	0
SYT2	127833	broad.mit.edu	37	1	202568430	202568430	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:202568430C>T	uc001gye.2	-	8	1162	c.969G>A	c.(967-969)AAG>AAA	p.K323K	SYT2_uc010pqb.1_Silent_p.K323K|SYT2_uc009xaf.2_Silent_p.K153K	NM_001136504	NP_001129976	Q8N9I0	SYT2_HUMAN	synaptotagmin II	323	Phospholipid binding (By similarity).|C2 2.|Cytoplasmic (Potential).				neurotransmitter secretion	cell junction|chromaffin granule membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	protein binding|transporter activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.169)		Botulinum Toxin Type B(DB00042)	TTGTCTTCTTCTTCTTGAGCC	0.552													11	119					0	0	1	0	0
MYBPH	4608	broad.mit.edu	37	1	203143640	203143640	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:203143640G>A	uc001gzh.1	-	3	485	c.426C>T	c.(424-426)CTC>CTT	p.L142L	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	142	Fibronectin type-III 1.				cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		ACACGCGCAGGAGGAACTTGT	0.637													4	45					0	0	1	0	0
CHI3L1	1116	broad.mit.edu	37	1	203148912	203148912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:203148912C>T	uc001gzi.2	-	9	1159	c.988G>A	c.(988-990)GAC>AAC	p.D330N	FMOD_uc010pqi.1_Intron|CHI3L1_uc001gzk.1_Missense_Mutation_p.D66N|CHI3L1_uc001gzj.2_Missense_Mutation_p.D269N|CHI3L1_uc001gzl.3_5'Flank	NM_001276	NP_001267	P36222	CH3L1_HUMAN	chitinase 3-like 1 precursor	330					chitin catabolic process	extracellular space|proteinaceous extracellular matrix	cation binding|chitinase activity|extracellular matrix structural constituent|sugar binding			pancreas(1)	1						CTTTCCTGGTCGTCGTATCCT	0.582													22	104					0	0	1	0	0
FMOD	2331	broad.mit.edu	37	1	203316665	203316665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:203316665G>A	uc001gzr.2	-	2	870	c.734C>T	c.(733-735)GCT>GTT	p.A245V	FMOD_uc010pqi.1_RNA	NM_002023	NP_002014	Q06828	FMOD_HUMAN	fibromodulin precursor	245	LRR 6.				transforming growth factor beta receptor complex assembly	extracellular space|proteinaceous extracellular matrix				ovary(2)|breast(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.171)			CTGCTCAAGAGCTGAGGGCAG	0.582													7	101					0	0	1	0	0
ATP2B4	493	broad.mit.edu	37	1	203668766	203668766	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:203668766C>T	uc001gzw.2	+	4	1454	c.570C>T	c.(568-570)TTC>TTT	p.F190F	ATP2B4_uc001gzv.2_Silent_p.F190F|ATP2B4_uc009xaq.2_Silent_p.F190F	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	190	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			AGCAAAAGTTCTCCATCATCC	0.488													18	127					0	0	1	0	0
ATP2B4	493	broad.mit.edu	37	1	203680017	203680017	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:203680017C>T	uc001gzw.2	+	12	2696	c.1812C>T	c.(1810-1812)ATC>ATT	p.I604I	ATP2B4_uc001gzv.2_Silent_p.I604I|ATP2B4_uc009xaq.2_Silent_p.I604I	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	604	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			GTAATCGAATCCTGGACCGGA	0.498													4	10					0	0	1	0	0
REN	5972	broad.mit.edu	37	1	204125919	204125919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:204125919G>A	uc001haq.2	-	7	748	c.704C>T	c.(703-705)TCC>TTC	p.S235F		NM_000537	NP_000528	P00797	RENI_HUMAN	renin preproprotein	235					angiotensin maturation|regulation of MAPKKK cascade	extracellular space|membrane	aspartic-type endopeptidase activity			skin(3)|central_nervous_system(1)	4	all_cancers(21;0.00965)|Breast(84;0.116)|all_epithelial(62;0.157)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)		Aliskiren(DB01258)|Remikiren(DB00212)	CAGCGATTGGGAATTCCTAAA	0.527													6	72					0	0	1	0	0
REN	5972	broad.mit.edu	37	1	204128682	204128682	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:204128682C>T	uc001haq.2	-	5	578	c.534G>A	c.(532-534)ACG>ACA	p.T178T		NM_000537	NP_000528	P00797	RENI_HUMAN	renin preproprotein	178					angiotensin maturation|regulation of MAPKKK cascade	extracellular space|membrane	aspartic-type endopeptidase activity			skin(3)|central_nervous_system(1)	4	all_cancers(21;0.00965)|Breast(84;0.116)|all_epithelial(62;0.157)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)		Aliskiren(DB01258)|Remikiren(DB00212)	CGGGCATCTCCGTGACCTCTC	0.577													8	50					0	0	1	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204426916	204426916	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:204426916G>A	uc001haw.2	-	10	2132	c.1653C>T	c.(1651-1653)ATC>ATT	p.I551I	PIK3C2B_uc010pqv.1_Silent_p.I551I|PIK3C2B_uc001hax.1_Silent_p.I551I|PIK3C2B_uc009xbd.1_RNA	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	551					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			GAGCACTGGTGATCTCAGGGG	0.622													4	28					0	0	1	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204438353	204438353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:204438353G>A	uc001haw.2	-	3	1057	c.578C>T	c.(577-579)TCT>TTT	p.S193F	PIK3C2B_uc010pqv.1_Missense_Mutation_p.S193F|PIK3C2B_uc001hax.1_Missense_Mutation_p.S193F|PIK3C2B_uc009xbd.1_RNA	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	193	Interaction with GRB2.				cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			TTCGACCAAAGAGAAAGTGTT	0.592													49	200					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204948525	204948525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:204948525C>T	uc001hbj.2	+	19	2342	c.2014C>T	c.(2014-2016)CCT>TCT	p.P672S	NFASC_uc010pra.1_Missense_Mutation_p.P668S|NFASC_uc001hbi.2_Missense_Mutation_p.P668S|NFASC_uc010prb.1_Missense_Mutation_p.P683S|NFASC_uc010prc.1_Missense_Mutation_p.P239S|NFASC_uc001hbk.1_Missense_Mutation_p.P478S|NFASC_uc001hbl.1_5'Flank	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	672	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CCAGTTCCAACCTGGGGTCTG	0.517													5	87					0	0	1	0	0
TMEM81	388730	broad.mit.edu	37	1	205052974	205052974	+	Missense_Mutation	SNP	G	A	A	rs147380601		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:205052974G>A	uc001hbt.2	-	1	615	c.475C>T	c.(475-477)CGC>TGC	p.R159C		NM_203376	NP_976310	Q6P7N7	TMM81_HUMAN	transmembrane protein 81 precursor	159	Ig-like.|Extracellular (Potential).					integral to membrane					0	all_cancers(21;0.144)|Breast(84;0.0437)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			ACATCACAGCGATATGTCCCA	0.448													18	43					0	0	1	0	0
RBBP5	5929	broad.mit.edu	37	1	205065952	205065952	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:205065952G>A	uc001hbu.1	-	12	1384	c.1254C>T	c.(1252-1254)CCC>CCT	p.P418P	RBBP5_uc010prd.1_Silent_p.P453P|RBBP5_uc001hbv.1_Silent_p.P418P|RBBP5_uc010pre.1_Silent_p.P285P	NM_005057	NP_005048	Q15291	RBBP5_HUMAN	retinoblastoma binding protein 5	418					histone H3-K4 methylation|regulation of transcription, DNA-dependent|response to estrogen stimulus|transcription, DNA-dependent	MLL1 complex|Set1C/COMPASS complex	methylated histone residue binding|transcription regulatory region DNA binding			lung(1)	1	Breast(84;0.0505)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			CATCCGGTGGGGGGCCGTAAG	0.502													10	123					0	0	1	0	0
DSTYK	25778	broad.mit.edu	37	1	205126506	205126507	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:205126506_205126507CA>AG	uc001hbw.2	-	10	2310_2311	c.2246_2247TG>CT	c.(2245-2247)CTG>CCT	p.L749P	DSTYK_uc001hbx.2_Missense_Mutation_p.L749P	NM_015375	NP_056190	Q6XUX3	DUSTY_HUMAN	receptor interacting protein kinase 5 isoform 1	749	Protein kinase.					cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(1)	1						TCTCCAGGGTCAGCCCAGCCTT	0.47													5	25					0	0	1	0	0
CDK18	5129	broad.mit.edu	37	1	205495302	205495302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:205495302G>A	uc001hcr.2	+	6	875	c.656G>A	c.(655-657)CGA>CAA	p.R219Q	CDK18_uc010pri.1_Silent_p.P209P|CDK18_uc001hcp.2_Missense_Mutation_p.R189Q|CDK18_uc001hcq.2_Missense_Mutation_p.R189Q|CDK18_uc010prj.1_Missense_Mutation_p.R100Q|CDK18_uc001hcs.2_Missense_Mutation_p.R100Q|CDK18_uc009xbm.1_Missense_Mutation_p.R100Q	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	187	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						ACTGCCATCCGAGAGGGTACA	0.627													5	22					0	0	1	0	0
MFSD4	148808	broad.mit.edu	37	1	205549803	205549803	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:205549803C>T	uc001hcv.3	+	3	530	c.444C>T	c.(442-444)TTC>TTT	p.F148F	MFSD4_uc010prk.1_Intron|MFSD4_uc010prl.1_RNA|MFSD4_uc010prm.1_Silent_p.F93F	NM_181644	NP_857595	Q8N468	MFSD4_HUMAN	major facilitator superfamily domain containing	148	Helical; (Potential).				transmembrane transport	integral to membrane				skin(2)|central_nervous_system(1)	3	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			TCCATTTCTTCGTGGGCTTTG	0.637													39	127					0	0	1	0	0
SLC45A3	85414	broad.mit.edu	37	1	205631986	205631987	+	Missense_Mutation	DNP	GG	AA	AA	rs146644393	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:205631986_205631987GG>AA	uc001hda.1	-	3	1271_1272	c.932_933CC>TT	c.(931-933)ACC>ATT	p.T311I	SLC45A3_uc010prn.1_5'Flank|SLC45A3_uc010pro.1_Missense_Mutation_p.T145I|SLC45A3_uc010prp.1_Intron|ELK4_uc010prq.1_Intron	NM_033102	NP_149093	Q96JT2	S45A3_HUMAN	prostein	311					transmembrane transport	integral to membrane			SLC45A3/BRAF(2)	ovary(2)|prostate(2)	4	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			TCCGGGCCTCGGTGCCCGGCTC	0.639			T	ETV1|ETV5|ELK4|ERG	prostate 								11	66					0	0	1	0	0
PM20D1	148811	broad.mit.edu	37	1	205814602	205814602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:205814602C>T	uc001hdj.2	-	3	385	c.340G>A	c.(340-342)GAC>AAC	p.D114N	PM20D1_uc009xbr.2_RNA	NM_152491	NP_689704	Q6GTS8	P20D1_HUMAN	peptidase M20 domain containing 1 precursor	114						extracellular region	metal ion binding|peptidase activity			skin(1)	1	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0252)			AAGCTGGGGTCCGAGCCTTGG	0.552													7	83					0	0	1	0	0
SLC26A9	115019	broad.mit.edu	37	1	205892484	205892484	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:205892484G>A	uc001hdq.2	-	15	1752	c.1638C>T	c.(1636-1638)TTC>TTT	p.F546F	SLC26A9_uc001hdo.2_Silent_p.F214F|SLC26A9_uc001hdp.2_Silent_p.F546F	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	546	STAS.					integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			CCTTTTGCCTGAAGATCTCTG	0.552													14	109					0	0	1	0	0
SLC26A9	115019	broad.mit.edu	37	1	205901911	205901911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:205901911G>A	uc001hdq.2	-	4	409	c.295C>T	c.(295-297)CCT>TCT	p.P99S	SLC26A9_uc001hdp.2_Missense_Mutation_p.P99S	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	99	Helical; (Potential).					integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			TTGACTGCAGGAAGGTTGGCC	0.572													7	39					0	0	1	0	0
C1orf186	440712	broad.mit.edu	37	1	206239489	206239489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:206239489C>T	uc001hdt.1	-	6	1048	c.409G>A	c.(409-411)GAA>AAA	p.E137K		NM_001007544	NP_001007545	Q6ZWK4	CA186_HUMAN	hypothetical protein LOC440712	137						integral to membrane					0			BRCA - Breast invasive adenocarcinoma(75;0.0754)			TCTGTGATTTCCTTTATGTTC	0.438													11	32					0	0	1	0	0
C1orf186	440712	broad.mit.edu	37	1	206240150	206240150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:206240150G>A	uc001hdt.1	-	5	941	c.302C>T	c.(301-303)TCG>TTG	p.S101L		NM_001007544	NP_001007545	Q6ZWK4	CA186_HUMAN	hypothetical protein LOC440712	101						integral to membrane					0			BRCA - Breast invasive adenocarcinoma(75;0.0754)			GGCAGGAGGCGAACTGCAGGA	0.512													6	58					0	0	1	0	0
IKBKE	9641	broad.mit.edu	37	1	206664990	206664990	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:206664990C>T	uc001hdz.1	+	18	2111	c.1743C>T	c.(1741-1743)TTC>TTT	p.F581F	IKBKE_uc009xbv.1_Silent_p.F581F|IKBKE_uc001hea.1_Silent_p.F496F	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	581					DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					GGGTGAATTTCAGTCATTTAG	0.527													10	50					0	0	1	0	0
LGTN	1939	broad.mit.edu	37	1	206772821	206772821	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:206772821G>A	uc001heh.2	-	10	1407	c.1198C>T	c.(1198-1200)CAC>TAC	p.H400Y	LGTN_uc009xbw.2_Missense_Mutation_p.H276Y	NM_006893	NP_008824	P41214	EIF2D_HUMAN	ligatin	400					intracellular protein transport	cytoplasm	protein binding|receptor activity|translation initiation factor activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			ACTCACTTGTGGCCAGACTCC	0.532													10	67					0	0	1	0	0
PIGR	5284	broad.mit.edu	37	1	207105095	207105095	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:207105095C>T	uc001hez.2	-	9	2245	c.2061G>A	c.(2059-2061)GAG>GAA	p.E687E	PIGR_uc009xbz.2_Silent_p.E687E	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	687	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CCCTGGAGTTCTCGAAGTCTG	0.517													9	118					0	0	1	0	0
FCAMR	83953	broad.mit.edu	37	1	207133126	207133126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:207133126C>T	uc001hfa.3	-	7	1971	c.1471G>A	c.(1471-1473)GAA>AAA	p.E491K	FCAMR_uc001hfb.2_Missense_Mutation_p.M223I|FCAMR_uc009xca.1_Missense_Mutation_p.M223I|FCAMR_uc001hfc.2_Missense_Mutation_p.E466K	NM_001122980	NP_001116452	Q8WWV6	FCAMR_HUMAN	Fc receptor, IgA, IgM, high affinity isoform 2	446	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						GAGCTGCTTTCATCTTCTGGA	0.388													14	88					0	0	1	0	0
C1orf116	79098	broad.mit.edu	37	1	207196120	207196120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:207196120G>A	uc001hfd.2	-	4	1248	c.989C>T	c.(988-990)CCT>CTT	p.P330L	C1orf116_uc009xcb.1_Missense_Mutation_p.P84L	NM_023938	NP_076427	Q9BW04	SARG_HUMAN	specifically androgen-regulated protein isoform	330						cytoplasm|plasma membrane	receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Prostate(682;0.19)					AGAATCTCCAGGGGCAGCCTC	0.557													18	34					0	0	1	0	0
CD55	1604	broad.mit.edu	37	1	207510695	207510695	+	Missense_Mutation	SNP	C	T	T	rs12135160		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:207510695C>T	uc001hfq.3	+	8	1295	c.1001C>T	c.(1000-1002)TCC>TTC	p.S334F	CD55_uc001hfp.3_Missense_Mutation_p.S334F|CD55_uc001hfr.3_Missense_Mutation_p.S334F|CD55_uc010psf.1_RNA|CD55_uc009xcf.2_Missense_Mutation_p.S270F|CD55_uc009xce.2_Missense_Mutation_p.S334F|CD55_uc009xcg.2_Missense_Mutation_p.S76F	NM_000574	NP_000565	P08174	DAF_HUMAN	decay accelerating factor for complement isoform	334	Ser/Thr-rich.				complement activation, classical pathway|elevation of cytosolic calcium ion concentration|innate immune response|respiratory burst	anchored to membrane|extracellular region|integral to plasma membrane|membrane raft|soluble fraction	receptor activity			ovary(1)	1					Chloramphenicol(DB00446)	ACACCTGTTTCCAGGACAACC	0.423													4	29					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207648364	207648364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:207648364G>A	uc001hfw.2	+	13	2436	c.2342G>A	c.(2341-2343)CGA>CAA	p.R781Q	CR2_uc001hfv.2_Missense_Mutation_p.R840Q|CR2_uc009xch.2_Missense_Mutation_p.R781Q	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	781	Sushi 12.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						CAGTGCTTACGATCTCCTCCT	0.453													5	11					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207753667	207753667	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:207753667C>T	uc001hfy.2	+	22	3809	c.3669C>T	c.(3667-3669)TTC>TTT	p.F1223F	CR1_uc009xcl.1_Silent_p.F773F|CR1_uc001hfx.2_Silent_p.F1673F	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1223	Extracellular (Potential).|Sushi 19.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						AGGAAGTGTTCTACAGCTGTG	0.582													12	26					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207758215	207758215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:207758215C>T	uc001hfy.2	+	25	4314	c.4174C>T	c.(4174-4176)CGT>TGT	p.R1392C	CR1_uc009xcl.1_Missense_Mutation_p.R942C|CR1_uc001hfx.2_Missense_Mutation_p.R1842C	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1392	Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						ACTTTCTGTTCGTGCTGGTCA	0.488													4	20					0	0	1	0	0
CR1L	1379	broad.mit.edu	37	1	207867698	207867698	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:207867698G>A	uc001hga.3	+	5	585	c.464G>A	c.(463-465)AGA>AAA	p.R155K	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	155	Sushi 2.					cytoplasm|extracellular region|membrane					0						CCTTTCCCAGGAATTATTTGT	0.383													3	14					0	0	1	0	0
PLXNA2	5362	broad.mit.edu	37	1	208215514	208215514	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:208215514G>A	uc001hgz.2	-	22	4973	c.4215C>T	c.(4213-4215)CTC>CTT	p.L1405L		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	1405	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		GCAGCTGCTTGAGGACATCAG	0.612													6	53					0	0	1	0	0
PLXNA2	5362	broad.mit.edu	37	1	208390428	208390428	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:208390428G>A	uc001hgz.2	-	2	1598	c.840C>T	c.(838-840)ATC>ATT	p.I280I	PLXNA2_uc001hha.3_Silent_p.I334I	NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	280	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		AGAGCCGCACGATGCGTGAGG	0.612													27	63					0	0	1	0	0
PLXNA2	5362	broad.mit.edu	37	1	208391132	208391132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:208391132G>A	uc001hgz.2	-	2	894	c.136C>T	c.(136-138)CGT>TGT	p.R46C	PLXNA2_uc001hha.3_Missense_Mutation_p.R100C	NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	46	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		GTCCAGTCACGATTCTCAGAG	0.617													13	98					0	0	1	0	0
CAMK1G	57172	broad.mit.edu	37	1	209768397	209768397	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:209768397C>T	uc001hhd.2	+	2	171	c.69C>T	c.(67-69)TTC>TTT	p.F23F	CAMK1G_uc001hhf.3_Silent_p.F23F|CAMK1G_uc001hhe.2_Silent_p.F23F	NM_020439	NP_065172	Q96NX5	KCC1G_HUMAN	calcium/calmodulin-dependent protein kinase IG	23	Protein kinase.					Golgi membrane|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0475)		GGAAAACCTTCATTTTTATGG	0.522													5	61					0	0	1	0	0
LAMB3	3914	broad.mit.edu	37	1	209801435	209801435	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:209801435G>A	uc001hhg.2	-	10	1623	c.1233C>T	c.(1231-1233)GAC>GAT	p.D411D	LAMB3_uc009xco.2_Silent_p.D411D|LAMB3_uc001hhh.2_Silent_p.D411D|LAMB3_uc010psl.1_RNA	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	411	Laminin EGF-like 3.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		GCTTGCATAGGTCACAGCGCT	0.657											OREG0014217	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	12					0	0	1	0	0
HSD11B1	3290	broad.mit.edu	37	1	209879272	209879272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:209879272G>A	uc001hhj.2	+	3	312	c.205G>A	c.(205-207)GAA>AAA	p.E69K	HSD11B1_uc001hhk.2_Missense_Mutation_p.E69K	NM_181755	NP_861420	P28845	DHI1_HUMAN	11-beta-hydroxysteroid dehydrogenase 1	69	Lumenal (Potential).				glucocorticoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	11-beta-hydroxysteroid dehydrogenase (NADP+) activity|11-beta-hydroxysteroid dehydrogenase|binding			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;1.04e-55)|Epithelial(68;1.57e-52)|all cancers(67;1.83e-46)|Colorectal(1306;0.115)	NADH(DB00157)	GAGGTCAAAAGAAACTCTACA	0.478													5	21					0	0	1	0	0
IRF6	3664	broad.mit.edu	37	1	209964128	209964129	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:209964128_209964129GA>AC	uc001hhq.1	-	7	1034_1035	c.771_772TC>GT	c.(769-774)GGTCCC>GGGTCC	p.P258S	IRF6_uc010psm.1_Missense_Mutation_p.P163S|IRF6_uc009xct.1_Missense_Mutation_p.P258S	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	258					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		TCAGGCATGGGACCCAGGTCCC	0.564										HNSCC(57;0.16)			8	44					0	0	1	0	0
HHAT	55733	broad.mit.edu	37	1	210577943	210577943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:210577943C>T	uc009xcx.2	+	6	770	c.604C>T	c.(604-606)CCC>TCC	p.P202S	HHAT_uc010psq.1_Intron|HHAT_uc001hhz.3_Missense_Mutation_p.P202S|HHAT_uc010psr.1_Missense_Mutation_p.P203S|HHAT_uc010pss.1_Missense_Mutation_p.P157S|HHAT_uc009xcy.2_Missense_Mutation_p.P137S|HHAT_uc010pst.1_Missense_Mutation_p.P139S|HHAT_uc010psu.1_Missense_Mutation_p.P137S	NM_001122834	NP_001116306	Q5VTY9	HHAT_HUMAN	hedgehog acyltransferase	202	Helical; (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0136)|all cancers(67;0.161)|KIRC - Kidney renal clear cell carcinoma(1967;0.215)		CTACTCCTTTCCCTGGATGCT	0.562													8	54					0	0	1	0	0
HHAT	55733	broad.mit.edu	37	1	210796883	210796883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:210796883C>T	uc009xcx.2	+	11	1425	c.1259C>T	c.(1258-1260)TCC>TTC	p.S420F	HHAT_uc010psq.1_Missense_Mutation_p.S283F|HHAT_uc001hhz.3_Missense_Mutation_p.S420F|HHAT_uc010psr.1_Missense_Mutation_p.S421F|HHAT_uc010pss.1_Missense_Mutation_p.S375F|HHAT_uc009xcy.2_Missense_Mutation_p.S355F|HHAT_uc010pst.1_Missense_Mutation_p.S357F|HHAT_uc010psu.1_Missense_Mutation_p.S355F|HHAT_uc001hia.3_Missense_Mutation_p.S110F	NM_001122834	NP_001116306	Q5VTY9	HHAT_HUMAN	hedgehog acyltransferase	420					multicellular organismal development	endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0136)|all cancers(67;0.161)|KIRC - Kidney renal clear cell carcinoma(1967;0.215)		CGATACTTCTCCCCACAAGCT	0.527													9	197					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	211381210	211381210	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:211381210G>A	uc001hid.2	+	1	822	c.630G>A	c.(628-630)AAG>AAA	p.K210K						SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;																		CAGCCACCAAGAAGCAGCAGC	0.582													3	7					0	0	1	0	0
RCOR3	55758	broad.mit.edu	37	1	211451573	211451573	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:211451573C>T	uc001hig.2	+	5	626	c.457C>T	c.(457-459)CAG>TAG	p.Q153*	RCOR3_uc010psv.1_RNA|RCOR3_uc001hie.2_Nonsense_Mutation_p.Q211*|RCOR3_uc010psw.1_Nonsense_Mutation_p.Q211*|RCOR3_uc001hif.2_Nonsense_Mutation_p.Q211*	NM_018254	NP_060724	Q9P2K3	RCOR3_HUMAN	REST corepressor 3 isoform d	153					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.00961)|all cancers(67;0.0999)|Epithelial(68;0.171)		TAGACATAATCAGGGTGACAG	0.378													16	71					0	0	1	0	0
LPGAT1	9926	broad.mit.edu	37	1	211952301	211952301	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:211952301G>A	uc001hiu.2	-	6	1626	c.813C>T	c.(811-813)ATC>ATT	p.I271I	LPGAT1_uc001hiv.2_Silent_p.I271I	NM_014873	NP_055688	Q92604	LGAT1_HUMAN	lysophosphatidylglycerol acyltransferase 1	271					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.00773)|all cancers(67;0.0765)|Epithelial(68;0.114)		TGTATCCAAGGATCCAGGTTT	0.363													29	104					0	0	1	0	0
DTL	51514	broad.mit.edu	37	1	212273637	212273637	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:212273637G>A	uc009xdc.2	+	14	1619	c.1305G>A	c.(1303-1305)AGG>AGA	p.R435R	DTL_uc010ptb.1_Silent_p.R393R|DTL_uc001hiz.3_Silent_p.R164R	NM_016448	NP_057532	Q9NZJ0	DTL_HUMAN	denticleless homolog	435					DNA replication|G2/M transition DNA damage checkpoint|protein monoubiquitination|protein polyubiquitination|response to UV|translesion synthesis|ubiquitin-dependent protein catabolic process	centrosome|Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|nuclear membrane	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00796)|all cancers(67;0.0385)|Epithelial(68;0.102)		AAGCCCCCAGGGCAAAGTGCA	0.493													5	32					0	0	1	0	0
FAM71A	149647	broad.mit.edu	37	1	212799454	212799454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:212799454G>A	uc001hjk.2	+	1	1639	c.1235G>A	c.(1234-1236)CGA>CAA	p.R412Q	uc010pth.1_RNA	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	412										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		GGAAGGGAGCGAACCCAGGCC	0.622													17	37					0	0	1	0	0
FLVCR1	28982	broad.mit.edu	37	1	213046070	213046070	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:213046070C>T	uc001hjt.2	+	3	1132	c.934C>T	c.(934-936)CAA>TAA	p.Q312*		NM_014053	NP_054772	Q9Y5Y0	FLVC1_HUMAN	feline leukemia virus subgroup C cellular	312					cell death|cellular iron ion homeostasis|heme export|transmembrane transport	integral to plasma membrane	heme transporter activity|protein binding|receptor activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.00733)|all cancers(67;0.013)|GBM - Glioblastoma multiforme(131;0.0845)|Epithelial(68;0.11)		AGCAGCTCTTCAAGACAGTCC	0.353													5	25					0	0	1	0	0
PROX1	5629	broad.mit.edu	37	1	214209112	214209112	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:214209112C>T	uc001hkh.2	+	5	2421	c.2149C>T	c.(2149-2151)CTG>TTG	p.L717L		NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	717	Prospero-like.				aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		CATCTGCAAGCTGGATAGTGA	0.418													12	36					0	0	1	0	0
PTPN14	5784	broad.mit.edu	37	1	214638071	214638071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:214638071G>A	uc001hkk.1	-	2	347	c.76C>T	c.(76-78)CGC>TGC	p.R26C	PTPN14_uc010pty.1_Intron	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	26	FERM.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		TCCAGCAGGCGAATCCGTGTG	0.602													9	78					0	0	1	0	0
KCNK2	3776	broad.mit.edu	37	1	215259970	215259970	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:215259970C>T	uc001hkq.2	+	2	475	c.306C>T	c.(304-306)TTC>TTT	p.F102F	KCNK2_uc001hko.2_Silent_p.F98F|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_RNA|KCNK2_uc010pua.1_RNA|KCNK2_uc001hkr.3_Silent_p.F87F	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	102							outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	AGCAAACATTCATATCCCAAC	0.463													8	77					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215848395	215848395	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:215848395G>A	uc001hku.1	-	63	13245	c.12858C>T	c.(12856-12858)ATC>ATT	p.I4286I		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4286	Fibronectin type-III 28.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GTTCTGGTGGGATCCAGGAAA	0.343										HNSCC(13;0.011)			4	9					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215901416	215901416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:215901416C>T	uc001hku.1	-	61	12409	c.12022G>A	c.(12022-12024)GAT>AAT	p.D4008N		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4008	Fibronectin type-III 25.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AATGTAGGATCGTCGGGTCTC	0.453										HNSCC(13;0.011)			7	76					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216062053	216062053	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:216062053G>A	uc001hku.1	-	41	8325	c.7938C>T	c.(7936-7938)CCC>CCT	p.P2646P		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2646	Extracellular (Potential).|Fibronectin type-III 13.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GGTGGGTAGGGGGTTGCCAAG	0.502										HNSCC(13;0.011)			5	43					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216373131	216373131	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:216373131C>A	uc001hku.1	-	17	4036	c.3649G>T	c.(3649-3651)GAT>TAT	p.D1217Y	USH2A_uc001hkv.2_Missense_Mutation_p.D1217Y	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1217	Extracellular (Potential).|Fibronectin type-III 2.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACAGAAAAATCGTACTTGGCA	0.517										HNSCC(13;0.011)			3	32					1	1	1	1	0
USH2A	7399	broad.mit.edu	37	1	216420104	216420104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:216420104G>A	uc001hku.1	-	13	3019	c.2632C>T	c.(2632-2634)CGC>TGC	p.R878C	USH2A_uc001hkv.2_Missense_Mutation_p.R878C	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	878	Laminin EGF-like 7.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGATTACAGCGAAGACCTGTT	0.448										HNSCC(13;0.011)			14	46					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216462752	216462752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:216462752C>T	uc001hku.1	-	11	2228	c.1841G>A	c.(1840-1842)GGA>GAA	p.G614E	USH2A_uc001hkv.2_Missense_Mutation_p.G614E	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	614	Laminin EGF-like 2.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACAGTTCCTTCCTGCATCAGG	0.393										HNSCC(13;0.011)			8	42					0	0	1	0	0
ESRRG	2104	broad.mit.edu	37	1	216680389	216680389	+	Silent	SNP	G	A	A	rs111905976		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:216680389G>A	uc001hkw.1	-	7	1435	c.1269C>T	c.(1267-1269)CTC>CTT	p.L423L	ESRRG_uc001hky.1_Silent_p.L400L|ESRRG_uc009xdp.1_Silent_p.L400L|ESRRG_uc001hkz.1_Silent_p.L361L|ESRRG_uc010puc.1_Silent_p.L400L|ESRRG_uc001hla.1_Silent_p.L400L|ESRRG_uc001hlb.1_Silent_p.L400L|ESRRG_uc010pud.1_Silent_p.L231L|ESRRG_uc001hlc.1_Silent_p.L400L|ESRRG_uc001hld.1_Silent_p.L400L|ESRRG_uc001hkx.1_Silent_p.L435L|ESRRG_uc009xdo.1_Silent_p.L400L	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	423					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	TCTGCCTCAGGAGTGGCAGTG	0.498													8	33					0	0	1	0	0
GPATCH2	55105	broad.mit.edu	37	1	217688185	217688185	+	Missense_Mutation	SNP	G	A	A	rs34758184		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:217688185G>A	uc001hlf.1	-	6	1241	c.1145C>T	c.(1144-1146)TCC>TTC	p.S382F		NM_018040	NP_060510	Q9NW75	GPTC2_HUMAN	G patch domain containing 2	382						intracellular	nucleic acid binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0397)|all cancers(67;0.0744)|GBM - Glioblastoma multiforme(131;0.0872)		AGAATCCGGGGAAAAATGAAC	0.358													4	16					0	0	1	0	0
RAB3GAP2	25782	broad.mit.edu	37	1	220340695	220340695	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:220340695G>A	uc010puk.1	-	26	3191	c.3027C>T	c.(3025-3027)CTC>CTT	p.L1009L	RAB3GAP2_uc001hmf.2_RNA|RAB3GAP2_uc001hmg.2_Silent_p.L589L|RAB3GAP2_uc001hmh.2_5'Flank	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic	1009					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		GCAAGACATCGAGCTCAAGGC	0.408													4	26					0	0	1	0	0
MARK1	4139	broad.mit.edu	37	1	220789325	220789325	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:220789325C>T	uc001hmn.3	+	7	1137	c.540C>T	c.(538-540)CAC>CAT	p.H180H	MARK1_uc009xdw.2_Silent_p.H180H|MARK1_uc010pun.1_Silent_p.H180H|MARK1_uc001hmm.3_Silent_p.H158H	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	180	Protein kinase.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		ACATTGTTCACCGTGATCTTA	0.214													5	35					0	0	1	0	0
MOSC1	64757	broad.mit.edu	37	1	220986660	220986660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:220986660G>A	uc001hms.2	+	7	1162	c.914G>A	c.(913-915)CGA>CAA	p.R305Q	MOSC1_uc001hmt.2_Missense_Mutation_p.R322Q	NM_022746	NP_073583	Q5VT66	MOSC1_HUMAN	MOCO sulphurase C-terminal domain containing 1	305	MOSC.						molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.0358)		CCTTCAGAACGAAAGTTATAT	0.493													8	171					0	0	1	0	0
DUSP10	11221	broad.mit.edu	37	1	221913020	221913020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:221913020G>A	uc001hmy.1	-	2	249	c.67C>T	c.(67-69)CTC>TTC	p.L23F	DUSP10_uc001hmx.1_5'Flank|DUSP10_uc001hmz.1_Intron	NM_007207	NP_009138	Q9Y6W6	DUS10_HUMAN	dual specificity phosphatase 10 isoform a	23					inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of JUN kinase activity|negative regulation of stress-activated MAPK cascade	Golgi apparatus|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)|lung(1)	2				GBM - Glioblastoma multiforme(131;0.0103)		CAAAGGTTGAGATCCTGAGGT	0.537													17	109					0	0	1	0	0
HHIPL2	79802	broad.mit.edu	37	1	222717015	222717015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:222717015G>A	uc001hnh.1	-	2	896	c.838C>T	c.(838-840)CAC>TAC	p.H280Y		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	280					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		AATTTGGGGTGAAAAGCCAAC	0.488													76	467					0	0	1	0	0
MIA3	375056	broad.mit.edu	37	1	222794578	222794578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:222794578C>T	uc001hnl.2	+	2	220	c.211C>T	c.(211-213)CCT>TCT	p.P71S		NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	71	SH3.|Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		AAAAGGTGATCCTGTATATGT	0.363													19	292					0	0	1	0	0
MIA3	375056	broad.mit.edu	37	1	222802528	222802528	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:222802528C>T	uc001hnl.2	+	4	1975	c.1966C>T	c.(1966-1968)CCC>TCC	p.P656S	MIA3_uc009xea.1_Missense_Mutation_p.P492S	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	656	Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		AAGAAATCTTCCCTGGCAACA	0.463													32	241					0	0	1	0	0
DISP1	84976	broad.mit.edu	37	1	223177295	223177295	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:223177295C>T	uc001hnu.1	+	8	2703	c.2556C>T	c.(2554-2556)TTC>TTT	p.F852F		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	852					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		CCAGCTGCTTCATTGAGACAT	0.488													33	434					0	0	1	0	0
DISP1	84976	broad.mit.edu	37	1	223178531	223178531	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:223178531C>T	uc001hnu.1	+	8	3939	c.3792C>T	c.(3790-3792)TTC>TTT	p.F1264F		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	1264					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TGTGTCACTTCTTCTCTCTGA	0.512													59	430					0	0	1	0	0
DISP1	84976	broad.mit.edu	37	1	223178811	223178811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:223178811C>T	uc001hnu.1	+	8	4219	c.4072C>T	c.(4072-4074)CAC>TAC	p.H1358Y		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	1358					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TTTTTTCCTCCACCCAGTGCA	0.512													20	294					0	0	1	0	0
TLR5	7100	broad.mit.edu	37	1	223284651	223284651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:223284651C>T	uc001hnv.1	-	4	2169	c.1723G>A	c.(1723-1725)GAT>AAT	p.D575N	TLR5_uc001hnw.1_Missense_Mutation_p.D575N	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	575	Extracellular (Potential).		Missing (in 10% of the population; abolishes flagellin signaling; associated with resistance to SLEB1).		cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		TGAGTTATATCCAAGACACTA	0.388													8	17					0	0	1	0	0
TLR5	7100	broad.mit.edu	37	1	223285804	223285804	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:223285804G>A	uc001hnv.1	-	4	1016	c.570C>T	c.(568-570)CTC>CTT	p.L190L	TLR5_uc001hnw.1_Silent_p.L190L	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	190	LRR 4.|Extracellular (Potential).				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		GTAGGGGCTCGAGCTCATGTT	0.423													4	37					0	0	1	0	0
SUSD4	55061	broad.mit.edu	37	1	223465962	223465962	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:223465962G>A	uc001hnx.2	-	2	814	c.180C>T	c.(178-180)CCC>CCT	p.P60P	SUSD4_uc001hny.3_Silent_p.P60P|SUSD4_uc010puw.1_5'UTR|SUSD4_uc001hnz.2_Silent_p.P60P|SUSD4_uc010pux.1_Intron	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	60	Sushi 1.|Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		CGGGAATGCCGGGGTCAGCAC	0.517													5	20					0	0	1	0	0
CAPN2	824	broad.mit.edu	37	1	223931832	223931832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:223931832C>T	uc001hob.3	+	3	562	c.338C>T	c.(337-339)TCC>TTC	p.S113F	CAPN2_uc010puy.1_Missense_Mutation_p.S35F	NM_001748	NP_001739	P17655	CAN2_HUMAN	calpain 2 isoform 1	113	Calpain catalytic.				proteolysis	cytoplasm|plasma membrane				lung(3)|breast(1)|skin(1)	5				GBM - Glioblastoma multiforme(131;0.109)		GCCATTGCCTCCCTCACCTTG	0.493													7	111					0	0	1	0	0
CAPN2	824	broad.mit.edu	37	1	223934850	223934850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:223934850C>T	uc001hob.3	+	5	936	c.712C>T	c.(712-714)CTT>TTT	p.L238F	CAPN2_uc010puy.1_Missense_Mutation_p.L160F	NM_001748	NP_001739	P17655	CAN2_HUMAN	calpain 2 isoform 1	238	Calpain catalytic.				proteolysis	cytoplasm|plasma membrane				lung(3)|breast(1)|skin(1)	5				GBM - Glioblastoma multiforme(131;0.109)		AGGCTCTCTCCTTGGCTGCTC	0.562													16	81					0	0	1	0	0
DEGS1	8560	broad.mit.edu	37	1	224377347	224377347	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:224377347G>C	uc001hoj.2	+	2	262	c.151G>C	c.(151-153)GTT>CTT	p.V51L	DEGS1_uc001hoi.2_Missense_Mutation_p.V30L	NM_144780	NP_659004	O15121	DEGS1_HUMAN	degenerative spermatocyte homolog 1, lipid	51	Helical; (Potential).				sphingolipid metabolic process|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	electron carrier activity|protein binding|sphingolipid delta-4 desaturase activity				0	Breast(184;0.193)			GBM - Glioblastoma multiforme(131;0.00643)		AATTATGATGGTTCTCACCCA	0.368													13	77					0	0	1	0	0
NVL	4931	broad.mit.edu	37	1	224482050	224482050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:224482050G>A	uc001hok.2	-	12	1287	c.1244C>T	c.(1243-1245)TCG>TTG	p.S415L	NVL_uc001hol.2_Missense_Mutation_p.S309L|NVL_uc010pvd.1_Missense_Mutation_p.S324L|NVL_uc010pve.1_Missense_Mutation_p.S226L|NVL_uc010pvf.1_RNA	NM_002533	NP_002524	O15381	NVL_HUMAN	nuclear VCP-like isoform 1	415						aggresome|cytoplasm|nucleolus	ATP binding|nucleoside-triphosphatase activity			skin(2)	2				GBM - Glioblastoma multiforme(131;0.00501)		AGGGTCTAACGAGTCTGGTCG	0.458													6	60					0	0	1	0	0
LEFTY1	10637	broad.mit.edu	37	1	226075129	226075129	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:226075129T>A	uc001hpo.2	-	3	777	c.707A>T	c.(706-708)GAG>GTG	p.E236V	LEFTY1_uc010pvj.1_Silent_p.G344G	NM_020997	NP_066277	O75610	LFTY1_HUMAN	left-right determination, factor B	236					cell growth|multicellular organismal development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity|transforming growth factor beta receptor binding				0	Breast(184;0.197)					GGTGTGCAGCTCCAGCTGGGG	0.612													5	56					0	0	1	0	0
C1orf55	163859	broad.mit.edu	37	1	226175879	226175879	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:226175879G>A	uc001hpu.3	-	6	905	c.852C>T	c.(850-852)ATC>ATT	p.I284I	C1orf55_uc001hpv.2_Silent_p.I284I	NM_152608	NP_689821	Q6IQ49	CA055_HUMAN	hypothetical protein LOC163859	284										lung(1)	1	Breast(184;0.197)					CAGTCACCGGGATCTGCAGTT	0.498													8	119					0	0	1	0	0
MIXL1	83881	broad.mit.edu	37	1	226413481	226413481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:226413481G>A	uc010pvm.1	+	2	667	c.667G>A	c.(667-669)GAA>AAA	p.E223K		NM_031944	NP_114150	Q9H2W2	MIXL1_HUMAN	Mix-like homeobox protein 1	223					cell differentiation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.109)		CTCATGGGAGGAACACATCTT	0.498													7	153					0	0	1	0	0
PARP1	142	broad.mit.edu	37	1	226555179	226555179	+	Splice_Site	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:226555179A>C	uc001hqd.3	-	17	2577	c.2406_splice	c.e17+1	p.K802_splice		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1						cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		TGACCCTGTTACCTTAATGTC	0.368								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					3	77					0	0	1	0	0
PARP1	142	broad.mit.edu	37	1	226566885	226566885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:226566885G>A	uc001hqd.3	-	12	1874	c.1703C>T	c.(1702-1704)TCC>TTC	p.S568F		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	568					cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		CTTGTAGTAGGAGTTGGTTCC	0.547								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					14	94					0	0	1	0	0
PARP1	142	broad.mit.edu	37	1	226570804	226570804	+	Silent	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:226570804G>T	uc001hqd.3	-	8	1263	c.1092C>A	c.(1090-1092)TCC>TCA	p.S364S		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	364					cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		TGGCCGCCACGGAGGCGCTGG	0.512								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					9	248					6.40141e-05	6.47291e-05	1	1	0
PARP1	142	broad.mit.edu	37	1	226578131	226578131	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:226578131G>A	uc001hqd.3	-	4	768	c.597C>T	c.(595-597)CTC>CTT	p.L199L		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	199	PARP-type 2.|				cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		TGACTCCTGGGAGCTGCTTCT	0.597								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					8	38					0	0	1	0	0
C1orf95	375057	broad.mit.edu	37	1	226784510	226784510	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:226784510C>T	uc010pvn.1	+	2	315	c.210C>T	c.(208-210)TTC>TTT	p.F70F		NM_001003665	NP_001003665	Q69YW2	CA095_HUMAN	hypothetical protein LOC375057	70	Helical; (Potential).					integral to membrane				ovary(1)	1	Breast(184;0.133)	Prostate(94;0.0885)		GBM - Glioblastoma multiforme(131;0.113)		CAGGGACATTCGTCTCGGCCT	0.632													7	105					0	0	1	0	0
PRSS38	339501	broad.mit.edu	37	1	228003912	228003912	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:228003912C>T	uc001hrh.2	+	2	270	c.270C>T	c.(268-270)CTC>CTT	p.L90L		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	90	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						GCTCCATCCTCAATGAGTACT	0.667													11	94					0	0	1	0	0
WNT9A	7483	broad.mit.edu	37	1	228109678	228109678	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:228109678G>A	uc001hri.2	-	4	727	c.639C>T	c.(637-639)ACC>ACT	p.T213T		NM_003395	NP_003386	O14904	WNT9A_HUMAN	wingless-type MMTV integration site family,	213					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|cornea development in camera-type eye|embryonic arm morphogenesis|embryonic skeletal joint morphogenesis|endoderm development|iris morphogenesis|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|neuron differentiation|positive regulation of smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding|signal transducer activity			central_nervous_system(1)|pancreas(1)	2		Prostate(94;0.0405)				ACTTGCAGGTGGTCTCCACCC	0.652													6	50					0	0	1	0	0
WNT9A	7483	broad.mit.edu	37	1	228112043	228112043	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:228112043C>T	uc001hri.2	-	3	499	c.411G>A	c.(409-411)CTG>CTA	p.L137L		NM_003395	NP_003386	O14904	WNT9A_HUMAN	wingless-type MMTV integration site family,	137					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|cornea development in camera-type eye|embryonic arm morphogenesis|embryonic skeletal joint morphogenesis|endoderm development|iris morphogenesis|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|neuron differentiation|positive regulation of smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding|signal transducer activity			central_nervous_system(1)|pancreas(1)	2		Prostate(94;0.0405)				ACGCCTTGGCCAGTGCGTGCG	0.677													10	60					0	0	1	0	0
MRPL55	128308	broad.mit.edu	37	1	228295508	228295508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:228295508G>A	uc001hry.2	-	2	833	c.89C>T	c.(88-90)TCC>TTC	p.S30F	MRPL55_uc001hrz.3_Missense_Mutation_p.S66F|MRPL55_uc009xex.2_Missense_Mutation_p.S30F|MRPL55_uc001hsa.3_Missense_Mutation_p.S30F|MRPL55_uc001hsb.3_Missense_Mutation_p.S30F|MRPL55_uc001hsc.3_Missense_Mutation_p.S30F|MRPL55_uc001hsd.3_Missense_Mutation_p.S30F|MRPL55_uc001hse.3_Missense_Mutation_p.S30F|MRPL55_uc001hsf.3_Missense_Mutation_p.S30F|MRPL55_uc001hsg.3_Missense_Mutation_p.S30F	NM_181465	NP_852130	Q7Z7F7	RM55_HUMAN	mitochondrial ribosomal protein L55 isoform a	30					translation	mitochondrial large ribosomal subunit	structural constituent of ribosome			central_nervous_system(1)	1		Prostate(94;0.0405)				AGCTCGCCAGGAGGATGTGTG	0.632													4	64					0	0	1	0	0
C1orf69	200205	broad.mit.edu	37	1	228363073	228363073	+	Silent	SNP	C	T	T	rs142734560	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:228363073C>T	uc001hsl.3	+	3	1019	c.930C>T	c.(928-930)TTC>TTT	p.F310F	C1orf69_uc010pvw.1_Silent_p.F117F	NM_001010867	NP_001010867	Q5T440	CAF17_HUMAN	hypothetical protein LOC200205 precursor	310					glycine catabolic process|heme biosynthetic process	mitochondrion	aminomethyltransferase activity				0		Prostate(94;0.0405)				TGGGCAAGTTCAGGGCTGGCC	0.637													18	52					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228464218	228464218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:228464218G>A	uc009xez.1	+	22	6332	c.6288G>A	c.(6286-6288)ATG>ATA	p.M2096I	OBSCN_uc001hsn.2_Missense_Mutation_p.M2096I|OBSCN_uc001hsp.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	2096	Ig-like 21.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CGGCTACCATGGAGGTGCAGC	0.706													5	62					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228464220	228464220	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:228464220A>G	uc009xez.1	+	22	6334	c.6290A>G	c.(6289-6291)GAG>GGG	p.E2097G	OBSCN_uc001hsn.2_Missense_Mutation_p.E2097G|OBSCN_uc001hsp.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	2097	Ig-like 21.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GCTACCATGGAGGTGCAGCTG	0.701													5	63					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228505323	228505323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:228505323G>A	uc009xez.1	+	52	13764	c.13720G>A	c.(13720-13722)GAG>AAG	p.E4574K	OBSCN_uc001hsn.2_Missense_Mutation_p.E4574K	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4574	Fibronectin type-III 3.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GCTGTGCCACGAGCTGGTGCC	0.682													5	31					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228523940	228523940	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:228523940G>A	uc009xez.1	+	64	16550	c.16506G>A	c.(16504-16506)GCG>GCA	p.A5502A	OBSCN_uc001hsn.2_Silent_p.A5502A|OBSCN_uc001hsr.1_Silent_p.A130A	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5502					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGGAAACTGCGAGTTTTGCTG	0.607													11	81					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228524704	228524704	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:228524704G>A	uc009xez.1	+	65	16582	c.16538_splice	c.e65-1	p.E5513_splice	OBSCN_uc001hsn.2_Splice_Site_p.E5513_splice|OBSCN_uc001hsr.1_Splice_Site_p.E141_splice	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and						apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGTATCCGCAGAAGAGCCTCT	0.448													3	10					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228556557	228556557	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:228556557C>T	uc009xez.1	+	89	19946	c.19902C>T	c.(19900-19902)ATC>ATT	p.I6634I	OBSCN_uc001hsr.1_Silent_p.I1263I	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	6634	Protein kinase 1.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CCCCCGAGATCATCCAGCAGA	0.577													9	74					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228563820	228563820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:228563820G>A	uc009xez.1	+	99	22942	c.22898G>A	c.(22897-22899)GGA>GAA	p.G7633E	OBSCN_uc001hsr.1_Missense_Mutation_p.G2262E	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	7633	Fibronectin type-III 4.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGCAAGGCAGGAATGGGTCCC	0.642													8	58					0	0	1	0	0
NUP133	55746	broad.mit.edu	37	1	229613413	229613413	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:229613413G>A	uc001htn.2	-	13	1779	c.1687C>T	c.(1687-1689)CAA>TAA	p.Q563*		NM_018230	NP_060700	Q8WUM0	NU133_HUMAN	nucleoporin 133kDa	563					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			breast(4)|skin(2)|ovary(1)	7	Breast(184;0.104)|Ovarian(103;0.249)	Prostate(94;0.167)				ACACTGATTTGGGTAACTGCC	0.453													7	30					0	0	1	0	0
URB2	9816	broad.mit.edu	37	1	229771092	229771092	+	Silent	SNP	G	A	A	rs143308460	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:229771092G>A	uc001hts.1	+	4	868	c.732G>A	c.(730-732)GGG>GGA	p.G244G	URB2_uc009xfd.1_Silent_p.G244G	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	244						nucleolus				central_nervous_system(2)|ovary(1)	3						TCCGAGGAGGGATTTTTCAGC	0.592													5	63					0	0	1	0	0
CAPN9	10753	broad.mit.edu	37	1	230895368	230895368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:230895368C>T	uc001htz.1	+	3	507	c.394C>T	c.(394-396)CAT>TAT	p.H132Y	CAPN9_uc009xfg.1_Intron|CAPN9_uc001hua.1_Missense_Mutation_p.H132Y	NM_006615	NP_006606	O14815	CAN9_HUMAN	calpain 9 isoform 1	132	Calpain catalytic.				digestion|proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)				CGGGATATTCCATTTCCAGGT	0.557													6	21					0	0	1	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232568155	232568155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:232568155G>A	uc001hvg.2	-	14	4252	c.4094C>T	c.(4093-4095)TCA>TTA	p.S1365L	SIPA1L2_uc001hvf.2_Missense_Mutation_p.S439L	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1365	Ser-rich.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				GACTTTGGATGAATCCAGAGA	0.483													5	55					0	0	1	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232626746	232626746	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:232626746G>A	uc001hvg.2	-	3	1838	c.1680C>T	c.(1678-1680)ACC>ACT	p.T560T		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	560					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				GTCCTCGTGCGGTACCATGCC	0.453													4	23					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233120181	233120181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:233120181C>T	uc001hvl.2	-	34	6518	c.6283G>A	c.(6283-6285)GGG>AGG	p.G2095R	PCNXL2_uc001hvk.1_3'UTR|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	2095						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TGAAGCTGCCCCTGCTCGGTG	0.592													4	100					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233136146	233136146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:233136146C>T	uc001hvl.2	-	30	5468	c.5233G>A	c.(5233-5235)GAG>AAG	p.E1745K	PCNXL2_uc001hvk.1_Missense_Mutation_p.E397K|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1745						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GTGAGCAGCTCTTCCTTGTTG	0.602													15	79					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233313642	233313642	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:233313642G>A	uc001hvl.2	-	17	3414	c.3179C>T	c.(3178-3180)TCC>TTC	p.S1060F	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1060						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TTGGATGAAGGACCTGAAAGT	0.418													5	21					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233514855	233514855	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:233514855C>T	uc001hvt.3	+	9	2364	c.2103C>T	c.(2101-2103)TCC>TCT	p.S701S	KIAA1804_uc001hvu.3_Silent_p.S147S	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	701				S -> T (in Ref. 1; CAC84640).	activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				CCACAGTCTCCATTGAGATGA	0.527													6	45					0	0	1	0	0
SLC35F3	148641	broad.mit.edu	37	1	234041402	234041402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:234041402G>A	uc001hvy.1	+	2	326	c.181G>A	c.(181-183)GAG>AAG	p.E61K		NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	Error:Variant_position_missing_in_Q8IY50_after_alignment					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			GCGCTCCGTGGAGGATCTCAC	0.637													4	65					0	0	1	0	0
ARID4B	51742	broad.mit.edu	37	1	235345538	235345538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:235345538G>A	uc001hwq.2	-	20	3194	c.2696C>T	c.(2695-2697)TCA>TTA	p.S899L	ARID4B_uc001hwr.2_Missense_Mutation_p.S813L|ARID4B_uc001hws.3_Missense_Mutation_p.S813L|ARID4B_uc001hwp.2_RNA|ARID4B_uc001hwt.3_Missense_Mutation_p.S580L	NM_016374	NP_057458	Q4LE39	ARI4B_HUMAN	AT rich interactive domain 4B isoform 1	899					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding			ovary(2)|lung(1)	3	Ovarian(103;0.0473)|Breast(184;0.23)	all_cancers(173;0.000782)|Prostate(94;0.0132)|all_epithelial(177;0.0808)|Lung SC(1967;0.24)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)			TGCCACTTCTGAAAATCCTGA	0.353													5	83					0	0	1	0	0
HEATR1	55127	broad.mit.edu	37	1	236767259	236767259	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:236767259G>A	uc001hyd.1	-	2	262	c.137C>T	c.(136-138)GCC>GTC	p.A46V	HEATR1_uc001hye.1_Missense_Mutation_p.A46V	NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	46					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			CTCACCAATGGCGAAGGCGGT	0.443													7	39					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236894533	236894533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:236894533G>A	uc001hyf.2	+	7	820	c.616G>A	c.(616-618)GAT>AAT	p.D206N	ACTN2_uc001hyg.2_5'UTR|ACTN2_uc009xgi.1_Missense_Mutation_p.D206N|ACTN2_uc010pxu.1_5'UTR	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	206	CH 2.|Actin-binding.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			TTTCATACAGGATGACCCCAT	0.378													4	44					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236906244	236906244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:236906244G>A	uc001hyf.2	+	11	1360	c.1156G>A	c.(1156-1158)GAG>AAG	p.E386K	ACTN2_uc001hyg.2_Missense_Mutation_p.E178K|ACTN2_uc009xgi.1_Missense_Mutation_p.E386K|ACTN2_uc010pxu.1_Missense_Mutation_p.E75K|ACTN2_uc001hyh.2_Missense_Mutation_p.E74K	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	386	Spectrin 1.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			GAAGGGTTACGAGGAGTGGTT	0.542													6	65					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236914814	236914814	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:236914814G>A	uc001hyf.2	+	15	1905	c.1701G>A	c.(1699-1701)GAG>GAA	p.E567E	ACTN2_uc001hyg.2_Silent_p.E359E|ACTN2_uc009xgi.1_Silent_p.E567E|ACTN2_uc010pxu.1_Silent_p.E256E|ACTN2_uc001hyh.2_Silent_p.E255E	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	567	Spectrin 3.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			CGCTGCCCGAGGCGGACGGAG	0.522													5	68					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236924324	236924324	+	Missense_Mutation	SNP	G	A	A	rs145450474		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:236924324G>A	uc001hyf.2	+	20	2581	c.2377G>A	c.(2377-2379)GAA>AAA	p.E793K	ACTN2_uc001hyg.2_Missense_Mutation_p.E585K|ACTN2_uc009xgi.1_Missense_Mutation_p.E793K|ACTN2_uc010pxu.1_Missense_Mutation_p.E482K|ACTN2_uc001hyh.2_Missense_Mutation_p.E481K	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	793	EF-hand 2.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			GGGTGAAGCCGAATTTGCCCG	0.512													9	55					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236924440	236924440	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:236924440C>T	uc001hyf.2	+	20	2697	c.2493C>T	c.(2491-2493)GTC>GTT	p.V831V	ACTN2_uc001hyg.2_Silent_p.V623V|ACTN2_uc009xgi.1_Silent_p.V831V|ACTN2_uc010pxu.1_Silent_p.V520V|ACTN2_uc001hyh.2_Silent_p.V519V	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	831					focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			CCGAGCAGGTCATCGCCTCCT	0.517													7	52					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237730007	237730007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:237730007C>T	uc001hyl.1	+	28	3475	c.3355C>T	c.(3355-3357)CGT>TGT	p.R1119C		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1119	Cytoplasmic (By similarity).|4 X approximate repeats.|B30.2/SPRY 2.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TGGTTGGAGTCGTCCTGGTTG	0.532													7	109					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237777484	237777484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:237777484C>T	uc001hyl.1	+	37	5176	c.5056C>T	c.(5056-5058)CTC>TTC	p.L1686F		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1686	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ACCTCAGCTCCTCTATGCCAT	0.552													5	23					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237801675	237801675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:237801675G>A	uc001hyl.1	+	45	6931	c.6811G>A	c.(6811-6813)GGT>AGT	p.G2271S		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2271	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TTATTTGGCTGGTTGTGGACT	0.408													8	70					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237813268	237813268	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:237813268T>G	uc001hyl.1	+	50	7724	c.7604T>G	c.(7603-7605)TTT>TGT	p.F2535C		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2535	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GCTCCTCTCTTTGCTGGCACA	0.483													17	97					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237947468	237947468	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:237947468C>T	uc001hyl.1	+	90	12576	c.12456C>T	c.(12454-12456)ATC>ATT	p.I4152I	RYR2_uc010pya.1_Silent_p.I567I	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4152					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ATTTTGAAATCAGTGAGTCCA	0.502													5	30					0	0	1	0	0
CHRM3	1131	broad.mit.edu	37	1	240071631	240071631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:240071631G>A	uc001hyp.2	+	5	1659	c.880G>A	c.(880-882)GAA>AAA	p.E294K		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	294	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	CAGCAGTTACGAACTTCAACA	0.547													7	27					0	0	1	0	0
CHRM3	1131	broad.mit.edu	37	1	240072361	240072361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:240072361G>A	uc001hyp.2	+	5	2389	c.1610G>A	c.(1609-1611)AGC>AAC	p.S537N		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	537	Helical; Name=7; (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	TACATCAACAGCACCGTGAAC	0.483													7	38					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240370908	240370908	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:240370908C>T	uc010pyd.1	+	5	3021	c.2796C>T	c.(2794-2796)CTC>CTT	p.L932L	FMN2_uc010pye.1_Silent_p.L936L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	932	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CAGGCATACTCCCTCTGCCCC	0.692													4	45					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240371642	240371643	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:240371642_240371643CC>TT	uc010pyd.1	+	5	3755_3756	c.3530_3531CC>TT	c.(3529-3531)CCC>CTT	p.P1177L	FMN2_uc010pye.1_Missense_Mutation_p.P1181L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1177	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCCCTCCGCCCCCTCTACCTG	0.688													5	5					0	0	1	0	0
RGS7	6000	broad.mit.edu	37	1	241262032	241262032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:241262032C>T	uc001hyv.2	-	3	439	c.109G>A	c.(109-111)GAA>AAA	p.E37K	RGS7_uc010pyh.1_Missense_Mutation_p.E11K|RGS7_uc010pyj.1_5'UTR|RGS7_uc001hyu.2_Missense_Mutation_p.E37K|RGS7_uc009xgn.1_Missense_Mutation_p.E37K|RGS7_uc001hyw.2_Missense_Mutation_p.E37K	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	37	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			CCATTTTTTTCATCTTGCATC	0.348													4	26					0	0	1	0	0
WDR64	128025	broad.mit.edu	37	1	241958551	241958551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:241958551G>A	uc001hzf.1	+	15	1822	c.1669G>A	c.(1669-1671)GAG>AAG	p.E557K	WDR64_uc001hzg.1_Missense_Mutation_p.E470K	NM_144625	NP_653226	B1ANS9	WDR64_HUMAN	WD repeat domain 64	1004										skin(1)	1	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			TGAAAACAGAGAGGCAGGGAT	0.418													7	43					0	0	1	0	0
CEP170	9859	broad.mit.edu	37	1	243328275	243328275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:243328275G>A	uc001hzs.2	-	13	3395	c.2987C>T	c.(2986-2988)TCC>TTC	p.S996F	CEP170_uc001hzt.2_Missense_Mutation_p.S898F|CEP170_uc001hzu.2_Missense_Mutation_p.S898F|CEP170_uc001hzv.1_Missense_Mutation_p.S374F	NM_014812	NP_055627	Q5SW79	CE170_HUMAN	centrosomal protein 170kDa isoform alpha	996	Targeting to microtubules.					centriole|microtubule|spindle				ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2	all_neural(11;0.101)	all_cancers(173;0.003)	all cancers(7;5.81e-06)|GBM - Glioblastoma multiforme(7;0.000443)|OV - Ovarian serous cystadenocarcinoma(106;0.0101)			CACATCTGTGGAACGACTTTT	0.403													4	48					0	0	1	0	0
KIF26B	55083	broad.mit.edu	37	1	245862273	245862273	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:245862273C>T	uc001ibf.1	+	14	6552	c.6112C>T	c.(6112-6114)CTG>TTG	p.L2038L		NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	2038					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			GTACGAGTGGCTGATGAAGGA	0.557													5	67					0	0	1	0	0
SMYD3	64754	broad.mit.edu	37	1	245927442	245927442	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:245927442G>A	uc001ibl.2	-	11	1181	c.1086C>T	c.(1084-1086)TTC>TTT	p.F362F	SMYD3_uc001ibk.2_Silent_p.F303F|SMYD3_uc001ibi.2_Missense_Mutation_p.P175S|SMYD3_uc001ibj.2_Silent_p.F173F	NM_022743	NP_073580	Q9H7B4	SMYD3_HUMAN	SET and MYND domain containing 3	362						cytoplasm|nucleus	histone-lysine N-methyltransferase activity|protein binding|zinc ion binding				0	all_cancers(71;0.000291)|all_epithelial(71;0.000174)|Ovarian(71;0.0377)|all_lung(81;0.0568)|Lung NSC(105;0.0804)|Breast(184;0.173)|Melanoma(84;0.242)	all_cancers(173;0.0496)|Acute lymphoblastic leukemia(190;0.164)	OV - Ovarian serous cystadenocarcinoma(106;0.0129)	all cancers(4;0.028)|GBM - Glioblastoma multiforme(49;0.0537)		GGCTTCCTGGGAAAAAAATCC	0.483													11	26					0	0	1	0	0
ZNF695	57116	broad.mit.edu	37	1	247150418	247150418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:247150418C>T	uc009xgu.2	-	4	1544	c.1399G>A	c.(1399-1401)GAA>AAA	p.E467K	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron|ZNF695_uc009xgt.1_Intron|ZNF695_uc001ibx.2_Intron|ZNF695_uc001iby.2_Intron	NM_020394	NP_065127	Q8IW36	ZN695_HUMAN	zinc finger protein SBZF3	467	C2H2-type 12.				regulation of transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			CCACATTCTTCACATTTGTAG	0.388													5	24					0	0	1	0	0
ZNF695	57116	broad.mit.edu	37	1	247150613	247150613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:247150613G>A	uc009xgu.2	-	4	1349	c.1204C>T	c.(1204-1206)CAT>TAT	p.H402Y	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron|ZNF695_uc009xgt.1_Intron|ZNF695_uc001ibx.2_Intron|ZNF695_uc001iby.2_Intron	NM_020394	NP_065127	Q8IW36	ZN695_HUMAN	zinc finger protein SBZF3	402	C2H2-type 9.				regulation of transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TGCCCAGTATGAATTCTCTTA	0.388													5	27					0	0	1	0	0
ZNF124	7678	broad.mit.edu	37	1	247320141	247320141	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:247320141G>A	uc001ick.2	-	4	922	c.783C>T	c.(781-783)CCC>CCT	p.P261P	ZNF124_uc001ici.2_Intron|ZNF124_uc001icj.1_Silent_p.P199P	NM_003431	NP_003422	Q15973	ZN124_HUMAN	zinc finger protein 124	261					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1	all_cancers(71;5.07e-05)|all_epithelial(71;8.72e-06)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0488)|Lung NSC(105;0.053)		OV - Ovarian serous cystadenocarcinoma(106;0.00739)			TACATGGATAGGGTTCTTCAC	0.428													4	53					0	0	1	0	0
VN1R5	317705	broad.mit.edu	37	1	247419691	247419691	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:247419691C>T	uc010pyu.1	+	2	318	c.318C>T	c.(316-318)TTC>TTT	p.F106F		NM_173858	NP_776257	Q7Z5H4	VN1R5_HUMAN	vomeronasal 1 receptor 5	106	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0	all_cancers(71;5.7e-05)|all_epithelial(71;1.03e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)	all_cancers(173;0.0314)	OV - Ovarian serous cystadenocarcinoma(106;0.00854)			CCTTAGACTTCTTTGGTTCAC	0.453													5	84					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247588011	247588011	+	Silent	SNP	G	A	A	rs143305855		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:247588011G>A	uc001icr.2	+	5	1404	c.1266G>A	c.(1264-1266)CTG>CTA	p.L422L	NLRP3_uc001ics.2_Silent_p.L422L|NLRP3_uc001icu.2_Silent_p.L422L|NLRP3_uc001icw.2_Silent_p.L422L|NLRP3_uc001icv.2_Silent_p.L422L|NLRP3_uc010pyw.1_Silent_p.L420L|NLRP3_uc001ict.1_Silent_p.L420L	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	422	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding	p.L422L(1)		lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GCACTGGACTGAAACAGCAGA	0.582													7	50					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247588121	247588121	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:247588121A>G	uc001icr.2	+	5	1514	c.1376A>G	c.(1375-1377)GAG>GGG	p.E459G	NLRP3_uc001ics.2_Missense_Mutation_p.E459G|NLRP3_uc001icu.2_Missense_Mutation_p.E459G|NLRP3_uc001icw.2_Missense_Mutation_p.E459G|NLRP3_uc001icv.2_Missense_Mutation_p.E459G|NLRP3_uc010pyw.1_Missense_Mutation_p.E457G|NLRP3_uc001ict.1_Missense_Mutation_p.E457G	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	459	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GGGAGCCAGGAGCACGGCCTC	0.587													3	30					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247592898	247592898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:247592898G>A	uc001icr.2	+	6	2306	c.2168G>A	c.(2167-2169)AGC>AAC	p.S723N	NLRP3_uc001ics.2_Missense_Mutation_p.S723N|NLRP3_uc001icu.2_Missense_Mutation_p.S723N|NLRP3_uc001icw.2_Intron|NLRP3_uc001icv.2_Intron|NLRP3_uc010pyw.1_Missense_Mutation_p.S721N	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	723					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TTGGTGAACAGCCACCTCACT	0.507													8	118					0	0	1	0	0
OR2B11	127623	broad.mit.edu	37	1	247614755	247614755	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:247614755A>C	uc010pyx.1	-	1	530	c.530T>G	c.(529-531)GTG>GGG	p.V177G		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			GTTGTTCAGCACCTGCCGCCC	0.592													3	18					0	0	1	0	0
C1orf150	148823	broad.mit.edu	37	1	247712508	247712508	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:247712508C>T	uc001idf.2	+	1	60	c.15C>T	c.(13-15)CTC>CTT	p.L5L	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_RNA|C1orf150_uc001idb.3_RNA|C1orf150_uc009xgx.2_Intron	NM_145278	NP_660321	Q5JQS6	CA150_HUMAN	hypothetical protein LOC148823	5											0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0241)			GAAATTATCTCCTGCGAAAAC	0.468													9	43					0	0	1	0	0
OR2G2	81470	broad.mit.edu	37	1	247752325	247752325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:247752325G>A	uc010pyy.1	+	1	664	c.664G>A	c.(664-666)GGC>AGC	p.G222S		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	222	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GGTCTCCTCTGGCTACATTGC	0.463													4	33					0	0	1	0	0
TRIM58	25893	broad.mit.edu	37	1	248039388	248039388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:248039388G>A	uc001ido.2	+	6	1106	c.1058G>A	c.(1057-1059)GGA>GAA	p.G353E	OR2W3_uc001idp.1_Intron	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	353	B30.2/SPRY.					intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GTTCTGGTGGGAGAAGGAGCA	0.572													5	41					0	0	1	0	0
TRIM58	25893	broad.mit.edu	37	1	248039742	248039742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:248039742C>T	uc001ido.2	+	6	1460	c.1412C>T	c.(1411-1413)TCC>TTC	p.S471F	OR2W3_uc001idp.1_Intron	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	471						intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AATTGGGCATCCAGGGATCAT	0.463													7	50					0	0	1	0	0
OR2W3	343171	broad.mit.edu	37	1	248059060	248059060	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:248059060C>T	uc001idp.1	+	3	441	c.172C>T	c.(172-174)CCC>TCC	p.P58S	OR2W3_uc010pzb.1_Missense_Mutation_p.P58S	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CCTCCACACCCCCATGTACTT	0.572													15	127					0	0	1	0	0
OR2W3	343171	broad.mit.edu	37	1	248059074	248059074	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:248059074C>T	uc001idp.1	+	3	455	c.186C>T	c.(184-186)TTC>TTT	p.F62F	OR2W3_uc010pzb.1_Silent_p.F62F	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TGTACTTCTTCCTCGCCCACC	0.572													23	109					0	0	1	0	0
OR2L1P	26247	broad.mit.edu	37	1	248154351	248154351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:248154351C>T	uc001idv.1	+	1	783	c.539C>T	c.(538-540)CCA>CTA	p.P180L	OR2L13_uc001ids.2_Intron	NR_002145				RecName: Full=Olfactory receptor 2L5; AltName: Full=Olfactory receptor OR1-53;												0						TATCTACGCCCAAGATCCCTG	0.512													5	42					0	0	1	0	0
OR2L3	391192	broad.mit.edu	37	1	248224643	248224643	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:248224643T>C	uc001idx.1	+	1	660	c.660T>C	c.(658-660)GTT>GTC	p.V220V	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			ATGGCCGGGTTCTCCTTGCTG	0.493													9	54					0	0	1	0	0
OR2L3	391192	broad.mit.edu	37	1	248224777	248224777	+	Missense_Mutation	SNP	G	A	A	rs148776094		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:248224777G>A	uc001idx.1	+	1	794	c.794G>A	c.(793-795)CGA>CAA	p.R265Q	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			AGATCCCTGCGATCTCCAACA	0.507													4	41					0	0	1	0	0
OR2L13	284521	broad.mit.edu	37	1	248262956	248262956	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:248262956C>T	uc001ids.2	+	3	616	c.279C>T	c.(277-279)TTC>TTT	p.F93F		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			GCATCTCCTTCCTGGGATGTG	0.542													7	120					0	0	1	0	0
OR2L13	284521	broad.mit.edu	37	1	248263533	248263533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:248263533C>T	uc001ids.2	+	3	1193	c.856C>T	c.(856-858)CCC>TCC	p.P286S		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			CATGCTCAATCCCATTATCTA	0.488													5	38					0	0	1	0	0
OR2M2	391194	broad.mit.edu	37	1	248343409	248343409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:248343409G>A	uc010pzf.1	+	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GCCTTCATGGGAAACTCTGTC	0.517													13	109					0	0	1	0	0
OR2T12	127064	broad.mit.edu	37	1	248458011	248458011	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:248458011C>T	uc010pzj.1	-	1	870	c.870G>A	c.(868-870)GTG>GTA	p.V290V		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	290	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			CACTGTTCCTCACACTGTAGA	0.478													15	108					0	0	1	0	0
OR2T12	127064	broad.mit.edu	37	1	248458341	248458341	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:248458341G>A	uc010pzj.1	-	1	540	c.540C>T	c.(538-540)CCC>CCT	p.P180P		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			GCACCAACACGGGGGCCTCGC	0.562													14	61					0	0	1	0	0
OR2T4	127074	broad.mit.edu	37	1	248525236	248525236	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:248525236C>T	uc001ieh.1	+	1	354	c.354C>T	c.(352-354)GTC>GTT	p.V118V		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	118	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGGACCAGGTCATGGGTGTGA	0.498													6	57					0	0	1	0	0
OR2T4	127074	broad.mit.edu	37	1	248525813	248525813	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:248525813A>T	uc001ieh.1	+	1	931	c.931A>T	c.(931-933)ACC>TCC	p.T311S		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	311	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGTCTTCTATACCATCCTCAC	0.478													10	44					0	0	1	0	0
FBXO18	84893	broad.mit.edu	37	10	5951148	5951148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:5951148C>T	uc001iis.2	+	5	1006	c.911C>T	c.(910-912)CCG>CTG	p.P304L	FBXO18_uc001iir.2_Missense_Mutation_p.P230L|FBXO18_uc009xig.2_Missense_Mutation_p.P230L|FBXO18_uc001iit.2_Missense_Mutation_p.P355L	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	304					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						AAGTGCTCTCCGAGTGTGGAT	0.572													5	76					0	0	1	0	0
IL2RA	3559	broad.mit.edu	37	10	6061852	6061852	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:6061852G>A	uc001iiz.1	-	5	795	c.636C>T	c.(634-636)TCC>TCT	p.S212S	IL2RA_uc009xih.1_Silent_p.S140S|IL2RA_uc001ija.1_Intron	NM_000417	NP_000408	P01589	IL2RA_HUMAN	interleukin 2 receptor, alpha chain precursor	212	Extracellular (Potential).				cell proliferation	integral to membrane	interleukin-2 receptor activity			ovary(1)|skin(1)	2					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	TGACGAGGCAGGAAGTCTCAC	0.577													12	53					0	0	1	0	0
PFKFB3	5209	broad.mit.edu	37	10	6258674	6258674	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:6258674C>T	uc001ije.2	+	5	756	c.372C>T	c.(370-372)TTC>TTT	p.F124F	PFKFB3_uc001ijd.2_Silent_p.F104F|PFKFB3_uc009xii.2_RNA|PFKFB3_uc010qaw.1_Silent_p.F138F|PFKFB3_uc001ijf.2_Silent_p.F124F	NM_004566	NP_004557	Q16875	F263_HUMAN	6-phosphofructo-2-kinase/fructose-2,	124	6-phosphofructo-2-kinase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(2)|central_nervous_system(1)	3						ATCAGGTTTTCGATGCCACCA	0.438													42	169					0	0	1	0	0
PFKFB3	5209	broad.mit.edu	37	10	6274874	6274874	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:6274874G>T	uc001ije.2	+	15	1916	c.1532G>T	c.(1531-1533)CGG>CTG	p.R511L	PFKFB3_uc001ijd.2_Missense_Mutation_p.R491L|PFKFB3_uc009xii.2_RNA|PFKFB3_uc010qaw.1_Missense_Mutation_p.R525L|PFKFB3_uc001ijf.2_3'UTR|PFKFB3_uc001ijg.2_RNA|PFKFB3_uc009xij.2_RNA|PFKFB3_uc009xik.2_RNA|PFKFB3_uc009xil.2_RNA	NM_004566	NP_004557	Q16875	F263_HUMAN	6-phosphofructo-2-kinase/fructose-2,	511	Fructose-2,6-bisphosphatase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(2)|central_nervous_system(1)	3						AAAGGCTCCCGGAGCAGCGCT	0.537													4	128					1	1	1	1	0
PRKCQ	5588	broad.mit.edu	37	10	6527202	6527202	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:6527202G>A	uc001ijj.1	-	10	1005	c.930C>T	c.(928-930)ATC>ATT	p.I310I	PRKCQ_uc009xim.1_Silent_p.I310I|PRKCQ_uc001iji.1_Silent_p.I343I|PRKCQ_uc009xin.1_Silent_p.I274I|PRKCQ_uc010qax.1_Silent_p.I185I	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	310					axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						CTTCTCTGAAGATCTGTTCAG	0.507													13	69					0	0	1	0	0
PRKCQ	5588	broad.mit.edu	37	10	6527997	6527997	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:6527997C>T	uc001ijj.1	-	9	975	c.900G>A	c.(898-900)CAG>CAA	p.Q300Q	PRKCQ_uc009xim.1_Silent_p.Q300Q|PRKCQ_uc001iji.1_Silent_p.Q333Q|PRKCQ_uc009xin.1_Silent_p.Q264Q|PRKCQ_uc010qax.1_Silent_p.Q175Q	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	300					axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						ATGCTCCTACCTGTTGAGTGC	0.542													6	37					0	0	1	0	0
SFMBT2	57713	broad.mit.edu	37	10	7212938	7212938	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:7212938G>A	uc009xio.1	-	20	2587	c.2496C>T	c.(2494-2496)TTC>TTT	p.F832F	SFMBT2_uc001ijn.1_Silent_p.F832F|SFMBT2_uc010qay.1_Silent_p.F667F	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	832	SAM.				regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						TCAGCTTAATGAACCTCACCA	0.493													6	101					0	0	1	0	0
GATA3	2625	broad.mit.edu	37	10	8115874	8115874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:8115874C>T	uc001ika.2	+	6	1777	c.1220C>T	c.(1219-1221)TCG>TTG	p.S407L	GATA3_uc001ijz.2_Missense_Mutation_p.S408L	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	407					aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding			breast(17)|ovary(3)|central_nervous_system(2)	22						AGCCACATCTCGCCCTTCAGC	0.602			F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						9	72					0	0	1	0	0
CELF2	10659	broad.mit.edu	37	10	11367872	11367872	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:11367872C>T	uc001iki.3	+	12	1421	c.1329C>T	c.(1327-1329)TTC>TTT	p.F443F	CELF2_uc010qbj.1_Silent_p.F449F|CELF2_uc001ikk.2_Silent_p.F468F|CELF2_uc001ikl.3_Silent_p.F456F|CELF2_uc010qbl.1_Silent_p.F419F|CELF2_uc010qbm.1_Silent_p.F215F|CELF2_uc001iko.3_Silent_p.F423F|CELF2_uc001ikp.3_Silent_p.F425F|CELF2_uc010qbn.1_Silent_p.F431F|CELF2_uc010qbo.1_Silent_p.F338F|CELF2_uc010qbp.1_Silent_p.F215F	NM_001025077	NP_001020248	O95319	CELF2_HUMAN	CUG triplet repeat, RNA binding protein 2	443	RRM 3.|Necessary for RNA-binding, TNNT2 exon 5 and NMDA R1 exon 21 inclusion.				mRNA processing|regulation of heart contraction	cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding				0						TGCAGATGTTCATGCCTTTTG	0.403													5	56					0	0	1	0	0
UPF2	26019	broad.mit.edu	37	10	11971910	11971910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:11971910G>A	uc001ila.2	-	20	4237	c.3763C>T	c.(3763-3765)CCG>TCG	p.P1255S	UPF2_uc001ilb.2_Missense_Mutation_p.P1255S|UPF2_uc001ilc.2_Missense_Mutation_p.P1255S	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	1255	Sufficient for interaction with UPF1 C- terminus.|Sufficient for interaction with EIF4A1 and EIF1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				GCTCCCTTCGGATGTTGGTAG	0.463													81	315					0	0	1	0	0
DHTKD1	55526	broad.mit.edu	37	10	12143138	12143138	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:12143138C>T	uc001ild.3	+	10	1953	c.1854C>T	c.(1852-1854)ATC>ATT	p.I618I		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain	618					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			ACACCTACATCCCCCTGAACC	0.463													57	174					0	0	1	0	0
CAMK1D	57118	broad.mit.edu	37	10	12858259	12858259	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:12858259C>T	uc001ilo.2	+	8	1000	c.765C>T	c.(763-765)TTC>TTT	p.F255F	CAMK1D_uc001iln.2_Silent_p.F255F	NM_153498	NP_705718	Q8IU85	KCC1D_HUMAN	calcium/calmodulin-dependent protein kinase ID	255	Protein kinase.					calcium- and calmodulin-dependent protein kinase complex|cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|stomach(1)	2				GBM - Glioblastoma multiforme(1;3.16e-05)		CAAAAGACTTCATTCGGAACC	0.507													37	157					0	0	1	0	0
CCDC3	83643	broad.mit.edu	37	10	13040470	13040470	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:13040470G>A	uc001ilq.1	-	2	551	c.417C>T	c.(415-417)TTC>TTT	p.F139F	CCDC3_uc009xjb.1_Intron|CCDC3_uc001ilr.2_RNA|CCDC3_uc009xjc.1_Intron	NM_031455	NP_113643	Q9BQI4	CCDC3_HUMAN	coiled-coil domain containing 3 precursor	139						endoplasmic reticulum|extracellular region				ovary(1)	1		Ovarian(717;0.0822)	BRCA - Breast invasive adenocarcinoma(52;0.163)			TGGCATCTTGGAAATTGACTC	0.458													6	46					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255716	15255716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:15255716C>T	uc001iob.2	-	8	1878	c.1871G>A	c.(1870-1872)GGG>GAG	p.G624E		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	624	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TGGGAAGATCCCGGCATGGGG	0.637													28	65					0	0	1	0	0
FAM188A	80013	broad.mit.edu	37	10	15885240	15885240	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:15885240G>A	uc001iod.1	-	3	427	c.206C>T	c.(205-207)TCG>TTG	p.S69L	FAM188A_uc001ioe.1_5'UTR|FAM188A_uc001iof.1_Missense_Mutation_p.S69L	NM_024948	NP_079224	Q9H8M7	F188A_HUMAN	chromosome 10 open reading frame 97	69					apoptosis	nucleus	calcium ion binding			ovary(1)	1						AGACTTCTCCGAAGAAAACAG	0.323													5	28					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21101837	21101837	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:21101837C>T	uc001iqi.2	-	24	2776	c.2379G>A	c.(2377-2379)AAG>AAA	p.K793K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Silent_p.K130K	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	793	Nebulin 22.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						AGCCTCTCCCCTTTGTTTTTT	0.423													3	11					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21108375	21108375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:21108375C>T	uc001iqi.2	-	20	2430	c.2033G>A	c.(2032-2034)CGA>CAA	p.R678Q	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	678	Nebulin 19.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CTCCTGGTTTCGCCTCACTCT	0.408													5	55					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24784088	24784088	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:24784088G>A	uc001iru.3	+	8	2200	c.1797G>A	c.(1795-1797)ATG>ATA	p.M599I	KIAA1217_uc001irs.2_Missense_Mutation_p.M519I|KIAA1217_uc001irt.3_Missense_Mutation_p.M564I|KIAA1217_uc010qcy.1_Missense_Mutation_p.M564I|KIAA1217_uc010qcz.1_Missense_Mutation_p.M564I|KIAA1217_uc001irv.1_Missense_Mutation_p.M414I|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.M282I|KIAA1217_uc001irz.2_Missense_Mutation_p.M282I|KIAA1217_uc001irx.2_Missense_Mutation_p.M282I|KIAA1217_uc001iry.2_Missense_Mutation_p.M282I	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	599					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AGAAAATGATGAAAACCACAG	0.433													4	30					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24809157	24809157	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:24809157G>A	uc001iru.3	+	11	2686	c.2283G>A	c.(2281-2283)GTG>GTA	p.V761V	KIAA1217_uc001irs.2_Silent_p.V681V|KIAA1217_uc001irt.3_Silent_p.V726V|KIAA1217_uc010qcy.1_Silent_p.V726V|KIAA1217_uc010qcz.1_Silent_p.V726V|KIAA1217_uc001irv.1_Silent_p.V576V|KIAA1217_uc010qda.1_Intron|KIAA1217_uc001irw.2_Silent_p.V444V|KIAA1217_uc001irz.2_Silent_p.V444V|KIAA1217_uc001irx.2_Silent_p.V444V|KIAA1217_uc001iry.2_Silent_p.V444V	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	761					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						TGCGTCAAGTGGGAGAGGCTG	0.522													18	103					0	0	1	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24909176	24909176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:24909176G>A	uc001isb.2	-	9	2135	c.1648C>T	c.(1648-1650)CAT>TAT	p.H550Y	ARHGAP21_uc010qdb.1_RNA|ARHGAP21_uc009xkl.1_Missense_Mutation_p.H550Y|ARHGAP21_uc010qdc.1_Missense_Mutation_p.H385Y|ARHGAP21_uc001isc.1_Missense_Mutation_p.H540Y	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	549					signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						AAAGATTTATGAATTTCTTGC	0.418													5	22					0	0	1	0	0
THNSL1	79896	broad.mit.edu	37	10	25313574	25313574	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:25313574C>T	uc001isi.3	+	3	1751	c.1422C>T	c.(1420-1422)GGC>GGT	p.G474G	ENKUR_uc001ish.1_Intron	NM_024838	NP_079114	Q8IYQ7	THNS1_HUMAN	threonine synthase-like 1	474					threonine biosynthetic process		ATP binding|pyridoxal phosphate binding|shikimate kinase activity|threonine synthase activity			pancreas(1)	1					L-Threonine(DB00156)|Pyridoxal Phosphate(DB00114)	TAAACTGGGGCCGACTACTTC	0.383													10	49					0	0	1	0	0
GPR158	57512	broad.mit.edu	37	10	25464920	25464920	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:25464920T>A	uc001isj.2	+	1	631	c.571T>A	c.(571-573)TTC>ATC	p.F191I	LOC100128811_uc010qde.1_Missense_Mutation_p.K11M	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	191	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CCCACAGGTCTTCCTCCAGGC	0.682													8	20					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26462972	26462973	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:26462972_26462973GG>AA	uc001isn.2	+	30	4139_4140	c.3779_3780GG>AA	c.(3778-3780)AGG>AAA	p.R1260K	MYO3A_uc009xkp.1_Intron|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1260					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						TATCTAGAAAGGAAGGCCATAT	0.421													5	32					0	0	1	0	0
GAD2	2572	broad.mit.edu	37	10	26508041	26508041	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:26508041T>C	uc001isp.2	+	4	859	c.356T>C	c.(355-357)CTT>CCT	p.L119P	GAD2_uc009xkr.2_Missense_Mutation_p.L119P|GAD2_uc001isq.2_Missense_Mutation_p.L119P	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	119					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	AACATTTTACTTCAGTATGTG	0.383													4	61					0	0	1	0	0
ANKRD26	22852	broad.mit.edu	37	10	27350157	27350157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:27350157G>A	uc001ith.2	-	13	1550	c.1378C>T	c.(1378-1380)CCT>TCT	p.P460S	ANKRD26_uc001itg.2_Intron|ANKRD26_uc009xku.1_Missense_Mutation_p.P460S	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	460						centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						ATGCAAGAAGGTATATAAAAC	0.294													15	90					0	0	1	0	0
YME1L1	10730	broad.mit.edu	37	10	27437927	27437927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:27437927G>A	uc001iti.2	-	2	258	c.76C>T	c.(76-78)CCA>TCA	p.P26S	YME1L1_uc001itj.2_Missense_Mutation_p.P26S|YME1L1_uc010qdl.1_Missense_Mutation_p.P26S|YME1L1_uc009xkv.2_RNA|YME1L1_uc001itk.1_Missense_Mutation_p.P26S	NM_139312	NP_647473	Q96TA2	YMEL1_HUMAN	YME1-like 1 isoform 1	26					protein catabolic process|proteolysis	membrane|mitochondrion	ATP binding|metal ion binding|metalloendopeptidase activity|nucleoside-triphosphatase activity			ovary(1)	1						GTGTTTTTTGGTGTATGGAAG	0.378													51	164					0	0	1	0	0
ACBD5	91452	broad.mit.edu	37	10	27499923	27499923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:27499923G>A	uc010qdp.1	-	9	1215	c.1024C>T	c.(1024-1026)CGT>TGT	p.R342C	ACBD5_uc010qdm.1_Missense_Mutation_p.R340C|ACBD5_uc010qdn.1_Missense_Mutation_p.R233C|ACBD5_uc010qdo.1_Missense_Mutation_p.R165C|ACBD5_uc001ito.2_Missense_Mutation_p.R307C|ACBD5_uc001itp.2_Missense_Mutation_p.R233C|ACBD5_uc001itq.2_Missense_Mutation_p.R233C|ACBD5_uc001itr.1_Missense_Mutation_p.R131C	NM_145698	NP_663736	Q5T8D3	ACBD5_HUMAN	acyl-Coenzyme A binding domain containing 5	351					transport	integral to membrane|peroxisomal membrane	fatty-acyl-CoA binding				0						ATATCTTCACGAAATCCAGAA	0.418													20	88					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27687393	27687393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:27687393G>A	uc001itu.2	-	4	2252	c.2134C>T	c.(2134-2136)CCT>TCT	p.P712S		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	712					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						TTCTCATTAGGATCTTGGCTG	0.254													5	18					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702340	27702340	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:27702340C>T	uc001itu.2	-	1	958	c.840G>A	c.(838-840)CTG>CTA	p.L280L		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	280					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						AGATGCTGCTCAGGTTGAGCG	0.627													5	47					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702628	27702628	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:27702628G>A	uc001itu.2	-	1	670	c.552C>T	c.(550-552)TTC>TTT	p.F184F		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	184					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GGCCCTGCACGAAGCGCCGCT	0.627													7	157					0	0	1	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702970	27702970	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:27702970C>T	uc001itu.2	-	1	328	c.210G>A	c.(208-210)GAG>GAA	p.E70E		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	70					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CATCGTCCCCCTCTGGCAGGG	0.711													15	62					0	0	1	0	0
MKX	283078	broad.mit.edu	37	10	27964478	27964478	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:27964478G>A	uc001ity.3	-	6	1069	c.844C>T	c.(844-846)CTG>TTG	p.L282L	MKX_uc001itx.3_Silent_p.L282L	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	282					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CCGTTTTCCAGAGTGTCTGTA	0.373													4	9					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28101482	28101482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:28101482G>A	uc009xky.2	-	20	3192	c.3094C>T	c.(3094-3096)CGC>TGC	p.R1032C	ARMC4_uc010qds.1_Silent_p.S597S|ARMC4_uc010qdt.1_Missense_Mutation_p.R724C|ARMC4_uc001itz.2_Missense_Mutation_p.R1032C	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	1032	ARM 10.						binding			ovary(4)|skin(2)	6						GCCAGCCTGCGGATATTGGAT	0.463													10	29					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28273157	28273157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:28273157C>T	uc009xky.2	-	5	736	c.638G>A	c.(637-639)GGA>GAA	p.G213E	ARMC4_uc010qds.1_5'Flank|ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Missense_Mutation_p.G213E|ARMC4_uc010qdu.1_5'Flank	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	213							binding			ovary(4)|skin(2)	6						GTTTCCTTTTCCTGAGAAACG	0.308													7	27					0	0	1	0	0
MPP7	143098	broad.mit.edu	37	10	28378627	28378627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:28378627C>T	uc001iua.1	-	14	1500	c.1096G>A	c.(1096-1098)GAA>AAA	p.E366K	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.E366K|MPP7_uc009xla.2_Missense_Mutation_p.E366K|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	366					establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						CTGTATTTTTCATTAGTTTGT	0.393													4	51					0	0	1	0	0
MPP7	143098	broad.mit.edu	37	10	28420502	28420502	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:28420502T>A	uc001iua.1	-	8	838	c.434A>T	c.(433-435)AAT>ATT	p.N145I	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.N145I|MPP7_uc009xla.2_Missense_Mutation_p.N145I|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	145	PDZ.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						TGGTTCTCTATTTTTGACCAG	0.403													6	30					0	0	1	0	0
WAC	51322	broad.mit.edu	37	10	28872388	28872388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:28872388C>T	uc001iuf.2	+	4	420	c.335C>T	c.(334-336)TCA>TTA	p.S112L	WAC_uc001iud.2_Missense_Mutation_p.S67L|WAC_uc001iue.2_Intron|WAC_uc009xlb.2_Missense_Mutation_p.S67L|WAC_uc001iug.2_Missense_Mutation_p.S112L|WAC_uc001iuh.2_Missense_Mutation_p.S67L	NM_016628	NP_057712	Q9BTA9	WAC_HUMAN	WW domain-containing adapter with a coiled-coil	112					cell cycle checkpoint|histone H2B conserved C-terminal lysine ubiquitination|histone monoubiquitination|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nuclear speck	chromatin binding|RNA polymerase II core binding			large_intestine(1)|ovary(1)	2						AGTTCAAATTCACATTCTTCT	0.318													10	62					0	0	1	0	0
MTPAP	55149	broad.mit.edu	37	10	30611337	30611337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:30611337G>A	uc001iva.3	-	6	1265	c.1202C>T	c.(1201-1203)TCC>TTC	p.S401F	MTPAP_uc001ivb.3_Missense_Mutation_p.S531F	NM_018109	NP_060579	Q9NVV4	PAPD1_HUMAN	PAP associated domain containing 1 precursor	401					cell death|histone mRNA catabolic process|mRNA polyadenylation|transcription, DNA-dependent	mitochondrion	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|protein homodimerization activity|RNA binding|UTP binding			ovary(1)	1						GGTTTTTAAGGAATCTAGTGT	0.368													6	56					0	0	1	0	0
ZNF438	220929	broad.mit.edu	37	10	31137780	31137780	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:31137780G>A	uc010qdz.1	-	7	1989	c.1554C>T	c.(1552-1554)TTC>TTT	p.F518F	ZNF438_uc001ivn.2_Silent_p.F469F|ZNF438_uc010qdy.1_Silent_p.F508F|ZNF438_uc001ivo.3_Silent_p.F82F|ZNF438_uc009xlg.2_Silent_p.F518F|ZNF438_uc001ivp.3_Silent_p.F508F|ZNF438_uc010qea.1_Silent_p.F518F|ZNF438_uc010qeb.1_Silent_p.F518F|ZNF438_uc010qec.1_Silent_p.F82F	NM_182755	NP_877432	Q7Z4V0	ZN438_HUMAN	zinc finger protein 438 isoform a	518	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2		Prostate(175;0.0587)				GGTGCTGTTTGAACTGGAAGT	0.512													14	171					0	0	1	0	0
NRP1	8829	broad.mit.edu	37	10	33475373	33475373	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:33475373C>T	uc001iwx.3	-	14	2629	c.2106G>A	c.(2104-2106)AAG>AAA	p.K702K	NRP1_uc001iwv.3_Silent_p.K702K|NRP1_uc009xlz.2_Silent_p.K696K|NRP1_uc001iww.3_Silent_p.K514K|NRP1_uc001iwy.3_Silent_p.K695K	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	702	Extracellular (Potential).|MAM.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	CCACTTTGCCCTTCTGATTTT	0.512													9	38					0	0	1	0	0
ZNF248	57209	broad.mit.edu	37	10	38121200	38121200	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:38121200G>A	uc001izd.1	-	6	1582	c.1083C>T	c.(1081-1083)TTC>TTT	p.F361F	ZNF248_uc009xmc.2_Intron|ZNF248_uc001izb.2_Intron|ZNF248_uc001izc.2_Intron|ZNF248_uc010qeu.1_Silent_p.F361F	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	361					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ACTTCTTGCTGAAATTACTCC	0.413													9	12					0	0	1	0	0
BMS1	9790	broad.mit.edu	37	10	43287194	43287194	+	Silent	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:43287194T>G	uc001jaj.2	+	6	1114	c.756T>G	c.(754-756)TCT>TCG	p.S252S		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	252					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						GGCAAACTTCTCACCCTTATA	0.373													7	118					0	0	1	0	0
RET	5979	broad.mit.edu	37	10	43601823	43601823	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:43601823G>A	uc001jal.2	+	5	1058	c.868_splice	c.e5-1	p.D290_splice	RET_uc001jak.1_Splice_Site_p.D290_splice|RET_uc010qez.1_Splice_Site_p.D36_splice	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a						homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	GCATCCTGCAGGACACCGTGG	0.627		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				5	27					0	0	1	0	0
RET	5979	broad.mit.edu	37	10	43601965	43601965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:43601965G>A	uc001jal.2	+	5	1199	c.1009G>A	c.(1009-1011)GAG>AAG	p.E337K	RET_uc001jak.1_Missense_Mutation_p.E337K|RET_uc010qez.1_Missense_Mutation_p.E83K	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	337	Extracellular (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	CTGGCCCAACGAGACCTCGGT	0.652		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				8	29					0	0	1	0	0
RET	5979	broad.mit.edu	37	10	43601981	43601981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:43601981C>T	uc001jal.2	+	5	1215	c.1025C>T	c.(1024-1026)GCC>GTC	p.A342V	RET_uc001jak.1_Missense_Mutation_p.A342V|RET_uc010qez.1_Missense_Mutation_p.A88V	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	342	Extracellular (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	TCGGTCCAGGCCAACGGCAGC	0.647		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				6	27					0	0	1	0	0
RET	5979	broad.mit.edu	37	10	43612101	43612101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:43612101G>A	uc001jal.2	+	12	2396	c.2206G>A	c.(2206-2208)GGA>AGA	p.G736R	RET_uc001jak.1_Missense_Mutation_p.G736R|RET_uc010qez.1_Missense_Mutation_p.G482R	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	736	Protein kinase.|ATP (By similarity).|Cytoplasmic (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	AGGCGAATTTGGAAAAGTGGT	0.517		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				20	171					0	0	1	0	0
ZNF239	8187	broad.mit.edu	37	10	44052707	44052707	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:44052707C>T	uc001jaw.3	-	2	1474	c.821G>A	c.(820-822)AGG>AAG	p.R274K	ZNF239_uc001jax.3_Missense_Mutation_p.R274K|ZNF239_uc009xmj.2_Missense_Mutation_p.R274K|ZNF239_uc009xmk.2_Missense_Mutation_p.R274K	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	274	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						ACTTGAGCTCCTGGTGAAGCC	0.502													6	54					0	0	1	0	0
ZNF485	220992	broad.mit.edu	37	10	44104183	44104183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:44104183C>T	uc010qfc.1	+	3	340	c.146C>T	c.(145-147)TCT>TTT	p.S49F	ZNF485_uc010qfd.1_Intron	NM_145312	NP_660355	Q8NCK3	ZN485_HUMAN	zinc finger protein 485	49	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AATCTGGTGTCTGTGGGTGAG	0.507													4	50					0	0	1	0	0
ZNF485	220992	broad.mit.edu	37	10	44112244	44112244	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:44112244C>T	uc010qfc.1	+	5	947	c.753C>T	c.(751-753)TTC>TTT	p.F251F	ZNF485_uc010qfd.1_Silent_p.F160F	NM_145312	NP_660355	Q8NCK3	ZN485_HUMAN	zinc finger protein 485	251	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGAAAGCCTTCGCTCAGAATG	0.393													4	41					0	0	1	0	0
HNRNPA3P1	10151	broad.mit.edu	37	10	44285122	44285122	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:44285122G>A	uc010qfe.1	-	1	744	c.714C>T	c.(712-714)GGC>GGT	p.G238G		NR_002726				SubName: Full=cDNA FLJ52659, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=cDNA, FLJ79333, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=Heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a;												0						ttccatcacggccaaaattac	0.204													10	46					0	0	1	0	0
C10orf10	11067	broad.mit.edu	37	10	45473456	45473456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:45473456G>A	uc001jbr.3	-	2	313	c.23C>T	c.(22-24)TCC>TTC	p.S8F	RASSF4_uc001jbo.2_Intron|RASSF4_uc001jbp.2_Intron|RASSF4_uc009xmn.2_Intron|RASSF4_uc001jbq.2_Intron	NM_007021	NP_008952	Q9NTK1	DEPP_HUMAN	fasting-induced protein	8						mitochondrion					0						ATGGGCCACGGAGAGCAGAAG	0.642													12	81					0	0	1	0	0
RASSF4	83937	broad.mit.edu	37	10	45487413	45487413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:45487413G>A	uc001jbo.2	+	10	1002	c.868G>A	c.(868-870)GAA>AAA	p.E290K	RASSF4_uc001jbp.2_Missense_Mutation_p.E321K|RASSF4_uc009xmn.2_Missense_Mutation_p.E220K|RASSF4_uc001jbq.2_Missense_Mutation_p.E187K|RASSF4_uc001jbt.2_Missense_Mutation_p.E247K	NM_032023	NP_114412	Q9H2L5	RASF4_HUMAN	Ras association domain family 4	290	SARAH.				cell cycle|signal transduction		protein binding			large_intestine(1)	1						AAAATTAAAAGAAGAGGAAGA	0.388													9	73					0	0	1	0	0
ALOX5	240	broad.mit.edu	37	10	45877970	45877970	+	Missense_Mutation	SNP	G	A	A	rs143978950		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:45877970G>A	uc001jce.2	+	2	289	c.190G>A	c.(190-192)GAG>AAG	p.E64K	ALOX5_uc009xmt.2_Missense_Mutation_p.E64K|ALOX5_uc010qfg.1_Missense_Mutation_p.E64K	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	64	PLAT.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	GGAACTGGGCGAGATCCAGCT	0.532													7	64					0	0	1	0	0
ANUBL1	93550	broad.mit.edu	37	10	46122396	46122396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:46122396G>A	uc001jcp.3	-	7	1117	c.875C>T	c.(874-876)TCC>TTC	p.S292F	ANUBL1_uc001jcl.3_5'UTR|ANUBL1_uc001jcm.3_Missense_Mutation_p.S292F|ANUBL1_uc009xmu.2_Missense_Mutation_p.S218F|ANUBL1_uc001jcn.3_Missense_Mutation_p.S218F|ANUBL1_uc001jco.3_Intron	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	292							zinc ion binding				0						TCCATTCCTGGAGATTTCGGG	0.448													8	46					0	0	1	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999943	46999943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:46999943G>A	uc001jec.2	+	3	1198	c.1063G>A	c.(1063-1065)GAA>AAA	p.E355K	GPRIN2_uc010qfq.1_Missense_Mutation_p.E118K	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	355											0						TCCGTCCCTGGAAGCGCCTGC	0.682													9	109					0	0	1	0	0
PPYR1	5540	broad.mit.edu	37	10	47087593	47087593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:47087593G>A	uc001jee.2	+	3	1229	c.810G>A	c.(808-810)ATG>ATA	p.M270I	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.M270I	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	270	Helical; Name=6; (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						TGGTGGTGATGGTGGTGGCCT	0.602													5	96					0	0	1	0	0
FAM21B	55747	broad.mit.edu	37	10	47909221	47909221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:47909221C>T	uc009xni.2	+	10	791	c.791C>T	c.(790-792)TCG>TTG	p.S264L	FAM21B_uc001jep.3_Missense_Mutation_p.S159L	NM_018232	NP_060702	Q5SNT6	FA21B_HUMAN	hypothetical protein LOC55747	264					retrograde transport, endosome to Golgi	early endosome membrane|WASH complex				ovary(1)	1						GAGGACTTCTCGCCATTTGGC	0.527													25	130					0	0	1	0	0
ZNF488	118738	broad.mit.edu	37	10	48371143	48371143	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:48371143G>A	uc001jex.2	+	2	773	c.611G>A	c.(610-612)TGG>TAG	p.W204*	ZNF488_uc001jey.2_Nonsense_Mutation_p.W97*	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	204					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTCGCTTGTTGGGGTCGACTT	0.542													14	89					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48390628	48390628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:48390628C>T	uc001jez.2	-	1	364	c.250G>A	c.(250-252)GAT>AAT	p.D84N		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	84	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	AGGCGAGGATCGTTCAGGGAG	0.617													7	98					0	0	1	0	0
GDF2	2658	broad.mit.edu	37	10	48416352	48416352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:48416352C>T	uc001jfa.1	-	1	505	c.342G>A	c.(340-342)ATG>ATA	p.M114I		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	114					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						CCCTACCTTCCATGCTGAAGC	0.468													6	64					0	0	1	0	0
GDF2	2658	broad.mit.edu	37	10	48416420	48416420	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:48416420G>A	uc001jfa.1	-	1	437	c.274C>T	c.(274-276)CTG>TTG	p.L92L		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	92					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						CTGTTGTACAGGTCAATCATG	0.572													13	70					0	0	1	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49667911	49667911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:49667911C>T	uc001jgt.2	-	5	772	c.475G>A	c.(475-477)GAA>AAA	p.E159K	ARHGAP22_uc001jgs.2_Missense_Mutation_p.E69K|ARHGAP22_uc001jgu.2_Missense_Mutation_p.E175K|ARHGAP22_uc010qgl.1_Missense_Mutation_p.E116K|ARHGAP22_uc010qgm.1_Missense_Mutation_p.E165K|ARHGAP22_uc001jgv.2_5'UTR	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	159	Rho-GAP.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						TGGACTGTTTCCTCTAGGCGC	0.642													8	37					0	0	1	0	0
LRRC18	474354	broad.mit.edu	37	10	50121641	50121641	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:50121641A>T	uc001jhd.2	-	1	640	c.560T>A	c.(559-561)ATA>AAA	p.I187K	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Missense_Mutation_p.I187K	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	187	LRR 7.					cytoplasm				ovary(1)|pancreas(1)	2						GTCTATGAATATTTCCGACTC	0.502													13	56					0	0	1	0	0
C10orf72	196740	broad.mit.edu	37	10	50294062	50294062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:50294062G>A	uc001jhf.2	-	3	493	c.464C>T	c.(463-465)TCC>TTC	p.S155F		NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	155	Ig-like.|Extracellular (Potential).					integral to membrane|plasma membrane					0						AGCTTTGAGGGAAATGACTGA	0.269													4	31					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50531867	50531867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:50531867C>T	uc010qgp.1	+	3	1616	c.1277C>T	c.(1276-1278)GCT>GTT	p.A426V		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	426											0						GAAAACAATGCTCTTGACCTG	0.463													8	76					0	0	1	0	0
DRGX	644168	broad.mit.edu	37	10	50594776	50594776	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:50594776G>A	uc010qgq.1	-	4	378	c.378C>T	c.(376-378)CCC>CCT	p.P126P		NM_001080520	NP_001073989	A6NNA5	DRGX_HUMAN	dorsal root ganglia homeobox	126					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGTCCCCAGGGGGCGGGGAGT	0.657													11	71					0	0	1	0	0
ERCC6	2074	broad.mit.edu	37	10	50678838	50678838	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:50678838G>A	uc001jhs.3	-	18	3322	c.3168C>T	c.(3166-3168)TTC>TTT	p.F1056F	ERCC6_uc009xod.2_Silent_p.F216F|ERCC6_uc010qgr.1_Silent_p.F426F|ERCC6_uc001jhr.3_Silent_p.F424F	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	1056					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						TAGAAGCAGGGAACTTCTTGC	0.418								Direct_reversal_of_damage|NER					6	75					0	0	1	0	0
CHAT	1103	broad.mit.edu	37	10	50833529	50833529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:50833529C>T	uc001jhz.2	+	6	916	c.763C>T	c.(763-765)CCC>TCC	p.P255S	CHAT_uc001jhv.1_Missense_Mutation_p.P137S|CHAT_uc001jhx.1_Missense_Mutation_p.P137S|CHAT_uc001jhy.1_Missense_Mutation_p.P137S|CHAT_uc001jia.2_Missense_Mutation_p.P137S|CHAT_uc010qgs.1_Missense_Mutation_p.P137S	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	255					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	CCACTCCATTCCCACTGACTG	0.572													6	24					0	0	1	0	0
C10orf53	282966	broad.mit.edu	37	10	50901911	50901911	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:50901911C>T	uc001jib.2	+	2	249	c.189C>T	c.(187-189)TTC>TTT	p.F63F	CHAT_uc010qgs.1_3'UTR|C10orf53_uc001jic.1_Silent_p.F63F|C10orf53_uc001jid.1_Silent_p.F63F	NM_001042427	NP_001035892	Q8N6V4	CJ053_HUMAN	chromosome 10 open reading frame 53 isoform b	63											0		all_neural(218;0.107)				AAGTCATCTTCCACTGCAACA	0.473													8	61					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50944432	50944432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:50944432C>T	uc001jie.2	-	21	2867	c.2725G>A	c.(2725-2727)GAG>AAG	p.E909K	OGDHL_uc009xog.2_Missense_Mutation_p.E936K|OGDHL_uc010qgt.1_Missense_Mutation_p.E852K|OGDHL_uc010qgu.1_Missense_Mutation_p.E700K	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	909					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GCCACTTTCTCCTCCAGGTCC	0.632													6	121					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50946068	50946068	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:50946068G>A	uc001jie.2	-	19	2584	c.2442C>T	c.(2440-2442)ATC>ATT	p.I814I	OGDHL_uc009xog.2_Silent_p.I841I|OGDHL_uc010qgt.1_Silent_p.I757I|OGDHL_uc010qgu.1_Silent_p.I605I	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	814					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						AGTTGACCACGATCCAGTTGC	0.622													8	210					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50960190	50960190	+	Missense_Mutation	SNP	G	A	A	rs150734131	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:50960190G>A	uc001jie.2	-	5	725	c.583C>T	c.(583-585)CGG>TGG	p.R195W	OGDHL_uc009xog.2_Missense_Mutation_p.R222W|OGDHL_uc010qgt.1_Missense_Mutation_p.R138W|OGDHL_uc010qgu.1_5'UTR|OGDHL_uc009xoh.2_5'UTR	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	195					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TCCAGGCGCCGAATGATCTCC	0.562													7	61					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50960763	50960763	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:50960763C>T	uc001jie.2	-	4	541	c.399G>A	c.(397-399)CAG>CAA	p.Q133Q	OGDHL_uc009xog.2_Silent_p.Q160Q|OGDHL_uc010qgt.1_Silent_p.Q76Q|OGDHL_uc010qgu.1_5'UTR|OGDHL_uc009xoh.2_5'UTR	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	133					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GGGGGTCCAGCTGGGCCACAT	0.607													12	80					0	0	1	0	0
AGAP8	728404	broad.mit.edu	37	10	51225510	51225510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:51225510G>A	uc001jij.2	-	7	1598	c.1472C>T	c.(1471-1473)TCC>TTC	p.S491F	PARG_uc001jih.2_Intron|PARG_uc001jif.2_Intron|PARG_uc001jig.2_Intron|PARG_uc010qgv.1_Intron|PARG_uc009xoi.2_Intron|PARG_uc010qgw.1_Intron|PARG_uc009xoj.2_Intron|PARG_uc010qgx.1_Intron|AGAP8_uc009xom.2_Missense_Mutation_p.S406F|AGAP8_uc001jik.2_Missense_Mutation_p.S475F|AGAP8_uc010qgy.1_Missense_Mutation_p.S514F|uc001jil.1_5'Flank	NM_001077686	NP_001071154	Q5SRD3	AGAP8_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	491	Arf-GAP.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						TCGCACACGGGAAAGGCGGGT	0.527													12	146					0	0	1	0	0
AGAP6	414189	broad.mit.edu	37	10	51769545	51769545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:51769545C>T	uc001jix.3	+	8	2058	c.1660C>T	c.(1660-1662)CCC>TCC	p.P554S		NM_001077665	NP_001071133	Q5VW22	AGAP6_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	554					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			skin(1)	1						GCAGACAAAACCCTCAGAAAA	0.532													16	115					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	51808081	51808081	+	RNA	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:51808081C>A	uc001jiz.1	-	6		c.1772G>T								Homo sapiens cDNA FLJ31813 fis, clone NT2RI2009517.																		GCTGTACGCCCAAAAAGATTA	0.408													15	113					6.72482e-11	6.82468e-11	1	1	0
Unknown	0	broad.mit.edu	37	10	51821282	51821282	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:51821282G>A	uc001jiz.1	-	2		c.1353C>T								Homo sapiens cDNA FLJ31813 fis, clone NT2RI2009517.																		CCACTGAACAGGCCACCTCCA	0.547													20	134					0	0	1	0	0
SGMS1	259230	broad.mit.edu	37	10	52103372	52103372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:52103372G>A	uc001jje.2	-	7	1457	c.503C>T	c.(502-504)CCA>CTA	p.P168L	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Missense_Mutation_p.P168L|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	174					apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						GTCCGGTAGTGGAGGCTGCAC	0.458													4	23					0	0	1	0	0
SGMS1	259230	broad.mit.edu	37	10	52103437	52103437	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:52103437G>A	uc001jje.2	-	7	1392	c.438C>T	c.(436-438)TTC>TTT	p.F146F	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Silent_p.F146F|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	152	Helical; (Potential).				apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						TGGTGAGAACGAAACAGGAAA	0.502													6	38					0	0	1	0	0
MBL2	4153	broad.mit.edu	37	10	54528164	54528164	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:54528164G>A	uc001jjt.2	-	4	545	c.480C>T	c.(478-480)GCC>GCT	p.A160A		NM_000242	NP_000233	P11226	MBL2_HUMAN	soluble mannose-binding lectin precursor	160	C-type lectin.				acute-phase response|complement activation, classical pathway|complement activation, lectin pathway|defense response to Gram-positive bacterium|negative regulation of growth of symbiont in host|opsonization|response to oxidative stress	collagen|extracellular space	bacterial cell surface binding|calcium-dependent protein binding|eukaryotic cell surface binding|mannose binding|receptor binding			ovary(1)	1						TGGCCACAGAGGCCTGGAACT	0.498													4	61					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55570420	55570420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:55570420C>T	uc010qhs.1	-	36	4809	c.4414G>A	c.(4414-4416)GAA>AAA	p.E1472K	PCDH15_uc010qhq.1_Missense_Mutation_p.E1465K|PCDH15_uc010qhr.1_Missense_Mutation_p.E1460K|PCDH15_uc010qht.1_Missense_Mutation_p.E1465K|PCDH15_uc010qhu.1_Missense_Mutation_p.M1483I	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGAGGCATTTCATACCTGTAA	0.418										HNSCC(58;0.16)			7	70					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55955469	55955469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:55955469C>T	uc001jju.1	-	11	1674	c.1279G>A	c.(1279-1281)GTA>ATA	p.V427I	PCDH15_uc010qhq.1_Missense_Mutation_p.V432I|PCDH15_uc010qhr.1_Missense_Mutation_p.V427I|PCDH15_uc010qhs.1_Missense_Mutation_p.V432I|PCDH15_uc010qht.1_Missense_Mutation_p.V427I|PCDH15_uc010qhu.1_Missense_Mutation_p.V427I|PCDH15_uc001jjv.1_Missense_Mutation_p.V405I|PCDH15_uc010qhv.1_Missense_Mutation_p.V427I|PCDH15_uc010qhw.1_Missense_Mutation_p.V390I|PCDH15_uc010qhx.1_Missense_Mutation_p.V427I|PCDH15_uc010qhy.1_Missense_Mutation_p.V432I|PCDH15_uc010qhz.1_Missense_Mutation_p.V427I|PCDH15_uc010qia.1_Missense_Mutation_p.V405I|PCDH15_uc010qib.1_Missense_Mutation_p.V405I|PCDH15_uc001jjw.2_Missense_Mutation_p.V427I	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	427	Cadherin 4.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TCCAGAGCTACTATTCTTAAA	0.363										HNSCC(58;0.16)			4	37					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	56089462	56089462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:56089462G>A	uc001jju.1	-	7	994	c.599C>T	c.(598-600)TCC>TTC	p.S200F	PCDH15_uc010qhq.1_Missense_Mutation_p.S205F|PCDH15_uc010qhr.1_Missense_Mutation_p.S200F|PCDH15_uc010qhs.1_Missense_Mutation_p.S205F|PCDH15_uc010qht.1_Missense_Mutation_p.S200F|PCDH15_uc010qhu.1_Missense_Mutation_p.S200F|PCDH15_uc001jjv.1_Missense_Mutation_p.S178F|PCDH15_uc010qhv.1_Missense_Mutation_p.S200F|PCDH15_uc010qhw.1_Intron|PCDH15_uc010qhx.1_Missense_Mutation_p.S200F|PCDH15_uc010qhy.1_Missense_Mutation_p.S205F|PCDH15_uc010qhz.1_Missense_Mutation_p.S200F|PCDH15_uc010qia.1_Missense_Mutation_p.S178F|PCDH15_uc010qib.1_Missense_Mutation_p.S178F|PCDH15_uc001jjw.2_Missense_Mutation_p.S200F	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	200	Extracellular (Potential).|Cadherin 2.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GGTGTCATTGGATGTCTGCAA	0.323										HNSCC(58;0.16)			3	9					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	56138562	56138562	+	Missense_Mutation	SNP	C	T	T	rs140716525	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:56138562C>T	uc001jju.1	-	4	693	c.298G>A	c.(298-300)GGA>AGA	p.G100R	PCDH15_uc010qhq.1_Missense_Mutation_p.G105R|PCDH15_uc010qhr.1_Missense_Mutation_p.G100R|PCDH15_uc010qhs.1_Missense_Mutation_p.G105R|PCDH15_uc010qht.1_Missense_Mutation_p.G100R|PCDH15_uc010qhu.1_Missense_Mutation_p.G100R|PCDH15_uc001jjv.1_Missense_Mutation_p.G78R|PCDH15_uc010qhv.1_Missense_Mutation_p.G100R|PCDH15_uc010qhw.1_Missense_Mutation_p.G100R|PCDH15_uc010qhx.1_Missense_Mutation_p.G100R|PCDH15_uc010qhy.1_Missense_Mutation_p.G105R|PCDH15_uc010qhz.1_Missense_Mutation_p.G100R|PCDH15_uc010qia.1_Missense_Mutation_p.G78R|PCDH15_uc010qib.1_Missense_Mutation_p.G78R|PCDH15_uc001jjw.2_Missense_Mutation_p.G100R	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	100	Cadherin 1.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				AGAACTCTTCCGGTGCTGTTC	0.358										HNSCC(58;0.16)			3	11					0	0	1	0	0
FAM13C	220965	broad.mit.edu	37	10	61083838	61083838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:61083838G>A	uc001jkn.2	-	5	487	c.353C>T	c.(352-354)TCA>TTA	p.S118L	FAM13C_uc001jko.2_Missense_Mutation_p.S118L|FAM13C_uc010qid.1_Missense_Mutation_p.S35L|FAM13C_uc010qie.1_Missense_Mutation_p.S35L|FAM13C_uc010qif.1_Missense_Mutation_p.S140L|FAM13C_uc001jkp.2_Missense_Mutation_p.S35L	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	118										ovary(2)	2						CTGACACTCTGACTGGCTGGA	0.478													8	30					0	0	1	0	0
FAM13C	220965	broad.mit.edu	37	10	61112093	61112093	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:61112093G>A	uc001jkn.2	-	4	395	c.261C>T	c.(259-261)TTC>TTT	p.F87F	FAM13C_uc001jko.2_Silent_p.F87F|FAM13C_uc010qid.1_Silent_p.F4F|FAM13C_uc010qie.1_Silent_p.F4F|FAM13C_uc010qif.1_Silent_p.F109F|FAM13C_uc001jkp.2_Silent_p.F4F	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	87										ovary(2)	2						TCCTGGACTTGAAGTTGCCCA	0.592													14	72					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61946494	61946494	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:61946494C>T	uc001jky.2	-	17	2256	c.2064G>A	c.(2062-2064)GCG>GCA	p.A688A	ANK3_uc010qih.1_Silent_p.A671A|ANK3_uc001jkz.3_Silent_p.A682A|ANK3_uc001jlb.1_Silent_p.A217A|ANK3_uc001jlc.1_Silent_p.A349A	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	688	ANK 19.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GGTTCACATTCGCATTTCTAC	0.507													4	20					0	0	1	0	0
LRRTM3	347731	broad.mit.edu	37	10	68687033	68687033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:68687033G>A	uc001jmz.1	+	2	909	c.359G>A	c.(358-360)AGA>AAA	p.R120K	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Missense_Mutation_p.R120K	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	120	LRR 3.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						AGTTCCAATAGAATCTCCTAT	0.383													6	82					0	0	1	0	0
DNAJC12	56521	broad.mit.edu	37	10	69565524	69565524	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:69565524C>A	uc001jnb.2	-	4	487	c.319G>T	c.(319-321)GGT>TGT	p.G107C		NM_021800	NP_068572	Q9UKB3	DJC12_HUMAN	J domain containing protein 1 isoform a	107					protein folding		heat shock protein binding|unfolded protein binding			breast(1)	1						TCTTTTTTACCTCTGACAACC	0.303													8	47					0.000157383	0.000159026	1	1	0
MYPN	84665	broad.mit.edu	37	10	69957191	69957191	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:69957191G>A	uc001jnm.3	+	17	3426	c.3241G>A	c.(3241-3243)GAT>AAT	p.D1081N	MYPN_uc001jnn.3_Missense_Mutation_p.D806N|MYPN_uc001jno.3_Missense_Mutation_p.D1081N|MYPN_uc009xpt.2_Missense_Mutation_p.D1081N|MYPN_uc010qit.1_Missense_Mutation_p.D787N|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	1081	Ig-like 4.|Interaction with ACTN.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						GGCTCCTGGGGATATGGTAGC	0.493													7	53					0	0	1	0	0
SLC25A16	8034	broad.mit.edu	37	10	70263427	70263427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:70263427G>A	uc001joi.2	-	4	835	c.383C>T	c.(382-384)TCA>TTA	p.S128L	SLC25A16_uc010qix.1_5'UTR|SLC25A16_uc010qiy.1_Missense_Mutation_p.S30L|SLC25A16_uc001joj.2_Missense_Mutation_p.S30L	NM_152707	NP_689920	P16260	GDC_HUMAN	solute carrier family 25, member 16	128	Solcar 2.				coenzyme biosynthetic process|pantothenate metabolic process	integral to membrane|mitochondrial inner membrane	binding|solute:solute antiporter activity				0						CACATGACCTGAAATTCCCAG	0.289													19	77					0	0	1	0	0
TET1	80312	broad.mit.edu	37	10	70333650	70333650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:70333650C>T	uc001jok.3	+	2	2060	c.1555C>T	c.(1555-1557)CCT>TCT	p.P519S		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	519					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						CCCATTAGCCCCTGAGAGAGG	0.483													4	38					0	0	1	0	0
TET1	80312	broad.mit.edu	37	10	70446316	70446316	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:70446316C>T	uc001jok.3	+	11	5761	c.5256C>T	c.(5254-5256)CCC>CCT	p.P1752P		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1752					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						AGCCTGTTCCCCGTTCTGGAA	0.502													6	67					0	0	1	0	0
CCAR1	55749	broad.mit.edu	37	10	70502258	70502258	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:70502258C>T	uc001joo.2	+	6	569	c.450C>T	c.(448-450)TTC>TTT	p.F150F	CCAR1_uc001jol.1_RNA|CCAR1_uc001jom.1_5'UTR|CCAR1_uc009xpx.1_Silent_p.F124F|CCAR1_uc001jon.1_Silent_p.F96F|CCAR1_uc010qiz.1_Silent_p.F135F|CCAR1_uc010qja.1_Silent_p.F135F|CCAR1_uc010qjb.1_RNA	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1	150					apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			ovary(6)|large_intestine(1)	7						AGCGTGTTTTCACAGGGGTGG	0.433													9	67					0	0	1	0	0
DDX21	9188	broad.mit.edu	37	10	70730013	70730013	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:70730013C>T	uc001jov.1	+	8	1383	c.1293C>T	c.(1291-1293)ATC>ATT	p.I431I	DDX21_uc001jow.1_Silent_p.I363I	NM_004728	NP_004719	Q9NR30	DDX21_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	431	Helicase C-terminal.					nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)	3						GGGATGTCATCCGAGTATATA	0.423													4	36					0	0	1	0	0
TSPAN15	23555	broad.mit.edu	37	10	71265942	71265942	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:71265942C>T	uc001jpo.1	+	7	806	c.681C>T	c.(679-681)TTC>TTT	p.F227F		NM_012339	NP_036471	O95858	TSN15_HUMAN	transmembrane 4 superfamily member 15	227	Extracellular (Potential).					integral to plasma membrane|membrane fraction					0						TCATCTGGTTCATGGACAACT	0.592													5	56					0	0	1	0	0
C10orf35	219738	broad.mit.edu	37	10	71392759	71392759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:71392759C>T	uc001jpq.3	+	4	480	c.310C>T	c.(310-312)CGT>TGT	p.R104C		NM_145306	NP_660349	Q96D05	CJ035_HUMAN	hypothetical protein LOC219738	104	Helical; (Potential).					integral to membrane				ovary(1)|skin(1)	2						GCTTGGTGTTCGTGGCCTCCT	0.587													7	109					0	0	1	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72462173	72462173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:72462173G>A	uc001jrh.2	+	3	628	c.628G>A	c.(628-630)GAG>AAG	p.E210K	ADAMTS14_uc001jrg.2_Missense_Mutation_p.E210K	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	210					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						GTACCGCCGGGAGGCCGTCCA	0.627													5	66					0	0	1	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72468481	72468481	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:72468481C>T	uc001jrh.2	+	4	817	c.817C>T	c.(817-819)CGC>TGC	p.R273C	ADAMTS14_uc001jrg.2_Missense_Mutation_p.R273C	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	273	Peptidase M12B.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						CTCGGTGGTTCGCTTCCATGG	0.617													12	88					0	0	1	0	0
C10orf27	219793	broad.mit.edu	37	10	72532279	72532279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:72532279C>T	uc001jrj.1	-	10	1351	c.961G>A	c.(961-963)GAA>AAA	p.E321K	C10orf27_uc010qjm.1_Missense_Mutation_p.E322K|C10orf27_uc009xqh.1_RNA|C10orf27_uc010qjn.1_Missense_Mutation_p.E320K	NM_152710	NP_689923	Q96M53	SPATL_HUMAN	stromal protein associated with thymii and lymph	321					cell differentiation|multicellular organismal development|spermatogenesis	cytosol				skin(1)	1						CCTGGTTTTTCGCTTTTTGTA	0.488													5	59					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73270725	73270725	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:73270725C>T	uc001jrx.3	+	5	680	c.303C>T	c.(301-303)TTC>TTT	p.F101F	CDH23_uc001jrw.3_Silent_p.F101F|CDH23_uc001jrv.2_Silent_p.F96F|CDH23_uc009xql.2_Silent_p.F146F	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	101	Cadherin 1.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						AGTCAGAGTTCACCGTGGAGT	0.622													5	97					0	0	1	0	0
C10orf54	64115	broad.mit.edu	37	10	73511582	73511582	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:73511582G>A	uc001jsd.2	-	6	882	c.741C>T	c.(739-741)GCC>GCT	p.A247A	CDH23_uc001jrx.3_Intron|C10orf54_uc001jse.2_Silent_p.A115A|C10orf54_uc009xqm.2_Silent_p.A85A	NM_022153	NP_071436	Q9H7M9	GI24_HUMAN	platelet receptor Gi24 precursor	247	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)|central_nervous_system(1)	3						CAGGTGGTGAGGCTTCAAAGC	0.602													7	54					0	0	1	0	0
TTC18	118491	broad.mit.edu	37	10	75082833	75082833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:75082833G>A	uc009xrc.2	-	10	1131	c.1010C>T	c.(1009-1011)TCG>TTG	p.S337L	TTC18_uc001jty.2_Missense_Mutation_p.S337L|TTC18_uc009xrd.1_Missense_Mutation_p.S145L	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	337							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					ACCATGAAACGAAAGCTGAGC	0.318													5	52					0	0	1	0	0
ZMYND17	118490	broad.mit.edu	37	10	75186374	75186374	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:75186374G>A	uc001jud.2	-	4	559	c.493C>T	c.(493-495)CTG>TTG	p.L165L	ZMYND17_uc001juc.2_Silent_p.L165L|ZMYND17_uc009xrh.2_Silent_p.L188L|ZMYND17_uc009xrg.2_Silent_p.F87F	NM_001024593	NP_001019764	Q4VC12	ZMY17_HUMAN	zinc finger, MYND domain containing 17	165							zinc ion binding			ovary(1)	1	Prostate(51;0.0119)					CCTGTGACCAGAAGCCATTCC	0.463													10	141					0	0	1	0	0
ZMYND17	118490	broad.mit.edu	37	10	75187483	75187483	+	Nonsense_Mutation	SNP	G	A	A	rs138597910	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:75187483G>A	uc001jud.2	-	3	331	c.265C>T	c.(265-267)CGA>TGA	p.R89*	ZMYND17_uc001juc.2_Nonsense_Mutation_p.R89*|ZMYND17_uc009xrh.2_Nonsense_Mutation_p.R112*|ZMYND17_uc009xrg.2_Silent_p.F11F	NM_001024593	NP_001019764	Q4VC12	ZMY17_HUMAN	zinc finger, MYND domain containing 17	89							zinc ion binding			ovary(1)	1	Prostate(51;0.0119)					TGAGGACATCGAAATCCAAAG	0.488													4	45					0	0	1	0	0
PPP3CB	5532	broad.mit.edu	37	10	75239252	75239252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:75239252G>A	uc001jue.2	-	2	244	c.109C>T	c.(109-111)CGC>TGC	p.R37C	PPP3CB_uc001juf.2_Missense_Mutation_p.R37C|PPP3CB_uc001jug.2_Missense_Mutation_p.R37C|PPP3CB_uc001jui.2_Missense_Mutation_p.R37C|PPP3CB_uc001juh.2_5'UTR	NM_021132	NP_066955	P16298	PP2BB_HUMAN	protein phosphatase 3, catalytic subunit, beta	37	Catalytic.									skin(1)	1	Prostate(51;0.0119)					GATGTCAAGCGATGTGTTGGG	0.358													7	31					0	0	1	0	0
USP54	159195	broad.mit.edu	37	10	75283383	75283383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:75283383G>A	uc001juo.2	-	15	2337	c.2320C>T	c.(2320-2322)CAT>TAT	p.H774Y	USP54_uc010qkk.1_5'UTR|USP54_uc001juk.2_5'UTR|USP54_uc001jul.2_5'UTR|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA|USP54_uc001jup.2_Missense_Mutation_p.H774Y	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	774					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					CGGCTAGGATGAGGGTTAAAC	0.498													19	183					0	0	1	0	0
AGAP5	729092	broad.mit.edu	37	10	75457446	75457446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:75457446G>A	uc009xri.2	-	1	109	c.68C>T	c.(67-69)TCG>TTG	p.S23L	AGAP5_uc001juu.3_5'UTR	NM_001144000	NP_001137472	A6NIR3	AGAP5_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	23					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						GGGACACACCGACCCCTGTTG	0.607													10	110					0	0	1	0	0
MYST4	23522	broad.mit.edu	37	10	76780392	76780392	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:76780392C>T	uc001jwn.1	+	14	3175	c.2682C>T	c.(2680-2682)CTC>CTT	p.L894L	MYST4_uc001jwm.1_Silent_p.L602L|MYST4_uc001jwo.1_Silent_p.L602L|MYST4_uc001jwp.1_Silent_p.L711L	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	894	Catalytic.|Interaction with BRPF1.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					AAAAGCCTCTCTCCGATCTGG	0.493			T	CREBBP	AML								3	22					0	0	1	0	0
DLG5	9231	broad.mit.edu	37	10	79571762	79571762	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:79571762G>A	uc001jzk.2	-	22	4312	c.4242C>T	c.(4240-4242)ATC>ATT	p.I1414I	DLG5_uc001jzi.2_Silent_p.I169I|DLG5_uc001jzj.2_Silent_p.I829I|DLG5_uc009xru.1_RNA	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1414	PDZ 3.				cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			ACTGCTGCCCGATGATGAGCC	0.657													5	62					0	0	1	0	0
DLG5	9231	broad.mit.edu	37	10	79579741	79579741	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:79579741G>A	uc001jzk.2	-	16	3508	c.3438C>T	c.(3436-3438)TCC>TCT	p.S1146S	DLG5_uc001jzi.2_5'UTR|DLG5_uc001jzj.2_Silent_p.S561S|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Silent_p.S750S	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1146					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			GGAGCTCCGGGGAGAGTTCTC	0.547													4	89					0	0	1	0	0
DLG5	9231	broad.mit.edu	37	10	79581018	79581018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:79581018G>A	uc001jzk.2	-	15	3294	c.3224C>T	c.(3223-3225)TCC>TTC	p.S1075F	DLG5_uc001jzi.2_5'Flank|DLG5_uc001jzj.2_Intron|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Missense_Mutation_p.S679F	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1075					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			GTAGTAGCTGGAAGCAATGCG	0.652													4	68					0	0	1	0	0
POLR3A	11128	broad.mit.edu	37	10	79777367	79777367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:79777367G>A	uc001jzn.2	-	10	1491	c.1397C>T	c.(1396-1398)CCC>CTC	p.P466L		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	466					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			GTGCAGCGAGGGCTGCCGATT	0.443													10	47					0	0	1	0	0
ZMIZ1	57178	broad.mit.edu	37	10	81058166	81058166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:81058166C>T	uc001kaf.2	+	15	2067	c.1495C>T	c.(1495-1497)CCC>TCC	p.P499S	ZMIZ1_uc001kag.2_Missense_Mutation_p.P375S	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	499	Pro-rich.				transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CCTCCAGCCTCCCAGGCCGGT	0.602													25	160					0	0	1	0	0
SFTPD	6441	broad.mit.edu	37	10	81701193	81701193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:81701193G>A	uc001kbh.2	-	6	671	c.628C>T	c.(628-630)CCT>TCT	p.P210S	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	210	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			TTGTCTCCAGGAATGCCTTTG	0.617													4	66					0	0	1	0	0
MAT1A	4143	broad.mit.edu	37	10	82033635	82033635	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:82033635A>C	uc001kbw.2	-	9	1345	c.1090T>G	c.(1090-1092)TTG>GTG	p.L364V		NM_000429	NP_000420	Q00266	METK1_HUMAN	methionine adenosyltransferase I, alpha	364					methylation|S-adenosylmethionine biosynthetic process|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0			Colorectal(32;0.229)		L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	TTCAAGTCCAAATCCCTGCAT	0.498													8	90					0	0	1	0	0
MAT1A	4143	broad.mit.edu	37	10	82036269	82036269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:82036269C>T	uc001kbw.2	-	6	886	c.631G>A	c.(631-633)GAA>AAA	p.E211K		NM_000429	NP_000420	Q00266	METK1_HUMAN	methionine adenosyltransferase I, alpha	211					methylation|S-adenosylmethionine biosynthetic process|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0			Colorectal(32;0.229)		L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	GTGATGTCTTCGTTGTGCTGC	0.582													8	106					0	0	1	0	0
CDHR1	92211	broad.mit.edu	37	10	85964350	85964350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:85964350G>A	uc001kcv.2	+	9	851	c.851G>A	c.(850-852)AGC>AAC	p.S284N	CDHR1_uc001kcw.2_Missense_Mutation_p.S284N|CDHR1_uc009xst.2_Missense_Mutation_p.S43N	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	284	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						ATTCTCTACAGCCTTGTAAAT	0.398													4	75					0	0	1	0	0
LRIT1	26103	broad.mit.edu	37	10	85997355	85997356	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:85997355_85997356GG>AA	uc001kcz.1	-	2	231_232	c.209_210CC>TT	c.(208-210)GCC>GTT	p.A70V		NM_015613	NP_056428	Q9P2V4	LRIT1_HUMAN	retina specific protein PAL	70	LRR 1.|Lumenal (Potential).					integral to endoplasmic reticulum membrane					0						CCCTGCGTATGGCCGTCCGCTC	0.673													6	81					0	0	1	0	0
RGR	5995	broad.mit.edu	37	10	86008712	86008712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:86008712C>T	uc001kdc.1	+	3	309	c.271C>T	c.(271-273)CAC>TAC	p.H91Y	RGR_uc001kdb.1_Missense_Mutation_p.S78L|RGR_uc001kdd.1_Missense_Mutation_p.H95Y|RGR_uc001kde.1_Missense_Mutation_p.H91Y	NM_001012720	NP_001012738	P47804	RGR_HUMAN	retinal G-protein coupled receptor isoform 2	91	Extracellular (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity|protein binding			ovary(1)	1						CTGCCAGGCTCACGGCTTCCA	0.627													5	54					0	0	1	0	0
RGR	5995	broad.mit.edu	37	10	86014139	86014139	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:86014139C>T	uc001kdc.1	+	5	608	c.570C>T	c.(568-570)TTC>TTT	p.F190F	RGR_uc001kdd.1_Silent_p.F194F|RGR_uc001kde.1_Silent_p.F190F	NM_001012720	NP_001012738	P47804	RGR_HUMAN	retinal G-protein coupled receptor isoform 2	190	Helical; Name=5; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity|protein binding			ovary(1)	1						TGCCCCTCTTCATCACGATCA	0.493													6	84					0	0	1	0	0
RGR	5995	broad.mit.edu	37	10	86018296	86018296	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:86018296G>A	uc001kdc.1	+	7	815	c.777G>A	c.(775-777)ACG>ACA	p.T259T	RGR_uc001kdd.1_Silent_p.T263T|RGR_uc001kde.1_Silent_p.T221T	NM_001012720	NP_001012738	P47804	RGR_HUMAN	retinal G-protein coupled receptor isoform 2	259	Helical; Name=7; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity|protein binding			ovary(1)	1						TGGTGCCCACGATCAATGCCA	0.542													8	66					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87966204	87966204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:87966204G>A	uc001kdl.1	-	3	538	c.437C>T	c.(436-438)CCC>CTC	p.P146L	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	146	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	GAGGCGGACGGGTGGTCTCGA	0.622										Multiple Myeloma(13;0.14)			5	36					0	0	1	0	0
LDB3	11155	broad.mit.edu	37	10	88466428	88466429	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:88466428_88466429CC>TT	uc001kdv.2	+	7	1060_1061	c.1037_1038CC>TT	c.(1036-1038)GCC>GTT	p.A346V	LDB3_uc010qml.1_Intron|LDB3_uc010qmm.1_Intron|LDB3_uc001kdu.2_Intron|LDB3_uc009xsz.2_Intron	NM_007078	NP_009009	O75112	LDB3_HUMAN	LIM domain binding 3 isoform 1	346						cytoskeleton|perinuclear region of cytoplasm|pseudopodium	zinc ion binding			ovary(1)	1						ACTGCCATCGCCTCCGCCTCCA	0.688													6	38					0	0	1	0	0
MMRN2	79812	broad.mit.edu	37	10	88702255	88702255	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:88702255C>T	uc001kea.2	-	6	2413	c.2286G>A	c.(2284-2286)ATG>ATA	p.M762I	MMRN2_uc010qmn.1_Missense_Mutation_p.M405I|MMRN2_uc009xtb.2_Missense_Mutation_p.M719I	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor	762						extracellular space				large_intestine(1)	1						CGTTGGCTTCCATGAGCCCTT	0.602													9	105					0	0	1	0	0
AGAP11	119385	broad.mit.edu	37	10	88768968	88768968	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:88768968C>T	uc001kee.2	+	12	2163	c.959C>T	c.(958-960)TCC>TTC	p.S320F	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	320					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						AAAAGCAAGTCCCAGCTGACC	0.577													17	148					0	0	1	0	0
AGAP11	119385	broad.mit.edu	37	10	88769151	88769151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:88769151G>A	uc001kee.2	+	12	2346	c.1142G>A	c.(1141-1143)CGA>CAA	p.R381Q	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	381	Arf-GAP.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						TCCCGTGTGCGATCTCTGGAG	0.537													16	243					0	0	1	0	0
AGAP11	119385	broad.mit.edu	37	10	88769359	88769359	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:88769359C>T	uc001kee.2	+	12	2554	c.1350C>T	c.(1348-1350)TCC>TCT	p.S450S	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	450					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CTGAGCTGTCCCTGGGCCAGC	0.592													13	140					0	0	1	0	0
GLUD1	2746	broad.mit.edu	37	10	88819996	88819996	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:88819996G>A	uc001keh.2	-	9	1297	c.1200C>T	c.(1198-1200)ATC>ATT	p.I400I	GLUD1_uc001keg.2_Silent_p.I233I|GLUD1_uc010qmp.1_Silent_p.I267I	NM_005271	NP_005262	P00367	DHE3_HUMAN	glutamate dehydrogenase 1 precursor	400					glutamate biosynthetic process|glutamate catabolic process|positive regulation of insulin secretion	mitochondrial matrix	ADP binding|ATP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|identical protein binding|leucine binding|NAD+ binding				0					L-Glutamic Acid(DB00142)|NADH(DB00157)	CTTCAGCAATGATCTGCAAGA	0.453													7	107					0	0	1	0	0
PAPSS2	9060	broad.mit.edu	37	10	89503276	89503276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:89503276G>A	uc001kex.2	+	10	1617	c.1354G>A	c.(1354-1356)GAT>AAT	p.D452N	PAPSS2_uc001kew.2_Missense_Mutation_p.D457N	NM_004670	NP_004661	O95340	PAPS2_HUMAN	3'-phosphoadenosine 5'-phosphosulfate synthase 2	452	Adenylyl-sulfate kinase.				3'-phosphoadenosine 5'-phosphosulfate biosynthetic process|skeletal system development|sulfate assimilation|xenobiotic metabolic process	cytosol	adenylylsulfate kinase activity|ATP binding|protein binding|sulfate adenylyltransferase (ATP) activity			central_nervous_system(1)|skin(1)	2		Melanoma(5;0.019)|Colorectal(252;0.123)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00164)|Colorectal(12;0.000323)|COAD - Colon adenocarcinoma(12;0.00124)		CAAGGATGACGATGTGCCTCT	0.602													4	36					0	0	1	0	0
LIPF	8513	broad.mit.edu	37	10	90427414	90427414	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:90427414C>A	uc001kfg.1	+	3	360	c.194C>A	c.(193-195)CCT>CAT	p.P65H	LIPF_uc009xtk.2_Missense_Mutation_p.P65H|LIPF_uc001kfh.1_Missense_Mutation_p.P75H|LIPF_uc010qmt.1_Missense_Mutation_p.P75H|LIPF_uc010qmu.1_Missense_Mutation_p.P65H	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	65					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		AATAGAATTCCTTATGGGAAG	0.239													7	57					0.0381472	0.0384117	1	1	0
LIPF	8513	broad.mit.edu	37	10	90428507	90428507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:90428507C>T	uc001kfg.1	+	4	582	c.416C>T	c.(415-417)GCT>GTT	p.A139V	LIPF_uc009xtk.2_Missense_Mutation_p.A139V|LIPF_uc001kfh.1_Missense_Mutation_p.A116V|LIPF_uc010qmt.1_Missense_Mutation_p.A149V|LIPF_uc010qmu.1_Missense_Mutation_p.A106V	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	139					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		GAATTCTGGGCTTTCAGGTAA	0.423													3	22					0	0	1	0	0
LIPF	8513	broad.mit.edu	37	10	90438337	90438337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:90438337G>A	uc001kfg.1	+	10	1262	c.1096G>A	c.(1096-1098)GAG>AAG	p.E366K	LIPF_uc001kfh.1_Missense_Mutation_p.E343K|LIPF_uc010qmt.1_Missense_Mutation_p.E376K|LIPF_uc010qmu.1_Missense_Mutation_p.E333K	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	366					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		TTACCACAAGGAGATTCCTTT	0.418													5	45					0	0	1	0	0
ANKRD22	118932	broad.mit.edu	37	10	90582732	90582732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:90582732G>A	uc001kfj.3	-	6	910	c.542C>T	c.(541-543)TCC>TTC	p.S181F		NM_144590	NP_653191	Q5VYY1	ANR22_HUMAN	ankyrin repeat domain 22	181											0		Colorectal(252;0.0163)		Colorectal(12;6.29e-05)|COAD - Colon adenocarcinoma(12;7.69e-05)		TTCAATCTGGGAAAATTTTAA	0.393													9	84					0	0	1	0	0
ANKRD22	118932	broad.mit.edu	37	10	90588416	90588416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:90588416C>T	uc001kfj.3	-	3	589	c.221G>A	c.(220-222)AGA>AAA	p.R74K		NM_144590	NP_653191	Q5VYY1	ANR22_HUMAN	ankyrin repeat domain 22	74	ANK 2.										0		Colorectal(252;0.0163)		Colorectal(12;6.29e-05)|COAD - Colon adenocarcinoma(12;7.69e-05)		CAAGCAGGTTCTCTCTTTCTA	0.299													5	30					0	0	1	0	0
FAS	355	broad.mit.edu	37	10	90773985	90773985	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:90773985C>T	uc001kfr.2	+	9	1132	c.786C>T	c.(784-786)ATC>ATT	p.I262I	FAS_uc010qna.1_RNA|FAS_uc001kfs.2_3'UTR|FAS_uc001kft.2_Silent_p.I241I|FAS_uc010qnb.1_RNA|FAS_uc010qnc.1_RNA|FAS_uc001kfw.2_3'UTR|FAS_uc010qnd.1_RNA|FAS_uc010qne.1_RNA|FAS_uc009xtp.2_RNA	NM_000043	NP_000034	P25445	TNR6_HUMAN	tumor necrosis factor receptor superfamily,	262	Death.|Interaction with HIPK3 (By similarity).|Cytoplasmic (Potential).		I -> S (in ALPS1A).		activation of caspase activity|activation of pro-apoptotic gene products|anti-apoptosis|cellular response to mechanical stimulus|positive regulation of necrotic cell death	cytosol|extracellular region|integral to membrane|soluble fraction	identical protein binding|kinase binding			upper_aerodigestive_tract(1)|breast(1)	2		Colorectal(252;0.0161)		Colorectal(12;0.000136)|COAD - Colon adenocarcinoma(12;0.000193)		TAGATGAGATCAAGAATGACA	0.373									Autoimmune_Lymphoproliferative_syndrome_type_I				6	35					0	0	1	0	0
IFIT3	3437	broad.mit.edu	37	10	91098435	91098435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:91098435C>T	uc001kgf.2	+	2	252	c.23C>T	c.(22-24)TCC>TTC	p.S8F	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron|uc001kgd.2_Intron|IFIT3_uc001kgg.2_Missense_Mutation_p.S8F	NM_001549	NP_001540	O14879	IFIT3_HUMAN	interferon-induced protein with	8					type I interferon-mediated signaling pathway		protein binding			central_nervous_system(1)	1						ACCAAGAATTCCCTGGAGAAA	0.388													6	26					0	0	1	0	0
BTAF1	9044	broad.mit.edu	37	10	93773697	93773697	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:93773697T>A	uc001khr.2	+	32	4593	c.4495T>A	c.(4495-4497)TTT>ATT	p.F1499I		NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	1499					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				AGTACTACCGTTTCTTTTGAG	0.348													7	58					0	0	1	0	0
KIF11	3832	broad.mit.edu	37	10	94396969	94396969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:94396969C>T	uc001kic.2	+	15	2212	c.1904C>T	c.(1903-1905)TCA>TTA	p.S635L	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	635					blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						CTTCTAAGTTCACTGGAAATG	0.323													39	277					0	0	1	0	0
KIF11	3832	broad.mit.edu	37	10	94410215	94410215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:94410215G>A	uc001kic.2	+	21	3288	c.2980G>A	c.(2980-2982)GAG>AAG	p.E994K	KIF11_uc010qnq.1_RNA	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	994					blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						TCTAAGTCAAGAGCCATCTGT	0.438													23	283					0	0	1	0	0
EXOC6	54536	broad.mit.edu	37	10	94733976	94733976	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:94733976T>G	uc001kig.2	+	18	2006	c.1940T>G	c.(1939-1941)TTT>TGT	p.F647C	EXOC6_uc010qnr.1_Missense_Mutation_p.F663C|EXOC6_uc001kie.2_Missense_Mutation_p.F642C|EXOC6_uc009xub.2_Missense_Mutation_p.F646C|EXOC6_uc009xuc.2_Missense_Mutation_p.F544C|EXOC6_uc001kih.2_RNA|EXOC6_uc001kii.2_Missense_Mutation_p.F221C	NM_019053	NP_061926	Q8TAG9	EXOC6_HUMAN	SEC15-like 1 isoform a	647					protein transport|vesicle docking involved in exocytosis	exocyst				skin(1)	1		Colorectal(252;0.123)				TTTCAAGTGTTTACTCATTTG	0.313													18	237					0	0	1	0	0
LGI1	9211	broad.mit.edu	37	10	95552500	95552500	+	Silent	SNP	G	A	A	rs3083468		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:95552500G>A	uc001kjc.3	+	6	840	c.504G>A	c.(502-504)GTG>GTA	p.V168V	LGI1_uc010qnv.1_Silent_p.V120V|LGI1_uc001kjd.3_Silent_p.V168V|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_RNA	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	168					axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				TGTCTTTCAGGGACCTGAGGG	0.453													5	22					0	0	1	0	0
CYP2C18	1562	broad.mit.edu	37	10	96447668	96447668	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:96447668G>A	uc001kjv.3	+	2	636	c.310G>A	c.(310-312)GAA>AAA	p.E104K	CYP2C18_uc001kjw.3_Missense_Mutation_p.E104K|CYP2C19_uc009xus.1_5'Flank|CYP2C19_uc010qny.1_5'Flank	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	104					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		TCCAGTGGCTGAAAAAGTTAA	0.458													3	10					0	0	1	0	0
TCTN3	26123	broad.mit.edu	37	10	97443350	97443350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:97443350G>A	uc001klb.3	-	10	1376	c.1132C>T	c.(1132-1134)CCT>TCT	p.P378S	TCTN3_uc001kla.3_Missense_Mutation_p.P227S|TCTN3_uc010qoi.1_Missense_Mutation_p.P230S|TCTN3_uc001kld.2_Missense_Mutation_p.P396S|TCTN3_uc009xux.1_Missense_Mutation_p.P200S|TCTN3_uc009xuy.1_RNA	NM_015631	NP_056446	Q6NUS6	TECT3_HUMAN	tectonic 3 isoform a precursor	378	Extracellular (Potential).				apoptosis	integral to membrane					0		Colorectal(252;0.0815)		Epithelial(162;1.69e-07)|all cancers(201;5.63e-06)		CCACTTCTAGGACTGGTGAGA	0.463													6	58					0	0	1	0	0
ZNF518A	9849	broad.mit.edu	37	10	97917640	97917640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:97917640C>T	uc001klp.2	+	6	2418	c.1561C>T	c.(1561-1563)CTT>TTT	p.L521F	ZNF518A_uc001klo.1_Intron|ZNF518A_uc001klq.2_Missense_Mutation_p.L521F|ZNF518A_uc001klr.2_Missense_Mutation_p.L521F	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	521					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		ATCTTCTATACTTTCAGGGAA	0.323													8	61					0	0	1	0	0
BLNK	29760	broad.mit.edu	37	10	97987229	97987229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:97987229G>A	uc001kls.3	-	5	476	c.298C>T	c.(298-300)CCA>TCA	p.P100S	BLNK_uc001kme.3_Missense_Mutation_p.P18S|BLNK_uc001klt.3_Missense_Mutation_p.P18S|BLNK_uc009xvc.2_Intron|BLNK_uc001klu.3_Missense_Mutation_p.P18S|BLNK_uc001klv.3_Missense_Mutation_p.P100S|BLNK_uc001klw.3_RNA|BLNK_uc001klx.3_Missense_Mutation_p.P100S|BLNK_uc001kly.3_Missense_Mutation_p.P100S|BLNK_uc001klz.3_RNA|BLNK_uc001kma.3_Missense_Mutation_p.P100S|BLNK_uc001kmb.3_5'UTR|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_Missense_Mutation_p.P18S|BLNK_uc009xvd.2_RNA	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	100	Pro-rich.				B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		TGCTCTACTGGAGGCGGCTCG	0.602													11	123					0	0	1	0	0
DNTT	1791	broad.mit.edu	37	10	98079090	98079090	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:98079090C>T	uc001kmf.2	+	3	620	c.450C>T	c.(448-450)ATC>ATT	p.I150I	DNTT_uc001kmg.2_Silent_p.I150I	NM_004088	NP_004079	P04053	TDT_HUMAN	terminal deoxynucleotidyltransferase isoform 1	150					DNA modification	nucleus	DNA binding|DNA nucleotidylexotransferase activity|DNA-directed DNA polymerase activity|metal ion binding			ovary(1)	1		Colorectal(252;0.0815)|all_hematologic(284;0.224)		Epithelial(162;7.97e-08)|all cancers(201;1.89e-06)		TACAAAAGATCTCCCAGTATG	0.453													4	22					0	0	1	0	0
SLIT1	6585	broad.mit.edu	37	10	98803137	98803137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:98803137G>A	uc001kmw.2	-	19	2239	c.1987C>T	c.(1987-1989)CTC>TTC	p.L663F	SLIT1_uc009xvh.1_Missense_Mutation_p.L673F	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	663					axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		AGTGTGGAGAGGGACTGGAGG	0.647													12	137					0	0	1	0	0
SLIT1	6585	broad.mit.edu	37	10	98819908	98819908	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:98819908C>T	uc001kmw.2	-	10	1201	c.949G>A	c.(949-951)GAG>AAG	p.E317K	SLIT1_uc009xvh.1_Missense_Mutation_p.E317K	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	317	LRR 7.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		CCGTTCAGCTCCAGGCGTCTG	0.597													7	57					0	0	1	0	0
SLIT1	6585	broad.mit.edu	37	10	98917635	98917635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:98917635C>T	uc001kmw.2	-	4	605	c.353G>A	c.(352-354)CGA>CAA	p.R118Q	SLIT1_uc009xvh.1_Missense_Mutation_p.R118Q|ARHGAP19_uc001kmy.2_RNA|SLIT1_uc001kmz.2_Missense_Mutation_p.R118Q	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	118	LRR 3.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		CAGCTGGTTTCGGTTCAGTCG	0.418													12	150					0	0	1	0	0
RRP12	23223	broad.mit.edu	37	10	99139496	99139496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:99139496G>A	uc001knf.2	-	14	1704	c.1565C>T	c.(1564-1566)TCC>TTC	p.S522F	RRP12_uc009xvm.2_Missense_Mutation_p.S240F|RRP12_uc010qou.1_Missense_Mutation_p.S461F|RRP12_uc009xvn.2_Missense_Mutation_p.S422F	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	522						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		GAAATGAGGGGAGAGGCGCAG	0.602													12	36					0	0	1	0	0
ANKRD2	26287	broad.mit.edu	37	10	99340684	99340684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:99340684G>A	uc001knw.2	+	5	819	c.610G>A	c.(610-612)GGG>AGG	p.G204R	ANKRD2_uc009xvu.2_Missense_Mutation_p.G204R	NM_020349	NP_065082	Q9GZV1	ANKR2_HUMAN	ankyrin repeat domain 2 isoform a	204	ANK 2.				muscle contraction|muscle organ development		structural constituent of muscle				0		all_hematologic(284;1.95e-06)|Colorectal(252;0.0163)		Epithelial(162;1.18e-94)|all cancers(201;9.31e-86)|BRCA - Breast invasive adenocarcinoma(275;0.0233)|STAD - Stomach adenocarcinoma(243;0.181)|KIRC - Kidney renal clear cell carcinoma(50;0.206)|Kidney(138;0.241)		TCTAGATAATGGGGCCACTGT	0.592													3	17					0	0	1	0	0
MORN4	118812	broad.mit.edu	37	10	99377008	99377008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:99377008G>A	uc001kob.3	-	3	410	c.139C>T	c.(139-141)CTC>TTC	p.L47F	PI4K2A_uc010qoy.1_Intron|MORN4_uc001koc.3_Missense_Mutation_p.L105F|MORN4_uc001kod.3_3'UTR|MORN4_uc001koe.2_Missense_Mutation_p.L47F|uc001kof.1_5'Flank	NM_178832	NP_849154	Q8NDC4	MORN4_HUMAN	MORN repeat containing 4	47	MORN 2.										0						CCATTAAAGAGCCCATTCTCA	0.463													6	179					0	0	1	0	0
AVPI1	60370	broad.mit.edu	37	10	99439560	99439560	+	Missense_Mutation	SNP	C	T	T	rs150249445		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:99439560C>T	uc001koh.1	-	2	214	c.103G>A	c.(103-105)GAG>AAG	p.E35K	AVPI1_uc001koi.2_Missense_Mutation_p.E35K	NM_021732	NP_068378	Q5T686	AVPI1_HUMAN	vasopressin-induced protein, 32kDa	35					cell cycle					breast(1)	1		Colorectal(252;0.162)		Epithelial(162;8.37e-11)|all cancers(201;7.94e-09)		TGCAGCAGCTCGGCGTCCTGG	0.672													3	11					0	0	1	0	0
ZFYVE27	118813	broad.mit.edu	37	10	99517446	99517446	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:99517446C>T	uc001koo.2	+	12	1337	c.1137C>T	c.(1135-1137)TCC>TCT	p.S379S	ZFYVE27_uc001kon.2_Silent_p.S384S|ZFYVE27_uc001koq.2_Silent_p.S286S|ZFYVE27_uc010qpa.1_Silent_p.S254S|ZFYVE27_uc001kop.2_Silent_p.S372S|ZFYVE27_uc010qpb.1_Silent_p.S279S|ZFYVE27_uc010qpc.1_RNA|ZFYVE27_uc010qpd.1_Silent_p.S340S|ZFYVE27_uc001kol.1_Silent_p.S379S|ZFYVE27_uc001kom.1_Silent_p.S372S	NM_144588	NP_653189	Q5T4F4	ZFY27_HUMAN	zinc finger, FYVE domain containing 27 isoform	379	Extracellular (Potential).|FYVE-type.				cell death|nerve growth factor receptor signaling pathway|neuron projection development|protein localization in plasma membrane	axon|dendrite|endoplasmic reticulum membrane|growth cone membrane|integral to membrane|recycling endosome membrane	metal ion binding|protein binding			ovary(1)	1		Colorectal(252;0.0846)		Epithelial(162;7.08e-10)|all cancers(201;5.18e-08)		GATGCTGCTCCTTCAAGGTGC	0.597													24	101					0	0	1	0	0
GOLGA7B	401647	broad.mit.edu	37	10	99623813	99623813	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:99623813C>T	uc001kos.2	+	3	330	c.265C>T	c.(265-267)CTC>TTC	p.L89F		NM_001010917	NP_001010917	Q2TAP0	GOG7B_HUMAN	golgi autoantigen, golgin subfamily a, 7B	89						Golgi membrane					0						CTTCATCTTCCTCTGCATGGA	0.617													4	32					0	0	1	0	0
PYROXD2	84795	broad.mit.edu	37	10	100144800	100144800	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:100144800G>A	uc001kpc.2	-	15	1665	c.1579C>T	c.(1579-1581)CTG>TTG	p.L527L	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	527							oxidoreductase activity			central_nervous_system(1)	1						AGCTGGTCCAGGGACATGGCG	0.607													4	31					0	0	1	0	0
HPSE2	60495	broad.mit.edu	37	10	100904148	100904148	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:100904148G>A	uc001kpn.1	-	3	517	c.457C>T	c.(457-459)CGA>TGA	p.R153*	HPSE2_uc009xwc.1_Nonsense_Mutation_p.R143*|HPSE2_uc001kpo.1_Nonsense_Mutation_p.R143*|HPSE2_uc009xwd.1_Intron	NM_021828	NP_068600	Q8WWQ2	HPSE2_HUMAN	heparanase 2	153					carbohydrate metabolic process	intracellular|membrane	cation binding|heparanase activity			ovary(1)	1				Epithelial(162;1.8e-09)|all cancers(201;4.72e-07)		ACATCACTTCGAACAATGTCT	0.403													5	36					0	0	1	0	0
CUTC	51076	broad.mit.edu	37	10	101503026	101503026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:101503026C>T	uc001kqd.3	+	4	458	c.310C>T	c.(310-312)CGT>TGT	p.R104C	CUTC_uc010qpk.1_Missense_Mutation_p.R104C|CUTC_uc001kqe.3_RNA	NM_015960	NP_057044	Q9NTM9	CUTC_HUMAN	cutC copper transporter homolog	104					copper ion homeostasis|copper ion transport|protein tetramerization	cytoplasm|nucleus	copper ion binding			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3e-10)|all cancers(201;2.37e-08)		GGCTGACATTCGTCTTGCCAA	0.443													7	90					0	0	1	0	0
ABCC2	1244	broad.mit.edu	37	10	101590174	101590174	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:101590174C>T	uc001kqf.2	+	20	2870	c.2731C>T	c.(2731-2733)CGA>TGA	p.R911*		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	911	Cytoplasmic (By similarity).					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	CAGCTTTCGTCGAACACTTAG	0.473													5	69					0	0	1	0	0
DNMBP	23268	broad.mit.edu	37	10	101715970	101715970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:101715970G>A	uc001kqj.2	-	4	1353	c.1261C>T	c.(1261-1263)CAT>TAT	p.H421Y	NCRNA00093_uc001kqk.1_Intron	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	421					intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		AAGTTGGGATGAAAAGGGACC	0.527													9	132					0	0	1	0	0
PKD2L1	9033	broad.mit.edu	37	10	102049786	102049786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:102049786G>A	uc001kqx.1	-	14	2619	c.2236C>T	c.(2236-2238)CCC>TCC	p.P746S	PKD2L1_uc009xwm.1_Missense_Mutation_p.P699S	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	746	Cytoplasmic (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		CCTGGGGAGGGAGCCAGCCAC	0.557													7	96					0	0	1	0	0
SEC31B	25956	broad.mit.edu	37	10	102249077	102249077	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:102249077G>A	uc001krc.1	-	23	3205	c.3103C>T	c.(3103-3105)CCC>TCC	p.P1035S	SEC31B_uc010qpo.1_Missense_Mutation_p.P1034S|SEC31B_uc001krd.1_Missense_Mutation_p.P572S|SEC31B_uc001krf.1_Missense_Mutation_p.P467S|SEC31B_uc001kre.1_Missense_Mutation_p.P467S	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	1035	Pro-rich.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		GGCTGTGAGGGAAGAATCCCT	0.542													6	44					0	0	1	0	0
PAX2	5076	broad.mit.edu	37	10	102566297	102566297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:102566297C>T	uc001krk.3	+	7	1346	c.796C>T	c.(796-798)CGG>TGG	p.R266W	PAX2_uc001krl.3_Missense_Mutation_p.R243W|PAX2_uc001krm.3_Missense_Mutation_p.R266W|PAX2_uc001kro.3_Missense_Mutation_p.R243W|PAX2_uc001krn.3_Missense_Mutation_p.R243W|PAX2_uc010qps.1_Missense_Mutation_p.R242W|PAX2_uc001krp.1_Missense_Mutation_p.R239W	NM_003990	NP_003981	Q02962	PAX2_HUMAN	paired box protein 2 isoform e	266					anti-apoptosis|axonogenesis|brain morphogenesis|branching involved in ureteric bud morphogenesis|cell fate determination|cellular response to glucose stimulus|cellular response to hydrogen peroxide|cellular response to retinoic acid|cochlea development|glial cell differentiation|inner ear morphogenesis|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesodermal cell fate specification|mesonephros development|metanephric collecting duct development|metanephric distal convoluted tubule development|metanephric mesenchymal cell differentiation|metanephric nephron tubule formation|negative regulation of caspase activity|negative regulation of cytolysis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|negative regulation of reactive oxygen species metabolic process|negative regulation of transcription, DNA-dependent|nephric duct formation|neural tube closure|optic chiasma development|optic cup morphogenesis involved in camera-type eye development|optic nerve structural organization|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of metanephric glomerulus development|positive regulation of optic nerve formation|positive regulation of transcription from RNA polymerase II promoter|pronephric field specification|protein kinase B signaling cascade|reactive oxygen species metabolic process|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of metanephros size|retinal pigment epithelium development|stem cell differentiation|transcription from RNA polymerase II promoter|ureter maturation|vestibulocochlear nerve formation|visual perception	centriolar satellite|nucleus|protein complex|protein-DNA complex	core promoter proximal region sequence-specific DNA binding|superoxide-generating NADPH oxidase activity				0		Colorectal(252;0.234)		Epithelial(162;1.32e-08)|all cancers(201;7.32e-07)		AGCTTTGGATCGGGTCTTTGA	0.542													23	243					0	0	1	0	0
SEMA4G	57715	broad.mit.edu	37	10	102738913	102738913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:102738913G>A	uc010qpt.1	+	9	1311	c.868G>A	c.(868-870)GCC>ACC	p.A290T	SEMA4G_uc001krv.2_RNA|SEMA4G_uc001krw.1_Missense_Mutation_p.A290T|SEMA4G_uc001krx.2_Missense_Mutation_p.A290T|MRPL43_uc001kry.1_3'UTR|MRPL43_uc010qpu.1_3'UTR	NM_017893	NP_060363	Q9NTN9	SEM4G_HUMAN	semaphorin 4G	290	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3.71e-09)|all cancers(201;2.1e-07)		CTTCCTGAAAGCCCGTCTCAT	0.567													13	67					0	0	1	0	0
MRPL43	84545	broad.mit.edu	37	10	102739120	102739120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:102739120G>A	uc001kry.1	-	5	610	c.538C>T	c.(538-540)CCC>TCC	p.P180S	SEMA4G_uc001krv.2_Intron|SEMA4G_uc010qpt.1_Intron|SEMA4G_uc001krw.1_Intron|SEMA4G_uc001krx.2_Intron|MRPL43_uc010qpu.1_Missense_Mutation_p.P222L	NM_176792	NP_789762	Q8N983	RM43_HUMAN	mitochondrial ribosomal protein L43 isoform b	180					translation	mitochondrial ribosome	protein binding|structural constituent of ribosome			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;6.21e-09)|all cancers(201;3.14e-07)		TCCACTGTGGGGAGGTCTGGC	0.343													4	51					0	0	1	0	0
LZTS2	84445	broad.mit.edu	37	10	102762545	102762545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:102762545C>T	uc001ksj.2	+	2	319	c.250C>T	c.(250-252)CCT>TCT	p.P84S	LZTS2_uc010qpw.1_Missense_Mutation_p.P84S|LZTS2_uc001ksk.2_Missense_Mutation_p.P84S|LZTS2_uc001ksl.2_Missense_Mutation_p.P84S|LZTS2_uc001ksm.2_RNA	NM_032429	NP_115805	Q9BRK4	LZTS2_HUMAN	leucine zipper, putative tumor suppressor 2	84	Required for centrosomal localization (By similarity).				cell division|mitosis|Wnt receptor signaling pathway	membrane|microtubule|microtubule organizing center				ovary(2)|large_intestine(1)|breast(1)	4				Epithelial(162;7.3e-09)|all cancers(201;3.72e-07)		GAAGGCTGTCCCTGTCACCAG	0.627													6	24					0	0	1	0	0
LZTS2	84445	broad.mit.edu	37	10	102763433	102763433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:102763433C>T	uc001ksj.2	+	3	647	c.578C>T	c.(577-579)TCC>TTC	p.S193F	LZTS2_uc010qpw.1_Missense_Mutation_p.S193F|LZTS2_uc001ksk.2_Missense_Mutation_p.S193F|LZTS2_uc001ksl.2_Missense_Mutation_p.S193F|LZTS2_uc001ksm.2_RNA	NM_032429	NP_115805	Q9BRK4	LZTS2_HUMAN	leucine zipper, putative tumor suppressor 2	193	Ser-rich.|Required for centrosomal localization (By similarity).				cell division|mitosis|Wnt receptor signaling pathway	membrane|microtubule|microtubule organizing center				ovary(2)|large_intestine(1)|breast(1)	4				Epithelial(162;7.3e-09)|all cancers(201;3.72e-07)		tcctcctcttcctcctcctct	0.547													33	156					0	0	1	0	0
LZTS2	84445	broad.mit.edu	37	10	102763580	102763580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:102763580C>T	uc001ksj.2	+	3	794	c.725C>T	c.(724-726)TCC>TTC	p.S242F	LZTS2_uc010qpw.1_Missense_Mutation_p.S242F|LZTS2_uc001ksk.2_Missense_Mutation_p.S242F|LZTS2_uc001ksl.2_Missense_Mutation_p.S242F|LZTS2_uc001ksm.2_RNA	NM_032429	NP_115805	Q9BRK4	LZTS2_HUMAN	leucine zipper, putative tumor suppressor 2	242	Ser-rich.|Required for centrosomal localization (By similarity).				cell division|mitosis|Wnt receptor signaling pathway	membrane|microtubule|microtubule organizing center				ovary(2)|large_intestine(1)|breast(1)	4				Epithelial(162;7.3e-09)|all cancers(201;3.72e-07)		ACCACCAGCTCCCCAGGCGGG	0.697													7	61					0	0	1	0	0
LZTS2	84445	broad.mit.edu	37	10	102763707	102763707	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:102763707C>T	uc001ksj.2	+	3	921	c.852C>T	c.(850-852)TCC>TCT	p.S284S	LZTS2_uc010qpw.1_Silent_p.S284S|LZTS2_uc001ksk.2_Silent_p.S284S|LZTS2_uc001ksl.2_Silent_p.S284S|LZTS2_uc001ksm.2_RNA	NM_032429	NP_115805	Q9BRK4	LZTS2_HUMAN	leucine zipper, putative tumor suppressor 2	284	Ser-rich.|Required for centrosomal localization (By similarity).				cell division|mitosis|Wnt receptor signaling pathway	membrane|microtubule|microtubule organizing center				ovary(2)|large_intestine(1)|breast(1)	4				Epithelial(162;7.3e-09)|all cancers(201;3.72e-07)		GCACAGGCTCCCTAGGGGGCC	0.711													5	78					0	0	1	0	0
SFXN3	81855	broad.mit.edu	37	10	102799291	102799291	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:102799291C>T	uc001ksp.2	+	12	1383	c.927C>T	c.(925-927)ATC>ATT	p.I309I	SFXN3_uc001ksq.2_Silent_p.I309I|SFXN3_uc010qpx.1_Silent_p.I313I	NM_030971	NP_112233	Q9BWM7	SFXN3_HUMAN	sideroflexin 3	309					iron ion homeostasis	integral to membrane|mitochondrial membrane	cation transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		GAGCTCAGATCCATGAGCAAA	0.537													7	116					0	0	1	0	0
BTRC	8945	broad.mit.edu	37	10	103294527	103294527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:103294527C>T	uc001kta.2	+	10	1320	c.1207C>T	c.(1207-1209)CGT>TGT	p.R403C	BTRC_uc001ktb.2_Missense_Mutation_p.R367C|BTRC_uc001ktc.2_Missense_Mutation_p.R377C	NM_033637	NP_378663	Q9Y297	FBW1A_HUMAN	beta-transducin repeat containing protein	403	WD 3.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|positive regulation of proteolysis|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|viral reproduction|Wnt receptor signaling pathway	cytosol|nucleus|SCF ubiquitin ligase complex				ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;1.05e-08)|all cancers(201;6.59e-07)		CTCCAAAGATCGTTCCATTGC	0.473													19	140					0	0	1	0	0
PPRC1	23082	broad.mit.edu	37	10	103900141	103900141	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:103900141C>T	uc001kum.2	+	5	1915	c.1876C>T	c.(1876-1878)CCG>TCG	p.P626S	PPRC1_uc001kun.2_Missense_Mutation_p.P506S|PPRC1_uc010qqj.1_Missense_Mutation_p.P626S|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	626					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		TGAGCCTCTCCCGGCTGAGCC	0.562													10	55					0	0	1	0	0
PPRC1	23082	broad.mit.edu	37	10	103908950	103908950	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:103908950C>T	uc001kum.2	+	13	4794	c.4755C>T	c.(4753-4755)TTC>TTT	p.F1585F	PPRC1_uc001kun.2_Silent_p.F1463F|PPRC1_uc010qqj.1_Silent_p.F1321F|PPRC1_uc009xxa.2_RNA|NOLC1_uc001kuo.2_5'Flank|NOLC1_uc001kup.2_5'Flank|NOLC1_uc001kuq.2_5'Flank|NOLC1_uc009xxb.1_5'Flank|NOLC1_uc001kur.2_5'Flank	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	1585	RRM.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		ACTACGGCTTCGTCACTTATC	0.572													6	84					0	0	1	0	0
PSD	5662	broad.mit.edu	37	10	104176438	104176438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:104176438G>A	uc001kvg.1	-	2	885	c.358C>T	c.(358-360)CCA>TCA	p.P120S	PSD_uc001kvh.1_Intron|PSD_uc009xxd.1_Missense_Mutation_p.P120S|PSD_uc001kvi.1_Missense_Mutation_p.P120S|FBXL15_uc001kvj.1_5'Flank	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	120	Pro-rich.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		AAGCCCCCTGGAGCAGGTAGC	0.652													6	42					0	0	1	0	0
SFXN2	118980	broad.mit.edu	37	10	104486483	104486483	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:104486483C>T	uc001kwb.2	+	2	256	c.90C>T	c.(88-90)ATC>ATT	p.I30I	SFXN2_uc001kwc.2_RNA|SFXN2_uc001kwd.2_RNA	NM_178858	NP_849189	Q96NB2	SFXN2_HUMAN	sideroflexin 2	30					iron ion homeostasis	integral to membrane	cation transmembrane transporter activity				0		Colorectal(252;0.207)		Epithelial(162;4.53e-09)|all cancers(201;1.2e-07)|BRCA - Breast invasive adenocarcinoma(275;0.218)		TCCTAAACATCACGGACCCCC	0.592													10	70					0	0	1	0	0
CYP17A1	1586	broad.mit.edu	37	10	104594763	104594763	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:104594763C>T	uc001kwg.2	-	3	617	c.445G>A	c.(445-447)GAA>AAA	p.E149K		NM_000102	NP_000093	P05093	CP17A_HUMAN	cytochrome P450, family 17	149					androgen biosynthetic process|glucocorticoid biosynthetic process|sex differentiation|xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|oxygen binding|steroid 17-alpha-monooxygenase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)	NADH(DB00157)|Progesterone(DB00396)	GTACTGATTTCCTGACAAACT	0.517											OREG0020487	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	55					0	0	1	0	0
NEURL	9148	broad.mit.edu	37	10	105330665	105330665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:105330665G>A	uc001kxh.2	+	2	532	c.122G>A	c.(121-123)CGA>CAA	p.R41Q		NM_004210	NP_004201	O76050	NEU1A_HUMAN	neuralized-like	41					nervous system development	perinuclear region of cytoplasm	zinc ion binding				0				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		ACTTCTCACCGATGCCACCAC	0.652													42	196					0	0	1	0	0
C10orf79	80217	broad.mit.edu	37	10	105920818	105920818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:105920818C>T	uc001kxw.2	-	27	3633	c.3517G>A	c.(3517-3519)GAA>AAA	p.E1173K	C10orf79_uc009xxq.2_Missense_Mutation_p.E481K	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1173	Potential.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		TCTCTTTCTTCATTTAACTCC	0.318													4	14					0	0	1	0	0
C10orf79	80217	broad.mit.edu	37	10	105944858	105944858	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:105944858A>T	uc001kxw.2	-	16	2173	c.2057T>A	c.(2056-2058)ATT>AAT	p.I686N	C10orf79_uc009xxq.2_5'UTR|C10orf79_uc001kxx.3_Missense_Mutation_p.I687N	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	686	WD 9.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		CATTGACTGAATCCCATGACC	0.403													10	67					0	0	1	0	0
C10orf79	80217	broad.mit.edu	37	10	105945824	105945824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:105945824C>T	uc001kxw.2	-	15	2034	c.1918G>A	c.(1918-1920)GGA>AGA	p.G640R	C10orf79_uc009xxq.2_5'UTR|C10orf79_uc001kxx.3_Missense_Mutation_p.G641R	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	640											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		AGTCCAGGTCCATACTGTCTG	0.378													6	71					0	0	1	0	0
ITPRIP	85450	broad.mit.edu	37	10	106075107	106075107	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:106075107G>A	uc001kye.2	-	2	776	c.703C>T	c.(703-705)CTG>TTG	p.L235L	ITPRIP_uc001kyf.2_Silent_p.L235L|ITPRIP_uc001kyg.2_Silent_p.L235L	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	235						plasma membrane					0						TGGCGATCCAGGGGCACTGAG	0.652													7	59					0	0	1	0	0
XPNPEP1	7511	broad.mit.edu	37	10	111631566	111631567	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:111631566_111631567GA>AT	uc001kyp.1	-	17	1516_1517	c.1376_1377TC>AT	c.(1375-1377)TTC>TAT	p.F459Y	XPNPEP1_uc009xxt.1_Missense_Mutation_p.F478Y|XPNPEP1_uc001kyq.1_Missense_Mutation_p.F388Y	NM_020383	NP_065116	Q9NQW7	XPP1_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 1,	459					bradykinin catabolic process|proteolysis		manganese ion binding|metalloaminopeptidase activity|protein homodimerization activity			ovary(3)|pancreas(1)	4		Breast(234;0.174)		Epithelial(162;1.64e-05)|all cancers(201;0.000564)|BRCA - Breast invasive adenocarcinoma(275;0.0721)		TTCCAGTCGGGAAAACGGCTGC	0.46													5	85					0	0	1	0	0
DUSP5	1847	broad.mit.edu	37	10	112266908	112266908	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:112266908C>T	uc001kzd.2	+	3	999	c.744C>T	c.(742-744)TTC>TTT	p.F248F		NM_004419	NP_004410	Q16690	DUS5_HUMAN	dual specificity phosphatase 5	248	Tyrosine-protein phosphatase.				endoderm formation|inactivation of MAPK activity	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1		Breast(234;0.0848)		Epithelial(162;0.000276)|all cancers(201;0.00465)|BRCA - Breast invasive adenocarcinoma(275;0.12)		CAATAGACTTCATTGGTAGGT	0.502													8	68					0	0	1	0	0
TECTB	6975	broad.mit.edu	37	10	114061864	114061864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:114061864G>A	uc001kzr.1	+	9	913	c.913G>A	c.(913-915)GGA>AGA	p.G305R		NM_058222	NP_478129	Q96PL2	TECTB_HUMAN	tectorin beta precursor	305						anchored to membrane|plasma membrane|proteinaceous extracellular matrix					0		Colorectal(252;0.198)		Epithelial(162;0.0143)|all cancers(201;0.0242)		TACAGGCAGGGGATTTTCCAG	0.403													5	63					0	0	1	0	0
ACSL5	51703	broad.mit.edu	37	10	114168252	114168252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:114168252G>A	uc001kzs.2	+	6	646	c.505G>A	c.(505-507)GAA>AAA	p.E169K	ACSL5_uc001kzt.2_Missense_Mutation_p.E169K|ACSL5_uc001kzu.2_Missense_Mutation_p.E225K|ACSL5_uc009xxz.2_Missense_Mutation_p.E169K|ACSL5_uc010qrj.1_5'Flank	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	169	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		CTTGGGACCAGAAGCCATCGT	0.388													4	46					0	0	1	0	0
ACSL5	51703	broad.mit.edu	37	10	114169359	114169359	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:114169359C>T	uc001kzs.2	+	7	768	c.627C>T	c.(625-627)ATC>ATT	p.I209I	ACSL5_uc001kzt.2_Silent_p.I209I|ACSL5_uc001kzu.2_Silent_p.I265I|ACSL5_uc009xxz.2_Silent_p.I209I|ACSL5_uc010qrj.1_5'UTR	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	209	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		TGAAGGTGATCATCCTTATGG	0.468													8	70					0	0	1	0	0
HABP2	3026	broad.mit.edu	37	10	115341719	115341719	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:115341719A>C	uc001lai.3	+	9	1026	c.923A>C	c.(922-924)GAG>GCG	p.E308A	HABP2_uc010qrz.1_Intron	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	308					cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		GAGATAGCAGAGAGGAAGATC	0.557													5	92					0	0	1	0	0
NRAP	4892	broad.mit.edu	37	10	115389428	115389428	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:115389428C>T	uc001laj.2	-	19	2123	c.1959G>A	c.(1957-1959)AGG>AGA	p.R653R	NRAP_uc009xyb.2_5'Flank|NRAP_uc001lak.2_Silent_p.R618R|NRAP_uc001lal.3_Silent_p.R653R	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	653	Nebulin 15.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		GCAGTTTCTTCCTGTAGTCCA	0.507													4	51					0	0	1	0	0
NRAP	4892	broad.mit.edu	37	10	115393910	115393910	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:115393910C>T	uc001laj.2	-	15	1652	c.1488G>A	c.(1486-1488)CAG>CAA	p.Q496Q	NRAP_uc001lak.2_Silent_p.Q461Q|NRAP_uc001lal.3_Silent_p.Q496Q	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	496	Nebulin 11.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		CTTGAACAATCTGTGGGGTGT	0.468													14	62					0	0	1	0	0
C10orf81	79949	broad.mit.edu	37	10	115531816	115531816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:115531816C>T	uc001lat.1	+	7	1184	c.622C>T	c.(622-624)CAT>TAT	p.H208Y	C10orf81_uc001lar.1_Missense_Mutation_p.H214Y|C10orf81_uc009xyc.1_Missense_Mutation_p.H126Y|C10orf81_uc001las.1_Missense_Mutation_p.H126Y|C10orf81_uc001lau.1_Missense_Mutation_p.H28Y	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	208										central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		GGAAGAGAATCATTATCTTAC	0.303													4	31					0	0	1	0	0
TDRD1	56165	broad.mit.edu	37	10	115986989	115986989	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:115986989G>A	uc001lbg.1	+	23	3487	c.3334G>A	c.(3334-3336)GCT>ACT	p.A1112T	TDRD1_uc001lbf.2_Missense_Mutation_p.A989T|TDRD1_uc001lbh.1_Missense_Mutation_p.A1099T|TDRD1_uc001lbi.1_Missense_Mutation_p.A1103T|TDRD1_uc010qsc.1_Intron|TDRD1_uc001lbj.2_Missense_Mutation_p.A821T	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	1112					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		TGTCGATGTAGCTGATAAGCT	0.363													4	46					0	0	1	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118360595	118360595	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:118360595C>T	uc001lco.1	+	10	963	c.945C>T	c.(943-945)TTC>TTT	p.F315F	PNLIPRP1_uc001lcp.2_Silent_p.F315F	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	315					lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		ACAAGTGCTTCCCGTGTCCAG	0.388													7	60					0	0	1	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118365010	118365010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:118365010C>T	uc001lco.1	+	12	1303	c.1285C>T	c.(1285-1287)CTC>TTC	p.L429F	PNLIPRP1_uc001lcp.2_Missense_Mutation_p.L429F	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	429	PLAT.				lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		AAATCCAACCCTCCCCAAAGT	0.428													5	52					0	0	1	0	0
KIAA1598	57698	broad.mit.edu	37	10	118681008	118681009	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:118681008_118681009GG>AA	uc009xyw.2	-	12	1629_1630	c.1131_1132CC>TT	c.(1129-1134)ATCCGG>ATTTGG	p.R378W	KIAA1598_uc001lcz.3_Missense_Mutation_p.R378W|KIAA1598_uc010qso.1_Missense_Mutation_p.R318W|KIAA1598_uc010qsp.1_Missense_Mutation_p.R378W|KIAA1598_uc010qsq.1_Missense_Mutation_p.R318W|KIAA1598_uc001lcy.3_Missense_Mutation_p.R348W	NM_001127211	NP_001120683	A0MZ66	SHOT1_HUMAN	shootin1 isoform a	378					axon guidance	axon					0				all cancers(201;0.00494)		GATCGTTTCCGGATCATGGACA	0.421													6	22					0	0	1	0	0
KCNK18	338567	broad.mit.edu	37	10	118969283	118969283	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:118969283C>T	uc010qsr.1	+	3	628	c.628C>T	c.(628-630)CCA>TCA	p.P210S		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	210	Cytoplasmic (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		TGAAGAGCTTCCAGGCCCCAA	0.532													4	59					0	0	1	0	0
PRLHR	2834	broad.mit.edu	37	10	120353731	120353731	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:120353731G>A	uc001ldp.1	-	2	1165	c.1026C>T	c.(1024-1026)TTC>TTT	p.F342F		NM_004248	NP_004239	P49683	PRLHR_HUMAN	G protein-coupled receptor 10	342	Cytoplasmic (Potential).				female pregnancy	integral to plasma membrane	neuropeptide Y receptor activity				0		Colorectal(252;0.0429)|Lung NSC(174;0.142)|all_lung(145;0.175)		all cancers(201;0.0166)		GCTCCTCGCGGAAGCTGTCGT	0.607													6	45					0	0	1	0	0
SFXN4	119559	broad.mit.edu	37	10	120914643	120914643	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:120914643G>A	uc001leb.2	-	11	708	c.663C>T	c.(661-663)TCC>TCT	p.S221S	SFXN4_uc001ldy.2_Silent_p.S105S|SFXN4_uc001ldz.2_Silent_p.S105S|SFXN4_uc001lea.2_RNA	NM_213649	NP_998814	Q6P4A7	SFXN4_HUMAN	sideroflexin 4	221					iron ion homeostasis	integral to membrane|mitochondrial membrane	cation transmembrane transporter activity			ovary(1)	1		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0261)		TCCCCTTAATGGATTCAAGAC	0.473													10	68					0	0	1	0	0
GRK5	2869	broad.mit.edu	37	10	121182770	121182770	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:121182770C>T	uc001led.2	+	5	665	c.432C>T	c.(430-432)GCC>GCT	p.A144A	GRK5_uc009xzh.2_Silent_p.A39A|GRK5_uc010qta.1_Silent_p.A39A	NM_005308	NP_005299	P34947	GRK5_HUMAN	G protein-coupled receptor kinase 5	144	N-terminal.|RGS.				G-protein signaling, coupled to cAMP nucleotide second messenger|regulation of G-protein coupled receptor protein signaling pathway|tachykinin receptor signaling pathway	cytoplasm|plasma membrane|soluble fraction	ATP binding|G-protein coupled receptor kinase activity|phospholipid binding|protein kinase C binding|signal transducer activity			lung(2)|stomach(1)	3		Lung NSC(174;0.0971)|all_lung(145;0.127)|Ovarian(717;0.249)		all cancers(201;0.0227)		TCTTTTCTGCCTGTGCACAGT	0.582													8	85					0	0	1	0	0
INPP5F	22876	broad.mit.edu	37	10	121563788	121563788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:121563788C>T	uc001leo.2	+	10	1386	c.1220C>T	c.(1219-1221)TCG>TTG	p.S407L		NM_014937	NP_055752	Q9Y2H2	SAC2_HUMAN	inositol polyphosphate-5-phosphatase F	407	SAC.						phosphoric ester hydrolase activity			ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00205)|BRCA - Breast invasive adenocarcinoma(275;0.158)		ACTTACGTTTCGTTTGACTTC	0.428													6	55					0	0	1	0	0
WDR11	55717	broad.mit.edu	37	10	122664262	122664262	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:122664262C>T	uc010qtf.1	+	25	3370	c.3132C>T	c.(3130-3132)GGC>GGT	p.G1044G	WDR11_uc010qte.1_Silent_p.G646G|WDR11_uc001lfd.1_Silent_p.G562G|WDR11_uc009xzn.2_Silent_p.G335G|uc001lfe.1_5'Flank	NM_018117	NP_060587	Q9BZH6	WDR11_HUMAN	bromodomain and WD repeat domain containing 2	1044						integral to membrane					0						CCTCGTCAGGCCCCTCTCAGA	0.443													5	53					0	0	1	0	0
FGFR2	2263	broad.mit.edu	37	10	123298130	123298130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:123298130G>A	uc010qtk.1	-	6	1371	c.724C>T	c.(724-726)CAC>TAC	p.H242Y	FGFR2_uc010qtg.1_Missense_Mutation_p.H242Y|FGFR2_uc010qth.1_Missense_Mutation_p.H127Y|FGFR2_uc010qti.1_Missense_Mutation_p.H153Y|FGFR2_uc010qtj.1_Missense_Mutation_p.H242Y|FGFR2_uc010qtl.1_Missense_Mutation_p.H242Y|FGFR2_uc010qtm.1_Missense_Mutation_p.H127Y|FGFR2_uc001lfl.3_Missense_Mutation_p.H242Y|FGFR2_uc001lfm.2_Missense_Mutation_p.H153Y|FGFR2_uc001lfn.3_RNA|FGFR2_uc010qtn.1_Missense_Mutation_p.H261Y|FGFR2_uc010qto.1_Missense_Mutation_p.H146Y|FGFR2_uc001lfo.1_Missense_Mutation_p.H261Y|FGFR2_uc010qtp.1_Missense_Mutation_p.H261Y|FGFR2_uc010qtq.1_Missense_Mutation_p.H261Y	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	242	Ig-like C2-type 2.|Extracellular (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	TGGTACGTGTGATTGATGGAC	0.493		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				4	18					0	0	1	0	0
FGFR2	2263	broad.mit.edu	37	10	123324094	123324094	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:123324094C>T	uc010qtk.1	-	4	1024	c.377_splice	c.e4-1	p.D126_splice	FGFR2_uc010qtg.1_Splice_Site_p.D126_splice|FGFR2_uc010qth.1_Intron|FGFR2_uc010qti.1_Splice_Site_p.D37_splice|FGFR2_uc010qtj.1_Splice_Site_p.D126_splice|FGFR2_uc010qtl.1_Splice_Site_p.D126_splice|FGFR2_uc010qtm.1_Intron|FGFR2_uc001lfl.3_Splice_Site_p.D126_splice|FGFR2_uc001lfm.2_Splice_Site_p.D37_splice|FGFR2_uc001lfn.3_Intron|FGFR2_uc010qtn.1_Splice_Site_p.D145_splice|FGFR2_uc010qto.1_Intron|FGFR2_uc001lfo.1_Splice_Site_p.D145_splice|FGFR2_uc010qtp.1_Splice_Site_p.D145_splice|FGFR2_uc010qtq.1_Splice_Site_p.D145_splice	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1						angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	GAGATGGCATCTGTATGCAAA	0.433		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				10	77					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123845802	123845802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:123845802G>A	uc001lfv.2	+	4	4147	c.3787G>A	c.(3787-3789)GCT>ACT	p.A1263T	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.A1263T|TACC2_uc010qtv.1_Missense_Mutation_p.A1263T	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1263						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AGACCCCAGAGCTCCTGGCGA	0.597													7	61					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123903191	123903191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:123903191C>T	uc001lfv.2	+	7	6164	c.5804C>T	c.(5803-5805)TCC>TTC	p.S1935F	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Intron|TACC2_uc010qtv.1_Intron|TACC2_uc001lfx.2_Intron|TACC2_uc001lfy.2_Intron	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1935						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				TCCACTCCCTCCTGCCCAGAT	0.642													4	42					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123970341	123970341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:123970341C>T	uc001lfv.2	+	9	6761	c.6401C>T	c.(6400-6402)TCC>TTC	p.S2134F	TACC2_uc001lfw.2_Missense_Mutation_p.S280F|TACC2_uc009xzx.2_Missense_Mutation_p.S2089F|TACC2_uc010qtv.1_Missense_Mutation_p.S2138F|TACC2_uc001lfx.2_5'UTR|TACC2_uc001lfy.2_5'UTR|TACC2_uc001lfz.2_Missense_Mutation_p.S212F|TACC2_uc001lga.2_Missense_Mutation_p.S212F|TACC2_uc009xzy.2_Missense_Mutation_p.S212F|TACC2_uc001lgb.2_Missense_Mutation_p.S169F|TACC2_uc010qtw.1_Missense_Mutation_p.S229F	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2134						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AGGCCGCCTTCCTTAAAAAAG	0.557													9	95					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123970902	123970902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:123970902C>T	uc001lfv.2	+	9	7322	c.6962C>T	c.(6961-6963)TCC>TTC	p.S2321F	TACC2_uc001lfw.2_Missense_Mutation_p.S467F|TACC2_uc009xzx.2_Missense_Mutation_p.S2276F|TACC2_uc010qtv.1_Missense_Mutation_p.S2325F|TACC2_uc001lfx.2_Missense_Mutation_p.S25F|TACC2_uc001lfy.2_Missense_Mutation_p.S25F|TACC2_uc001lfz.2_Missense_Mutation_p.S399F|TACC2_uc001lga.2_Missense_Mutation_p.S399F|TACC2_uc009xzy.2_Missense_Mutation_p.S399F|TACC2_uc001lgb.2_Missense_Mutation_p.S356F|TACC2_uc010qtw.1_Missense_Mutation_p.S416F	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2321	SPAZ.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CCTCCCAGATCCCCTGCTGAA	0.468													32	166					0	0	1	0	0
BTBD16	118663	broad.mit.edu	37	10	124045735	124045735	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:124045735C>T	uc001lgc.1	+	5	608	c.357C>T	c.(355-357)CCC>CCT	p.P119P	BTBD16_uc001lgd.1_Silent_p.P118P	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	119										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				CCACACACCCCCTGAGGGAGC	0.617													5	88					0	0	1	0	0
HTRA1	5654	broad.mit.edu	37	10	124248979	124248979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:124248979C>T	uc001lgj.2	+	3	742	c.614C>T	c.(613-615)TCT>TTT	p.S205F		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	205	Serine protease.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				GCTAGTGGGTCTGGGTTTATT	0.493													6	115					0	0	1	0	0
HTRA1	5654	broad.mit.edu	37	10	124249002	124249002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:124249002G>A	uc001lgj.2	+	3	765	c.637G>A	c.(637-639)GGA>AGA	p.G213R		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	213	Serine protease.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				GTCGGAAGATGGACTGATCGT	0.498													5	100					0	0	1	0	0
HTRA1	5654	broad.mit.edu	37	10	124249080	124249080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:124249080G>A	uc001lgj.2	+	3	843	c.715G>A	c.(715-717)GAA>AAA	p.E239K		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	239	Serine protease.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				TGCCACTTACGAAGCCAAAAT	0.493													6	47					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124351025	124351025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:124351025C>T	uc001lgk.1	+	19	2274	c.2168C>T	c.(2167-2169)TCG>TTG	p.S723L	DMBT1_uc001lgl.1_Missense_Mutation_p.S713L|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.S723L|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	723					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TTACCTCCATCGACAGTAGGT	0.453													19	242					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124358399	124358399	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:124358399G>A	uc001lgk.1	+	26	3172	c.3066G>A	c.(3064-3066)TGG>TGA	p.W1022*	DMBT1_uc001lgl.1_Nonsense_Mutation_p.W1012*|DMBT1_uc001lgm.1_Nonsense_Mutation_p.W523*|DMBT1_uc009xzz.1_Nonsense_Mutation_p.W1022*|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1022	SRCR 8.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				ATGACAGCTGGGACACCAATG	0.612													40	338					0	0	1	0	0
CUZD1	50624	broad.mit.edu	37	10	124598641	124598641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:124598641G>A	uc001lgq.2	-	3	672	c.340C>T	c.(340-342)CCT>TCT	p.P114S	CUZD1_uc001lgp.2_5'Flank|CUZD1_uc009yad.2_5'Flank|CUZD1_uc009yaf.2_Intron|CUZD1_uc001lgr.2_5'UTR|CUZD1_uc010qty.1_5'UTR|CUZD1_uc009yae.2_5'UTR|CUZD1_uc001lgs.2_Missense_Mutation_p.P114S|CUZD1_uc010qtz.1_Missense_Mutation_p.P114S	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	114	CUB 1.|Extracellular (Potential).				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		TCAAATACAGGAACATAGTCG	0.408													8	90					0	0	1	0	0
CUZD1	50624	broad.mit.edu	37	10	124605334	124605334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:124605334G>A	uc001lgq.2	-	1	358	c.26C>T	c.(25-27)CCA>CTA	p.P9L	CUZD1_uc009yaf.2_5'UTR|CUZD1_uc001lgr.2_5'UTR|CUZD1_uc010qty.1_5'UTR|CUZD1_uc009yae.2_5'UTR|CUZD1_uc001lgs.2_Missense_Mutation_p.P9L|CUZD1_uc010qtz.1_Missense_Mutation_p.P9L	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	9					cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		GAGGGTCAATGGCATGAGCCT	0.473													3	21					0	0	1	0	0
FAM24A	118670	broad.mit.edu	37	10	124671177	124671177	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:124671177G>A	uc001lgv.2	+	2	148	c.27G>A	c.(25-27)ACG>ACA	p.T9T		NM_001029888	NP_001025059	A6NFZ4	FA24A_HUMAN	family with sequence similarity 24, member A	9						extracellular region				ovary(2)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.124)|COAD - Colon adenocarcinoma(40;0.141)		ATCTCAGGACGAAGATCATGA	0.488													10	91					0	0	1	0	0
FAM24A	118670	broad.mit.edu	37	10	124672371	124672371	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:124672371G>A	uc001lgv.2	+	3	340	c.219G>A	c.(217-219)ATG>ATA	p.M73I		NM_001029888	NP_001025059	A6NFZ4	FA24A_HUMAN	family with sequence similarity 24, member A	73						extracellular region				ovary(2)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.124)|COAD - Colon adenocarcinoma(40;0.141)		CCACCACCATGGAGTCTTGTC	0.512													6	23					0	0	1	0	0
CPXM2	119587	broad.mit.edu	37	10	125514272	125514272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:125514272G>A	uc001lhk.1	-	13	2249	c.1924C>T	c.(1924-1926)CGT>TGT	p.R642C	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	642					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		TTAATGCCACGATGAACCTGC	0.517													9	93					0	0	1	0	0
CPXM2	119587	broad.mit.edu	37	10	125516744	125516744	+	Silent	SNP	G	A	A	rs76525337	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:125516744G>A	uc001lhk.1	-	12	2227	c.1902C>T	c.(1900-1902)ATC>ATT	p.I634I	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	634					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		CCATGAACACGATCAGAGATT	0.532													6	52					0	0	1	0	0
CPXM2	119587	broad.mit.edu	37	10	125521504	125521504	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:125521504G>A	uc001lhk.1	-	11	1986	c.1661C>T	c.(1660-1662)TCC>TTC	p.S554F	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	554					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		GGAGGCATAGGAGTAGGCCAG	0.662													5	57					0	0	1	0	0
CHST15	51363	broad.mit.edu	37	10	125804332	125804332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:125804332G>A	uc001lhl.2	-	2	1163	c.650C>T	c.(649-651)TCC>TTC	p.S217F	CHST15_uc001lhm.2_Missense_Mutation_p.S217F|CHST15_uc001lhn.2_Missense_Mutation_p.S217F|CHST15_uc010que.1_Missense_Mutation_p.S217F|CHST15_uc001lho.2_Missense_Mutation_p.S217F	NM_015892	NP_056976	Q7LFX5	CHSTF_HUMAN	B cell RAG associated protein	217	Lumenal (Potential).				hexose biosynthetic process	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity			ovary(1)	1						GAGCACGTAGGAGTTGGTGAG	0.602													7	35					0	0	1	0	0
CHST15	51363	broad.mit.edu	37	10	125805433	125805433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:125805433G>A	uc001lhl.2	-	1	809	c.296C>T	c.(295-297)TCT>TTT	p.S99F	CHST15_uc001lhm.2_Missense_Mutation_p.S99F|CHST15_uc001lhn.2_Missense_Mutation_p.S99F|CHST15_uc010que.1_Missense_Mutation_p.S99F|CHST15_uc001lho.2_Missense_Mutation_p.S99F	NM_015892	NP_056976	Q7LFX5	CHSTF_HUMAN	B cell RAG associated protein	99	Helical; Signal-anchor for type II membrane protein; (Potential).				hexose biosynthetic process	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity			ovary(1)	1						GTGGGCCCCAGAAAGGATGTA	0.488													15	70					0	0	1	0	0
FAM53B	9679	broad.mit.edu	37	10	126370431	126370431	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:126370431G>A	uc001lhv.1	-	4	1174	c.651C>T	c.(649-651)CCC>CCT	p.P217P	FAM53B_uc001lhu.1_Silent_p.P217P|FAM53B_uc001lhw.2_Silent_p.P217P	NM_014661	NP_055476	Q14153	FA53B_HUMAN	hypothetical protein LOC9679	217										ovary(1)|pancreas(1)	2		all_lung(145;0.0191)|Lung NSC(174;0.0301)|Colorectal(57;0.106)|all_neural(114;0.117)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.15)		CTCCTCCCACGGGGTGCAGGT	0.637													6	18					0	0	1	0	0
DHX32	55760	broad.mit.edu	37	10	127569339	127569339	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:127569339G>A	uc001ljf.1	-	1	546	c.55C>T	c.(55-57)CCT>TCT	p.P19S	DHX32_uc001ljg.1_Missense_Mutation_p.P19S	NM_018180	NP_060650	Q7L7V1	DHX32_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32	19						mitochondrion|nucleus	ATP binding|helicase activity			breast(2)|ovary(1)|lung(1)	4		all_lung(145;0.00751)|Lung NSC(174;0.0115)|Colorectal(57;0.0846)|all_neural(114;0.0936)				AGGGATTCAGGAAAATAGCGT	0.468													6	62					0	0	1	0	0
FANK1	92565	broad.mit.edu	37	10	127693503	127693503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:127693503G>A	uc001ljh.3	+	7	694	c.590G>A	c.(589-591)CGA>CAA	p.R197Q	FANK1_uc009yan.2_Missense_Mutation_p.R223Q|FANK1_uc001lji.2_Missense_Mutation_p.R191Q	NM_145235	NP_660278	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains	197	ANK 3.					cytoplasm|nucleus				ovary(1)	1		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				AAATATCTCCGAAGACATGGC	0.512													12	112					0	0	1	0	0
ADAM12	8038	broad.mit.edu	37	10	127760218	127760218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:127760218G>A	uc001ljk.2	-	12	1573	c.1160C>T	c.(1159-1161)CCA>CTA	p.P387L	ADAM12_uc010qul.1_Missense_Mutation_p.P338L|ADAM12_uc001ljm.2_Missense_Mutation_p.P387L|ADAM12_uc001ljn.2_Missense_Mutation_p.P384L|ADAM12_uc001ljl.3_Missense_Mutation_p.P384L	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	387	Extracellular (Potential).|Peptidase M12B.				cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		CATGGGAAATGGGTACCTGAG	0.552													4	42					0	0	1	0	0
C10orf90	118611	broad.mit.edu	37	10	128192632	128192632	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:128192632G>A	uc001ljq.2	-	3	1258	c.1137C>T	c.(1135-1137)AAC>AAT	p.N379N	C10orf90_uc001ljp.2_Silent_p.N332N|C10orf90_uc010qum.1_Silent_p.N476N|C10orf90_uc009yao.2_Silent_p.N476N|C10orf90_uc001ljs.1_Silent_p.N332N	NM_001004298	NP_001004298	Q96M02	CJ090_HUMAN	hypothetical protein LOC118611	379										ovary(1)|skin(1)	2		all_epithelial(44;4.51e-05)|all_lung(145;0.0068)|Lung NSC(174;0.0105)|Colorectal(57;0.0848)|all_neural(114;0.0936)|Breast(234;0.203)		COAD - Colon adenocarcinoma(40;0.0442)|Colorectal(40;0.0479)		CAGTGACTTGGTTAGCTCCCA	0.493											OREG0020616	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	78					0	0	1	0	0
FAM196A	642938	broad.mit.edu	37	10	128974285	128974285	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:128974285C>T	uc001lju.1	-	1	416	c.375G>A	c.(373-375)GGG>GGA	p.G125G	DOCK1_uc001ljt.2_Intron|DOCK1_uc010qun.1_Intron|FAM196A_uc010quo.1_Silent_p.G125G|FAM196A_uc001ljv.1_Silent_p.G125G|FAM196A_uc009yap.1_Silent_p.G125G	NM_001039762	NP_001034851	Q6ZSG2	F196A_HUMAN	hypothetical protein LOC642938	125										ovary(2)	2						TTTTGAGGTTCCCCTTTTTGC	0.542													5	38					0	0	1	0	0
PTPRE	5791	broad.mit.edu	37	10	129846083	129846083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:129846083G>A	uc001lkb.2	+	5	544	c.265G>A	c.(265-267)GGA>AGA	p.G89R	PTPRE_uc009yat.2_Missense_Mutation_p.G100R|PTPRE_uc010qup.1_RNA|PTPRE_uc009yau.2_Missense_Mutation_p.G89R|PTPRE_uc001lkc.1_RNA|PTPRE_uc001lkd.2_Missense_Mutation_p.G31R|PTPRE_uc010quq.1_5'Flank	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	89	Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				GATGCCCAACGGAATCTTGGA	0.507													5	50					0	0	1	0	0
PTPRE	5791	broad.mit.edu	37	10	129868693	129868693	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:129868693C>T	uc001lkb.2	+	14	1551	c.1272C>T	c.(1270-1272)ATC>ATT	p.I424I	PTPRE_uc009yat.2_Silent_p.I435I|PTPRE_uc009yau.2_Silent_p.I424I|PTPRE_uc001lkd.2_Silent_p.I366I|PTPRE_uc010quq.1_Silent_p.I325I	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	424	Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				TCGACAAGATCGGGCTGGAGG	0.567													4	30					0	0	1	0	0
MKI67	4288	broad.mit.edu	37	10	129902429	129902429	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:129902429G>A	uc001lke.2	-	13	7870	c.7675C>T	c.(7675-7677)CTG>TTG	p.L2559L	MKI67_uc001lkf.2_Silent_p.L2199L|MKI67_uc009yav.1_Silent_p.L2134L|MKI67_uc009yaw.1_Silent_p.L1709L	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2559	16 X 122 AA approximate repeats.|13.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				AAGTCAACCAGGTCTTCTAGA	0.488													7	74					0	0	1	0	0
EBF3	253738	broad.mit.edu	37	10	131639260	131639260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:131639260C>T	uc001lki.1	-	14	1441	c.1382G>A	c.(1381-1383)CGA>CAA	p.R461Q		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	470	Pro/Ser/Thr-rich.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		GACGTAGCCTCGCGGGGACAC	0.552													9	126					0	0	1	0	0
EBF3	253738	broad.mit.edu	37	10	131641443	131641443	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:131641443C>T	uc001lki.1	-	12	1184	c.1125G>A	c.(1123-1125)GCG>GCA	p.A375A		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	384					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		CCACCAGGTCCGCCGCCCGCT	0.602													4	16					0	0	1	0	0
EBF3	253738	broad.mit.edu	37	10	131646736	131646736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:131646736C>T	uc001lki.1	-	11	1080	c.1021G>A	c.(1021-1023)GAA>AAA	p.E341K		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	350					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		ATGGTTGGTTCATTAAGGGCT	0.408													11	103					0	0	1	0	0
EBF3	253738	broad.mit.edu	37	10	131761669	131761669	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:131761669C>T	uc001lki.1	-	2	312	c.253G>A	c.(253-255)GAA>AAA	p.E85K	EBF3_uc010qur.1_Missense_Mutation_p.E71K	NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	85					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		GCGGTCCTTTCAATCTCCACC	0.557													13	147					0	0	1	0	0
DPYSL4	10570	broad.mit.edu	37	10	134016237	134016237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:134016237G>A	uc009ybb.2	+	12	1523	c.1369G>A	c.(1369-1371)GGG>AGG	p.G457R		NM_006426	NP_006417	O14531	DPYL4_HUMAN	dihydropyrimidinase-like 4	457					axon guidance|pyrimidine base catabolic process	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			central_nervous_system(2)	2		all_cancers(35;4.33e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;7.21e-05)|Epithelial(32;8.01e-05)|all cancers(32;9.29e-05)|BRCA - Breast invasive adenocarcinoma(275;0.206)		GCTGGAGGACGGGAAGATGTT	0.617													9	94					0	0	1	0	0
STK32C	282974	broad.mit.edu	37	10	134059437	134059437	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:134059437G>A	uc001lle.1	-	2	425	c.285C>T	c.(283-285)ATC>ATT	p.I95I	STK32C_uc001lld.1_5'UTR|STK32C_uc010quu.1_Silent_p.I108I|STK32C_uc009ybc.1_5'UTR|STK32C_uc009ybd.1_5'UTR|STK32C_uc001llc.1_RNA	NM_173575	NP_775846	Q86UX6	ST32C_HUMAN	serine/threonine kinase 32C	95	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|breast(1)	5		all_cancers(35;2.72e-11)|all_epithelial(44;2.33e-08)|Lung NSC(174;0.000855)|all_lung(145;0.00146)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.112)|Melanoma(40;0.124)|Glioma(114;0.203)		Epithelial(32;3.99e-05)|all cancers(32;5.58e-05)|OV - Ovarian serous cystadenocarcinoma(35;9.96e-05)|BRCA - Breast invasive adenocarcinoma(275;0.222)		TGGCCCGAAGGATCTGGAAGT	0.627													13	54					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	134646861	134646861	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:134646861C>T	uc010qux.1	-	42	6295	c.6295_splice	c.e42+1	p.E2099_splice		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		GCAGTTCCTACCTGTCTCTTC	0.373													5	59					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	134648888	134648888	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:134648888G>A	uc010qux.1	-	39	5842	c.5842C>T	c.(5842-5844)CTG>TTG	p.L1948L		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		CAGGCCAGCAGGTGGGAGAAG	0.637													5	61					0	0	1	0	0
C10orf93	255352	broad.mit.edu	37	10	134755113	134755113	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:134755113C>T	uc001llt.1	-	3	364	c.288G>A	c.(286-288)CCG>CCA	p.P96P	C10orf93_uc001llu.2_Silent_p.P96P	NM_173572	NP_775843	Q5SR76	CJ093_HUMAN	hypothetical protein LOC255352	96	TPR 1.						binding			pancreas(1)	1		all_cancers(35;1.8e-07)|all_epithelial(44;6.22e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Colorectal(31;0.119)|Glioma(114;0.172)|Melanoma(40;0.175)		Epithelial(32;4.28e-05)|OV - Ovarian serous cystadenocarcinoma(35;4.31e-05)|all cancers(32;5.02e-05)		CTGCCGACTTCGGGGCACACA	0.577													6	44					0	0	1	0	0
GPR123	84435	broad.mit.edu	37	10	134898364	134898364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:134898364C>T	uc001llw.2	+	8	1426	c.1426C>T	c.(1426-1428)CCT>TCT	p.P476S				Q86SQ6	GP123_HUMAN	RecName: Full=Probable G-protein coupled receptor 123;	224	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		GCTGAGCCTCCCTGAGGAGGA	0.642													5	38					0	0	1	0	0
TUBGCP2	10844	broad.mit.edu	37	10	135098992	135098992	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:135098992G>A	uc001lmg.1	-	12	2220	c.1863C>T	c.(1861-1863)ATC>ATT	p.I621I	TUBGCP2_uc001lmf.1_Silent_p.I214I|TUBGCP2_uc010qvc.1_Silent_p.I649I|TUBGCP2_uc009ybk.1_Intron|TUBGCP2_uc010qvd.1_Silent_p.I491I|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	621					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		GCCACTTGACGATGTAGTCGA	0.627													6	46					0	0	1	0	0
ZNF511	118472	broad.mit.edu	37	10	135123753	135123753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:135123753C>T	uc001lml.1	+	4	540	c.515C>T	c.(514-516)CCC>CTC	p.P172L	TUBGCP2_uc001lmg.1_5'Flank|TUBGCP2_uc010qvc.1_5'Flank|TUBGCP2_uc009ybk.1_5'Flank|TUBGCP2_uc010qvd.1_5'Flank|TUBGCP2_uc001lmh.1_Intron|ZNF511_uc001lmj.1_Missense_Mutation_p.P172L|ZNF511_uc001lmk.1_Intron|ZNF511_uc001lmm.1_RNA			Q8NB15	ZN511_HUMAN	SubName: Full=cDNA FLJ78327; SubName: Full=Zinc finger protein 511, isoform CRA_d;	172					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		all cancers(32;7.56e-06)|OV - Ovarian serous cystadenocarcinoma(35;8.15e-06)|Epithelial(32;9.99e-06)		CACCTGTACCCCGCGGACTTC	0.507													16	73					0	0	1	0	0
ZNF511	118472	broad.mit.edu	37	10	135125306	135125306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:135125306C>T	uc001lml.1	+	5	666	c.641C>T	c.(640-642)TCC>TTC	p.S214F	TUBGCP2_uc001lmg.1_5'Flank|TUBGCP2_uc010qvc.1_5'Flank|TUBGCP2_uc009ybk.1_5'Flank|TUBGCP2_uc010qvd.1_5'Flank|TUBGCP2_uc001lmh.1_RNA|ZNF511_uc001lmj.1_Missense_Mutation_p.S214F|ZNF511_uc001lmk.1_3'UTR|ZNF511_uc001lmm.1_RNA			Q8NB15	ZN511_HUMAN	SubName: Full=cDNA FLJ78327; SubName: Full=Zinc finger protein 511, isoform CRA_d;	214					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		all cancers(32;7.56e-06)|OV - Ovarian serous cystadenocarcinoma(35;8.15e-06)|Epithelial(32;9.99e-06)		GTGGCAGCCTCCCCTGCACCG	0.597													4	85					0	0	1	0	0
CYP2E1	1571	broad.mit.edu	37	10	135340950	135340950	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:135340950C>T	uc001lnj.1	+	1	84	c.51C>T	c.(49-51)CTC>CTT	p.L17L	CYP2E1_uc001lnk.1_5'UTR|CYP2E1_uc009ybl.1_5'UTR|CYP2E1_uc009ybm.1_5'UTR	NM_000773	NP_000764	P05181	CP2E1_HUMAN	cytochrome P450, family 2, subfamily E,	17					drug metabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding			central_nervous_system(3)	3		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)	Acetaminophen(DB00316)|Chlorzoxazone(DB00356)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Dacarbazine(DB00851)|Dapsone(DB00250)|Enflurane(DB00228)|Eszopiclone(DB00402)|Ethanol(DB00898)|Ethosuximide(DB00593)|Fomepizole(DB01213)|Glutathione(DB00143)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Isoniazid(DB00951)|Menadione(DB00170)|Mephenytoin(DB00532)|Methoxyflurane(DB01028)|Midazolam(DB00683)|Mitoxantrone(DB01204)|Nicotine(DB00184)|Nifedipine(DB01115)|Nitrofurantoin(DB00698)|Orphenadrine(DB01173)|Phenelzine(DB00780)|Quinidine(DB00908)|S-Adenosylmethionine(DB00118)|Sevoflurane(DB01236)|Theophylline(DB00277)|Tolbutamide(DB01124)	CGGCCTTCCTCCTGCTGGTGT	0.642									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				9	83					0	0	1	0	0
SYCE1	93426	broad.mit.edu	37	10	135372836	135372836	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:135372836G>A	uc001lno.2	-	3	270	c.165C>T	c.(163-165)GTC>GTT	p.V55V	CYP2E1_uc001lnl.1_3'UTR|SYCE1_uc001lnm.2_5'UTR|SYCE1_uc009ybn.2_Silent_p.V55V|SYCE1_uc001lnn.2_Silent_p.V19V	NM_001143764	NP_001137236	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	55	Potential.				cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		GGTTAATCAGGACCTCAACTC	0.468													9	42					0	0	1	0	0
SIRT3	23410	broad.mit.edu	37	11	233185	233185	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:233185G>A	uc001lok.3	-	3	538	c.504C>T	c.(502-504)CTC>CTT	p.L168L	SIRT3_uc001loj.3_Silent_p.L26L|SIRT3_uc010qvm.1_Silent_p.L104L|SIRT3_uc010qvn.1_Silent_p.L87L|SIRT3_uc010qvo.1_Silent_p.L168L|SIRT3_uc010qvp.1_Silent_p.L168L|SIRT3_uc010qvq.1_Silent_p.L26L|SIRT3_uc009ybt.1_RNA	NM_012239	NP_036371	Q9NTG7	SIRT3_HUMAN	sirtuin 3 isoform a	168	Deacetylase sirtuin-type.				chromatin silencing|protein ADP-ribosylation|protein deacetylation	mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|protein binding|zinc ion binding			urinary_tract(1)	1		all_cancers(49;1.58e-09)|all_epithelial(84;2.71e-06)|Breast(177;0.000162)|Ovarian(85;0.000626)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;3.66e-27)|Epithelial(43;2.02e-26)|OV - Ovarian serous cystadenocarcinoma(40;2.9e-21)|BRCA - Breast invasive adenocarcinoma(625;3.88e-05)|Lung(200;0.111)|LUSC - Lung squamous cell carcinoma(625;0.129)		CGTACTGCTGGAGGTTGCTGT	0.547													4	28					0	0	1	0	0
B4GALNT4	338707	broad.mit.edu	37	11	379966	379966	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:379966C>T	uc001lpb.2	+	16	2598	c.2589C>T	c.(2587-2589)TTC>TTT	p.F863F		NM_178537	NP_848632	Q76KP1	B4GN4_HUMAN	beta	863	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			pancreas(1)	1		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGGTGGATTTCGAGAGCGAGG	0.677													11	65					0	0	1	0	0
PHRF1	57661	broad.mit.edu	37	11	605145	605145	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:605145C>T	uc001lqe.2	+	11	1310	c.1179C>T	c.(1177-1179)ATC>ATT	p.I393I	PHRF1_uc010qwc.1_Silent_p.I393I|PHRF1_uc010qwd.1_Silent_p.I392I|PHRF1_uc010qwe.1_Silent_p.I389I|PHRF1_uc009ybz.1_Silent_p.I184I|PHRF1_uc009yca.1_5'Flank	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	393	Arg-rich.						RNA polymerase binding|zinc ion binding				0						GCTCTCGAATCGCGCGGACGC	0.567													5	26					0	0	1	0	0
CDHR5	53841	broad.mit.edu	37	11	619080	619080	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:619080C>T	uc001lqj.2	-	13	1584	c.1479G>A	c.(1477-1479)ACG>ACA	p.T493T	CDHR5_uc001lqk.2_Intron|CDHR5_uc009ycc.2_Silent_p.T327T|CDHR5_uc009ycd.2_Silent_p.T487T|CDHR5_uc001lql.2_Silent_p.T493T	NM_021924	NP_068743	Q9HBB8	CDHR5_HUMAN	mucin and cadherin-like isoform 1	493	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						CAGAGCTGGTCGTGGAGGGTC	0.677													10	37					0	0	1	0	0
AP2A2	161	broad.mit.edu	37	11	1010583	1010583	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:1010583C>T	uc001lss.2	+	22	2959	c.2778C>T	c.(2776-2778)GCC>GCT	p.A926A		NM_012305	NP_036437	O94973	AP2A2_HUMAN	adaptor-related protein complex 2, alpha 2	926					axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|cytosol	lipid binding|protein transporter activity				0		all_cancers(49;9.46e-06)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.75e-24)|BRCA - Breast invasive adenocarcinoma(625;5.73e-05)|Lung(200;0.0696)|LUSC - Lung squamous cell carcinoma(625;0.082)		GTAAGGAAGCCGTTTCTCAGA	0.547													4	10					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1097275	1097275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:1097275G>A	uc001lsx.1	+	38	13804	c.13777G>A	c.(13777-13779)GAG>AAG	p.E4593K		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4593	VWFD 4.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GGACATCCCCGAGCTGGGTGT	0.607													7	61					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1098761	1098761	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:1098761C>T	uc001lsx.1	+	40	14244	c.14217C>T	c.(14215-14217)GCC>GCT	p.A4739A		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4739						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CCTACGCAGCCCTCTGTGCCC	0.662													3	6					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1257585	1257585	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:1257585C>T	uc009ycr.1	+	40	5055	c.4929C>T	c.(4927-4929)GTC>GTT	p.V1643V	MUC5B_uc009yct.1_Intron|MUC5B_uc001ltb.2_Intron|MUC5B_uc001lta.2_Intron	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GCCACAGGGTCGGCTTCCGGC	0.692													10	26					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1261064	1261064	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:1261064T>C	uc009ycr.1	+	44	5824	c.5698T>C	c.(5698-5700)TTC>CTC	p.F1900L	MUC5B_uc001ltb.2_Missense_Mutation_p.F1210L|MUC5B_uc001lta.2_Missense_Mutation_p.F875L	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1207	Cys-rich.			Missing (in Ref. 2; AAC67545).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCAGCCCTTCTTCAATGAGGA	0.612													3	17					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1268568	1268568	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:1268568G>A	uc009ycr.1	+	50	12168	c.12042G>A	c.(12040-12042)GAG>GAA	p.E4014E	MUC5B_uc001ltb.2_Silent_p.E3489E	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3486	7 X Cys-rich subdomain repeats.|Thr-rich.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACATCACAGAGCCTTCCACGG	0.672													5	82					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1269216	1269216	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:1269216G>A	uc009ycr.1	+	50	12816	c.12690G>A	c.(12688-12690)ACG>ACA	p.T4230T	MUC5B_uc001ltb.2_Silent_p.T3705T	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3702	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CAGCCACTACGACTGAGTCCA	0.667													19	173					0	0	1	0	0
BRSK2	9024	broad.mit.edu	37	11	1466554	1466554	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:1466554G>A	uc001lti.2	+	10	1229	c.843G>A	c.(841-843)CAG>CAA	p.Q281Q	BRSK2_uc009ycv.1_Silent_p.Q281Q|BRSK2_uc001lth.1_Silent_p.Q281Q|BRSK2_uc001ltj.2_Silent_p.Q281Q|BRSK2_uc001ltk.2_RNA|BRSK2_uc001ltl.2_Silent_p.Q281Q|BRSK2_uc001ltm.2_Silent_p.Q327Q|BRSK2_uc001ltn.2_RNA|BRSK2_uc010qwx.1_RNA	NM_003957	NP_003948	Q8IWQ3	BRSK2_HUMAN	BR serine/threonine kinase 2	281					establishment of cell polarity|neuron differentiation		ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0		all_epithelial(84;4.17e-05)|Breast(177;0.000307)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00144)|Lung(200;0.0713)|LUSC - Lung squamous cell carcinoma(625;0.0842)		AACCAGAGCAGCCCATTCCTC	0.682													7	27					0	0	1	0	0
MOB2	81532	broad.mit.edu	37	11	1492538	1492538	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:1492538G>A	uc010qwz.1	-	4	667	c.477C>T	c.(475-477)TTC>TTT	p.F159F	MOB2_uc001lto.1_Silent_p.F43F|MOB2_uc001ltp.1_5'UTR|MOB2_uc001ltq.1_Silent_p.F122F|MOB2_uc010qwy.1_Silent_p.F43F	NM_053005	NP_443731	Q70IA6	MOB2_HUMAN	HCCA2 protein	128						nucleus|perinuclear region of cytoplasm	metal ion binding				0						ATTTTGTGGGGAACACGTCCT	0.592													6	13					0	0	1	0	0
KRTAP5-1	387264	broad.mit.edu	37	11	1606251	1606251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:1606251C>T	uc001ltu.1	-	1	263	c.229G>A	c.(229-231)GGG>AGG	p.G77R	LOC338651_uc009ycx.1_Intron|LOC338651_uc001ltt.1_Intron	NM_001005922	NP_001005922	Q6L8H4	KRA51_HUMAN	keratin associated protein 5-1	77	8 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CCACAGCCCCCCTTGGAGCCC	0.677													6	98					0	0	1	0	0
TNNT3	7140	broad.mit.edu	37	11	1944290	1944290	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:1944290G>A	uc001luu.3	+	3	242	c.30G>A	c.(28-30)GAG>GAA	p.E10E	TNNT3_uc001lun.2_Silent_p.E10E|TNNT3_uc001luw.3_Silent_p.E10E|TNNT3_uc001luo.3_Silent_p.E10E|TNNT3_uc001lup.3_Silent_p.E10E|TNNT3_uc001luq.3_Silent_p.E10E|TNNT3_uc001lur.2_Silent_p.E10E|TNNT3_uc010qxf.1_Silent_p.E10E|TNNT3_uc010qxg.1_Intron|TNNT3_uc001lut.1_RNA|TNNT3_uc001lus.1_RNA	NM_006757	NP_006748	P45378	TNNT3_HUMAN	troponin T3, skeletal, fast isoform 1	10					muscle filament sliding|regulation of ATPase activity|regulation of striated muscle contraction|skeletal muscle contraction	cytosol|troponin complex	calcium-dependent protein binding|tropomyosin binding|troponin C binding|troponin I binding			ovary(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00253)|Lung(200;0.0333)|LUSC - Lung squamous cell carcinoma(625;0.0826)		AACAGGTGGAGGGTAAGTGTA	0.463													10	132					0	0	1	0	0
TSSC4	10078	broad.mit.edu	37	11	2424185	2424185	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:2424185C>T	uc001lwj.2	+	4	683	c.322C>T	c.(322-324)CCA>TCA	p.P108S	TSSC4_uc001lwi.2_Missense_Mutation_p.P44S|TSSC4_uc001lwk.2_Missense_Mutation_p.P108S|TSSC4_uc001lwl.2_Missense_Mutation_p.P108S	NM_005706	NP_005697	Q9Y5U2	TSSC4_HUMAN	tumor suppressing subtransferable candidate 4	108											0		all_epithelial(84;0.000161)|Breast(177;0.000962)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|all_neural(188;0.0137)|Lung NSC(207;0.209)		BRCA - Breast invasive adenocarcinoma(625;0.00145)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGACGGGCTCCATCCTCTGT	0.657													67	385					0	0	1	0	0
TRPM5	29850	broad.mit.edu	37	11	2429124	2429124	+	Missense_Mutation	SNP	G	A	A	rs78068524		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:2429124G>A	uc001lwm.3	-	19	2810	c.2801C>T	c.(2800-2802)TCC>TTC	p.S934F	TRPM5_uc010qxl.1_Missense_Mutation_p.S934F|TRPM5_uc009ydn.2_Missense_Mutation_p.S936F	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	934	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		TGGGTGGGTGGAGCAGTTCAC	0.617													55	298					0	0	1	0	0
TRPM5	29850	broad.mit.edu	37	11	2429138	2429138	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:2429138G>A	uc001lwm.3	-	19	2796	c.2787C>T	c.(2785-2787)GCC>GCT	p.A929A	TRPM5_uc010qxl.1_Silent_p.A929A|TRPM5_uc009ydn.2_Silent_p.A931A	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	929	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		AGTTCACACGGGCTTCTGGAA	0.627													25	276					0	0	1	0	0
TRPM5	29850	broad.mit.edu	37	11	2434411	2434411	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:2434411C>T	uc001lwm.3	-	14	2058	c.2049G>A	c.(2047-2049)CTG>CTA	p.L683L	TRPM5_uc010qxl.1_Silent_p.L683L|TRPM5_uc009ydn.2_Silent_p.L685L	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	683	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCAGGCTGTCCAGGTCCTGCA	0.701													5	76					0	0	1	0	0
TRPM5	29850	broad.mit.edu	37	11	2439451	2439451	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:2439451C>T	uc001lwm.3	-	6	861	c.852G>A	c.(850-852)GAG>GAA	p.E284E	TRPM5_uc010qxl.1_Silent_p.E284E|TRPM5_uc009ydn.2_Silent_p.E286E	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	284	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity	p.V277_W293del(1)		ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		TGGGGAACTTCTCCTTAAACT	0.632													27	369					0	0	1	0	0
KCNQ1	3784	broad.mit.edu	37	11	2549161	2549161	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:2549161C>T	uc001lwn.2	+	2	498	c.390C>T	c.(388-390)TTC>TTT	p.F130F	KCNQ1_uc009ydo.1_3'UTR|KCNQ1_uc009ydp.1_5'UTR|KCNQ1_uc001lwo.2_Silent_p.F3F	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	130	Helical; Name=Segment S1; (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	CTTGCAGCTTCCTCATCGTCC	0.642													31	371					0	0	1	0	0
KCNQ1	3784	broad.mit.edu	37	11	2798227	2798227	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:2798227C>T	uc001lwn.2	+	14	1805	c.1697C>T	c.(1696-1698)TCC>TTC	p.S566F	KCNQ1_uc009ydp.1_Missense_Mutation_p.S350F|KCNQ1_uc001lwo.2_Missense_Mutation_p.S439F	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	566	Cytoplasmic (Potential).		S -> F (in LQT1).		blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	CTGGACCAGTCCATTGGGAAG	0.597													23	282					0	0	1	0	0
SLC22A18	5002	broad.mit.edu	37	11	2940591	2940591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:2940591C>T	uc001lwx.2	+	8	1036	c.818C>T	c.(817-819)GCC>GTC	p.A273V	SLC22A18_uc001lwy.2_Missense_Mutation_p.A273V|SLC22A18_uc001lwz.2_Missense_Mutation_p.A175V	NM_183233	NP_899056	Q96BI1	S22AI_HUMAN	tumor suppressing subtransferable candidate 5	273					excretion|organic cation transport	apical plasma membrane|cytoplasmic part|integral to membrane|nuclear envelope	drug:hydrogen antiporter activity|symporter activity|ubiquitin protein ligase binding			central_nervous_system(2)|ovary(1)	3		all_epithelial(84;0.000124)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)|all_lung(207;0.198)		BRCA - Breast invasive adenocarcinoma(625;0.00256)|LUSC - Lung squamous cell carcinoma(625;0.192)		CAGCTGGAGGCCGCCCAAGCT	0.647													44	274					0	0	1	0	0
LOC650368	650368	broad.mit.edu	37	11	3430027	3430027	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:3430027C>T	uc010qxs.1	+	11		c.1126C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						GACTGTGCTCCCTTTGGTTAT	0.557													4	29					0	0	1	0	0
ART5	116969	broad.mit.edu	37	11	3661130	3661130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:3661130G>A	uc001lyb.1	-	2	922	c.529C>T	c.(529-531)CGC>TGC	p.R177C	ART5_uc001lyc.1_Missense_Mutation_p.R177C|ART5_uc001lyd.2_Missense_Mutation_p.R177C|ART5_uc009yea.2_Missense_Mutation_p.R177C	NM_053017	NP_443750	Q96L15	NAR5_HUMAN	ADP-ribosyltransferase 5 precursor	177						extracellular region	NAD(P)+-protein-arginine ADP-ribosyltransferase activity			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0336)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGCCCAAGCGGACAGAGTCT	0.607													4	51					0	0	1	0	0
OR52B4	143496	broad.mit.edu	37	11	4388715	4388715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:4388715G>A	uc010qye.1	-	1	811	c.811C>T	c.(811-813)CCA>TCA	p.P271S		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATACAAGGTGGAATGTGGCGT	0.463													3	8					0	0	1	0	0
OR52I2	143502	broad.mit.edu	37	11	4608958	4608958	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:4608958C>T	uc010qyh.1	+	1	916	c.916C>T	c.(916-918)CTG>TTG	p.L306L		NM_001005170	NP_001005170	Q8NH67	O52I2_HUMAN	olfactory receptor, family 52, subfamily I,	306	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CACCCAAGTCCTGCTAGCTGA	0.517													6	45					0	0	1	0	0
TRIM68	55128	broad.mit.edu	37	11	4621926	4621926	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:4621926G>A	uc001lzf.1	-	7	1276	c.1038C>T	c.(1036-1038)ATC>ATT	p.I346I	TRIM68_uc001lzg.1_Silent_p.I123I|TRIM68_uc010qyj.1_RNA	NM_018073	NP_060543	Q6AZZ1	TRI68_HUMAN	ring finger protein 137	346	B30.2/SPRY.				protein autoubiquitination|regulation of androgen receptor signaling pathway	Golgi apparatus|nucleolus|perinuclear region of cytoplasm	androgen receptor binding|histone acetyltransferase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;9.49e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0288)|LUSC - Lung squamous cell carcinoma(625;0.192)		TTCCCAGGACGATATTATAGC	0.527													6	21					0	0	1	0	0
OR51F2	119694	broad.mit.edu	37	11	4843134	4843134	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:4843134C>T	uc010qyn.1	+	1	519	c.519C>T	c.(517-519)GTC>GTT	p.V173V		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	173	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGTTGCCAGTCATGCTCTTTG	0.443													6	88					0	0	1	0	0
OR51T1	401665	broad.mit.edu	37	11	4903171	4903171	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:4903171C>T	uc010qyp.1	+	1	123	c.123C>T	c.(121-123)TTC>TTT	p.F41F		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCTCAAACTTCCTCCTCACTG	0.413													5	21					0	0	1	0	0
OR51A7	119687	broad.mit.edu	37	11	4929304	4929304	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:4929304G>A	uc010qyq.1	+	1	705	c.705G>A	c.(703-705)AAG>AAA	p.K235K		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGAGGCTTAAGGCCCTAAATA	0.478													8	35					0	0	1	0	0
OR51A4	401666	broad.mit.edu	37	11	4967848	4967848	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:4967848G>A	uc010qys.1	-	1	483	c.483C>T	c.(481-483)TTC>TTT	p.F161F		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	161	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		AAGTGAAAGGGAAGGGAAGAA	0.433													6	91					0	0	1	0	0
OR51A4	401666	broad.mit.edu	37	11	4968016	4968016	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:4968016G>A	uc010qys.1	-	1	315	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATCCATGAATGAAGAATTCCT	0.443													5	76					0	0	1	0	0
MMP26	56547	broad.mit.edu	37	11	5013333	5013333	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5013333C>T	uc001lzv.2	+	5	753	c.735C>T	c.(733-735)ATC>ATT	p.I245I		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	245					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCGATGATATCCAAAGGATCC	0.448													3	21					0	0	1	0	0
OR52J3	119679	broad.mit.edu	37	11	5068517	5068517	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5068517C>T	uc010qyv.1	+	1	762	c.762C>T	c.(760-762)ATC>ATT	p.I254I		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	254	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTTTCTATATCCCTTCAGTCT	0.453													3	15					0	0	1	0	0
HBB	3043	broad.mit.edu	37	11	5247977	5247977	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5247977G>A	uc001mae.1	-	2	195	c.145C>T	c.(145-147)CTG>TTG	p.L49L		NM_000518	NP_000509	P68871	HBB_HUMAN	beta globin	49			L -> P (in Bab-Saadoum; slightly unstable).		blood coagulation|hydrogen peroxide catabolic process|nitric oxide transport|positive regulation of cell death|positive regulation of nitric oxide biosynthetic process|protein heterooligomerization|regulation of blood pressure|regulation of blood vessel size	haptoglobin-hemoglobin complex|hemoglobin complex	heme binding|hemoglobin binding|oxygen binding|oxygen transporter activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)	Iron Dextran(DB00893)	GGAGTGGACAGATCCCCAAAG	0.532									Sickle_Cell_Trait				4	40					0	0	1	0	0
OR51B4	79339	broad.mit.edu	37	11	5322895	5322895	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5322895G>A	uc010qza.1	-	1	282	c.282C>T	c.(280-282)GCC>GCT	p.A94A	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGTGAAACAGGCAGCATGGG	0.507													3	38					0	0	1	0	0
OR51M1	390059	broad.mit.edu	37	11	5411090	5411090	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5411090C>T	uc010qzc.1	+	1	462	c.462C>T	c.(460-462)GTC>GTT	p.V154V	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	154						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGCAAGTGGTCAGAGCAGGCC	0.547													6	163					0	0	1	0	0
OR51Q1	390061	broad.mit.edu	37	11	5443745	5443745	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5443745C>T	uc010qzd.1	+	1	315	c.315C>T	c.(313-315)TTC>TTT	p.F105F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGTTTTTCTTCCTTCATGGAT	0.512													11	87					0	0	1	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529462	5529462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5529462C>T	uc001may.1	-	2	1413	c.1327G>A	c.(1327-1329)GAT>AAT	p.D443N	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	443										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAGACAAGATCAGGCAAGTTT	0.537													6	50					0	0	1	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529719	5529719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5529719C>T	uc001may.1	-	2	1156	c.1070G>A	c.(1069-1071)GGA>GAA	p.G357E	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	357										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TAGATAAGTTCCTAGGGACTG	0.493													10	109					0	0	1	0	0
UBQLN3	50613	broad.mit.edu	37	11	5530148	5530148	+	Missense_Mutation	SNP	G	A	A	rs146605906	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5530148G>A	uc001may.1	-	2	727	c.641C>T	c.(640-642)CCG>CTG	p.P214L	HBG2_uc001mak.1_Intron	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	214										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CATAATTTCCGGGTTGTTAAG	0.512													9	95					0	0	1	0	0
UBQLNL	143630	broad.mit.edu	37	11	5536668	5536668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5536668C>T	uc001maz.3	-	1	1289	c.1004G>A	c.(1003-1005)AGC>AAC	p.S335N	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	335										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		ACCACCAGAGCTATTATAGAT	0.502													6	55					0	0	1	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537318	5537318	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5537318C>T	uc001maz.3	-	1	639	c.354G>A	c.(352-354)ACG>ACA	p.T118T	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	118										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		AGGGATCATTCGTTGGCAGGT	0.547													5	40					0	0	1	0	0
OR52B6	340980	broad.mit.edu	37	11	5602848	5602848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5602848C>T	uc010qzi.1	+	1	742	c.742C>T	c.(742-744)CTT>TTT	p.L248F	HBG2_uc001mak.1_Intron	NM_001005162	NP_001005162	Q8NGF0	O52B6_HUMAN	olfactory receptor, family 52, subfamily B,	248	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;3.56e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTTCCGCCTCCTTTCTCAAGA	0.502													8	136					0	0	1	0	0
OR52N5	390075	broad.mit.edu	37	11	5799669	5799669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5799669G>A	uc010qzn.1	-	1	196	c.196C>T	c.(196-198)CCG>TCG	p.P66S	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001922	NP_001001922	Q8NH56	O52N5_HUMAN	olfactory receptor, family 52, subfamily N,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		AAATACATCGGATGATGTAAG	0.453													3	2					0	0	1	0	0
OR52N2	390077	broad.mit.edu	37	11	5842231	5842231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5842231G>A	uc010qzp.1	+	1	666	c.666G>A	c.(664-666)ATG>ATA	p.M222I	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTTACACTATGATTTTGCAGG	0.433													5	35					0	0	1	0	0
OR56A3	390083	broad.mit.edu	37	11	5969438	5969438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:5969438C>T	uc010qzt.1	+	1	862	c.862C>T	c.(862-864)CCT>TCT	p.P288S		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCATGTCATTCCTGCAGCCCT	0.483													5	55					0	0	1	0	0
SMPD1	6609	broad.mit.edu	37	11	6415775	6415775	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:6415775C>T	uc001mcw.2	+	6	2008	c.1834C>T	c.(1834-1836)CTG>TTG	p.L612L	SMPD1_uc001mcv.1_RNA|SMPD1_uc009yex.2_RNA|SMPD1_uc001mcx.2_Silent_p.L568L|SMPD1_uc009yew.2_Silent_p.L611L	NM_000543	NP_000534	P17405	ASM_HUMAN	sphingomyelin phosphodiesterase 1, acid	610					cell death|ceramide biosynthetic process|negative regulation of MAP kinase activity|nervous system development|positive regulation of protein dephosphorylation|signal transduction|sphingomyelin catabolic process|termination of signal transduction	lysosome	hydrolase activity, acting on glycosyl bonds|sphingomyelin phosphodiesterase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;4.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)	Desipramine(DB01151)	GTGCCGCCACCTGATGCCAGA	0.647													9	58					0	0	1	0	0
OR10A2	341276	broad.mit.edu	37	11	6891438	6891438	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:6891438C>T	uc001meu.1	+	1	453	c.453C>T	c.(451-453)TTC>TTT	p.F151F		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	151	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		CATGGCTCTTCAGTTTTCCAT	0.527													7	95					0	0	1	0	0
NLRP14	338323	broad.mit.edu	37	11	7063691	7063691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:7063691G>A	uc001mfb.1	+	4	757	c.434G>A	c.(433-435)GGA>GAA	p.G145E		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	145					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		TCTTTGGCTGGAAAGCCTGAA	0.393													4	32					0	0	1	0	0
RBMXL2	27288	broad.mit.edu	37	11	7110456	7110456	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:7110456C>T	uc001mfc.2	+	1	292	c.105C>T	c.(103-105)GTC>GTT	p.V35V		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	35	RRM.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GCCGCATCGTCGAGGTGCTCC	0.597													4	11					0	0	1	0	0
RBMXL2	27288	broad.mit.edu	37	11	7111135	7111135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:7111135G>A	uc001mfc.2	+	1	971	c.784G>A	c.(784-786)GGC>AGC	p.G262S		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	262	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CGACCGAGACGGCTACGGAGG	0.667													7	25					0	0	1	0	0
RPL27A	6157	broad.mit.edu	37	11	8706416	8706416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:8706416C>T	uc001mgs.3	+	4	661	c.295C>T	c.(295-297)CCC>TCC	p.P99S	SNORA45_uc001mgr.1_5'Flank	NM_000990	NP_000981	P46776	RL27A_HUMAN	ribosomal protein L27a	99					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0				Epithelial(150;3.24e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TGGGGCTGCTCCCATCATTGA	0.433													22	96					0	0	1	0	0
SCUBE2	57758	broad.mit.edu	37	11	9069588	9069588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:9069588C>T	uc001mhh.1	-	14	1690	c.1610G>A	c.(1609-1611)GGC>GAC	p.G537D	SCUBE2_uc001mhi.1_Missense_Mutation_p.G566D|SCUBE2_uc001mhj.1_Intron	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	537						extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		GACTTGCTTGCCAGAGCTGCA	0.468													17	253					0	0	1	0	0
SCUBE2	57758	broad.mit.edu	37	11	9074744	9074744	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:9074744G>A	uc001mhh.1	-	12	1429	c.1349C>T	c.(1348-1350)CCC>CTC	p.P450L	SCUBE2_uc001mhi.1_Missense_Mutation_p.P450L|SCUBE2_uc001mhj.1_Intron	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	450						extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		CACACTTGTGGGCAGGAGCCC	0.522													4	40					0	0	1	0	0
SCUBE2	57758	broad.mit.edu	37	11	9077350	9077350	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:9077350G>A	uc001mhh.1	-	10	1277	c.1197C>T	c.(1195-1197)ACC>ACT	p.T399T	SCUBE2_uc001mhi.1_Silent_p.T399T|SCUBE2_uc001mhj.1_Silent_p.T399T	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	399	EGF-like 8; calcium-binding (Potential).					extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		CTCCACAGTGGGTGAAGCCAT	0.572													13	91					0	0	1	0	0
TMEM41B	440026	broad.mit.edu	37	11	9308057	9308057	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:9308057G>A	uc001mhm.2	-	6	959	c.651C>T	c.(649-651)ATC>ATT	p.I217I	TMEM41B_uc001mhn.1_Silent_p.I217I	NM_015012	NP_055827	Q5BJD5	TM41B_HUMAN	transmembrane protein 41B isoform 1	217	Helical; (Potential).					integral to membrane					0				all cancers(16;9.96e-08)|Epithelial(150;4.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0972)		CAGGAGATGTGATATTAATAA	0.338													11	106					0	0	1	0	0
RNF141	50862	broad.mit.edu	37	11	10546848	10546848	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:10546848C>G	uc001mis.1	-	4	478	c.325G>C	c.(325-327)GAT>CAT	p.D109H	RNF141_uc009yga.1_RNA|RNF141_uc001mit.1_Missense_Mutation_p.D109H	NM_016422	NP_057506	Q8WVD5	RN141_HUMAN	ring finger protein 141	109							zinc ion binding				0				all cancers(16;4.63e-08)|Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.064)		CTTGTGATATCTTTATAAAGT	0.378													4	42					0	0	1	0	0
MRVI1	10335	broad.mit.edu	37	11	10602036	10602036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:10602036C>T	uc010rcc.1	-	20	2847	c.2461G>A	c.(2461-2463)GAA>AAA	p.E821K	uc001miu.2_Intron|MRVI1_uc001miw.2_Missense_Mutation_p.E812K|MRVI1_uc010rcb.1_Missense_Mutation_p.E813K|MRVI1_uc009ygb.1_Missense_Mutation_p.E506K|MRVI1_uc001mix.2_Missense_Mutation_p.E506K|MRVI1_uc001miz.2_Missense_Mutation_p.E730K|MRVI1_uc009ygc.1_Missense_Mutation_p.E730K|MRVI1_uc010rcd.1_Missense_Mutation_p.E615K|MRVI1_uc009ygd.1_Missense_Mutation_p.E506K	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	794	Glu-rich.				platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		TCCTCAGTTTCTTCTACCTCT	0.458													9	93					0	0	1	0	0
CTR9	9646	broad.mit.edu	37	11	10778311	10778311	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:10778311C>T	uc001mja.2	+	5	667	c.518C>T	c.(517-519)TCC>TTC	p.S173F		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	173	TPR 3.				histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		GCTTGCATTTCCTTCAACAAG	0.318													9	67					0	0	1	0	0
MICAL2	9645	broad.mit.edu	37	11	12234920	12234920	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:12234920C>T	uc001mjz.2	+	7	1098	c.810C>T	c.(808-810)TTC>TTT	p.F270F	MICAL2_uc010rch.1_Silent_p.F270F|MICAL2_uc001mka.2_Silent_p.F270F|MICAL2_uc010rci.1_Silent_p.F270F|MICAL2_uc001mkb.2_Silent_p.F270F|MICAL2_uc001mkc.2_Silent_p.F270F|MICAL2_uc001mkd.2_Silent_p.F99F|MICAL2_uc001mke.2_5'Flank	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	270						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		CTTTCATCTTCAATCAGAAAT	0.468													8	101					0	0	1	0	0
BTBD10	84280	broad.mit.edu	37	11	13466629	13466629	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:13466629G>A	uc001mkz.2	-	2	300	c.43C>T	c.(43-45)CCA>TCA	p.P15S	BTBD10_uc001mla.2_Silent_p.I6I|BTBD10_uc009ygn.2_RNA|BTBD10_uc010rcm.1_Intron|BTBD10_uc009ygo.2_Intron	NM_032320	NP_115696	Q9BSF8	BTBDA_HUMAN	K+ channel tetramerization protein	15						nucleus					0				Epithelial(150;0.0214)		CAATTCTCTGGATCACTGGAG	0.438													4	35					0	0	1	0	0
PSMA1	5682	broad.mit.edu	37	11	14526751	14526751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:14526751G>A	uc001mlk.2	-	10	925	c.779C>T	c.(778-780)CCA>CTA	p.P260L	PSMA1_uc001mll.2_Missense_Mutation_p.P266L|PSMA1_uc010rcp.1_RNA|PSMA1_uc001mlj.2_Missense_Mutation_p.P235L	NM_002786	NP_002777	P25786	PSA1_HUMAN	proteasome alpha 1 subunit isoform 2	260					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|polysome|proteasome core complex, alpha-subunit complex	protein binding|RNA binding|threonine-type endopeptidase activity			upper_aerodigestive_tract(1)|skin(1)	2						ATGTTCCATTGGTTCATCAGC	0.338													7	109					0	0	1	0	0
INSC	387755	broad.mit.edu	37	11	15134028	15134028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:15134028C>T	uc001mly.2	+	1	59	c.13C>T	c.(13-15)CCT>TCT	p.P5S	INSC_uc001mlz.2_5'Flank	NM_001031853	NP_001027024	Q1MX18	INSC_HUMAN	inscuteable isoform a	5					cell differentiation|nervous system development	cytoplasm	binding	p.P5L(1)		upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)	5						GAGACGGCCCCCTGGCAATGG	0.622													5	44					0	0	1	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16822587	16822587	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:16822587C>T	uc001mmo.2	-	17	2358	c.2343G>A	c.(2341-2343)TTG>TTA	p.L781L	PLEKHA7_uc010rcu.1_Silent_p.L781L|PLEKHA7_uc010rcv.1_Silent_p.L355L|PLEKHA7_uc001mmn.2_Silent_p.L489L	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	781	Potential.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						CATCATTCTCCAACTTCAGGT	0.498													17	108					0	0	1	0	0
KCNJ11	3767	broad.mit.edu	37	11	17409006	17409006	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:17409006G>A	uc001mna.2	-	1	1201	c.633C>T	c.(631-633)ATC>ATT	p.I211I	KCNJ11_uc001mnb.3_Silent_p.I124I	NM_000525	NP_000516	B4DWI4	B4DWI4_HUMAN	potassium inwardly-rectifying channel J11	211						integral to membrane	ATP-activated inward rectifier potassium channel activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0276)|Colorectal(2;0.0633)		TGGTGGCGCTGATGATCATGC	0.637											OREG0020810	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	45	441					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17417237	17417237	+	Silent	SNP	G	A	A	rs146584228		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:17417237G>A	uc001mnc.2	-	35	4353	c.4227C>T	c.(4225-4227)ATC>ATT	p.I1409I		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1409	Cytoplasmic (By similarity).|ABC transporter 2.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GCAGTTTGGCGATGTCAATGC	0.632													32	305					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17418802	17418802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:17418802C>T	uc001mnc.2	-	32	4052	c.3926G>A	c.(3925-3927)GGG>GAG	p.G1309E		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1309	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CTTCACAGCCCCCAGCTGGAG	0.612													23	128					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17449875	17449875	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:17449875G>A	uc001mnc.2	-	14	2127	c.2001C>T	c.(1999-2001)GTC>GTT	p.V667V		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	667	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CTGCACTGGGGACCAGGCTCT	0.662													17	238					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17482217	17482217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:17482217C>T	uc001mnc.2	-	6	955	c.829G>A	c.(829-831)GAC>AAC	p.D277N	ABCC8_uc010rcy.1_Missense_Mutation_p.D276N	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	277	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CCCTGAATGTCCTTCCGCTGC	0.637													29	124					0	0	1	0	0
KCNC1	3746	broad.mit.edu	37	11	17757680	17757680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:17757680G>A	uc001mnk.3	+	1	186	c.131G>A	c.(130-132)AGC>AAC	p.S44N	KCNC1_uc009yhc.1_Missense_Mutation_p.S44N	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	44	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						GACGCCCACAGCCACTTCGAC	0.687													4	28					0	0	1	0	0
MRGPRX3	117195	broad.mit.edu	37	11	18159340	18159340	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:18159340C>T	uc001mnu.2	+	3	952	c.591C>T	c.(589-591)GTC>GTT	p.V197V		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	197	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						CCAGCCTGGTCCTGCTGGTCA	0.522													12	66					0	0	1	0	0
MRGPRX4	117196	broad.mit.edu	37	11	18194861	18194861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:18194861G>A	uc001mnv.1	+	1	478	c.58G>A	c.(58-60)GAG>AAG	p.E20K		NM_054032	NP_473373	Q96LA9	MRGX4_HUMAN	MAS-related GPR, member X4	20	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						CGGACGTGAGGAGACTCCTTG	0.547													15	93					0	0	1	0	0
MRGPRX4	117196	broad.mit.edu	37	11	18195506	18195506	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:18195506C>T	uc001mnv.1	+	1	1123	c.703C>T	c.(703-705)CTG>TTG	p.L235L		NM_054032	NP_473373	Q96LA9	MRGX4_HUMAN	MAS-related GPR, member X4	235	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						CTTCGGCATTCTGGGGGCCCT	0.522													4	27					0	0	1	0	0
SPTY2D1	144108	broad.mit.edu	37	11	18636190	18636190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:18636190G>A	uc001moy.2	-	3	1847	c.1631C>T	c.(1630-1632)TCC>TTC	p.S544F	SPTY2D1_uc010rdi.1_Missense_Mutation_p.S544F	NM_194285	NP_919261	Q68D10	SPT2_HUMAN	SPT2, Suppressor of Ty, domain containing 1	544	Ser-rich.									breast(1)	1						GATATTCTTGGAAGAAATTGT	0.498													15	80					0	0	1	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955477	18955477	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:18955477C>T	uc001mpg.2	-	1	1073	c.855G>A	c.(853-855)CAG>CAA	p.Q285Q		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	285	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						GCTTCAGGTTCTGCCTATTTT	0.522													9	91					0	0	1	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956061	18956061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:18956061G>A	uc001mpg.2	-	1	489	c.271C>T	c.(271-273)CCC>TCC	p.P91S		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	91	Extracellular (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						ATGGTATGGGGGATACTGATG	0.517													16	229					0	0	1	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956158	18956158	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:18956158C>T	uc001mpg.2	-	1	392	c.174G>A	c.(172-174)AGG>AGA	p.R58R		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	58	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						AGAAGGCGTTCCTGCGCATGC	0.572													11	167					0	0	1	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956219	18956219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:18956219G>A	uc001mpg.2	-	1	331	c.113C>T	c.(112-114)TCC>TTC	p.S38F		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	38	Helical; Name=1; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CCCGACAAGGGAAACGATGCA	0.557													5	195					0	0	1	0	0
CSRP3	8048	broad.mit.edu	37	11	19209754	19209755	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:19209754_19209755CC>TT	uc001mpk.2	-	3	326_327	c.209_210GG>AA	c.(208-210)GGG>GAA	p.G70E		NM_003476	NP_003467	P50461	CSRP3_HUMAN	cysteine and glycine-rich protein 3	70	Gly-rich.				cell differentiation|skeletal muscle tissue development	cytoskeleton|nucleus	protein binding|zinc ion binding				0						CATACCCGATCCCTTTGGGGCC	0.604													10	95					0	0	1	0	0
NAV2	89797	broad.mit.edu	37	11	20113831	20113831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:20113831C>T	uc001mpr.3	+	28	6102	c.5741C>T	c.(5740-5742)TCC>TTC	p.S1914F	NAV2_uc001mpp.2_Missense_Mutation_p.S1847F|NAV2_uc009yhx.2_Missense_Mutation_p.S975F|NAV2_uc009yhz.2_Missense_Mutation_p.S556F|NAV2_uc001mpu.2_Missense_Mutation_p.S349F	NM_182964	NP_892009	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 1	1970						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						CGGGCTCCTTCCCAAGTGTCC	0.562													8	80					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20628566	20628566	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:20628566C>T	uc001mqd.2	+	4	966	c.693C>T	c.(691-693)ATC>ATT	p.I231I	SLC6A5_uc009yic.2_5'UTR	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	231	Helical; Name=2; (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	CTTTCCTCATCCCTTACCTGA	0.582													5	81					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20636249	20636249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:20636249C>T	uc001mqd.2	+	6	1283	c.1010C>T	c.(1009-1011)CCC>CTC	p.P337L	SLC6A5_uc009yic.2_Missense_Mutation_p.P102L	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	337	Extracellular (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	AGTGACCATCCCAAAATACAG	0.413													5	66					0	0	1	0	0
ANO5	203859	broad.mit.edu	37	11	22291893	22291893	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:22291893G>A	uc001mqi.2	+	18	2251	c.1934G>A	c.(1933-1935)CGG>CAG	p.R645Q	ANO5_uc001mqj.2_Missense_Mutation_p.R644Q	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	645	Extracellular (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						CGAAAAGCTCGGACAAACTCT	0.413													7	27					0	0	1	0	0
LUZP2	338645	broad.mit.edu	37	11	25098952	25098952	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:25098952G>A	uc001mqs.2	+	11	1170	c.936G>A	c.(934-936)CAG>CAA	p.Q312Q	LUZP2_uc009yif.2_Silent_p.Q226Q|LUZP2_uc009yig.2_Silent_p.Q270Q	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	312						extracellular region				ovary(1)|skin(1)	2						CTATCCCACAGGTATGTGTTT	0.313													5	81					0	0	1	0	0
FIBIN	387758	broad.mit.edu	37	11	27016125	27016125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:27016125G>A	uc001mrd.2	+	1	498	c.52G>A	c.(52-54)GGC>AGC	p.G18S		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	18						extracellular region|Golgi apparatus					0						CCTGTGTCAAGGCTACTTCGA	0.527													4	60					0	0	1	0	0
FIBIN	387758	broad.mit.edu	37	11	27016166	27016166	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:27016166G>A	uc001mrd.2	+	1	539	c.93G>A	c.(91-93)GGG>GGA	p.G31G		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	31						extracellular region|Golgi apparatus					0						TGTCCAATGGGACTCTGCACC	0.542													7	41					0	0	1	0	0
KCNA4	3739	broad.mit.edu	37	11	30033975	30033975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:30033975C>T	uc001msk.2	-	2	1403	c.251G>A	c.(250-252)AGG>AAG	p.R84K		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	84				RRRRQ -> EEEAT (in Ref. 1; AAA60034).		voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TCGCCTCCTCCTCCGACTACC	0.632													5	60					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	30974044	30974044	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:30974044C>T	uc009yjk.1	-	9	1076	c.1007G>A	c.(1006-1008)TGG>TAG	p.W336*	uc009yjl.1_Intron|DCDC1_uc001msu.1_Nonsense_Mutation_p.W507*					RecName: Full=Doublecortin domain-containing protein 5;																		AAGCTTGTTCCATAGAGGATT	0.408													4	12					0	0	1	0	0
PAX6	5080	broad.mit.edu	37	11	31816309	31816309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:31816309C>T	uc001mtd.3	-	7	1441	c.551G>A	c.(550-552)GGA>GAA	p.G184E	PAX6_uc001mte.3_Missense_Mutation_p.G184E|PAX6_uc001mtg.3_Missense_Mutation_p.G198E|PAX6_uc001mtf.3_Missense_Mutation_p.G184E|PAX6_uc001mth.3_Missense_Mutation_p.G184E|PAX6_uc009yjr.2_Missense_Mutation_p.G184E	NM_001127612	NP_001121084	P26367	PAX6_HUMAN	paired box gene 6 isoform a	184	Gln/Gly-rich.				blood vessel development|central nervous system development|cornea development in camera-type eye|glucose homeostasis|iris morphogenesis|negative regulation of neurogenesis|neuron fate commitment|pancreatic A cell development|positive regulation of transcription, DNA-dependent|response to wounding|visual perception	cytoplasm|nuclear chromatin	R-SMAD binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|ubiquitin-protein ligase activity			lung(4)|ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	9	Lung SC(675;0.225)					GGTATTCTCTCCCCCTCCTTC	0.463									Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				4	79					0	0	1	0	0
QSER1	79832	broad.mit.edu	37	11	32956541	32956541	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:32956541C>T	uc001mty.2	+	4	3617	c.3350C>T	c.(3349-3351)TCC>TTC	p.S1117F	QSER1_uc001mtz.1_Missense_Mutation_p.S878F|QSER1_uc001mua.2_Missense_Mutation_p.S622F	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	1117										ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					ACTCCTCCTTCCTCAGAAAGC	0.418													4	45					0	0	1	0	0
C11orf41	25758	broad.mit.edu	37	11	33682473	33682473	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:33682473C>T	uc001mup.3	+	19	5323	c.5199C>T	c.(5197-5199)TTC>TTT	p.F1733F		NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	1727						integral to membrane				ovary(2)	2						CCGGCTACTTCATCCCAACGC	0.572													4	17					0	0	1	0	0
CAPRIN1	4076	broad.mit.edu	37	11	34104504	34104504	+	Nonsense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:34104504T>G	uc001mvh.1	+	9	1071	c.882T>G	c.(880-882)TAT>TAG	p.Y294*	CAPRIN1_uc001mvg.2_Nonsense_Mutation_p.Y294*|CAPRIN1_uc001mvi.2_Nonsense_Mutation_p.Y294*|CAPRIN1_uc001mvj.1_Nonsense_Mutation_p.Y213*	NM_005898	NP_005889	Q14444	CAPR1_HUMAN	membrane component chromosome 11 surface marker	294					negative regulation of translation|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis	cytoplasmic mRNA processing body|cytosol|dendrite|integral to plasma membrane|stress granule	protein binding|RNA binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.00045)|all_hematologic(20;0.0016)				CTTTGCAGTATGTAAATAGAC	0.383													6	33					0	0	1	0	0
CD44	960	broad.mit.edu	37	11	35226065	35226065	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:35226065C>G	uc001mvu.2	+	10	1594	c.1160C>G	c.(1159-1161)GCA>GGA	p.A387G	CD44_uc001mvv.2_Missense_Mutation_p.A344G|CD44_uc001mvw.2_Intron|CD44_uc001mvx.2_Intron|CD44_uc001mvy.2_Intron|CD44_uc001mwc.3_Intron|CD44_uc010rer.1_Intron|CD44_uc009ykh.2_Intron|CD44_uc010res.1_Intron|CD44_uc010ret.1_Intron|CD44_uc010reu.1_Intron	NM_000610	NP_000601	P16070	CD44_HUMAN	CD44 antigen isoform 1 precursor	387	Extracellular (Potential).|Stem.				cell-cell adhesion|cell-matrix adhesion|interferon-gamma-mediated signaling pathway|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation	cell surface|Golgi apparatus|integral to plasma membrane	collagen binding|hyaluronic acid binding|receptor activity			pancreas(1)	1	all_cancers(35;0.212)|all_lung(20;0.0874)|all_epithelial(35;0.112)	all_hematologic(20;0.107)	STAD - Stomach adenocarcinoma(6;0.00731)		Hyaluronidase(DB00070)	ACAGTCCAGGCAACTCCTAGT	0.438													2	11					0	0	1	0	0
SLC1A2	6506	broad.mit.edu	37	11	35339031	35339031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:35339031C>T	uc001mwd.2	-	2	642	c.50G>A	c.(49-51)CGA>CAA	p.R17Q	SLC1A2_uc001mwe.2_Missense_Mutation_p.R8Q|SLC1A2_uc010rev.1_Missense_Mutation_p.R17Q	NM_004171	NP_004162	P43004	EAA2_HUMAN	excitatory amino acid transporter 2	17	Cytoplasmic (Potential).				D-aspartate import|L-glutamate import|synaptic transmission	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|central_nervous_system(1)	3	all_lung(20;0.211)|all_epithelial(35;0.234)	all_hematologic(20;0.109)	STAD - Stomach adenocarcinoma(6;0.00731)		L-Glutamic Acid(DB00142)	GTCGTGCATTCGCACTTCCAC	0.567													12	226					0	0	1	0	0
PAMR1	25891	broad.mit.edu	37	11	35461220	35461220	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:35461220G>A	uc001mwg.2	-	8	1098	c.1055C>T	c.(1054-1056)TCA>TTA	p.S352L	PAMR1_uc001mwf.2_Missense_Mutation_p.S369L|PAMR1_uc010rew.1_Missense_Mutation_p.S241L|PAMR1_uc010rex.1_Missense_Mutation_p.S312L	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	352					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						CACCAGGTCTGAAATCTTTGG	0.438													9	60					0	0	1	0	0
LDLRAD3	143458	broad.mit.edu	37	11	36057669	36057669	+	Silent	SNP	C	A	A	rs149080200		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:36057669C>A	uc001mwk.1	+	2	100	c.63C>A	c.(61-63)CCC>CCA	p.P21P	LDLRAD3_uc010rey.1_Intron|LDLRAD3_uc010rez.1_Intron	NM_174902	NP_777562	Q86YD5	LRAD3_HUMAN	low density lipoprotein receptor class A domain	21	Extracellular (Potential).					integral to membrane	receptor activity			central_nervous_system(1)	1	all_lung(20;0.089)|Lung NSC(22;0.175)|all_epithelial(35;0.177)	all_hematologic(20;0.124)				AGCTGCTCCCCGGGAACAACT	0.592													13	48					0.000151284	0.000152908	1	1	0
RAG1	5896	broad.mit.edu	37	11	36595296	36595296	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:36595296G>A	uc001mwu.3	+	2	566	c.442G>A	c.(442-444)GCT>ACT	p.A148T	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	148	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				GGAAAAGAGAGCTACTTCCTG	0.493									Familial_Hemophagocytic_Lymphohistiocytosis				3	21					0	0	1	0	0
RAG2	5897	broad.mit.edu	37	11	36615118	36615118	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:36615118G>A	uc001mwv.3	-	2	789	c.601C>T	c.(601-603)CAG>TAG	p.Q201*	C11orf74_uc010rfd.1_5'Flank|C11orf74_uc001mww.1_5'Flank|C11orf74_uc001mwx.1_5'Flank|C11orf74_uc001mwy.1_5'Flank|C11orf74_uc001mwz.1_5'Flank|C11orf74_uc010rfe.1_5'Flank	NM_000536	NP_000527	P55895	RAG2_HUMAN	recombination activating gene 2	201					chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			skin(3)|ovary(1)|pancreas(1)	5	all_lung(20;0.226)	all_hematologic(20;0.00756)				AGCCCATCCTGAAGTTCTGGA	0.418									Familial_Hemophagocytic_Lymphohistiocytosis				5	41					0	0	1	0	0
C11orf74	119710	broad.mit.edu	37	11	36669621	36669621	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:36669621C>T	uc001mwy.1	+	5	487	c.414C>T	c.(412-414)TCC>TCT	p.S138S	C11orf74_uc010rfd.1_RNA|C11orf74_uc001mww.1_Silent_p.S64S|C11orf74_uc001mwx.1_RNA|C11orf74_uc001mwz.1_Silent_p.S64S|C11orf74_uc010rfe.1_RNA	NM_138787	NP_620142	Q86VG3	CK074_HUMAN	hypothetical protein LOC119710	138											0	all_lung(20;0.226)	all_hematologic(20;0.0118)				GCATTCCTTCCTGTATCCCTT	0.478													3	24					0	0	1	0	0
ACCS	84680	broad.mit.edu	37	11	44105088	44105088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:44105088C>T	uc009yks.1	+	14	1513	c.1369C>T	c.(1369-1371)CGC>TGC	p.R457C	EXT2_uc010rfo.1_Intron|ACCS_uc001mxx.2_Missense_Mutation_p.R457C	NM_001127219	NP_001120691	Q96QU6	1A1L1_HUMAN	1-aminocyclopropane-1-carboxylate synthase	457							1-aminocyclopropane-1-carboxylate synthase activity|protein homodimerization activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			breast(2)|ovary(1)|lung(1)	4						TGGTTGGTTTCGCTTTGTCTT	0.567													8	62					0	0	1	0	0
PRDM11	56981	broad.mit.edu	37	11	45203369	45203369	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:45203369G>T	uc001myo.2	+	3	403	c.154G>T	c.(154-156)GAT>TAT	p.D52Y		NM_020229	NP_064614	Q9NQV5	PRD11_HUMAN	PR domain containing 11	52										upper_aerodigestive_tract(1)	1						AGCCGTGGGGGATATGGTGAC	0.602													9	45					0.00448238	0.00451868	1	1	0
PRDM11	56981	broad.mit.edu	37	11	45241245	45241245	+	Missense_Mutation	SNP	G	A	A	rs145462396		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:45241245G>A	uc001myo.2	+	7	1030	c.781G>A	c.(781-783)GAG>AAG	p.E261K		NM_020229	NP_064614	Q9NQV5	PRD11_HUMAN	PR domain containing 11	261	SET.									upper_aerodigestive_tract(1)	1						CTGGTACAGCGAGGACTACAT	0.627													6	27					0	0	1	0	0
CHST1	8534	broad.mit.edu	37	11	45671422	45671422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:45671422C>T	uc001mys.1	-	4	1723	c.1052G>A	c.(1051-1053)CGA>CAA	p.R351Q		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	351	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		CGCCGAGTTTCGCACGGTGCC	0.682													6	65					0	0	1	0	0
MAPK8IP1	9479	broad.mit.edu	37	11	45919642	45919643	+	Missense_Mutation	DNP	CC	AT	AT	rs145799284	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:45919642_45919643CC>AT	uc001nbr.2	+	2	278_279	c.108_109CC>AT	c.(106-111)ACCCAT>ACATAT	p.H37Y	MAPK8IP1_uc010rgp.1_Missense_Mutation_p.H21Y	NM_005456	NP_005447	Q9UQF2	JIP1_HUMAN	mitogen-activated protein kinase 8 interacting	37					vesicle-mediated transport	nucleus|perinuclear region of cytoplasm	kinesin binding|MAP-kinase scaffold activity|protein kinase inhibitor activity			ovary(2)|breast(1)|skin(1)	4				GBM - Glioblastoma multiforme(35;0.231)		CCAGGCTCACCCATGACATCAG	0.545													5	26					0	0	1	0	0
MAPK8IP1	9479	broad.mit.edu	37	11	45925556	45925556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:45925556G>A	uc001nbr.2	+	7	1680	c.1510G>A	c.(1510-1512)GAA>AAA	p.E504K		NM_005456	NP_005447	Q9UQF2	JIP1_HUMAN	mitogen-activated protein kinase 8 interacting	504	SH3.				vesicle-mediated transport	nucleus|perinuclear region of cytoplasm	kinesin binding|MAP-kinase scaffold activity|protein kinase inhibitor activity			ovary(2)|breast(1)|skin(1)	4				GBM - Glioblastoma multiforme(35;0.231)		GCCTCGACACGAAGACGAACT	0.602													6	80					0	0	1	0	0
GYLTL1B	120071	broad.mit.edu	37	11	45945067	45945067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:45945067G>A	uc001nbv.1	+	3	440	c.329G>A	c.(328-330)CGA>CAA	p.R110Q	GYLTL1B_uc001nbw.1_Missense_Mutation_p.R79Q|GYLTL1B_uc001nbx.1_Missense_Mutation_p.R110Q|GYLTL1B_uc001nby.1_5'Flank	NM_152312	NP_689525	Q8N3Y3	LARG2_HUMAN	glycosyltransferase-like 1B	110	Lumenal (Potential).				muscle cell homeostasis	Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.226)		AACTCCAGCCGAGACGTCATC	0.642													13	96					0	0	1	0	0
GYLTL1B	120071	broad.mit.edu	37	11	45949844	45949844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:45949844G>A	uc001nbv.1	+	13	1982	c.1871G>A	c.(1870-1872)CGA>CAA	p.R624Q	GYLTL1B_uc001nbw.1_Missense_Mutation_p.R593Q|GYLTL1B_uc001nbx.1_Missense_Mutation_p.R624Q|GYLTL1B_uc001nby.1_Missense_Mutation_p.R307Q|GYLTL1B_uc001nbz.1_Intron	NM_152312	NP_689525	Q8N3Y3	LARG2_HUMAN	glycosyltransferase-like 1B	624	Lumenal (Potential).				muscle cell homeostasis	Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.226)		GTGGTGCCACGAGACTGTCCC	0.637													15	169					0	0	1	0	0
PHF21A	51317	broad.mit.edu	37	11	45967506	45967506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:45967506G>A	uc001ncc.3	-	14	1958	c.1334C>T	c.(1333-1335)CCA>CTA	p.P445L	PHF21A_uc001ncb.3_Intron|PHF21A_uc009ykx.2_Intron|PHF21A_uc001nce.2_Missense_Mutation_p.P446L|PHF21A_uc001nca.1_Missense_Mutation_p.P181L	NM_001101802	NP_001095272	Q96BD5	PF21A_HUMAN	BRAF35/HDAC2 complex isoform a	445					blood coagulation|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						GGGGGATGTTGGGGTAAGGGC	0.517													7	98					0	0	1	0	0
DGKZ	8525	broad.mit.edu	37	11	46392918	46392918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:46392918C>T	uc001ncn.1	+	8	1315	c.1190C>T	c.(1189-1191)TCG>TTG	p.S397L	DGKZ_uc001nch.1_Missense_Mutation_p.S225L|DGKZ_uc010rgq.1_Missense_Mutation_p.S152L|DGKZ_uc001ncj.1_Missense_Mutation_p.S175L|DGKZ_uc010rgr.1_Missense_Mutation_p.S174L|DGKZ_uc001nck.1_5'UTR|DGKZ_uc001ncl.2_Missense_Mutation_p.S209L|DGKZ_uc001ncm.2_Missense_Mutation_p.S208L|DGKZ_uc009yky.1_Missense_Mutation_p.S209L|DGKZ_uc010rgs.1_Missense_Mutation_p.S186L	NM_001105540	NP_001099010	Q13574	DGKZ_HUMAN	diacylglycerol kinase zeta isoform 4	397	Phorbol-ester/DAG-type 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell migration|intracellular signal transduction|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of mitotic cell cycle|platelet activation	cytoplasm|lamellipodium|nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|diacylglycerol kinase activity|lipid kinase activity|metal ion binding|protein binding|protein C-terminus binding			pancreas(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.0259)|Lung(87;0.141)		ATCAGCTGCTCGTGGTGCAAG	0.642													8	95					0	0	1	0	0
CHRM4	1132	broad.mit.edu	37	11	46406977	46406977	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:46406977G>A	uc001nct.1	-	1	1131	c.1131C>T	c.(1129-1131)TTC>TTT	p.F377F		NM_000741	NP_000732	P08173	ACM4_HUMAN	cholinergic receptor, muscarinic 4	377	Cytoplasmic (By similarity).				cell proliferation	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity				0				GBM - Glioblastoma multiforme(35;0.0254)|Lung(87;0.14)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)|Tropicamide(DB00809)	CGATGCTGGCGAACTTGCGGG	0.612													12	121					0	0	1	0	0
CHRM4	1132	broad.mit.edu	37	11	46408064	46408064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:46408064G>A	uc001nct.1	-	1	44	c.44C>T	c.(43-45)TCC>TTC	p.S15F		NM_000741	NP_000732	P08173	ACM4_HUMAN	cholinergic receptor, muscarinic 4	15	Extracellular (By similarity).				cell proliferation	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity				0				GBM - Glioblastoma multiforme(35;0.0254)|Lung(87;0.14)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)|Tropicamide(DB00809)	CAGGCGCACGGACTGATTGCC	0.577													7	85					0	0	1	0	0
AMBRA1	55626	broad.mit.edu	37	11	46564525	46564525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:46564525G>A	uc010rgu.1	-	7	1402	c.1042C>T	c.(1042-1044)CCC>TCC	p.P348S	AMBRA1_uc010rgt.1_5'UTR|AMBRA1_uc009ylc.1_Missense_Mutation_p.P348S|AMBRA1_uc001ncu.1_Missense_Mutation_p.P258S|AMBRA1_uc001ncv.2_Missense_Mutation_p.P258S|AMBRA1_uc001ncw.2_Missense_Mutation_p.P258S|AMBRA1_uc001ncx.2_Missense_Mutation_p.P348S	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	348					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		GGATGGAAGGGCTCGGTCTGT	0.612													21	89					0	0	1	0	0
AMBRA1	55626	broad.mit.edu	37	11	46564927	46564927	+	Missense_Mutation	SNP	G	A	A	rs139294318	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:46564927G>A	uc010rgu.1	-	7	1000	c.640C>T	c.(640-642)CCC>TCC	p.P214S	AMBRA1_uc010rgt.1_5'Flank|AMBRA1_uc009ylc.1_Missense_Mutation_p.P214S|AMBRA1_uc001ncu.1_Missense_Mutation_p.P214S|AMBRA1_uc001ncv.2_Missense_Mutation_p.P214S|AMBRA1_uc001ncw.2_Missense_Mutation_p.P214S|AMBRA1_uc001ncx.2_Missense_Mutation_p.P214S	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	214					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		CCATCTATGGGGATCTCTGGT	0.527													7	64					0	0	1	0	0
ZNF408	79797	broad.mit.edu	37	11	46723068	46723068	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:46723068C>T	uc001nde.1	+	2	402	c.172C>T	c.(172-174)CCC>TCC	p.P58S	ARHGAP1_uc001ndd.2_5'Flank|ARHGAP1_uc009yle.1_5'Flank|ARHGAP1_uc009ylf.1_5'Flank|ZNF408_uc010rgw.1_Missense_Mutation_p.P50S	NM_024741	NP_079017	Q9H9D4	ZN408_HUMAN	zinc finger protein 408	58					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding				0						AAAGAGCCTTCCCCGGGGCTT	0.667													7	76					0	0	1	0	0
F2	2147	broad.mit.edu	37	11	46748384	46748384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:46748384C>T	uc001ndf.3	+	9	1170	c.1127C>T	c.(1126-1128)CCT>CTT	p.P376L	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	376	Peptidase S1.				activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	GGCATGTCACCTTGGTGTGTC	0.597													7	108					0	0	1	0	0
CKAP5	9793	broad.mit.edu	37	11	46771899	46771899	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:46771899G>A	uc001ndi.1	-	42	5739	c.5629C>T	c.(5629-5631)CAG>TAG	p.Q1877*	CKAP5_uc009ylg.1_Nonsense_Mutation_p.Q1770*|CKAP5_uc001ndj.1_Nonsense_Mutation_p.Q1817*|CKAP5_uc001ndh.1_Nonsense_Mutation_p.Q806*	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	1877					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						ACATAGCTCTGGAAGAACTGT	0.428													5	23					0	0	1	0	0
LRP4	4038	broad.mit.edu	37	11	46898295	46898295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:46898295C>T	uc001ndn.3	-	24	3510	c.3364G>A	c.(3364-3366)GGG>AGG	p.G1122R		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	1122	Extracellular (Potential).|LDL-receptor class B 11.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		GAAGGCCCACCTGTGGTGATG	0.537													10	103					0	0	1	0	0
LRP4	4038	broad.mit.edu	37	11	46916759	46916759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:46916759C>T	uc001ndn.3	-	11	1413	c.1267G>A	c.(1267-1269)GGC>AGC	p.G423S		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	423	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		AGTTCATAGCCTGTTTCACAC	0.612													4	66					0	0	1	0	0
LRP4	4038	broad.mit.edu	37	11	46920971	46920971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:46920971C>T	uc001ndn.3	-	5	660	c.514G>A	c.(514-516)GAC>AAC	p.D172N	LRP4_uc009ylh.1_Missense_Mutation_p.D123N	NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	172	Extracellular (Potential).|LDL-receptor class A 4.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		TCTTTGCAGTCGGTGTCACCG	0.582													11	84					0	0	1	0	0
CELF1	10658	broad.mit.edu	37	11	47493861	47493861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:47493861G>A	uc001nfl.2	-	12	1392	c.1382C>T	c.(1381-1383)TCC>TTC	p.S461F	CELF1_uc001nfk.1_5'Flank|CELF1_uc001nfm.2_Missense_Mutation_p.S458F|CELF1_uc001nfn.2_Missense_Mutation_p.S457F|CELF1_uc001nfo.1_Missense_Mutation_p.S487F|CELF1_uc010rhm.1_Missense_Mutation_p.S460F|CELF1_uc001nfp.2_Missense_Mutation_p.S489F|CELF1_uc001nfq.1_Missense_Mutation_p.S461F|CELF1_uc001nfr.1_Missense_Mutation_p.S461F	NM_001025596	NP_001020767	Q92879	CELF1_HUMAN	CUG triplet repeat, RNA-binding protein 1	461	RRM 3.				embryo development|mRNA splice site selection|regulation of RNA splicing|RNA interference	cytoplasm|nucleus|ribonucleoprotein complex	BRE binding|mRNA binding|nucleotide binding|translation repressor activity, nucleic acid binding			central_nervous_system(2)|ovary(1)	3						GCCGTTCATGGACTGGATGGC	0.502													6	119					0	0	1	0	0
FNBP4	23360	broad.mit.edu	37	11	47776086	47776086	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:47776086G>A	uc009ylv.2	-	3	597	c.444C>T	c.(442-444)TTC>TTT	p.F148F	FNBP4_uc001ngj.2_Silent_p.F55F|FNBP4_uc001ngl.2_Intron	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	148										ovary(1)	1						TAACCGCTAGGAAGTTGGCCA	0.403													4	44					0	0	1	0	0
NUP160	23279	broad.mit.edu	37	11	47843341	47843341	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:47843341C>T	uc001ngm.2	-	9	1297	c.1212G>A	c.(1210-1212)ACG>ACA	p.T404T	NUP160_uc009ylw.2_RNA	NM_015231	NP_056046	Q12769	NU160_HUMAN	nucleoporin 160kDa	404					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7						CCCAGATATCCGTGGAAGTTA	0.413													9	60					0	0	1	0	0
OR4B1	119765	broad.mit.edu	37	11	48238638	48238638	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:48238638G>A	uc010rhs.1	+	1	277	c.277G>A	c.(277-279)GAA>AAA	p.E93K		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						CATCTCTCTGGAAGGCTGTCT	0.448													7	46					0	0	1	0	0
OR4S1	256148	broad.mit.edu	37	11	48328235	48328235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:48328235C>T	uc010rhu.1	+	1	461	c.461C>T	c.(460-462)TCC>TTC	p.S154F		NM_001004725	NP_001004725	Q8NGB4	OR4S1_HUMAN	olfactory receptor, family 4, subfamily S,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TTCCTGCATTCCATCCTGCAG	0.557													8	53					0	0	1	0	0
OR4A47	403253	broad.mit.edu	37	11	48511028	48511028	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:48511028G>A	uc010rhx.1	+	1	684	c.684G>A	c.(682-684)CAG>CAA	p.Q228Q		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ACCTTAGTCAGAAAGGGAGGC	0.438													3	18					0	0	1	0	0
OR4C13	283092	broad.mit.edu	37	11	49974046	49974046	+	Silent	SNP	C	T	T	rs146933611	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:49974046C>T	uc010rhz.1	+	1	72	c.72C>T	c.(70-72)ATC>ATT	p.I24I		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	24	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						TGCAGAAAATCATATTTGTTG	0.388													5	30					0	0	1	0	0
OR4C13	283092	broad.mit.edu	37	11	49974457	49974457	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:49974457C>T	uc010rhz.1	+	1	483	c.483C>T	c.(481-483)ATC>ATT	p.I161I		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						TCCTCTTCATCTGTCAATTAC	0.443													7	34					0	0	1	0	0
OR4A16	81327	broad.mit.edu	37	11	55111547	55111547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:55111547G>A	uc010rie.1	+	1	871	c.871G>A	c.(871-873)GAG>AAG	p.E291K		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	291	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						GAGACAATCAGAGATGAAAAA	0.323													3	2					0	0	1	0	0
OR4C15	81309	broad.mit.edu	37	11	55322195	55322195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:55322195C>T	uc010rig.1	+	1	413	c.413C>T	c.(412-414)TCC>TTC	p.S138F		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATTGTAGACTCCCTCTATGTG	0.488										HNSCC(20;0.049)			14	64					0	0	1	0	0
OR4C15	81309	broad.mit.edu	37	11	55322618	55322618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:55322618G>A	uc010rig.1	+	1	836	c.836G>A	c.(835-837)AGA>AAA	p.R279K		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTCTCTCTGAGAACACACAGT	0.443										HNSCC(20;0.049)			4	63					0	0	1	0	0
OR5L1	219437	broad.mit.edu	37	11	55579077	55579077	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:55579077G>A	uc001nhw.1	+	1	135	c.135G>A	c.(133-135)ATG>ATA	p.M45I		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				ACCTGGGCATGATTGCACTGA	0.488													9	102					0	0	1	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798437	55798437	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:55798437C>T	uc010riw.1	+	1	543	c.543C>T	c.(541-543)ATC>ATT	p.I181I		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	181	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					TCTGTGATATCCCACCTCTTC	0.428													15	76					0	0	1	0	0
OR5T2	219464	broad.mit.edu	37	11	56000149	56000149	+	Silent	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:56000149A>G	uc010rjc.1	-	1	513	c.513T>C	c.(511-513)TAT>TAC	p.Y171Y		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	171	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TGCTCACTGAATACAGGAGAG	0.443													10	70					0	0	1	0	0
OR5T3	390154	broad.mit.edu	37	11	56020129	56020129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:56020129C>T	uc010rjd.1	+	1	454	c.454C>T	c.(454-456)CAC>TAC	p.H152Y		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	152	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					GGCTTATGATCACTATGTAGC	0.408													10	87					0	0	1	0	0
OR5T1	390155	broad.mit.edu	37	11	56043514	56043514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:56043514C>T	uc001nio.1	+	1	400	c.400C>T	c.(400-402)CGC>TGC	p.R134C		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					GGCTTATGATCGCTATGTAGC	0.413													10	40					0	0	1	0	0
OR5M8	219484	broad.mit.edu	37	11	56258333	56258333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:56258333C>T	uc001nix.1	-	1	514	c.514G>A	c.(514-516)GAA>AAA	p.E172K		NM_001005282	NP_001005282	Q8NGP6	OR5M8_HUMAN	olfactory receptor, family 5, subfamily M,	172	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	Esophageal squamous(21;0.00352)					TGATTAATTTCATTGGGGCCA	0.498													11	80					0	0	1	0	0
OR5M10	390167	broad.mit.edu	37	11	56344324	56344324	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:56344324G>A	uc001niz.1	-	1	874	c.874C>T	c.(874-876)CTA>TTA	p.L292L		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGTTCCGTAGGCTATAGATC	0.388													15	174					0	0	1	0	0
OR5AP2	338675	broad.mit.edu	37	11	56409013	56409013	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:56409013C>T	uc001njb.1	-	1	903	c.903G>A	c.(901-903)AAG>AAA	p.K301K		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						TTTTTACATCCTTATTTTTTA	0.343													3	30					0	0	1	0	0
OR9G4	283189	broad.mit.edu	37	11	56510346	56510346	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:56510346C>T	uc010rjo.1	-	1	942	c.942G>A	c.(940-942)GAG>GAA	p.E314E		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	314	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TCCTGAAGGCCTCTTTGATAT	0.408													5	51					0	0	1	0	0
OR5AK2	390181	broad.mit.edu	37	11	56757090	56757090	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:56757090G>A	uc010rjp.1	+	1	702	c.702G>A	c.(700-702)AGG>AGA	p.R234R		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GTGCAGGAAGGAAAAAATCCT	0.423													6	20					0	0	1	0	0
LRRC55	219527	broad.mit.edu	37	11	56949699	56949699	+	Missense_Mutation	SNP	G	A	A	rs112411315		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:56949699G>A	uc001njl.1	+	1	479	c.332G>A	c.(331-333)CGA>CAA	p.R111Q		NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	81	LRR 1.					integral to membrane					0						ATGGACACCCGAAACCTCAGC	0.597													5	30					0	0	1	0	0
LRRC55	219527	broad.mit.edu	37	11	56954853	56954853	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:56954853T>C	uc001njl.1	+	2	1072	c.925T>C	c.(925-927)TTC>CTC	p.F309L	LRRC55_uc001njm.1_5'Flank	NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	279	Helical; (Potential).					integral to membrane					0						GTTCGTGGGCTTCGTGGTCTC	0.582													4	56					0	0	1	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57087659	57087659	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:57087659G>A	uc001njr.2	-	2	934	c.622C>T	c.(622-624)CCC>TCC	p.P208S	TNKS1BP1_uc001njs.2_Missense_Mutation_p.P208S|TNKS1BP1_uc009ymd.1_5'UTR	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	208	Pro-rich.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				TCATCCCTGGGAGCAGTGGTC	0.637													5	76					0	0	1	0	0
SMTNL1	219537	broad.mit.edu	37	11	57310494	57310494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:57310494G>A	uc009ymh.1	+	2	433	c.433G>A	c.(433-435)GAA>AAA	p.E145K		NM_001105565	NP_001099035	E9PPJ3	E9PPJ3_HUMAN	smoothelin-like 1	127										ovary(1)	1						AGAGGCTGAGGAAAAGGAGAG	0.512													4	6					0	0	1	0	0
UBE2L6	9246	broad.mit.edu	37	11	57322016	57322016	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:57322016G>A	uc001nkn.1	-	3	300	c.204C>T	c.(202-204)ATC>ATT	p.I68I	UBE2L6_uc001nko.1_Silent_p.I2I	NM_004223	NP_004214	O14933	UB2L6_HUMAN	ubiquitin-conjugating enzyme E2L 6 isoform 1	68					negative regulation of type I interferon production	cytosol	protein binding|ubiquitin-protein ligase activity			ovary(1)	1						TTGTGAATTTGATCATGGGAG	0.537													14	160					0	0	1	0	0
SERPING1	710	broad.mit.edu	37	11	57381808	57381808	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:57381808C>T	uc001nkp.1	+	8	1448	c.1257C>T	c.(1255-1257)TTC>TTT	p.F419F	SERPING1_uc001nkq.1_Silent_p.F382F|SERPING1_uc010rju.1_Silent_p.F367F|SERPING1_uc010rjv.1_Silent_p.F424F|SERPING1_uc001nkr.1_Silent_p.F419F|SERPING1_uc009ymi.1_Silent_p.F428F|SERPING1_uc009ymj.1_Missense_Mutation_p.S346L|SERPING1_uc001nks.1_Silent_p.F110F	NM_000062	NP_000053	P05155	IC1_HUMAN	serpin peptidase inhibitor, clade G, member 1	419					blood circulation|blood coagulation, intrinsic pathway|complement activation, classical pathway|innate immune response|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation	extracellular space|platelet alpha granule lumen	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)	1						TAGAATTCTTCGATTTTTCTT	0.483									Hereditary_Angioedema				20	104					0	0	1	0	0
SERPING1	710	broad.mit.edu	37	11	57381988	57381988	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:57381988C>T	uc001nkp.1	+	8	1628	c.1437C>T	c.(1435-1437)TTC>TTT	p.F479F	SERPING1_uc001nkq.1_Silent_p.F442F|SERPING1_uc010rju.1_Silent_p.F427F|SERPING1_uc010rjv.1_Silent_p.F484F|SERPING1_uc001nkr.1_Silent_p.F479F|SERPING1_uc009ymi.1_Silent_p.F488F|SERPING1_uc009ymj.1_3'UTR|SERPING1_uc001nks.1_Silent_p.F170F	NM_000062	NP_000053	P05155	IC1_HUMAN	serpin peptidase inhibitor, clade G, member 1	479					blood circulation|blood coagulation, intrinsic pathway|complement activation, classical pathway|innate immune response|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation	extracellular space|platelet alpha granule lumen	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)	1						CCTTCCTCTTCGTGCTCTGGG	0.617									Hereditary_Angioedema				8	41					0	0	1	0	0
OR9Q1	219956	broad.mit.edu	37	11	57947582	57947582	+	Silent	SNP	C	T	T	rs139135884	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:57947582C>T	uc001nmj.2	+	3	982	c.666C>T	c.(664-666)ATC>ATT	p.I222I		NM_001005212	NP_001005212	Q8NGQ5	OR9Q1_HUMAN	olfactory receptor, family 9, subfamily Q,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.222)				TGTTTATCATCGTGGCCATCA	0.512													8	30					0	0	1	0	0
OR1S1	219959	broad.mit.edu	37	11	57982297	57982297	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:57982297C>T	uc010rkc.1	+	1	81	c.81C>T	c.(79-81)CTC>CTT	p.L27L		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	27	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AATTCATTCTCCTGGGATTTT	0.418													4	26					0	0	1	0	0
OR10W1	81341	broad.mit.edu	37	11	58034437	58034437	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:58034437C>T	uc001nmq.1	-	1	1296	c.894G>A	c.(892-894)AGG>AGA	p.R298R		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				AAAGGCAGTTCCTGGTAAGAA	0.493													5	54					0	0	1	0	0
DTX4	23220	broad.mit.edu	37	11	58949774	58949774	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:58949774C>T	uc001nns.2	+	2	1031	c.774C>T	c.(772-774)ATC>ATT	p.I258I	DTX4_uc001nnr.2_Silent_p.I152I	NM_015177	NP_055992	Q9Y2E6	DTX4_HUMAN	deltex 4 homolog	258					Notch signaling pathway	cytoplasm	zinc ion binding			lung(2)|central_nervous_system(1)	3		all_epithelial(135;0.125)				CGCAGGTGATCCGGAGACAAG	0.652													3	27					0	0	1	0	0
MPEG1	219972	broad.mit.edu	37	11	58978763	58978764	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:58978763_58978764CC>AT	uc001nnu.3	-	1	1731_1732	c.1575_1576GG>AT	c.(1573-1578)GCGGTC>GCATTC	p.V526F		NM_001039396	NP_001034485	Q2M385	MPEG1_HUMAN	macrophage expressed gene 1 precursor	526	Extracellular (Potential).					integral to membrane				ovary(1)|skin(1)	2		all_epithelial(135;0.125)				CCAAAGGGGACCGCAAACCTGC	0.52													16	34					0	0	1	0	0
MPEG1	219972	broad.mit.edu	37	11	58978900	58978900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:58978900C>T	uc001nnu.3	-	1	1595	c.1439G>A	c.(1438-1440)GGG>GAG	p.G480E		NM_001039396	NP_001034485	Q2M385	MPEG1_HUMAN	macrophage expressed gene 1 precursor	480	Extracellular (Potential).					integral to membrane				ovary(1)|skin(1)	2		all_epithelial(135;0.125)				GAAGAGGCCCCCAAAAAGCAG	0.493													9	83					0	0	1	0	0
OR5A1	219982	broad.mit.edu	37	11	59211505	59211505	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:59211505G>A	uc001nnx.1	+	1	864	c.864G>A	c.(862-864)CTG>CTA	p.L288L		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						TCCCCATGCTGAACCCTCTCA	0.473													8	61					0	0	1	0	0
OR4D6	219983	broad.mit.edu	37	11	59224871	59224871	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:59224871G>A	uc010rku.1	+	1	438	c.438G>A	c.(436-438)GTG>GTA	p.V146V		NM_001004708	NP_001004708	Q8NGJ1	OR4D6_HUMAN	olfactory receptor, family 4, subfamily D,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCTTGGTGGTGGCTTCTTGGG	0.507													22	94					0	0	1	0	0
OR4D10	390197	broad.mit.edu	37	11	59245655	59245655	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:59245655C>T	uc001nnz.1	+	1	753	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CCCTGCATTTCGTGCCCTGCA	0.547													21	71					0	0	1	0	0
MS4A4A	51338	broad.mit.edu	37	11	60075592	60075592	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:60075592C>T	uc001noz.2	+	7	671	c.661C>T	c.(661-663)CTG>TTG	p.L221L	MS4A4A_uc001npa.2_Silent_p.L202L|MS4A4A_uc001npb.2_Silent_p.L202L|MS4A4A_uc001npc.2_Silent_p.L149L	NM_148975	NP_683876	Q96JQ5	M4A4A_HUMAN	membrane-spanning 4-domains, subfamily A, member	221	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						TGTGTTAATTCTGCCATCACA	0.438													5	64					0	0	1	0	0
MS4A6E	245802	broad.mit.edu	37	11	60105276	60105276	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:60105276C>T	uc001npd.2	+	2	224	c.210C>T	c.(208-210)CTC>CTT	p.L70L		NM_139249	NP_640342	Q96DS6	M4A6E_HUMAN	membrane-spanning 4-domains, subfamily A, member	70	Helical; (Potential).					integral to membrane	receptor activity				0						GTTTCATTCTCCTGTCTGTCA	0.463													6	69					0	0	1	0	0
MS4A12	54860	broad.mit.edu	37	11	60264994	60264994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:60264994G>A	uc001npr.2	+	2	260	c.203G>A	c.(202-204)GGA>GAA	p.G68E	MS4A12_uc009ynb.2_Missense_Mutation_p.G68E	NM_017716	NP_060186	Q9NXJ0	M4A12_HUMAN	membrane-spanning 4-domains, subfamily A, member	68	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						CCGGGTCAAGGAAATATACAA	0.433													7	29					0	0	1	0	0
CCDC86	79080	broad.mit.edu	37	11	60609702	60609702	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:60609702C>T	uc001nqa.2	+	1	274	c.105C>T	c.(103-105)TTC>TTT	p.F35F	CCDC86_uc001nqb.2_5'UTR	NM_024098	NP_077003	Q9H6F5	CCD86_HUMAN	coiled-coil domain containing 86	35					interspecies interaction between organisms	nucleus					0						TTGTGGAGTTCGAGTCGAACC	0.657													9	31					0	0	1	0	0
CCDC86	79080	broad.mit.edu	37	11	60615435	60615435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:60615435C>T	uc001nqa.2	+	2	966	c.797C>T	c.(796-798)TCG>TTG	p.S266L	CCDC86_uc001nqb.2_Missense_Mutation_p.S10L	NM_024098	NP_077003	Q9H6F5	CCD86_HUMAN	coiled-coil domain containing 86	266					interspecies interaction between organisms	nucleus					0						CTGCGCACATCGTGGCAGCGG	0.622													30	106					0	0	1	0	0
ZP1	22917	broad.mit.edu	37	11	60637241	60637241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:60637241G>A	uc001nqd.2	+	3	570	c.550G>A	c.(550-552)GAC>AAC	p.D184N	ZP1_uc001nqe.2_5'Flank	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	184	Extracellular (Potential).				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						CAGCCCACTGGACCCAGGGCA	0.627													4	25					0	0	1	0	0
TMEM132A	54972	broad.mit.edu	37	11	60699339	60699339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:60699339C>T	uc001nqj.2	+	6	1388	c.1195C>T	c.(1195-1197)CTT>TTT	p.L399F	TMEM132A_uc001nqi.2_Missense_Mutation_p.L400F|TMEM132A_uc001nqk.2_Missense_Mutation_p.L412F|TMEM132A_uc001nql.1_Missense_Mutation_p.L412F|TMEM132A_uc001nqm.2_5'Flank	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	399	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						CATCAGAGCCCTTATCCCACT	0.627													11	78					0	0	1	0	0
TMEM132A	54972	broad.mit.edu	37	11	60702167	60702167	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:60702167C>T	uc001nqj.2	+	9	1960	c.1767C>T	c.(1765-1767)GAC>GAT	p.D589D	TMEM132A_uc001nqi.2_Silent_p.D590D|TMEM132A_uc001nqm.2_5'UTR	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	589	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						GCGTGCTGGACTCGCGTGTAG	0.706													4	33					0	0	1	0	0
CD6	923	broad.mit.edu	37	11	60777154	60777154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:60777154G>A	uc001nqq.2	+	5	1115	c.892G>A	c.(892-894)GAG>AAG	p.E298K	CD6_uc009yni.2_Intron|CD6_uc009ynj.2_Intron|CD6_uc001nqp.2_Missense_Mutation_p.E298K|CD6_uc001nqr.2_Missense_Mutation_p.E298K|CD6_uc001nqs.2_RNA|CD6_uc001nqt.2_Missense_Mutation_p.E298K	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	298	SRCR 3.|Extracellular (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						GTACCCATCGGAGGCCAAGGT	0.632													4	51					0	0	1	0	0
CD6	923	broad.mit.edu	37	11	60777262	60777262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:60777262G>A	uc001nqq.2	+	5	1223	c.1000G>A	c.(1000-1002)GAG>AAG	p.E334K	CD6_uc009yni.2_Intron|CD6_uc009ynj.2_Intron|CD6_uc001nqp.2_Missense_Mutation_p.E334K|CD6_uc001nqr.2_Missense_Mutation_p.E334K|CD6_uc001nqs.2_RNA|CD6_uc001nqt.2_Missense_Mutation_p.E334K	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	334	SRCR 3.|Extracellular (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						CAATGGGGAGGAGCTCACCCT	0.617													8	39					0	0	1	0	0
CD5	921	broad.mit.edu	37	11	60885712	60885712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:60885712G>A	uc009ynk.2	+	3	263	c.160G>A	c.(160-162)GAC>AAC	p.D54N		NM_014207	NP_055022	P06127	CD5_HUMAN	CD5 molecule precursor	54	Extracellular (Potential).|SRCR 1.				cell proliferation|cell recognition	integral to plasma membrane	scavenger receptor activity			ovary(1)	1		all_lung(304;5.94e-05)|Lung NSC(402;7.26e-05)		BRCA - Breast invasive adenocarcinoma(625;0.000946)|Lung(977;0.0086)|LUSC - Lung squamous cell carcinoma(625;0.0528)		CTACCTCAAGGACGGATGGCA	0.617													9	128					0	0	1	0	0
PGA5	5222	broad.mit.edu	37	11	61018652	61018652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:61018652G>A	uc001nqz.2	+	9	1096	c.1066G>A	c.(1066-1068)GAA>AAA	p.E356K		NM_014224	NP_055039	P00790	PEPA_HUMAN	pepsinogen 5, group I precursor	356					digestion|proteolysis	extracellular region	aspartic-type endopeptidase activity			skin(1)	1						CGTCCCCACCGAATCTGGAGA	0.557													15	175					0	0	1	0	0
C11orf66	220004	broad.mit.edu	37	11	61250266	61250266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:61250266C>T	uc001nru.1	+	4	492	c.367C>T	c.(367-369)CCC>TCC	p.P123S	C11orf66_uc009ynq.1_Missense_Mutation_p.P123S	NM_145017	NP_659454	Q7Z5V6	CK066_HUMAN	IIIG9 protein	123										ovary(1)	1						CAGTGCGGGTCCCCCCACCAA	0.682											OREG0021002	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	11					0	0	1	0	0
RPLP0P2	113157	broad.mit.edu	37	11	61404484	61404485	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:61404484_61404485CC>TT	uc001nrz.1	+	5	1088_1089	c.333_334CC>TT	c.(331-336)ACCCGT>ACTTGT	p.R112C		NR_002775				SubName: Full=cDNA FLJ51469, highly similar to 60S acidic ribosomal protein P0;												0						CAGCTGCCACCCGTGCTGGTGC	0.559													3	17					0	0	1	0	0
RAB3IL1	5866	broad.mit.edu	37	11	61672311	61672311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:61672311G>A	uc001nso.2	-	6	859	c.701C>T	c.(700-702)TCC>TTC	p.S234F	RAB3IL1_uc001nsp.2_Missense_Mutation_p.S208F	NM_013401	NP_037533	Q8TBN0	R3GEF_HUMAN	RAB3A interacting protein (rabin3)-like 1	234							protein binding			skin(2)|central_nervous_system(1)	3						CAGGGTGGGGGATTCCCTCCA	0.632													9	70					0	0	1	0	0
INCENP	3619	broad.mit.edu	37	11	61897294	61897294	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:61897294C>A	uc001nsw.1	+	4	497	c.295C>A	c.(295-297)CGA>AGA	p.R99R	INCENP_uc009ynv.2_Silent_p.R99R|INCENP_uc009ynw.1_Silent_p.R99R|INCENP_uc001nsx.1_Silent_p.R99R	NM_001040694	NP_001035784	Q9NQS7	INCE_HUMAN	inner centromere protein antigens 135/155kDa	99					chromosome segregation|cytokinesis|mitotic prometaphase	centromeric heterochromatin|condensed chromosome kinetochore|cytosol|microtubule|spindle	protein binding			lung(1)	1						GCTGAGCTCCCGACGCCTCCG	0.667													9	26					3.86212e-05	3.90582e-05	1	1	0
INCENP	3619	broad.mit.edu	37	11	61906362	61906362	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:61906362C>T	uc001nsw.1	+	7	1378	c.1176C>T	c.(1174-1176)GTC>GTT	p.V392V	INCENP_uc009ynw.1_Silent_p.V392V|INCENP_uc001nsx.1_Silent_p.V392V	NM_001040694	NP_001035784	Q9NQS7	INCE_HUMAN	inner centromere protein antigens 135/155kDa	392					chromosome segregation|cytokinesis|mitotic prometaphase	centromeric heterochromatin|condensed chromosome kinetochore|cytosol|microtubule|spindle	protein binding			lung(1)	1						TTCCACAGGTCCCTGAGAACA	0.587													9	107					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62288269	62288269	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:62288269G>A	uc001ntl.2	-	5	13920	c.13620C>T	c.(13618-13620)TCC>TCT	p.S4540S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4540					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GTTTAGGAACGGAAATGTCCA	0.413													4	47					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62295955	62295955	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:62295955C>T	uc001ntl.2	-	5	6234	c.5934G>A	c.(5932-5934)AAG>AAA	p.K1978K	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1978					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TCTCAGGCATCTTAAACTTGG	0.502													18	205					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62300355	62300355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:62300355G>A	uc001ntl.2	-	5	1834	c.1534C>T	c.(1534-1536)CCT>TCT	p.P512S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	512					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TTCAGTTTAGGAGACCCAAGG	0.448													5	114					0	0	1	0	0
AHNAK	79026	broad.mit.edu	37	11	62300404	62300404	+	Silent	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:62300404A>T	uc001ntl.2	-	5	1785	c.1485T>A	c.(1483-1485)ATT>ATA	p.I495I	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	495					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TAGGTTTCTGAATAATCATTT	0.473													17	109					0	0	1	0	0
EML3	256364	broad.mit.edu	37	11	62373637	62373637	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:62373637G>A	uc001ntu.1	-	13	1862	c.1554C>T	c.(1552-1554)TTC>TTT	p.F518F	EML3_uc001ntr.1_Silent_p.F490F|EML3_uc001nts.1_Silent_p.F490F|EML3_uc001ntt.1_Silent_p.F402F|EML3_uc010rly.1_Silent_p.F518F|EML3_uc009yny.1_Silent_p.F301F	NM_153265	NP_694997	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like	518	WD 5.					cytoplasm|microtubule	protein binding			ovary(1)	1						GACACAAGGCGAAGATAGAAC	0.637													5	47					0	0	1	0	0
EML3	256364	broad.mit.edu	37	11	62376927	62376927	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:62376927G>A	uc001ntu.1	-	6	965	c.657C>T	c.(655-657)TTC>TTT	p.F219F	EML3_uc001ntr.1_Silent_p.F191F|EML3_uc001nts.1_Silent_p.F191F|EML3_uc001ntt.1_Silent_p.F103F|EML3_uc010rly.1_Silent_p.F219F|EML3_uc009yny.1_Silent_p.F2F	NM_153265	NP_694997	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like	219						cytoplasm|microtubule	protein binding			ovary(1)	1						GCCCTCGAAGGAACATCTTCA	0.582													23	101					0	0	1	0	0
BSCL2	26580	broad.mit.edu	37	11	62458830	62458830	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:62458830G>A	uc001nuo.1	-	7	1159	c.735C>T	c.(733-735)TTC>TTT	p.F245F	LRRN4CL_uc001nun.2_5'Flank|BSCL2_uc009yoc.1_Intron|BSCL2_uc001nup.2_Silent_p.F245F|BSCL2_uc001nuq.1_Silent_p.F245F|BSCL2_uc001nur.3_Silent_p.F309F|BSCL2_uc009yod.2_Silent_p.F309F|BSCL2_uc001nut.3_Silent_p.F309F|HNRNPUL2_uc001nuu.1_RNA	NM_032667	NP_116056	Q96G97	BSCL2_HUMAN	seipin isoform 2	245	Helical; (Potential).				cell death	integral to endoplasmic reticulum membrane					0						TGACGCTGAGGAAGGTGAAGT	0.567													29	388					0	0	1	0	0
CHRM1	1128	broad.mit.edu	37	11	62677792	62677792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:62677792G>A	uc001nwi.2	-	2	1182	c.781C>T	c.(781-783)CGC>TGC	p.R261C		NM_000738	NP_000729	P11229	ACM1_HUMAN	cholinergic receptor, muscarinic 1	261	Cytoplasmic (Potential).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell proliferation|nervous system development|positive regulation of cell proliferation|protein modification process	cell junction|integral to plasma membrane|membrane fraction|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity|protein binding				0					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Benztropine(DB00245)|Bethanechol(DB01019)|Biperiden(DB00810)|Buclizine(DB00354)|Carbachol(DB00411)|Carbinoxamine(DB00748)|Cevimeline(DB00185)|Clidinium(DB00771)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Cyclopentolate(DB00979)|Cycrimine(DB00942)|Desipramine(DB01151)|Dicyclomine(DB00804)|Diphenidol(DB01231)|Doxylamine(DB00366)|Ethopropazine(DB00392)|Flavoxate(DB01148)|Glycopyrrolate(DB00986)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methantheline(DB00940)|Methotrimeprazine(DB01403)|Methylscopolamine(DB00462)|Metixene(DB00340)|Metoclopramide(DB01233)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Oxyphenonium(DB00219)|Pilocarpine(DB01085)|Pirenzepine(DB00670)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propantheline(DB00782)|Propiomazine(DB00777)|Quinacrine(DB01103)|Scopolamine(DB00747)|Solifenacin(DB01591)|Succinylcholine(DB00202)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)|Trihexyphenidyl(DB00376)|Trospium(DB00209)	CGGCAGCAGCGACAGCAGCGG	0.652													12	109					0	0	1	0	0
SLC22A8	9376	broad.mit.edu	37	11	62760937	62760937	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:62760937C>T	uc001nwo.2	-	10	1624	c.1488G>A	c.(1486-1488)CTG>CTA	p.L496L	SLC22A8_uc001nwn.1_3'UTR|SLC22A8_uc001nwp.2_Silent_p.L496L|SLC22A8_uc009yom.2_Silent_p.L373L|SLC22A8_uc010rmm.1_Silent_p.L405L|SLC22A8_uc009yon.2_Silent_p.L496L	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	496	Extracellular (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						AGGGCTGATTCAGGGTCTCAG	0.592													17	88					0	0	1	0	0
SLC22A8	9376	broad.mit.edu	37	11	62761058	62761058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:62761058C>T	uc001nwo.2	-	10	1503	c.1367G>A	c.(1366-1368)GGA>GAA	p.G456E	SLC22A8_uc001nwn.1_3'UTR|SLC22A8_uc001nwp.2_Missense_Mutation_p.G456E|SLC22A8_uc009yom.2_Missense_Mutation_p.G333E|SLC22A8_uc010rmm.1_Missense_Mutation_p.G365E|SLC22A8_uc009yon.2_Missense_Mutation_p.G456E	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	456	Cytoplasmic (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						CACCATGCTTCCCACGCGGGT	0.582													15	41					0	0	1	0	0
SLC22A10	387775	broad.mit.edu	37	11	63069894	63069894	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:63069894C>T	uc009yor.2	+	7	1372	c.1164C>T	c.(1162-1164)GTC>GTT	p.V388V	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_Intron|SLC22A10_uc010rmp.1_Intron	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	388	Helical; (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						ATGGAGCTGTCGCTCTCATAG	0.433													4	13					0	0	1	0	0
LGALS12	85329	broad.mit.edu	37	11	63276098	63276098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:63276098C>T	uc001nxa.2	+	2	550	c.209C>T	c.(208-210)CCT>CTT	p.P70L	LGALS12_uc001nxb.2_Missense_Mutation_p.P70L|LGALS12_uc001nxc.2_Missense_Mutation_p.P70L|LGALS12_uc001nxd.2_Missense_Mutation_p.P9L|LGALS12_uc001nxe.2_Missense_Mutation_p.P9L|LGALS12_uc009yot.2_Silent_p.P32P	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	70	Galectin 1.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						GGAGTGGTCCCTCTAGATGCA	0.572													4	58					0	0	1	0	0
LGALS12	85329	broad.mit.edu	37	11	63276445	63276445	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:63276445C>T	uc001nxa.2	+	3	761	c.420C>T	c.(418-420)TTC>TTT	p.F140F	LGALS12_uc001nxb.2_Silent_p.F140F|LGALS12_uc001nxc.2_Silent_p.F141F|LGALS12_uc001nxd.2_Silent_p.F79F|LGALS12_uc001nxe.2_Silent_p.F79F|LGALS12_uc009yot.2_Silent_p.F100F	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	140	Galectin 1.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						TCTTTCTCTTCGGGAATGAGG	0.597													8	25					0	0	1	0	0
HRASLS2	54979	broad.mit.edu	37	11	63327659	63327659	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:63327659G>A	uc001nxg.1	-	2	75	c.16C>T	c.(16-18)CCA>TCA	p.P6S		NM_017878	NP_060348	Q9NWW9	HRSL2_HUMAN	HRAS-like suppressor 2	6					lipid catabolic process	cytoplasm	acyltransferase activity|hydrolase activity				0						CTCGGTCTTGGTCTGGCCTGC	0.557													9	113					0	0	1	0	0
RCOR2	283248	broad.mit.edu	37	11	63679817	63679817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:63679817C>T	uc001nyc.2	-	11	1605	c.1217G>A	c.(1216-1218)GGG>GAG	p.G406E		NM_173587	NP_775858	Q8IZ40	RCOR2_HUMAN	REST corepressor 2	406					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)|skin(1)	2						CAATGGAGCCCCTCTCCTAGC	0.557													9	100					0	0	1	0	0
COX8A	1351	broad.mit.edu	37	11	63743713	63743713	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:63743713T>C	uc001nye.2	+	2	205	c.131T>C	c.(130-132)CTT>CCT	p.L44P		NM_004074	NP_004065	P10176	COX8A_HUMAN	cytochrome c oxidase subunit VIIIa precursor	44	Helical; (By similarity).				respiratory electron transport chain	integral to membrane|mitochondrial inner membrane	cytochrome-c oxidase activity				0						GCCGTTGGGCTTACCTCCTGC	0.572													22	177					0	0	1	0	0
FLRT1	23769	broad.mit.edu	37	11	63883944	63883944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:63883944G>A	uc001nyi.1	+	2	546	c.205G>A	c.(205-207)GAC>AAC	p.D69N	MACROD1_uc001nyh.2_Intron	NM_013280	NP_037412	Q9NZU1	FLRT1_HUMAN	fibronectin leucine rich transmembrane protein	41	Extracellular (Potential).|LRRNT.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity				0						CTACTGCAACGACCGGGGACT	0.607													7	32					0	0	1	0	0
FLRT1	23769	broad.mit.edu	37	11	63885561	63885561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:63885561G>A	uc001nyi.1	+	2	2163	c.1822G>A	c.(1822-1824)GAT>AAT	p.D608N	MACROD1_uc001nyh.2_Intron	NM_013280	NP_037412	Q9NZU1	FLRT1_HUMAN	fibronectin leucine rich transmembrane protein	580	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity				0						GACCAAGAAGGATAACTCCAT	0.592													5	60					0	0	1	0	0
FERMT3	83706	broad.mit.edu	37	11	63979141	63979141	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:63979141C>T	uc001nyl.2	+	6	857	c.708C>T	c.(706-708)CTC>CTT	p.L236L	FERMT3_uc001nym.2_Silent_p.L236L	NM_178443	NP_848537	Q86UX7	URP2_HUMAN	fermitin family homolog 3 long form	236	FERM.				integrin activation|leukocyte cell-cell adhesion|platelet aggregation|regulation of cell-cell adhesion mediated by integrin	cell junction|cell projection|podosome	integrin binding			ovary(1)	1						CGCGGTGTCTCATGCAGCAGG	0.672													14	71					0	0	1	0	0
GPR137	56834	broad.mit.edu	37	11	64056797	64056797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:64056797C>T	uc001nzg.1	+	8	1522	c.1214C>T	c.(1213-1215)CCT>CTT	p.P405L	GPR137_uc010rni.1_Missense_Mutation_p.P463L|GPR137_uc001nzf.2_3'UTR|GPR137_uc001nzi.2_3'UTR|GPR137_uc010rnj.1_3'UTR|KCNK4_uc009ypl.1_5'Flank|KCNK4_uc001nzj.1_5'Flank|KCNK4_uc001nzk.1_5'Flank|KCNK4_uc010rnk.1_5'Flank|KCNK4_uc001nzl.1_5'Flank|KCNK4_uc001nzm.3_5'Flank|KCNK4_uc001nzn.1_5'Flank	NM_020155	NP_064540	Q96N19	G137A_HUMAN	G protein-coupled receptor 137	405	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(1)	1						TGGCCGGCTCCTTGCTGCTCC	0.667													32	135					0	0	1	0	0
CCDC88B	283234	broad.mit.edu	37	11	64108130	64108130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:64108130G>A	uc001nzy.2	+	2	156	c.112G>A	c.(112-114)GAA>AAA	p.E38K	CCDC88B_uc009ypo.1_Missense_Mutation_p.E38K|CCDC88B_uc001nzz.1_5'Flank	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	38	Poly-Glu.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						ggagggggaagaagaggaaga	0.507													6	71					0	0	1	0	0
RPS6KA4	8986	broad.mit.edu	37	11	64138787	64138787	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:64138787C>T	uc001oae.2	+	17	2237	c.2154C>T	c.(2152-2154)TTC>TTT	p.F718F	RPS6KA4_uc001oad.2_Silent_p.F712F|RPS6KA4_uc010rnl.1_Silent_p.F655F|RPS6KA4_uc001oaf.2_Silent_p.F711F|RPS6KA4_uc009ypp.2_Silent_p.F470F	NM_003942	NP_003933	O75676	KS6A4_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	718					axon guidance|histone phosphorylation|interleukin-1-mediated signaling pathway|intracellular protein kinase cascade|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|magnesium ion binding|mitogen-activated protein kinase p38 binding|ribosomal protein S6 kinase activity			lung(3)|ovary(1)|breast(1)	5						AGGGCTTCTTCCTGAAGAGCG	0.672													10	156					0	0	1	0	0
NRXN2	9379	broad.mit.edu	37	11	64428293	64428293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:64428293C>T	uc001oar.2	-	11	2556	c.2117G>A	c.(2116-2118)CGA>CAA	p.R706Q	NRXN2_uc001oas.2_Missense_Mutation_p.R675Q|NRXN2_uc001oaq.2_Missense_Mutation_p.R373Q	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:Variant_position_missing_in_P58401_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CCAGCCTTCTCGACAGACGCC	0.632													6	52					0	0	1	0	0
PYGM	5837	broad.mit.edu	37	11	64518906	64518906	+	Silent	SNP	G	A	A	rs148177970		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:64518906G>A	uc001oax.3	-	16	2677	c.1860C>T	c.(1858-1860)ATC>ATT	p.I620I	PYGM_uc001oay.3_Silent_p.I532I	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	620					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	CGAGTCTGATGATCATCTTGG	0.602													13	66					0	0	1	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64594866	64594866	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:64594866C>A	uc001obs.3	-	33	4155	c.4155G>T	c.(4153-4155)AAG>AAT	p.K1385N		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	1385					actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						CGAACTCGTCCTTCTCTGTGG	0.637													17	113					1.96292e-10	1.99178e-10	1	1	0
CDC42BPG	55561	broad.mit.edu	37	11	64604419	64604419	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:64604419C>T	uc001obs.3	-	10	1278	c.1278G>A	c.(1276-1278)AAG>AAA	p.K426K		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	426	Potential.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						TCAGCTCCACCTTCTCCTGCT	0.642													8	72					0	0	1	0	0
EHD1	10938	broad.mit.edu	37	11	64622144	64622144	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:64622144G>A	uc001obu.1	-	5	1521	c.1266C>T	c.(1264-1266)TTC>TTT	p.F422F	EHD1_uc001obt.1_Silent_p.F105F|EHD1_uc001obv.1_Silent_p.F422F|EHD1_uc010rnq.1_Silent_p.F436F	NM_006795	NP_006786	Q9H4M9	EHD1_HUMAN	EH-domain containing 1	422					blood coagulation|cholesterol homeostasis|endocytic recycling|intracellular protein transport|low-density lipoprotein particle clearance|positive regulation of cholesterol storage|protein homooligomerization	early endosome membrane|lipid particle|plasma membrane|platelet dense tubular network membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|protein binding				0						AGCCGTGCCCGAACGGCCCGT	0.662													9	133					0	0	1	0	0
ATG2A	23130	broad.mit.edu	37	11	64678345	64678345	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:64678345G>A	uc001obx.2	-	11	1663	c.1548C>T	c.(1546-1548)CAC>CAT	p.H516H		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	516							protein binding			ovary(1)|central_nervous_system(1)	2						GCTGCCCGAAGTGCACTTCCA	0.677													4	12					0	0	1	0	0
ATG2A	23130	broad.mit.edu	37	11	64678708	64678708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:64678708G>A	uc001obx.2	-	10	1383	c.1268C>T	c.(1267-1269)CCT>CTT	p.P423L		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	423							protein binding			ovary(1)|central_nervous_system(1)	2						CAGCGAGTCAGGGCGCATGGT	0.627													11	83					0	0	1	0	0
SNX15	29907	broad.mit.edu	37	11	64799642	64799642	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:64799642C>T	uc001oci.3	+	5	755	c.102C>T	c.(100-102)TTC>TTT	p.F34F	SNX15_uc009ypy.2_Silent_p.F34F|SNX15_uc001ocj.2_Silent_p.F34F|SNX15_uc001ock.2_Silent_p.F34F	NM_013306	NP_037438	Q9NRS6	SNX15_HUMAN	sorting nexin 15 isoform A	34	PX.				cell communication|intracellular protein transport	cytoplasmic vesicle membrane|cytosol	phosphatidylinositol binding|protein transporter activity			ovary(1)	1						TTTCTCAGTTCATCTCAAAGA	0.552													4	74					0	0	1	0	0
CDCA5	113130	broad.mit.edu	37	11	64846961	64846961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:64846961G>A	uc001ocp.2	-	5	707	c.542C>T	c.(541-543)TCG>TTG	p.S181L		NM_080668	NP_542399	Q96FF9	CDCA5_HUMAN	cell division cycle associated 5	181					cell division|double-strand break repair|G1/S transition of mitotic cell cycle|mitotic chromosome condensation|mitotic metaphase plate congression|mitotic sister chromatid cohesion|regulation of cohesin localization to chromatin	cytoplasm|nuclear chromatin|plasma membrane	chromatin binding|identical protein binding				0						CACCACTGGCGAGACTCCGGA	0.647													4	48					0	0	1	0	0
C11orf2	738	broad.mit.edu	37	11	64878954	64878954	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:64878954C>T	uc001ocr.1	+	10	2284	c.2244C>T	c.(2242-2244)CTC>CTT	p.L748L	TM7SF2_uc001oct.2_5'Flank|TM7SF2_uc010rny.1_5'Flank|TM7SF2_uc001ocu.2_5'Flank|TM7SF2_uc001ocv.2_5'Flank|C11orf2_uc001ocs.1_Silent_p.L624L	NM_013265	NP_037397	Q9UID3	FFR_HUMAN	chromosome 11 open reading frame 2	748					lipid transport|protein transport	Golgi apparatus|integral to membrane					0						ACGAAGAACTCGTGCACTTGC	0.637													4	46					0	0	1	0	0
SPDYC	387778	broad.mit.edu	37	11	64940017	64940017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:64940017G>A	uc010rnz.1	+	5	457	c.457G>A	c.(457-459)GAT>AAT	p.D153N		NM_001008778	NP_001008778	Q5MJ68	SPDYC_HUMAN	speedy C	153	Speedy/Ringo box; Required for CDK- binding (By similarity).				cell cycle	nucleus	protein kinase binding				0						GCACCAGAGGGATAAGCTTTG	0.592													6	79					0	0	1	0	0
POLA2	23649	broad.mit.edu	37	11	65061632	65061632	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65061632C>T	uc001odj.2	+	14	1595	c.1253C>T	c.(1252-1254)TCC>TTC	p.S418F	POLA2_uc010rod.1_Missense_Mutation_p.S210F|POLA2_uc001odk.2_Missense_Mutation_p.S115F	NM_002689	NP_002680	Q14181	DPOA2_HUMAN	DNA-directed DNA polymerase alpha 2	418					DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	nucleoplasm	DNA binding				0					Dacarbazine(DB00851)	AGCTCCGGCTCCCACCTTGTC	0.522													32	446					0	0	1	0	0
DPF2	5977	broad.mit.edu	37	11	65119203	65119203	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65119203C>T	uc001odm.2	+	11	1161	c.1149C>T	c.(1147-1149)TCC>TCT	p.S383S	DPF2_uc001odn.2_Silent_p.S397S|DPF2_uc010roe.1_Silent_p.S199S	NM_006268	NP_006259	Q92785	REQU_HUMAN	D4, zinc and double PHD fingers family 2	383					apoptosis|induction of apoptosis by extracellular signals|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						AGAAAGCTTCCATCTACCAGA	0.517													11	89					0	0	1	0	0
TIGD3	220359	broad.mit.edu	37	11	65124131	65124131	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65124131C>T	uc001odo.3	+	2	1015	c.852C>T	c.(850-852)CTC>CTT	p.L284L		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	284	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						ACGTGAAGCTCTTGCCTCTGG	0.662													7	70					0	0	1	0	0
TIGD3	220359	broad.mit.edu	37	11	65124657	65124657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65124657G>A	uc001odo.3	+	2	1541	c.1378G>A	c.(1378-1380)GAC>AAC	p.D460N		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	460					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						AAAATTCTACGACTGTGAGGA	0.572													7	32					0	0	1	0	0
SLC25A45	283130	broad.mit.edu	37	11	65144347	65144347	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65144347G>A	uc001odp.1	-	5	962	c.540C>T	c.(538-540)ATC>ATT	p.I180I	SLC25A45_uc009yqi.1_Silent_p.I118I|SLC25A45_uc001odq.1_Silent_p.I156I|SLC25A45_uc001odr.1_Silent_p.I180I|SLC25A45_uc001ods.1_Silent_p.I138I|SLC25A45_uc001odt.1_Silent_p.I138I	NM_001077241	NP_001070709	Q8N413	S2545_HUMAN	solute carrier family 25, member 45 isoform b	180	Solcar 2.|Helical; Name=4; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						TGATGAAGTAGATCCCCACCG	0.632													14	141					0	0	1	0	0
EHBP1L1	254102	broad.mit.edu	37	11	65358037	65358037	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65358037C>T	uc001oeo.3	+	16	4522	c.4257C>T	c.(4255-4257)ATC>ATT	p.I1419I		NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	1419	Potential.									central_nervous_system(1)	1						ACGCTCTCATCCGGAGGCAGG	0.567													6	36					0	0	1	0	0
PCNXL3	399909	broad.mit.edu	37	11	65385973	65385973	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65385973C>T	uc001oey.2	+	6	1140	c.1140C>T	c.(1138-1140)GTC>GTT	p.V380V		NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	380						integral to membrane					0						CGCTCCTGGTCGTGCGGCCCA	0.682													5	14					0	0	1	0	0
PCNXL3	399909	broad.mit.edu	37	11	65396321	65396321	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65396321C>T	uc001oey.2	+	24	3843	c.3843C>T	c.(3841-3843)CTC>CTT	p.L1281L	PCNXL3_uc001oez.2_Silent_p.L168L	NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	1281	Helical; (Potential).					integral to membrane					0						AGGCCCTGCTCTCGGGGCTCT	0.652													4	35					0	0	1	0	0
PCNXL3	399909	broad.mit.edu	37	11	65402493	65402493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65402493C>T	uc001oey.2	+	30	4855	c.4855C>T	c.(4855-4857)CGC>TGC	p.R1619C	PCNXL3_uc001oez.2_Missense_Mutation_p.R506C	NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	1619						integral to membrane					0						GGGGGATTTTCGCATCACCTC	0.622													10	27					0	0	1	0	0
OVOL1	5017	broad.mit.edu	37	11	65561597	65561597	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65561597C>T	uc001ofp.2	+	2	512	c.196C>T	c.(196-198)CGA>TGA	p.R66*	OVOL1_uc001ofq.2_Nonsense_Mutation_p.R4*	NM_004561	NP_004552	O14753	OVOL1_HUMAN	OVO-like 1 binding protein	66					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				READ - Rectum adenocarcinoma(159;0.17)		CATGAGCCTTCGAGACTCTAG	0.652													19	124					0	0	1	0	0
OVOL1	5017	broad.mit.edu	37	11	65562600	65562600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65562600G>A	uc001ofp.2	+	4	908	c.592G>A	c.(592-594)GGT>AGT	p.G198S	OVOL1_uc001ofq.2_Missense_Mutation_p.G136S	NM_004561	NP_004552	O14753	OVOL1_HUMAN	OVO-like 1 binding protein	198					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				READ - Rectum adenocarcinoma(159;0.17)		GAAGATCCATGGTGTGCAGCA	0.622													6	41					0	0	1	0	0
EFEMP2	30008	broad.mit.edu	37	11	65638023	65638023	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65638023G>A	uc001ofy.3	-	5	668	c.474C>T	c.(472-474)ATC>ATT	p.I158I	EFEMP2_uc001ofz.2_RNA|EFEMP2_uc001oga.2_Silent_p.I158I	NM_016938	NP_058634	O95967	FBLN4_HUMAN	EGF-containing fibulin-like extracellular matrix	158	EGF-like 2; calcium-binding (Potential).				blood coagulation	basement membrane|membrane	calcium ion binding|extracellular matrix structural constituent|protein binding|transmembrane receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(159;0.169)		ACTCGGGCCCGATCTTGCGGT	0.622													3	15					0	0	1	0	0
EFEMP2	30008	broad.mit.edu	37	11	65638727	65638727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65638727C>T	uc001ofy.3	-	4	462	c.268G>A	c.(268-270)GAC>AAC	p.D90N	EFEMP2_uc001ofz.2_RNA|EFEMP2_uc001oga.2_Missense_Mutation_p.D90N	NM_016938	NP_058634	O95967	FBLN4_HUMAN	EGF-containing fibulin-like extracellular matrix	90					blood coagulation	basement membrane|membrane	calcium ion binding|extracellular matrix structural constituent|protein binding|transmembrane receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(159;0.169)		CCGTGTAGGTCGTTGATGACG	0.647													8	162					0	0	1	0	0
CTSW	1521	broad.mit.edu	37	11	65649946	65649946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65649946G>A	uc001ogc.1	+	5	529	c.487G>A	c.(487-489)GAG>AAG	p.E163K	CTSW_uc001ogb.1_Missense_Mutation_p.E163K	NM_001335	NP_001326	P56202	CATW_HUMAN	cathepsin W preproprotein	163					immune response|proteolysis		cysteine-type endopeptidase activity			central_nervous_system(1)	1				READ - Rectum adenocarcinoma(159;0.168)		AGGCAACATAGAGACCCTGTG	0.642													5	78					0	0	1	0	0
TSGA10IP	254187	broad.mit.edu	37	11	65726390	65726390	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65726390G>A	uc001ogk.1	+	8	1391	c.1359G>A	c.(1357-1359)GCG>GCA	p.A453A	TSGA10IP_uc009yqw.1_RNA|TSGA10IP_uc009yqx.1_RNA|SART1_uc009yqy.1_5'Flank|SART1_uc010rot.1_5'Flank|SART1_uc001ogl.2_5'Flank	NM_152762	NP_689975	Q3SY00	T10IP_HUMAN	testis specific, 10 interacting protein	453	Potential.										0						AGTACCAGGCGGAGCTGCAAG	0.622													7	60					0	0	1	0	0
CST6	1474	broad.mit.edu	37	11	65780393	65780393	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65780393T>C	uc001ogr.2	+	2	391	c.337T>C	c.(337-339)TGC>CGC	p.C113R	CST6_uc001ogs.1_Missense_Mutation_p.C23R	NM_001323	NP_001314	Q15828	CYTM_HUMAN	cystatin M precursor	113					anatomical structure morphogenesis	extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1						CCTCACCACTTGCCCCCTGGC	0.642													4	40					0	0	1	0	0
SF3B2	10992	broad.mit.edu	37	11	65826745	65826745	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65826745C>T	uc001ogy.1	+	11	1296	c.1256C>T	c.(1255-1257)CCC>CTC	p.P419L		NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	419					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						TCTGCAGCCCCCAAGAAGAAG	0.532													5	27					0	0	1	0	0
PACS1	55690	broad.mit.edu	37	11	65978611	65978611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65978611C>T	uc001oha.1	+	4	675	c.541C>T	c.(541-543)CAT>TAT	p.H181Y	PACS1_uc001ogz.1_Missense_Mutation_p.H181Y	NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	181				Missing (in Ref. 2; BAC04831).	interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						GTAGTACCCTCATTTCCTTAA	0.488													19	186					0	0	1	0	0
PACS1	55690	broad.mit.edu	37	11	65988626	65988626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:65988626C>T	uc001oha.1	+	10	1335	c.1201C>T	c.(1201-1203)CCT>TCT	p.P401S		NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	401					interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						TCACCACAGGCCTTTCTTTGA	0.587													25	87					0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66190147	66190147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:66190147C>T	uc001ohx.1	+	4	609	c.433C>T	c.(433-435)CGC>TGC	p.R145C	NPAS4_uc010rpc.1_5'UTR	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	145					transcription, DNA-dependent		DNA binding|signal transducer activity				0						CTATCTAGATCGCCTCTTCCG	0.552													5	31					0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66190250	66190250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:66190250G>A	uc001ohx.1	+	4	712	c.536G>A	c.(535-537)GGA>GAA	p.G179E	NPAS4_uc010rpc.1_Missense_Mutation_p.E6K	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	179					transcription, DNA-dependent		DNA binding|signal transducer activity				0						CACCCACCTGGAGCCTACTGG	0.637													4	80					0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66191868	66191869	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:66191868_66191869CC>TT	uc001ohx.1	+	7	1683_1684	c.1507_1508CC>TT	c.(1507-1509)CCC>TTC	p.P503F	NPAS4_uc010rpc.1_Missense_Mutation_p.P293F	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	503					transcription, DNA-dependent		DNA binding|signal transducer activity				0						CCAGTTGACTCCCTGCACCTCC	0.589													32	190					0	0	1	0	0
DPP3	10072	broad.mit.edu	37	11	66260357	66260357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:66260357C>T	uc001oig.1	+	10	1221	c.1159C>T	c.(1159-1161)CCT>TCT	p.P387S	DPP3_uc001oif.1_Missense_Mutation_p.P387S|DPP3_uc010rpe.1_Missense_Mutation_p.P376S	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	387					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						CTCCGGCATCCCTGCCGGCAT	0.612													4	105					0	0	1	0	0
ACTN3	89	broad.mit.edu	37	11	66330650	66330650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:66330650G>A	uc001oio.1	+	22	2710	c.2692G>A	c.(2692-2694)GAG>AAG	p.E898K	ACTN3_uc010rpi.1_RNA	NM_001104	NP_001095	Q08043	ACTN3_HUMAN	actinin, alpha 3	898					focal adhesion assembly|muscle filament sliding|regulation of apoptosis	actin filament|cytosol|focal adhesion|pseudopodium	actin binding|calcium ion binding|integrin binding|protein homodimerization activity|structural constituent of muscle				0						CCTCTATGGGGAGAGCGACCT	0.622													11	40					0	0	1	0	0
CCS	9973	broad.mit.edu	37	11	66366651	66366651	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:66366651C>T	uc001oir.2	+	3	220	c.177C>T	c.(175-177)AGC>AGT	p.S59S	CCS_uc001ois.2_5'Flank	NM_005125	NP_005116	O14618	CCS_HUMAN	copper chaperone for superoxide dismutase	59	HMA.				intracellular copper ion transport|oxidation-reduction process|removal of superoxide radicals	cytosol|mitochondrial inner membrane|nucleus|soluble fraction	copper ion transmembrane transporter activity|protein binding|superoxide dismutase copper chaperone activity|zinc ion binding				0						CTCTACCCAGCCAGGAGGTGC	0.627													5	77					0	0	1	0	0
RBM14	10432	broad.mit.edu	37	11	66391954	66391954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:66391954C>T	uc001oit.2	+	2	746	c.607C>T	c.(607-609)CGT>TGT	p.R203C	RBM14_uc009yrh.2_Intron|RBM14_uc009yri.2_Intron|RBM4_uc009yrj.2_Intron|RBM4_uc009yrk.2_Intron	NM_006328	NP_006319	Q96PK6	RBM14_HUMAN	RNA binding motif protein 14	203					DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|histone deacetylation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus	mediator complex|ribonucleoprotein complex|transcription factor complex	ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|protein binding, bridging|RNA binding|RNA polymerase II transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						TGGGCAAGCCCGTCAGCCCAC	0.632													4	46					0	0	1	0	0
SPTBN2	6712	broad.mit.edu	37	11	66460820	66460820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:66460820G>A	uc001ojd.2	-	23	4763	c.4691C>T	c.(4690-4692)GCT>GTT	p.A1564V		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1564	Spectrin 12.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CTGCAGCTCAGCCAGCTCTGG	0.637													9	42					0	0	1	0	0
SYT12	91683	broad.mit.edu	37	11	66802235	66802235	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:66802235T>A	uc009yrl.2	+	3	384	c.154T>A	c.(154-156)TCT>ACT	p.S52T	SYT12_uc001oju.2_Missense_Mutation_p.S52T	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	52	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						CCCCAGCCCCTCTCCGTTCCC	0.632													7	57					0	0	1	0	0
SYT12	91683	broad.mit.edu	37	11	66807446	66807446	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:66807446C>T	uc009yrl.2	+	4	623	c.393C>T	c.(391-393)TCC>TCT	p.S131S	SYT12_uc001oju.2_Silent_p.S131S	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	131	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						TCCGGAAGTCCCAGTCGGCCG	0.607													7	54					0	0	1	0	0
KDM2A	22992	broad.mit.edu	37	11	67012810	67012810	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:67012810C>T	uc001ojw.2	+	14	2578	c.1714C>T	c.(1714-1716)CGA>TGA	p.R572*	KDM2A_uc001ojx.2_RNA|KDM2A_uc001ojy.2_Nonsense_Mutation_p.R266*|KDM2A_uc010rpn.1_Nonsense_Mutation_p.R133*|KDM2A_uc001ojz.1_Nonsense_Mutation_p.R30*	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	572	CXXC-type.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						AGTGCGATGTCGAAAATGCAA	0.552													11	39					0	0	1	0	0
ANKRD13D	338692	broad.mit.edu	37	11	67067323	67067323	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:67067323C>T	uc001okc.1	+	10	1156	c.645C>T	c.(643-645)TTC>TTT	p.F215F	ANKRD13D_uc001okd.1_Silent_p.F302F|ANKRD13D_uc001oke.1_Silent_p.F215F|ANKRD13D_uc001okg.1_5'UTR|ANKRD13D_uc001okh.1_5'UTR|ANKRD13D_uc001oki.1_5'Flank	NM_207354	NP_997237	Q6ZTN6	AN13D_HUMAN	ankyrin repeat domain 13 family, member D	215										ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			TCCAGTCCTTCCTGGGGATGG	0.706													11	56					0	0	1	0	0
CABP2	51475	broad.mit.edu	37	11	67287310	67287310	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:67287310G>A	uc001omc.1	-	6	693	c.591C>T	c.(589-591)ATC>ATT	p.I197I	CABP2_uc001omd.1_Silent_p.I140I|CABP2_uc001ome.1_Silent_p.I203I	NM_016366	NP_057450	Q9NPB3	CABP2_HUMAN	calcium binding protein 2 isoform 1	197	EF-hand 4.				signal transduction	Golgi apparatus|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1						CGTCCTGGAGGATCTCGTCCA	0.662													9	47					0	0	1	0	0
NUDT8	254552	broad.mit.edu	37	11	67395635	67395636	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:67395635_67395636GG>AA	uc001omo.1	-	4	511_512	c.492_493CC>TT	c.(490-495)TTCCGC>TTTTGC	p.R165C	NUDT8_uc001omn.2_3'UTR	NM_181843	NP_862826	Q8WV74	NUDT8_HUMAN	nudix-type motif 8	165	Nudix hydrolase.					mitochondrion	hydrolase activity|metal ion binding				0						AGTGTGTAGCGGAAGTGGCCAC	0.614													11	68					0	0	1	0	0
TBX10	347853	broad.mit.edu	37	11	67400524	67400524	+	Silent	SNP	G	A	A	rs149888346		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:67400524G>A	uc001omp.2	-	5	688	c.600C>T	c.(598-600)TTC>TTT	p.F200F		NM_005995	NP_005986	O75333	TBX10_HUMAN	T-box 10	200	T-box.			FV -> LL (in Ref. 3; AAC23481).	anatomical structure morphogenesis|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						GTGGGTCCACGAAGACCACGT	0.562													28	162					0	0	1	0	0
ALDH3B2	222	broad.mit.edu	37	11	67433035	67433035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:67433035C>T	uc001omr.2	-	7	866	c.427G>A	c.(427-429)GAC>AAC	p.D143N	ALDH3B2_uc001oms.2_Missense_Mutation_p.D143N|ALDH3B2_uc009ysa.1_Missense_Mutation_p.D143N	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	143					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	GTCTGGGGGTCGCAGTTGTCG	0.637													14	156					0	0	1	0	0
LRP5	4041	broad.mit.edu	37	11	68115558	68115558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:68115558G>A	uc001ont.2	+	2	410	c.335G>A	c.(334-336)GGC>GAC	p.G112D	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	112	Beta-propeller 1.|LDL-receptor class B 1.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						TCTCCCGACGGCCTCGCCTGC	0.637													20	100					0	0	1	0	0
LRP5	4041	broad.mit.edu	37	11	68154022	68154022	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:68154022C>T	uc001ont.2	+	6	1329	c.1254C>T	c.(1252-1254)CCC>CCT	p.P418P	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	418	LDL-receptor class B 6.|Beta-propeller 2.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						TCAACGACCCCGATGGCATCG	0.657													10	73					0	0	1	0	0
LRP5	4041	broad.mit.edu	37	11	68192669	68192669	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:68192669C>G	uc001ont.2	+	15	3411	c.3336C>G	c.(3334-3336)ATC>ATG	p.I1112M	LRP5_uc009ysg.2_Missense_Mutation_p.I522M	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1112	LDL-receptor class B 18.|Beta-propeller 4.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CCGGCCTCATCCGCCCTGTGG	0.642													3	40					0	0	1	0	0
LRP5	4041	broad.mit.edu	37	11	68193603	68193603	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:68193603C>T	uc001ont.2	+	16	3660	c.3585C>T	c.(3583-3585)GTC>GTT	p.V1195V	LRP5_uc009ysg.2_Silent_p.V605V	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1195	LDL-receptor class B 20.|Beta-propeller 4.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						AGGGCCGTGTCGCCCACCTCA	0.627													5	75					0	0	1	0	0
CPT1A	1374	broad.mit.edu	37	11	68571514	68571514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:68571514G>A	uc001oog.3	-	5	679	c.509C>T	c.(508-510)TCG>TTG	p.S170L	CPT1A_uc001oof.3_Missense_Mutation_p.S170L|CPT1A_uc009ysj.2_Missense_Mutation_p.S170L	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	170	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	GCGAGGCAGCGATGTCTGGAA	0.458													4	71					0	0	1	0	0
TPCN2	219931	broad.mit.edu	37	11	68852754	68852754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:68852754G>A	uc001oos.2	+	20	1954	c.1838G>A	c.(1837-1839)AGC>AAC	p.S613N	TPCN2_uc010rqg.1_Intron|TPCN2_uc001oot.2_RNA	NM_139075	NP_620714	Q8NHX9	TPC2_HUMAN	two pore segment channel 2	613	Extracellular (Potential).				cellular calcium ion homeostasis|smooth muscle contraction	endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated calcium channel activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			GGAAACAGCAGGTGAGGTGGG	0.612													7	73					0	0	1	0	0
ANO1	55107	broad.mit.edu	37	11	70031744	70031744	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:70031744C>T	uc001opj.2	+	25	2942	c.2637C>T	c.(2635-2637)ATC>ATT	p.I879I	ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Silent_p.I588I|ANO1_uc010rql.1_Silent_p.I53I	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	879	Extracellular (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						AGTACGACATCTCCAAGGACT	0.587													5	77					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70331667	70331667	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:70331667G>A	uc001oqc.2	-	21	4809	c.4731C>T	c.(4729-4731)ATC>ATT	p.I1577I	SHANK2_uc010rqn.1_Silent_p.I989I|SHANK2_uc001opz.2_Silent_p.I982I|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1198					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			cgggcggggggATAACAAAGC	0.428													10	72					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70332747	70332747	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:70332747G>A	uc001oqc.2	-	21	3729	c.3651C>T	c.(3649-3651)GCC>GCT	p.A1217A	SHANK2_uc010rqn.1_Silent_p.A629A|SHANK2_uc001opz.2_Silent_p.A622A|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	838					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding	p.I1217I(1)		ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			AGAGTGCCAGGGCCAGCGGGG	0.642													5	72					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70333466	70333466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:70333466G>A	uc001oqc.2	-	21	3010	c.2932C>T	c.(2932-2934)CGC>TGC	p.R978C	SHANK2_uc010rqn.1_Missense_Mutation_p.R390C|SHANK2_uc001opz.2_Missense_Mutation_p.R383C|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	599					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CTCTTGTTGCGGAAGTTGGCT	0.597													9	68					0	0	1	0	0
KRTAP5-7	440050	broad.mit.edu	37	11	71238544	71238544	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:71238544C>T	uc001oqq.1	+	1	232	c.198C>T	c.(196-198)GGC>GGT	p.G66G		NM_001012503	NP_001012521	Q6L8G8	KRA57_HUMAN	keratin associated protein 5-7	66	7 X 4 AA repeats of C-C-X-P.					keratin filament					0						CCAAGGGAGGCTGTGGCTCCT	0.572													11	180					0	0	1	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71276890	71276890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:71276890C>T	uc001oqt.1	+	1	282	c.257C>T	c.(256-258)TCC>TTC	p.S86F		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	86	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						GGCTGTGGTTCCTGTGGGGGC	0.687													9	116					0	0	1	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293788	71293788	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:71293788G>A	uc001oqu.2	-	1	134	c.96C>T	c.(94-96)GGC>GGT	p.G32G		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	32						keratin filament					0						AGCAGCTGGAGCCACAGCCCC	0.657													8	67					0	0	1	0	0
NUMA1	4926	broad.mit.edu	37	11	71726466	71726466	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:71726466G>A	uc001orl.1	-	15	2255	c.2083C>T	c.(2083-2085)CAG>TAG	p.Q695*	NUMA1_uc009ysw.1_Nonsense_Mutation_p.Q258*|NUMA1_uc001ork.1_Intron|NUMA1_uc001orm.1_Nonsense_Mutation_p.Q695*|NUMA1_uc001orn.2_Nonsense_Mutation_p.Q258*|NUMA1_uc009ysx.1_Nonsense_Mutation_p.Q695*|NUMA1_uc001oro.1_Nonsense_Mutation_p.Q695*	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	695	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						TCCTTCTCCTGGGCCACCCTT	0.597			T	RARA	APL								4	94					0	0	1	0	0
PDE2A	5138	broad.mit.edu	37	11	72291988	72291988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:72291988G>A	uc010rrc.1	-	24	2318	c.2075C>T	c.(2074-2076)TCC>TTC	p.S692F	PDE2A_uc001oso.2_Missense_Mutation_p.S671F|PDE2A_uc010rra.1_Missense_Mutation_p.S685F|PDE2A_uc001osn.2_Missense_Mutation_p.S436F|PDE2A_uc010rrb.1_Missense_Mutation_p.S683F|PDE2A_uc010rrd.1_Missense_Mutation_p.S577F	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	692	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	ACACATGCAGGAAATAAACAA	0.532													10	162					0	0	1	0	0
ARAP1	116985	broad.mit.edu	37	11	72404816	72404816	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:72404816G>A	uc001osu.2	-	28	3918	c.3729C>T	c.(3727-3729)CCC>CCT	p.P1243P	ARAP1_uc001osv.2_Silent_p.P1243P|ARAP1_uc001osr.2_Silent_p.P1003P|ARAP1_uc001oss.2_Silent_p.P998P|ARAP1_uc009yth.2_Silent_p.P937P|ARAP1_uc010rre.1_Silent_p.P998P	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1243	Ras-associating.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						CGTGCAGGATGGGCAGCACCT	0.642													9	49					0	0	1	0	0
FCHSD2	9873	broad.mit.edu	37	11	72551959	72551959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:72551959C>T	uc009ytl.2	-	19	2323	c.2102G>A	c.(2101-2103)AGG>AAG	p.R701K	FCHSD2_uc010rrg.1_Missense_Mutation_p.R565K|FCHSD2_uc001oth.3_Missense_Mutation_p.R645K|ATG16L2_uc009ytj.1_Intron	NM_014824	NP_055639	O94868	FCSD2_HUMAN	FCH and double SH3 domains 2	701							protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(5;3.3e-05)			AGGAGTATGCCTTGATGCCTG	0.408													20	315					0	0	1	0	0
P2RY2	5029	broad.mit.edu	37	11	72945846	72945846	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:72945846C>T	uc001otj.2	+	3	975	c.642C>T	c.(640-642)ATC>ATT	p.I214I	P2RY2_uc001otk.2_Silent_p.I214I|P2RY2_uc001otl.2_Silent_p.I214I	NM_002564	NP_002555	P41231	P2RY2_HUMAN	purinergic receptor P2Y2	214	Helical; Name=5; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(1)|skin(1)	4					Suramin(DB04786)	TTGCCGTCATCCTTGTCTGTT	0.642													5	29					0	0	1	0	0
DNAJB13	374407	broad.mit.edu	37	11	73670595	73670595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:73670595C>T	uc001ouo.2	+	3	980	c.229C>T	c.(229-231)CCT>TCT	p.P77S		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	77					apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					GGGTGGGATTCCTTTGGAGTT	0.517													4	52					0	0	1	0	0
UCP2	7351	broad.mit.edu	37	11	73687968	73687968	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:73687968G>A	uc001oup.1	-	5	812	c.432C>T	c.(430-432)TTC>TTT	p.F144F	UCP2_uc001ouq.1_Silent_p.F144F	NM_003355	NP_003346	P55851	UCP2_HUMAN	uncoupling protein 2	144	Solcar 2.				proton transport|respiratory electron transport chain	integral to membrane|mitochondrial inner membrane	binding				0	Breast(11;0.000112)					CCTGAGCTTGGAATCGGACCT	0.627													8	114					0	0	1	0	0
RNF169	254225	broad.mit.edu	37	11	74546825	74546826	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:74546825_74546826CC>TT	uc001ovl.3	+	6	1190_1191	c.1177_1178CC>TT	c.(1177-1179)CCC>TTC	p.P393F	XRRA1_uc001ovm.2_Intron	NM_001098638	NP_001092108	Q8NCN4	RN169_HUMAN	ring finger protein 169	393							zinc ion binding			ovary(1)	1						ATGTACTCCTCCCAAGAGACTC	0.505													4	77					0	0	1	0	0
MAP6	4135	broad.mit.edu	37	11	75298625	75298625	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:75298625G>A	uc001owu.2	-	4	1986	c.1921C>T	c.(1921-1923)CCC>TCC	p.P641S		NM_033063	NP_149052	Q96JE9	MAP6_HUMAN	microtubule-associated protein 6 isoform 1	641	Pro-rich.					Golgi apparatus|microtubule|perinuclear region of cytoplasm	calmodulin binding				0	Ovarian(111;0.11)					GGGACCATGGGATCTTGATCC	0.512													12	107					0	0	1	0	0
MOGAT2	80168	broad.mit.edu	37	11	75439132	75439132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:75439132C>T	uc010rru.1	+	4	593	c.593C>T	c.(592-594)TCC>TTC	p.S198F	MOGAT2_uc001oww.1_Missense_Mutation_p.S198F|MOGAT2_uc010rrv.1_Missense_Mutation_p.S116F	NM_025098	NP_079374	Q3SYC2	MOGT2_HUMAN	monoacylglycerol O-acyltransferase 2	198					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			ovary(2)	2	Ovarian(111;0.103)					AGGCCTGGATCCTTCACGCTG	0.582													4	37					0	0	1	0	0
LRRC32	2615	broad.mit.edu	37	11	76370750	76370750	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:76370750G>A	uc001oxq.3	-	3	2130	c.1887C>T	c.(1885-1887)ATC>ATT	p.I629I	LRRC32_uc001oxr.3_Silent_p.I629I|LRRC32_uc010rsf.1_Silent_p.I615I	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	629	Helical; (Potential).					integral to plasma membrane					0						TGAGGATGATGATGAGGTTGA	0.577													9	108					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76867915	76867915	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:76867915G>A	uc001oyb.2	+	7	872	c.600G>A	c.(598-600)GGG>GGA	p.G200G	MYO7A_uc010rsl.1_Silent_p.G200G|MYO7A_uc010rsm.1_Silent_p.G189G|MYO7A_uc001oyc.2_Silent_p.G200G	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	200	Myosin head-like.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						CAGCATTTGGGAATGCCAAGA	0.587													6	50					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76874015	76874015	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:76874015C>T	uc001oyb.2	+	14	1943	c.1671C>T	c.(1669-1671)ATC>ATT	p.I557I	MYO7A_uc010rsl.1_Silent_p.I557I|MYO7A_uc010rsm.1_Silent_p.I546I|MYO7A_uc001oyc.2_Silent_p.I557I	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	557	Myosin head-like.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						TTGCAGGCATCGTCTACTATG	0.557													6	129					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76918415	76918415	+	Missense_Mutation	SNP	G	A	A	rs111033192		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:76918415G>A	uc001oyb.2	+	42	6096	c.5824G>A	c.(5824-5826)GGA>AGA	p.G1942R	MYO7A_uc001oyc.2_Missense_Mutation_p.G1904R|MYO7A_uc001oye.2_RNA	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1942	FERM 2.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						GTCCTCAGAGGGATTCAGCCT	0.567													3	12					0	0	1	0	0
MYO7A	4647	broad.mit.edu	37	11	76918422	76918422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:76918422G>A	uc001oyb.2	+	42	6103	c.5831G>A	c.(5830-5832)AGC>AAC	p.S1944N	MYO7A_uc001oyc.2_Missense_Mutation_p.S1906N|MYO7A_uc001oye.2_RNA	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1944	FERM 2.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						GAGGGATTCAGCCTCTTTGTC	0.567													3	11					0	0	1	0	0
NARS2	79731	broad.mit.edu	37	11	78147750	78147750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:78147750G>A	uc001ozi.2	-	14	1776	c.1400C>T	c.(1399-1401)CCT>CTT	p.P467L	NARS2_uc010rsq.1_Missense_Mutation_p.P240L	NM_024678	NP_078954	Q96I59	SYNM_HUMAN	asparaginyl-tRNA synthetase 2, mitochondrial	467					asparaginyl-tRNA aminoacylation	mitochondrial matrix	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding			ovary(2)	2	all_cancers(14;2.63e-17)|all_epithelial(13;1.85e-19)				L-Asparagine(DB00174)	CCTTGGGAAAGGGATAACATC	0.463													8	111					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78380476	78380476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:78380476C>T	uc001ozl.3	-	32	7377	c.6914G>A	c.(6913-6915)AGC>AAC	p.S2305N	ODZ4_uc001ozk.3_Missense_Mutation_p.S530N|ODZ4_uc009yvb.1_Missense_Mutation_p.S889N	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2305	YD 22.|Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GTGGCTGTGGCTGCTCTTGCT	0.607													9	89					0	0	1	0	0
PRCP	5547	broad.mit.edu	37	11	82550375	82550375	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:82550375C>A	uc001ozs.2	-	7	1127	c.1014G>T	c.(1012-1014)TCG>TCT	p.S338S	PRCP_uc001ozr.2_Silent_p.S359S	NM_005040	NP_005031	P42785	PCP_HUMAN	prolylcarboxypeptidase isoform 1 preproprotein	338					blood coagulation, intrinsic pathway|proteolysis	lysosome|plasma membrane	protein binding|serine-type carboxypeptidase activity			skin(1)	1						TCACCTGGCCCGAATAATTGT	0.403													3	37					1	1	1	1	0
SYTL2	54843	broad.mit.edu	37	11	85445407	85445407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:85445407G>A	uc010rth.1	-	6	1238	c.962C>T	c.(961-963)TCT>TTT	p.S321F	SYTL2_uc010rtg.1_Missense_Mutation_p.S322F|SYTL2_uc010rti.1_Missense_Mutation_p.S321F|SYTL2_uc010rtj.1_Missense_Mutation_p.S273F|SYTL2_uc001pbf.3_Missense_Mutation_p.S321F|SYTL2_uc010rtf.1_Missense_Mutation_p.S179F	NM_001162951	NP_001156423	Q9HCH5	SYTL2_HUMAN	synaptotagmin-like 2 isoform g	321					intracellular protein transport|vesicle docking involved in exocytosis	exocytic vesicle|extrinsic to plasma membrane|melanosome|membrane fraction	neurexin binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding|Rab GTPase binding			ovary(2)|large_intestine(1)	3		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)		KIRC - Kidney renal clear cell carcinoma(183;0.202)|Kidney(183;0.237)		GTTTGGGGAAGAGTTGTCTTC	0.453													6	87					0	0	1	0	0
CTSC	1075	broad.mit.edu	37	11	88033707	88033707	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:88033707G>A	uc001pck.3	-	5	849	c.748C>T	c.(748-750)CGA>TGA	p.R250*	CTSC_uc001pcl.3_Nonsense_Mutation_p.R102*	NM_001814	NP_001805	P53634	CATC_HUMAN	cathepsin C isoform a preproprotein	250					immune response	lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				CCTTGGTTTCGAACAGGACTG	0.373													5	29					0	0	1	0	0
GRM5	2915	broad.mit.edu	37	11	88780812	88780812	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:88780812C>T	uc001pcq.2	-	1	429	c.229G>A	c.(229-231)GAA>AAA	p.E77K	GRM5_uc009yvm.2_Missense_Mutation_p.E77K|GRM5_uc009yvn.1_Missense_Mutation_p.E77K	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	77	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	TTGATCCTTTCCAGGGTATGC	0.542													3	9					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92087097	92087097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:92087097G>A	uc001pdj.3	+	1	1836	c.1819G>A	c.(1819-1821)GAA>AAA	p.E607K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	607	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CGATATCGATGAACTTGAACT	0.388										TCGA Ovarian(4;0.039)			5	69					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92257900	92257900	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:92257900C>T	uc001pdj.3	+	2	3410	c.3393C>T	c.(3391-3393)ACC>ACT	p.T1131T		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1131	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCTACTCCACCATTGAGGTCT	0.483										TCGA Ovarian(4;0.039)			18	229					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92258027	92258027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:92258027G>A	uc001pdj.3	+	2	3537	c.3520G>A	c.(3520-3522)GAT>AAT	p.D1174N		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1174	Cadherin 11.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCAGGCTGAAGATCCTGACTC	0.408										TCGA Ovarian(4;0.039)			22	203					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92531011	92531011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:92531011G>A	uc001pdj.3	+	9	4849	c.4832G>A	c.(4831-4833)GGG>GAG	p.G1611E		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1611	Cadherin 15.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GGGAACACTGGGAACATGTTT	0.398										TCGA Ovarian(4;0.039)			8	52					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92531700	92531700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:92531700C>T	uc001pdj.3	+	9	5538	c.5521C>T	c.(5521-5523)CAT>TAT	p.H1841Y		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1841	Cadherin 16.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CAACCTGGACCATGAAACCAT	0.468										TCGA Ovarian(4;0.039)			5	101					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92532833	92532833	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:92532833C>T	uc001pdj.3	+	9	6671	c.6654C>T	c.(6652-6654)ATC>ATT	p.I2218I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2218	Cadherin 20.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GCCAAGGCATCATATATATCA	0.403										TCGA Ovarian(4;0.039)			15	114					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92534885	92534885	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:92534885C>T	uc001pdj.3	+	9	8723	c.8706C>T	c.(8704-8706)TTC>TTT	p.F2902F		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2902	Cadherin 26.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GAGAGGCATTCTCTCTTTCCT	0.522										TCGA Ovarian(4;0.039)			11	145					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92616090	92616090	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:92616090C>T	uc001pdj.3	+	23	12485	c.12468C>T	c.(12466-12468)ATC>ATT	p.I4156I	FAT3_uc001pdi.3_Silent_p.I596I	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4156	Helical; (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AGGAGCTCATCGGCATCGCCG	0.592										TCGA Ovarian(4;0.039)			42	505					0	0	1	0	0
MTNR1B	4544	broad.mit.edu	37	11	92714791	92714791	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:92714791C>T	uc001pdk.1	+	2	505	c.402C>T	c.(400-402)ATC>ATT	p.I134I		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	134	Helical; Name=3; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	TCACTGCCATCGCCATTAACC	0.592													24	268					0	0	1	0	0
MED17	9440	broad.mit.edu	37	11	93530766	93530766	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:93530766G>A	uc001pem.3	+	8	1484	c.1209G>A	c.(1207-1209)AAG>AAA	p.K403K		NM_004268	NP_004259	Q9NVC6	MED17_HUMAN	mediator complex subunit 17	403					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex|transcription factor complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TTGGCCACAAGAGAATGAGAC	0.368													4	38					0	0	1	0	0
AMOTL1	154810	broad.mit.edu	37	11	94533272	94533272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:94533272C>T	uc001pfb.2	+	3	1086	c.916C>T	c.(916-918)CCT>TCT	p.P306S	AMOTL1_uc001pfc.2_Missense_Mutation_p.P256S	NM_130847	NP_570899	Q8IY63	AMOL1_HUMAN	angiomotin like 1	306						cytoplasm|tight junction	identical protein binding			ovary(1)|breast(1)	2		Acute lymphoblastic leukemia(157;2.38e-05)|all_hematologic(158;0.00824)				AGTGCTGGACCCTCGGGGTCC	0.597													7	93					0	0	1	0	0
ENDOD1	23052	broad.mit.edu	37	11	94861746	94861746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:94861746C>T	uc001pfh.2	+	2	581	c.506C>T	c.(505-507)TCC>TTC	p.S169F		NM_015036	NP_055851	O94919	ENDD1_HUMAN	endonuclease domain containing 1 precursor	169						extracellular region	endonuclease activity|metal ion binding|nucleic acid binding				0		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.00824)				ATGACTCAGTCCTTCCAGGAA	0.502													7	36					0	0	1	0	0
ANGPTL5	253935	broad.mit.edu	37	11	101762143	101762143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:101762143C>T	uc001pgl.2	-	9	1630	c.1034G>A	c.(1033-1035)GGC>GAC	p.G345D		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor	345	Fibrinogen C-terminal.				signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		GTGATGAATGCCATTTAGATT	0.448													4	49					0	0	1	0	0
KIAA1377	57562	broad.mit.edu	37	11	101818850	101818850	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:101818850C>T	uc001pgm.2	+	4	753	c.483C>T	c.(481-483)TCC>TCT	p.S161S	KIAA1377_uc001pgn.2_Silent_p.S117S|KIAA1377_uc009yxa.1_5'UTR	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	161							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		TTCCCTTTTCCCGTAGACCAA	0.343													3	16					0	0	1	0	0
MMP7	4316	broad.mit.edu	37	11	102398260	102398260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:102398260C>T	uc001phb.2	-	3	526	c.479G>A	c.(478-480)CGA>CAA	p.R160Q	MMP7_uc009yxd.2_Missense_Mutation_p.R160Q|MMP7_uc010rus.1_Missense_Mutation_p.R160Q	NM_002423	NP_002414	P09237	MMP7_HUMAN	matrix metalloproteinase 7 preproprotein	160					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(1)	1	all_cancers(8;2.04e-05)|all_epithelial(12;0.00053)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0105)|all cancers(10;0.0496)|Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0147)		CTTACCTCCTCGCGCAAAGCC	0.408													5	83					0	0	1	0	0
MMP7	4316	broad.mit.edu	37	11	102398512	102398512	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:102398512C>T	uc001phb.2	-	2	358	c.311G>A	c.(310-312)TGG>TAG	p.W104*	MMP7_uc009yxd.2_Nonsense_Mutation_p.W104*|MMP7_uc010rus.1_Nonsense_Mutation_p.W104*	NM_002423	NP_002414	P09237	MMP7_HUMAN	matrix metalloproteinase 7 preproprotein	104					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(1)	1	all_cancers(8;2.04e-05)|all_epithelial(12;0.00053)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0105)|all cancers(10;0.0496)|Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0147)		TTTGGAAGTCCATTTTGGGCT	0.413													9	55					0	0	1	0	0
DDI1	414301	broad.mit.edu	37	11	103907695	103907695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:103907695C>T	uc001phr.2	+	1	388	c.145C>T	c.(145-147)CAC>TAC	p.H49Y	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	49	Ubiquitin-like.				proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		CCAGATCATCCACATGGAGCG	0.562													8	89					0	0	1	0	0
GRIA4	2893	broad.mit.edu	37	11	105845060	105845060	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:105845060G>A	uc001pix.2	+	16	2879	c.2433G>A	c.(2431-2433)CTG>CTA	p.L811L	GRIA4_uc001piw.2_Silent_p.L811L|GRIA4_uc010rvm.1_RNA|GRIA4_uc009yxl.1_RNA	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	811	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	CCTTGAGCCTGAGCAATGTAG	0.473													5	59					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108380811	108380811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:108380811C>T	uc001pkk.2	-	6	5534	c.5423G>A	c.(5422-5424)CGA>CAA	p.R1808Q	EXPH5_uc010rvy.1_Missense_Mutation_p.R1620Q|EXPH5_uc010rvz.1_Missense_Mutation_p.R1652Q|EXPH5_uc010rwa.1_Missense_Mutation_p.R1732Q	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1808					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		ATGGCTTTTTCGTAGTAGATC	0.453													7	71					0	0	1	0	0
C11orf53	341032	broad.mit.edu	37	11	111155025	111155025	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:111155025G>A	uc001plc.2	+	3	379	c.232G>A	c.(232-234)GGC>AGC	p.G78S		NM_198498	NP_940900	Q8IXP5	CK053_HUMAN	hypothetical protein LOC341032	78											0		all_cancers(61;2.05e-09)|Melanoma(852;4.04e-05)|all_epithelial(67;6.15e-05)|all_hematologic(158;0.000826)|Acute lymphoblastic leukemia(157;0.000966)|all_neural(223;0.0332)|Medulloblastoma(222;0.0425)|Breast(348;0.147)		Epithelial(105;1.7e-06)|BRCA - Breast invasive adenocarcinoma(274;3.16e-06)|all cancers(92;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0507)		GCCCAACGCGGGCTCTCTGTT	0.667													5	29					0	0	1	0	0
PIH1D2	120379	broad.mit.edu	37	11	111941231	111941231	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:111941231G>A	uc001pmq.3	-	5	824	c.742C>T	c.(742-744)CTG>TTG	p.L248L	PIH1D2_uc009yyl.2_Silent_p.L248L|PIH1D2_uc001pmp.3_Silent_p.L248L|PIH1D2_uc010rws.1_Silent_p.L248L	NM_138789	NP_620144	Q8WWB5	PIHD2_HUMAN	PIH1 domain containing 2 isoform 1	248										ovary(1)	1		all_cancers(61;1.09e-14)|all_epithelial(67;7.64e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;3.19e-07)|BRCA - Breast invasive adenocarcinoma(274;6.17e-07)|all cancers(92;6.18e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0508)		TCAATTTTCAGAGGTTTCTCA	0.368													4	67					0	0	1	0	0
BCO2	83875	broad.mit.edu	37	11	112070449	112070449	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:112070449C>T	uc001pnf.2	+	6	881	c.764C>T	c.(763-765)CCT>CTT	p.P255L	BCO2_uc001pne.1_Missense_Mutation_p.P82L|BCO2_uc001png.2_Missense_Mutation_p.P182L|BCO2_uc001pnh.2_Missense_Mutation_p.P221L|BCO2_uc010rwt.1_Missense_Mutation_p.P150L|BCO2_uc009yyn.2_Missense_Mutation_p.P221L|BCO2_uc001pni.2_Missense_Mutation_p.P221L	NM_031938	NP_114144	Q9BYV7	BCDO2_HUMAN	beta-carotene dioxygenase 2 isoform a	255					carotene metabolic process|retinal metabolic process|retinoic acid metabolic process		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						ATTCGGGTTCCTCCAGAGAAG	0.403													7	48					0	0	1	0	0
DRD2	1813	broad.mit.edu	37	11	113281573	113281573	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:113281573A>G	uc001pnz.2	-	7	1529	c.1208T>C	c.(1207-1209)ATC>ACC	p.I403T	DRD2_uc010rwv.1_Missense_Mutation_p.I402T|DRD2_uc001poa.3_Missense_Mutation_p.I403T|DRD2_uc001pob.3_Missense_Mutation_p.I374T	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	403	Extracellular (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	GACAGGCGGGATGTTGCAGTC	0.572													4	61					0	0	1	0	0
DRD2	1813	broad.mit.edu	37	11	113287661	113287661	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:113287661G>A	uc001pnz.2	-	3	777	c.456C>T	c.(454-456)GTC>GTT	p.V152V	DRD2_uc010rwv.1_Silent_p.V151V|DRD2_uc001poa.3_Silent_p.V152V|DRD2_uc001pob.3_Silent_p.V152V|DRD2_uc009yyr.1_Silent_p.V152V	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	152	Helical; Name=4; (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	TCATGACGGTGACCCGGCGCT	0.582													4	26					0	0	1	0	0
HTR3B	9177	broad.mit.edu	37	11	113816807	113816807	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:113816807G>C	uc001pok.2	+	9	1341	c.1274G>C	c.(1273-1275)GGG>GCG	p.G425A	HTR3B_uc001pol.2_Missense_Mutation_p.G414A	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	425	Helical; Name=4; (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		TTCATGCTGGGGATCTACACC	0.552													4	54					0	0	1	0	0
HTR3A	3359	broad.mit.edu	37	11	113856862	113856862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:113856862G>A	uc010rxb.1	+	6	921	c.688G>A	c.(688-690)GAA>AAA	p.E230K	HTR3A_uc010rxa.1_Missense_Mutation_p.E230K|HTR3A_uc009yyx.2_Intron|HTR3A_uc010rxc.1_Missense_Mutation_p.E209K	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	224	Extracellular (Potential).				digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	GTTCAGCATGGAAAGCAGTAA	0.483													11	136					0	0	1	0	0
HTR3A	3359	broad.mit.edu	37	11	113857312	113857312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:113857312G>A	uc010rxb.1	+	7	1029	c.796G>A	c.(796-798)GAC>AAC	p.D266N	HTR3A_uc010rxa.1_Missense_Mutation_p.D266N|HTR3A_uc009yyx.2_RNA|HTR3A_uc010rxc.1_Missense_Mutation_p.D245N	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	260	Helical; Name=1; (Potential).				digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	CATGGTCATGGACATCGTGGG	0.577													8	64					0	0	1	0	0
SIK3	23387	broad.mit.edu	37	11	116730317	116730317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:116730317G>A	uc001ppy.2	-	19	2147	c.2111C>T	c.(2110-2112)GCT>GTT	p.A704V	SIK3_uc001ppz.2_Missense_Mutation_p.A603V|SIK3_uc001pqa.2_Missense_Mutation_p.A704V|SIK3_uc001ppw.2_Missense_Mutation_p.A121V|SIK3_uc001ppx.2_Missense_Mutation_p.A142V|SIK3_uc001pqb.2_Missense_Mutation_p.A7V	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	704	Gln-rich.					cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						AGAAGATGCAGCCCCTGGAGA	0.527											OREG0003491	type=REGULATORY REGION|Gene=AK022302|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	12	113					0	0	1	0	0
CEP164	22897	broad.mit.edu	37	11	117261780	117261780	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:117261780G>A	uc001prc.2	+	17	2279	c.2132G>A	c.(2131-2133)AGG>AAG	p.R711K	CEP164_uc001prb.2_Missense_Mutation_p.R714K|CEP164_uc010rxk.1_Missense_Mutation_p.R685K|CEP164_uc001prf.2_Intron|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_Missense_Mutation_p.R144K	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	711	Glu-rich.				cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		AAGGCTGAGAGGGCCAGCTTG	0.542													4	73					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117335656	117335656	+	Splice_Site	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:117335656A>T	uc001prh.1	-	17	3447	c.3445_splice	c.e17+1	p.V1149_splice		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1						axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		TGGGGCCCTCACCATCCTCCA	0.632													3	28					0	0	1	0	0
TMPRSS4	56649	broad.mit.edu	37	11	117973909	117973909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:117973909C>T	uc010rxo.1	+	4	542	c.251C>T	c.(250-252)CCC>CTC	p.P84L	TMPRSS4_uc010rxp.1_Missense_Mutation_p.P84L|TMPRSS4_uc010rxq.1_5'UTR|TMPRSS4_uc010rxr.1_Missense_Mutation_p.P59L|TMPRSS4_uc010rxs.1_Missense_Mutation_p.P44L|TMPRSS4_uc009yzu.2_RNA|TMPRSS4_uc010rxt.1_Missense_Mutation_p.P59L	NM_019894	NP_063947	Q9NRS4	TMPS4_HUMAN	transmembrane protease, serine 4 isoform 1	84	Extracellular (Potential).|LDL-receptor class A.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0431)|all_hematologic(192;0.164)|Breast(348;0.183)|all_neural(223;0.238)		BRCA - Breast invasive adenocarcinoma(274;4.16e-05)|Epithelial(105;0.00204)		CTGGACTGTCCCTTGGGGGAG	0.587													14	145					0	0	1	0	0
TMPRSS4	56649	broad.mit.edu	37	11	117973950	117973950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:117973950G>A	uc010rxo.1	+	4	583	c.292G>A	c.(292-294)GAA>AAA	p.E98K	TMPRSS4_uc010rxp.1_Missense_Mutation_p.E98K|TMPRSS4_uc010rxq.1_5'UTR|TMPRSS4_uc010rxr.1_Missense_Mutation_p.E73K|TMPRSS4_uc010rxs.1_Missense_Mutation_p.E58K|TMPRSS4_uc009yzu.2_RNA|TMPRSS4_uc010rxt.1_Missense_Mutation_p.E73K	NM_019894	NP_063947	Q9NRS4	TMPS4_HUMAN	transmembrane protease, serine 4 isoform 1	98	Extracellular (Potential).|SRCR.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0431)|all_hematologic(192;0.164)|Breast(348;0.183)|all_neural(223;0.238)		BRCA - Breast invasive adenocarcinoma(274;4.16e-05)|Epithelial(105;0.00204)		GAGCTTCCCCGAAGGGCCTGC	0.632													13	95					0	0	1	0	0
CD3D	915	broad.mit.edu	37	11	118209930	118209930	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:118209930G>A	uc001pss.1	-	5	600	c.463C>T	c.(463-465)CGA>TGA	p.R155*	CD3D_uc001pst.1_Nonsense_Mutation_p.R111*	NM_000732	NP_000723	P04234	CD3D_HUMAN	CD3 antigen, delta subunit isoform A precursor	155	ITAM.|Cytoplasmic (Potential).				positive thymic T cell selection|T cell costimulation|T cell receptor signaling pathway	cytoplasm|integral to membrane	protein heterodimerization activity			ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		GCATCATCTCGATCTCGGAGG	0.542													9	63					0	0	1	0	0
MLL	4297	broad.mit.edu	37	11	118375975	118375975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:118375975C>T	uc001pta.2	+	27	9382	c.9359C>T	c.(9358-9360)TCA>TTA	p.S3120L	MLL_uc001ptb.2_Missense_Mutation_p.S3123L	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	3120					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		ACAAATACTTCAGTATTGGGA	0.443			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								10	98					0	0	1	0	0
UPK2	7379	broad.mit.edu	37	11	118828810	118828810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:118828810G>A	uc001puh.2	+	5	457	c.422G>A	c.(421-423)AGG>AAG	p.R141K		NM_006760	NP_006751	O00526	UPK2_HUMAN	uroplakin 2 precursor	141	Lumenal (Potential).				cellular membrane organization|epithelial cell differentiation|multicellular organismal development	integral to endoplasmic reticulum membrane|integral to plasma membrane				skin(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.122)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;7.47e-05)		TTGACAGGAAGGAACATGGAA	0.602													4	69					0	0	1	0	0
HYOU1	10525	broad.mit.edu	37	11	118925730	118925730	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:118925730G>A	uc001puu.2	-	6	655	c.462C>T	c.(460-462)CTC>CTT	p.L154L	HYOU1_uc001put.2_Silent_p.L119L|HYOU1_uc010ryu.1_Silent_p.L174L|HYOU1_uc010ryv.1_Silent_p.L43L|HYOU1_uc001pux.3_Silent_p.L154L|HYOU1_uc010ryw.1_RNA|HYOU1_uc001puw.1_Silent_p.L154L	NM_006389	NP_006380	Q9Y4L1	HYOU1_HUMAN	hypoxia up-regulated 1 precursor	154						endoplasmic reticulum lumen	ATP binding|protein binding				0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)|all_hematologic(192;0.207)		BRCA - Breast invasive adenocarcinoma(274;7.78e-05)		GAGAATAATTGAGAACCATGC	0.498													5	51					0	0	1	0	0
HMBS	3145	broad.mit.edu	37	11	118963727	118963727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:118963727C>T	uc001puz.1	+	13	1065	c.908C>T	c.(907-909)GCC>GTC	p.A303V	HMBS_uc001pvc.1_Missense_Mutation_p.A248V|HMBS_uc009zap.1_Missense_Mutation_p.A286V|HMBS_uc001pva.1_Missense_Mutation_p.A263V|HMBS_uc001pvb.1_Missense_Mutation_p.A272V|HMBS_uc001pvd.1_Missense_Mutation_p.A286V|HMBS_uc001pve.1_Missense_Mutation_p.A246V|HMBS_uc001pvf.1_Missense_Mutation_p.A286V	NM_000190	NP_000181	P08397	HEM3_HUMAN	hydroxymethylbilane synthase isoform 1	303					peptidyl-pyrromethane cofactor linkage	cytosol	hydroxymethylbilane synthase activity				0	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.72e-05)		CATGTCCCTGCCCAGGTACCA	0.502									Porphyria_Acute_Intermittent				6	48					0	0	1	0	0
PDZD3	79849	broad.mit.edu	37	11	119060201	119060201	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:119060201G>A	uc001pwb.2	+	9	2240	c.1716G>A	c.(1714-1716)TAG>TAA	p.*572*	PDZD3_uc001pvy.2_Silent_p.*492*|PDZD3_uc001pvz.2_Silent_p.*506*|PDZD3_uc010rzd.1_Silent_p.*493*|PDZD3_uc001pwa.2_Silent_p.*202*			Q86UT5	NHRF4_HUMAN	RecName: Full=Na(+)/H(+) exchange regulatory cofactor NHE-RF4;          Short=NHERF-4; AltName: Full=PDZ domain-containing protein 3; AltName: Full=PDZ domain-containing protein 2; AltName: Full=Intestinal and kidney-enriched PDZ protein; AltName: Full=Sodium-hydrogen exchanger regulatory factor 4;	572					cGMP-mediated signaling|ion transport|negative regulation of cGMP biosynthetic process|response to toxin|water transport	apical part of cell|brush border|cytosol|membrane fraction|subapical complex	guanylate cyclase inhibitor activity|ion channel inhibitor activity|protein C-terminus binding			breast(1)	1	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;7.52e-05)		ATCTACTGTAGAGCACCCCTG	0.562													12	97					0	0	1	0	0
CCDC153	283152	broad.mit.edu	37	11	119061433	119061433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:119061433C>T	uc010rze.1	-	6	554	c.466G>A	c.(466-468)GAG>AAG	p.E156K		NM_001145018	NP_001138490	Q494R4	CC153_HUMAN	coiled-coil domain containing 153	156	Potential.										0						AAGATTTCCTCATACTTCGCC	0.607													7	81					0	0	1	0	0
CBL	867	broad.mit.edu	37	11	119149244	119149244	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:119149244T>C	uc001pwe.2	+	9	1390	c.1252T>C	c.(1252-1254)TTC>CTC	p.F418L		NM_005188	NP_005179	P22681	CBL_HUMAN	Cas-Br-M (murine) ecotropic retroviral	418	Asp/Glu-rich (acidic).|RING-type.				epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of receptor-mediated endocytosis	cytosol|nucleus	calcium ion binding|sequence-specific DNA binding transcription factor activity|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding	p.F418S(2)|p.G397_I429del(1)|p.F418L(1)|p.E366_K477del(1)		haematopoietic_and_lymphoid_tissue(135)|lung(10)|central_nervous_system(2)|ovary(1)|breast(1)	149		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.92e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.000784)		GGGCTGTCCTTTCTGCCGATG	0.433									CBL_gene-associated_Juvenile_Myelomonocytic_Leukemia_and_Developmental_Anomalies|Noonan_syndrome				3	79					0	0	1	0	0
USP2	9099	broad.mit.edu	37	11	119243747	119243747	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:119243747C>T	uc001pwm.3	-	2	739	c.444G>A	c.(442-444)CGG>CGA	p.R148R	USP2_uc001pwn.3_Intron	NM_004205	NP_004196	O75604	UBP2_HUMAN	ubiquitin specific peptidase 2 isoform a	148	Necessary for interaction with MDM4.				cell cycle|muscle organ development|negative regulation of transcription from RNA polymerase II promoter|positive regulation of mitotic cell cycle|protein deubiquitination|protein stabilization|ubiquitin-dependent protein catabolic process	nucleus|perinuclear region of cytoplasm	cyclin binding|cysteine-type endopeptidase activity|metal ion binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity			ovary(2)|urinary_tract(1)|skin(1)	4		all_hematologic(192;4.65e-05)|Breast(348;0.0101)|all_neural(223;0.0218)|Medulloblastoma(222;0.0425)|Renal(330;0.157)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.000513)|Colorectal(284;0.0116)|Lung(307;0.0853)|LUSC - Lung squamous cell carcinoma(976;0.0889)		TGGAGAAATCCCGGGCCAGGT	0.622													6	102					0	0	1	0	0
GRIK4	2900	broad.mit.edu	37	11	120702595	120702595	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:120702595C>T	uc001pxn.2	+	7	833	c.546C>T	c.(544-546)TTC>TTT	p.F182F	GRIK4_uc009zav.1_Silent_p.F182F|GRIK4_uc009zaw.1_Silent_p.F182F|GRIK4_uc009zax.1_Silent_p.F182F	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	182	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	TCCGGCAATTCCTTATCTCCA	0.602													5	58					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	121060540	121060540	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:121060540C>A	uc010rzo.1	+	22	6318	c.6318C>A	c.(6316-6318)CTC>CTA	p.L2106L		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	2106					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		ATGGGCCTCTCTGCAGCTGTG	0.567													4	53					1	1	1	1	0
UBASH3B	84959	broad.mit.edu	37	11	122666886	122666886	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:122666886C>T	uc001pyi.3	+	8	1496	c.1136C>T	c.(1135-1137)CCC>CTC	p.P379L		NM_032873	NP_116262	Q8TF42	UBS3B_HUMAN	ubiquitin associated and SH3 domain containing,	379						cytoplasm|nucleus	protein tyrosine phosphatase activity			central_nervous_system(1)	1		Breast(109;0.00254)|Medulloblastoma(222;0.00877)|Lung NSC(97;0.0183)|all_lung(97;0.0186)|all_neural(223;0.0381)|all_hematologic(192;0.104)		BRCA - Breast invasive adenocarcinoma(274;1.37e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0463)		AACAGCCAGCCCGGCCCCCAG	0.547											OREG0021442	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	65					0	0	1	0	0
CRTAM	56253	broad.mit.edu	37	11	122742083	122742083	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:122742083C>T	uc001pyj.2	+	10	1158	c.1158C>T	c.(1156-1158)ATC>ATT	p.I386I	CRTAM_uc001pyk.2_Silent_p.I187I	NM_019604	NP_062550	O95727	CRTAM_HUMAN	class-I MHC-restricted T cell associated	386	Cytoplasmic (Potential).				cell recognition|detection of tumor cell|positive regulation of cytokine secretion|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	integral to membrane|plasma membrane	receptor binding			ovary(1)	1		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.28e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		AAAAGCACATCCAAGTACCAG	0.443													4	33					0	0	1	0	0
C11orf63	79864	broad.mit.edu	37	11	122756840	122756840	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:122756840A>G	uc001pym.2	+	2	580	c.283A>G	c.(283-285)AAA>GAA	p.K95E	C11orf63_uc001pyl.1_Missense_Mutation_p.K95E	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	95										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		AGCAAGTGGAAAAGCAGCTCA	0.532													6	57					0	0	1	0	0
HSPA8	3312	broad.mit.edu	37	11	122930713	122930713	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:122930713G>A	uc001pyo.2	-	5	666	c.588C>T	c.(586-588)CTC>CTT	p.L196L	HSPA8_uc009zbc.2_5'UTR|HSPA8_uc001pyp.2_Silent_p.L196L|HSPA8_uc010rzu.1_Silent_p.L119L|HSPA8_uc009zbd.1_Silent_p.L196L|HSPA8_uc010rzv.1_3'UTR	NM_006597	NP_006588	P11142	HSP7C_HUMAN	heat shock 70kDa protein 8 isoform 1	196	Interaction with BAG1.				cellular membrane organization|interspecies interaction between organisms|mRNA metabolic process|negative regulation of transcription, DNA-dependent|neurotransmitter secretion|post-Golgi vesicle-mediated transport|protein folding|response to unfolded protein|transcription, DNA-dependent	cell surface|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|melanosome|plasma membrane|ribonucleoprotein complex	ATP binding|ATPase activity, coupled|protein binding	p.L196L(1)		central_nervous_system(7)|lung(1)	8		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		GGTCAAAGATGAGCACGTTTC	0.408													5	36					0	0	1	0	0
OR4D5	219875	broad.mit.edu	37	11	123810752	123810752	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:123810752C>T	uc001pzk.1	+	1	429	c.429C>T	c.(427-429)CTC>CTT	p.L143L		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	143	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TCTGTGCACTCCTTATGGCAG	0.522													4	45					0	0	1	0	0
OR6T1	219874	broad.mit.edu	37	11	123814091	123814091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:123814091C>T	uc010sab.1	-	1	455	c.455G>A	c.(454-456)GGA>GAA	p.G152E		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		CCAGAGGAATCCAGCTAGCCA	0.562													3	19					0	0	1	0	0
OR6T1	219874	broad.mit.edu	37	11	123814360	123814360	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:123814360G>A	uc010sab.1	-	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		AATTCCGCAGGAAGAAGTACA	0.488													8	43					0	0	1	0	0
OR10G7	390265	broad.mit.edu	37	11	123909254	123909254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:123909254G>A	uc001pzq.1	-	1	455	c.455C>T	c.(454-456)TCT>TTT	p.S152F		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		AGAGTGCAGAGAGCCACTGAG	0.562													11	105					0	0	1	0	0
VWA5A	4013	broad.mit.edu	37	11	124005659	124005660	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:124005659_124005660CC>TT	uc001pzu.2	+	12	1486_1487	c.1277_1278CC>TT	c.(1276-1278)TCC>TTT	p.S426F	VWA5A_uc001pzt.2_Missense_Mutation_p.S426F	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	426	VWFA.									upper_aerodigestive_tract(1)|ovary(1)	2						GAAGGCACCTCCACCAGCCTAA	0.441													7	25					0	0	1	0	0
OR8B3	390271	broad.mit.edu	37	11	124266685	124266685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:124266685G>A	uc010saj.1	-	1	563	c.563C>T	c.(562-564)TCC>TTC	p.S188F	OR8B2_uc001qab.3_Intron	NM_001005467	NP_001005467	Q8NGG8	OR8B3_HUMAN	olfactory receptor, family 8, subfamily B,	188	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		GCTGGTGCAGGAAAGCTGGAG	0.473													4	32					0	0	1	0	0
OR8B12	219858	broad.mit.edu	37	11	124413072	124413072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:124413072C>T	uc010sam.1	-	1	479	c.479G>A	c.(478-480)GGA>GAA	p.G160E		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	160	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		CATTATGCTTCCTGTGTGGGC	0.502													4	14					0	0	1	0	0
ROBO3	64221	broad.mit.edu	37	11	124750327	124750327	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:124750327C>T	uc001qbc.2	+	27	4164	c.3972C>T	c.(3970-3972)CTC>CTT	p.L1324L	ROBO3_uc001qbd.2_Silent_p.L249L|ROBO3_uc010sar.1_Silent_p.L373L|ROBO3_uc001qbe.2_Silent_p.L249L|ROBO3_uc001qbf.1_Silent_p.L208L	NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	1324	Cytoplasmic (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		AGGCCTGGCTCCCATACAGCA	0.637													4	17					0	0	1	0	0
ROBO4	54538	broad.mit.edu	37	11	124756538	124756538	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:124756538G>A	uc001qbg.2	-	16	2756	c.2616C>T	c.(2614-2616)TCC>TCT	p.S872S	ROBO4_uc010sas.1_Silent_p.S727S|ROBO4_uc001qbh.2_3'UTR|ROBO4_uc001qbi.2_Silent_p.S430S	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	872					angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		CATTGGCTAAGGAGCCCTCGC	0.667													7	25					0	0	1	0	0
STT3A	3703	broad.mit.edu	37	11	125479474	125479474	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:125479474C>T	uc001qcd.2	+	10	1217	c.1107C>T	c.(1105-1107)TTC>TTT	p.F369F	STT3A_uc009zbm.2_Silent_p.F369F|STT3A_uc001qce.2_Silent_p.F369F|STT3A_uc010sbg.1_Silent_p.F277F|STT3A_uc009zbn.2_Intron	NM_152713	NP_689926	P46977	STT3A_HUMAN	integral membrane protein 1	369	Helical; (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity				0	all_hematologic(175;0.228)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0996)		TCCTCGTCTTCATGTTTCCAG	0.438													5	89					0	0	1	0	0
ACRV1	56	broad.mit.edu	37	11	125547731	125547731	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:125547731C>G	uc001qcs.2	-	2	781	c.514G>C	c.(514-516)GAA>CAA	p.E172Q	ACRV1_uc001qck.2_Intron|ACRV1_uc001qcl.2_Missense_Mutation_p.E102Q|ACRV1_uc001qcm.2_Intron|ACRV1_uc001qcn.2_Missense_Mutation_p.E117Q|ACRV1_uc001qco.2_Missense_Mutation_p.E77Q|ACRV1_uc001qcp.2_Intron|ACRV1_uc001qcq.2_Missense_Mutation_p.E102Q|ACRV1_uc001qcr.2_Intron	NM_001612	NP_001603	P26436	ASPX_HUMAN	acrosomal vesicle protein 1 isoform a precursor	172	3-9.|9 X 5 AA repeats of [SV]-G-E-Q-[PSA].				multicellular organismal development	acrosomal vesicle					0	all_hematologic(175;0.177)	Breast(109;0.0021)|all_lung(97;0.0179)|Lung NSC(97;0.0185)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0713)		GAAGCCTGTTCCCCTGAAGCG	0.542													9	33					0	0	1	0	0
ACRV1	56	broad.mit.edu	37	11	125547733	125547733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:125547733C>T	uc001qcs.2	-	2	779	c.512G>A	c.(511-513)GGG>GAG	p.G171E	ACRV1_uc001qck.2_Intron|ACRV1_uc001qcl.2_Missense_Mutation_p.G101E|ACRV1_uc001qcm.2_Intron|ACRV1_uc001qcn.2_Missense_Mutation_p.G116E|ACRV1_uc001qco.2_Missense_Mutation_p.G76E|ACRV1_uc001qcp.2_Intron|ACRV1_uc001qcq.2_Missense_Mutation_p.G101E|ACRV1_uc001qcr.2_Intron	NM_001612	NP_001603	P26436	ASPX_HUMAN	acrosomal vesicle protein 1 isoform a precursor	171	3-9.|9 X 5 AA repeats of [SV]-G-E-Q-[PSA].				multicellular organismal development	acrosomal vesicle					0	all_hematologic(175;0.177)	Breast(109;0.0021)|all_lung(97;0.0179)|Lung NSC(97;0.0185)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0713)		AGCCTGTTCCCCTGAAGCGTG	0.542													10	35					0	0	1	0	0
RPUSD4	84881	broad.mit.edu	37	11	126081442	126081442	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:126081442A>T	uc001qde.2	-	1	146	c.92T>A	c.(91-93)TTT>TAT	p.F31Y	FAM118B_uc001qdf.2_5'Flank|FAM118B_uc009zca.2_5'Flank|FAM118B_uc001qdg.2_5'Flank|RPUSD4_uc009zbz.2_Missense_Mutation_p.F31Y|RPUSD4_uc009zby.2_RNA	NM_032795	NP_116184	Q96CM3	RUSD4_HUMAN	RNA pseudouridylate synthase domain containing 4	31					pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			breast(1)	1	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0761)		AGCGGCACAAAATGGCTTTGA	0.607													16	185					0	0	1	0	0
FLI1	2313	broad.mit.edu	37	11	128680798	128680798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:128680798C>T	uc010sbu.1	+	9	1615	c.1274C>T	c.(1273-1275)TCC>TTC	p.S425F	FLI1_uc010sbt.1_Missense_Mutation_p.S232F|FLI1_uc010sbv.1_Missense_Mutation_p.S392F|FLI1_uc009zci.2_Missense_Mutation_p.S359F	NM_002017	NP_002008	Q01543	FLI1_HUMAN	Friend leukemia virus integration 1	425					hemostasis|organ morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/FLI1(2266)	bone(2210)|soft_tissue(48)|autonomic_ganglia(4)|central_nervous_system(4)|lung(3)|ovary(2)|pancreas(2)	2273	all_hematologic(175;0.0641)	Lung NSC(97;0.00588)|all_lung(97;0.00764)|Breast(109;0.0115)|Medulloblastoma(222;0.0523)|all_neural(223;0.0862)|all_hematologic(192;0.182)		OV - Ovarian serous cystadenocarcinoma(99;0.01)|LUSC - Lung squamous cell carcinoma(976;0.0324)|Lung(977;0.0327)		TACTGGACCTCCCCCACGGGG	0.567			T	EWSR1	Ewing sarcoma								5	51					0	0	1	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781871	128781871	+	Missense_Mutation	SNP	C	T	T	rs148462487		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:128781871C>T	uc001qet.2	+	2	1017	c.703C>T	c.(703-705)CGG>TGG	p.R235W	KCNJ5_uc009zck.2_Missense_Mutation_p.R235W|KCNJ5_uc001qew.2_Missense_Mutation_p.R235W	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	235	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	GGCCTCCATCCGGGCCAAGCT	0.607													9	75					0	0	1	0	0
BARX2	8538	broad.mit.edu	37	11	129246117	129246117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:129246117G>A	uc001qfc.3	+	1	237	c.187G>A	c.(187-189)GGC>AGC	p.G63S		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	63											0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		TTCCTGTACGGGTAAGACGCT	0.572											OREG0021508	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	135					0	0	1	0	0
PRDM10	56980	broad.mit.edu	37	11	129782110	129782110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:129782110G>A	uc001qfm.2	-	19	3096	c.2864C>T	c.(2863-2865)CCT>CTT	p.P955L	PRDM10_uc001qfj.2_Missense_Mutation_p.P869L|PRDM10_uc001qfk.2_Intron|PRDM10_uc001qfl.2_Missense_Mutation_p.P869L|PRDM10_uc010sbx.1_Missense_Mutation_p.P865L|PRDM10_uc001qfn.2_Missense_Mutation_p.P951L	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1	955	Gln-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		TGACTGGTGAGGGGAAGTGGC	0.512													4	83					0	0	1	0	0
PRDM10	56980	broad.mit.edu	37	11	129784872	129784872	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:129784872G>A	uc001qfm.2	-	18	2812	c.2580C>T	c.(2578-2580)TTC>TTT	p.F860F	PRDM10_uc001qfj.2_Silent_p.F774F|PRDM10_uc001qfk.2_Silent_p.F770F|PRDM10_uc001qfl.2_Silent_p.F774F|PRDM10_uc010sbx.1_Silent_p.F770F|PRDM10_uc001qfn.2_Silent_p.F856F|PRDM10_uc009zcs.1_Silent_p.F43F	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1	860					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		AGAGCTGGGCGAACTCTGGAT	0.468													7	84					0	0	1	0	0
APLP2	334	broad.mit.edu	37	11	129999051	129999051	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:129999051C>T	uc010sby.1	+	10	1562	c.1405C>T	c.(1405-1407)CGG>TGG	p.R469W	APLP2_uc001qfp.2_Missense_Mutation_p.R469W|APLP2_uc001qfq.2_Missense_Mutation_p.R413W|APLP2_uc010sbz.1_Missense_Mutation_p.R257W|APLP2_uc001qfr.2_Missense_Mutation_p.R235W|APLP2_uc001qfs.2_Missense_Mutation_p.R240W|APLP2_uc001qfv.2_Missense_Mutation_p.R360W	NM_001642	NP_001633	Q06481	APLP2_HUMAN	amyloid beta (A4) precursor-like protein 2	469	Extracellular (Potential).				G-protein coupled receptor protein signaling pathway	integral to membrane|nucleus|plasma membrane	DNA binding|identical protein binding|serine-type endopeptidase inhibitor activity			ovary(3)	3	all_hematologic(175;0.0429)	Breast(109;0.00586)|Lung NSC(97;0.00785)|all_lung(97;0.0154)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0197)|Lung(977;0.24)		TGACCGCCGTCGGATGGCTCT	0.592													8	74					0	0	1	0	0
APLP2	334	broad.mit.edu	37	11	129999953	129999953	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:129999953C>T	uc010sby.1	+	11	1633	c.1476C>T	c.(1474-1476)GCC>GCT	p.A492A	APLP2_uc001qfp.2_Silent_p.A492A|APLP2_uc001qfq.2_Silent_p.A436A|APLP2_uc010sbz.1_Silent_p.A280A|APLP2_uc001qfr.2_Silent_p.A258A|APLP2_uc001qfs.2_Silent_p.A263A|APLP2_uc001qfv.2_Silent_p.A383A	NM_001642	NP_001633	Q06481	APLP2_HUMAN	amyloid beta (A4) precursor-like protein 2	492	Extracellular (Potential).				G-protein coupled receptor protein signaling pathway	integral to membrane|nucleus|plasma membrane	DNA binding|identical protein binding|serine-type endopeptidase inhibitor activity			ovary(3)	3	all_hematologic(175;0.0429)	Breast(109;0.00586)|Lung NSC(97;0.00785)|all_lung(97;0.0154)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0197)|Lung(977;0.24)		TTCTCCAGGCCTTACGGCGTT	0.448													12	68					0	0	1	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130288974	130288974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:130288974C>T	uc001qgg.3	-	2	1292	c.934G>A	c.(934-936)GAC>AAC	p.D312N		NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	312	Peptidase M12B.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		ATGGCCGTGTCGTAGTGCTCT	0.642													8	148					0	0	1	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130343217	130343217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:130343217C>T	uc010scd.1	+	8	2354	c.2354C>T	c.(2353-2355)TCC>TTC	p.S785F		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	785	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		GAGGTCCTCTCCGTGGGGAAG	0.672													5	103					0	0	1	0	0
OPCML	4978	broad.mit.edu	37	11	132527177	132527177	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:132527177G>A	uc001qgs.2	-	2	255	c.205C>T	c.(205-207)CTA>TTA	p.L69L	OPCML_uc001qgu.2_Silent_p.L62L|OPCML_uc010sck.1_Silent_p.L69L|OPCML_uc001qgt.2_Silent_p.L69L|OPCML_uc010scl.1_Silent_p.L28L	NM_002545	NP_002536	Q14982	OPCM_HUMAN	opioid binding protein/cell adhesion	69	Ig-like C2-type 1.				cell adhesion|neuron recognition	anchored to membrane|integral to plasma membrane	opioid receptor activity			ovary(2)|skin(1)	3	all_hematologic(175;0.019)	all_cancers(12;5.86e-24)|all_epithelial(12;2.65e-17)|all_lung(97;2.89e-05)|Lung NSC(97;6.16e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0269)|all_neural(223;0.0326)|Esophageal squamous(93;0.129)		all cancers(11;4.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.012)		CTGCGGTTTAGCCAGGCCACC	0.537													6	31					0	0	1	0	0
IGSF9B	22997	broad.mit.edu	37	11	133790988	133790988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:133790988G>A	uc001qgx.3	-	18	2863	c.2632C>T	c.(2632-2634)CCC>TCC	p.P878S		NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	878	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		TCGGCGAAGGGGAAGCCCTCG	0.657													5	59					0	0	1	0	0
IGSF9B	22997	broad.mit.edu	37	11	133807326	133807326	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:133807326G>A	uc001qgx.3	-	5	855	c.624C>T	c.(622-624)TGC>TGT	p.C208C	IGSF9B_uc001qgy.1_Silent_p.C50C	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	208	Ig-like 2.|Extracellular (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		TGTACGCTCGGCAGGTGTAGG	0.617													5	29					0	0	1	0	0
VPS26B	112936	broad.mit.edu	37	11	134114857	134114857	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:134114857C>T	uc001qhe.2	+	5	1203	c.747C>T	c.(745-747)TTC>TTT	p.F249F		NM_052875	NP_443107	Q4G0F5	VP26B_HUMAN	vacuolar protein sorting 26 homolog B	249					protein transport|vacuolar transport	cytosol|retromer complex					0	all_hematologic(175;0.127)	all_cancers(12;1.1e-21)|all_epithelial(12;3.77e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;2.43e-10)|all cancers(11;2.94e-09)|BRCA - Breast invasive adenocarcinoma(10;9.57e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00164)|Lung(977;0.216)		TCCGGCTCTTCCTGGCCGGGT	0.597											OREG0021548	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	52					0	0	1	0	0
ACAD8	27034	broad.mit.edu	37	11	134129563	134129563	+	Missense_Mutation	SNP	C	T	T	rs17849561		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr11:134129563C>T	uc001qhk.2	+	6	690	c.629C>T	c.(628-630)CCA>CTA	p.P210L	ACAD8_uc009zdc.2_3'UTR|ACAD8_uc010sco.1_Missense_Mutation_p.P112L|ACAD8_uc010scp.1_RNA|ACAD8_uc010scq.1_Missense_Mutation_p.P133L|ACAD8_uc001qhl.2_Missense_Mutation_p.P83L|ACAD8_uc010scr.1_Missense_Mutation_p.P172L|ACAD8_uc009zde.1_Missense_Mutation_p.P83L	NM_014384	NP_055199	Q9UKU7	ACAD8_HUMAN	acyl-Coenzyme A dehydrogenase family, member 8	210				P -> L (in Ref. 4; AAH01964).	branched chain family amino acid catabolic process|lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial matrix	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding				0	all_hematologic(175;0.127)	all_cancers(12;8e-23)|all_epithelial(12;2.59e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|all_neural(223;0.0189)|Medulloblastoma(222;0.0245)|Esophageal squamous(93;0.0559)		Epithelial(10;1.92e-10)|all cancers(11;2.26e-09)|BRCA - Breast invasive adenocarcinoma(10;8.73e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00154)|Lung(977;0.21)		ACAGGAGGACCAGGCCCCAAG	0.547													7	101					0	0	1	0	0
IQSEC3	440073	broad.mit.edu	37	12	266293	266293	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:266293G>A	uc001qhw.1	+	3	1353	c.1347G>A	c.(1345-1347)GAG>GAA	p.E449E	IQSEC3_uc001qhu.1_Silent_p.E449E	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	752	SEC7.				regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		AGAAGGTGGAGCGGCTCATTG	0.652													3	8					0	0	1	0	0
IQSEC3	440073	broad.mit.edu	37	12	266730	266730	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:266730G>A	uc001qhw.1	+	4	1410	c.1404G>A	c.(1402-1404)CAG>CAA	p.Q468Q	IQSEC3_uc001qhu.1_Silent_p.Q468Q	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	771	SEC7.				regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		AAGTGGTTCAGCAGTTCCACA	0.617													12	83					0	0	1	0	0
SLC6A12	6539	broad.mit.edu	37	12	301751	301751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:301751G>A	uc001qhz.2	-	16	2137	c.1594C>T	c.(1594-1596)CCG>TCG	p.P532S	SLC6A12_uc001qhx.2_Missense_Mutation_p.P189S|SLC6A12_uc001qhy.2_Missense_Mutation_p.P88S|SLC6A12_uc001qia.2_Missense_Mutation_p.P532S|SLC6A12_uc001qib.2_Missense_Mutation_p.P532S|SLC6A12_uc009zdh.1_Missense_Mutation_p.P532S	NM_003044	NP_003035	P48065	S6A12_HUMAN	solute carrier family 6 (neurotransmitter	532					cellular nitrogen compound metabolic process|neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(10;0.0172)|all_epithelial(11;0.0283)|all_lung(10;0.0392)|Lung NSC(10;0.0567)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00227)			CCCCAGGGCGGGTACACATAG	0.562													11	101					0	0	1	0	0
SLC6A13	6540	broad.mit.edu	37	12	351820	351820	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:351820G>A	uc001qic.1	-	4	491	c.438C>T	c.(436-438)ATC>ATT	p.I146I	SLC6A13_uc009zdj.1_Silent_p.I146I|SLC6A13_uc010sdl.1_Intron|SLC6A13_uc010sdm.1_Silent_p.I27I	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	146	Extracellular (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			AGGGCAGGTCGATGGTGAAGC	0.552													4	30					0	0	1	0	0
B4GALNT3	283358	broad.mit.edu	37	12	654586	654586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:654586G>A	uc001qii.1	+	6	590	c.590G>A	c.(589-591)AGC>AAC	p.S197N	B4GALNT3_uc001qij.1_Missense_Mutation_p.S99N	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	197	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			TTCTGGCTGAGCCTCGATGAC	0.602													8	35					0	0	1	0	0
B4GALNT3	283358	broad.mit.edu	37	12	661694	661694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:661694G>A	uc001qii.1	+	13	1270	c.1270G>A	c.(1270-1272)GGT>AGT	p.G424S	B4GALNT3_uc001qij.1_Missense_Mutation_p.A326T|B4GALNT3_uc001qik.1_5'Flank	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	424	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			GGAGCAGCCAGGTACAGAGTG	0.607													6	39					0	0	1	0	0
HSN2	378465	broad.mit.edu	37	12	978262	978262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:978262C>T	uc001qiq.2	+	1	1393	c.1267C>T	c.(1267-1269)CAT>TAT	p.H423Y	WNK1_uc001qio.3_Intron|WNK1_uc001qip.3_Intron|WNK1_uc001qir.3_Intron	NM_213655	NP_998820			hereditary sensory neuropathy, type II												0	all_cancers(10;0.0107)|all_epithelial(11;0.0151)|Ovarian(42;0.0512)|all_lung(10;0.0521)|Lung NSC(10;0.0987)		OV - Ovarian serous cystadenocarcinoma(31;0.000967)|BRCA - Breast invasive adenocarcinoma(9;0.0178)			ATCTGCACTTCATCCACAGGT	0.388													23	211					0	0	1	0	0
WNK1	65125	broad.mit.edu	37	12	1005638	1005638	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:1005638G>A	uc001qio.3	+	24	6492	c.5985G>A	c.(5983-5985)AAG>AAA	p.K1995K	WNK1_uc001qip.3_Silent_p.K1747K|WNK1_uc001qir.3_Silent_p.K1168K	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1995					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			TGATACCAAAGAAAGAGAAGC	0.468													12	62					0	0	1	0	0
DCP1B	196513	broad.mit.edu	37	12	2058478	2058478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:2058478G>A	uc001qjx.1	-	8	1627	c.1547C>T	c.(1546-1548)CCT>CTT	p.P516L	DCP1B_uc010sdy.1_Missense_Mutation_p.P414L	NM_152640	NP_689853	Q8IZD4	DCP1B_HUMAN	decapping enzyme Dcp1b	516					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|nucleus	hydrolase activity|protein binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00193)			TGCTGTAGCAGGGATGCGCTG	0.597													7	40					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2693715	2693715	+	Silent	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:2693715T>A	uc009zdu.1	+	16	2584	c.2271T>A	c.(2269-2271)GCT>GCA	p.A757A	CACNA1C_uc009zdv.1_Silent_p.A754A|CACNA1C_uc001qkb.2_Silent_p.A757A|CACNA1C_uc001qkc.2_Silent_p.A757A|CACNA1C_uc001qke.2_Silent_p.A757A|CACNA1C_uc001qkf.2_Silent_p.A757A|CACNA1C_uc001qjz.2_Silent_p.A757A|CACNA1C_uc001qkd.2_Silent_p.A757A|CACNA1C_uc001qkg.2_Silent_p.A757A|CACNA1C_uc009zdw.1_Silent_p.A757A|CACNA1C_uc001qkh.2_Silent_p.A757A|CACNA1C_uc001qkl.2_Silent_p.A757A|CACNA1C_uc001qkn.2_Silent_p.A757A|CACNA1C_uc001qko.2_Silent_p.A757A|CACNA1C_uc001qkp.2_Silent_p.A757A|CACNA1C_uc001qkr.2_Silent_p.A757A|CACNA1C_uc001qku.2_Silent_p.A757A|CACNA1C_uc001qkq.2_Silent_p.A757A|CACNA1C_uc001qks.2_Silent_p.A757A|CACNA1C_uc001qkt.2_Silent_p.A757A|CACNA1C_uc001qka.1_Silent_p.A292A|CACNA1C_uc001qki.1_Silent_p.A493A|CACNA1C_uc001qkj.1_Silent_p.A493A|CACNA1C_uc001qkk.1_Silent_p.A493A|CACNA1C_uc001qkm.1_Silent_p.A493A|CACNA1C_uc001qkw.2_Silent_p.A46A	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	757	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	ACAACCTGGCTGATGCTGAGA	0.433													4	47					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2705123	2705123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:2705123C>T	uc009zdu.1	+	20	3060	c.2747C>T	c.(2746-2748)TCC>TTC	p.S916F	CACNA1C_uc009zdv.1_Missense_Mutation_p.S913F|CACNA1C_uc001qkb.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkc.2_Missense_Mutation_p.S916F|CACNA1C_uc001qke.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkf.2_Missense_Mutation_p.S916F|CACNA1C_uc001qjz.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkd.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkg.2_Missense_Mutation_p.S916F|CACNA1C_uc009zdw.1_Missense_Mutation_p.S916F|CACNA1C_uc001qkh.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkl.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkn.2_Missense_Mutation_p.S916F|CACNA1C_uc001qko.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkp.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkr.2_Missense_Mutation_p.S916F|CACNA1C_uc001qku.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkq.2_Missense_Mutation_p.S916F|CACNA1C_uc001qks.2_Missense_Mutation_p.S916F|CACNA1C_uc001qkt.2_Missense_Mutation_p.S916F|CACNA1C_uc001qka.1_Missense_Mutation_p.S451F|CACNA1C_uc001qki.1_Missense_Mutation_p.S652F|CACNA1C_uc001qkj.1_Missense_Mutation_p.S652F|CACNA1C_uc001qkk.1_Missense_Mutation_p.S652F|CACNA1C_uc001qkm.1_Missense_Mutation_p.S652F|CACNA1C_uc001qkw.2_Missense_Mutation_p.S205F	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	916	Helical; Name=S1 of repeat III; (Potential).|III.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	AGCAGCATTTCCCTGGCTGCT	0.582													5	38					0	0	1	0	0
FOXM1	2305	broad.mit.edu	37	12	2968072	2968072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:2968072C>T	uc001qlf.2	-	9	2289	c.2024G>A	c.(2023-2025)AGG>AAG	p.R675K	uc001qld.2_Intron|FOXM1_uc001qle.2_Missense_Mutation_p.R713K|FOXM1_uc001qlg.2_Missense_Mutation_p.R660K|FOXM1_uc009zea.2_Missense_Mutation_p.R660K|FOXM1_uc009zeb.2_Missense_Mutation_p.R659K	NM_021953	NP_068772	Q08050	FOXM1_HUMAN	forkhead box M1 isoform 2	675					cell cycle|embryo development|liver development|negative regulation of cell aging|negative regulation of stress-activated MAPK cascade|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|positive regulation of cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of cell growth|regulation of cell proliferation|regulation of oxygen and reactive oxygen species metabolic process|regulation of Ras protein signal transduction|regulation of reactive oxygen species metabolic process|regulation of sequence-specific DNA binding transcription factor activity|tissue development|transcription from RNA polymerase II promoter|vasculogenesis	cytoplasm|transcription factor complex	DNA bending activity|DNA binding|DNA binding|double-stranded DNA binding|promoter binding|protein binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|transcription factor binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.000622)			ACTGAGGAGCCTTTGCGGTGA	0.602													5	58					0	0	1	0	0
FOXM1	2305	broad.mit.edu	37	12	2983289	2983289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:2983289G>A	uc001qlf.2	-	2	621	c.356C>T	c.(355-357)CCA>CTA	p.P119L	FOXM1_uc001qle.2_Missense_Mutation_p.P119L|FOXM1_uc001qlg.2_Missense_Mutation_p.P119L|FOXM1_uc009zea.2_Missense_Mutation_p.P119L|FOXM1_uc009zeb.2_Missense_Mutation_p.P119L	NM_021953	NP_068772	Q08050	FOXM1_HUMAN	forkhead box M1 isoform 2	119					cell cycle|embryo development|liver development|negative regulation of cell aging|negative regulation of stress-activated MAPK cascade|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|positive regulation of cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of cell growth|regulation of cell proliferation|regulation of oxygen and reactive oxygen species metabolic process|regulation of Ras protein signal transduction|regulation of reactive oxygen species metabolic process|regulation of sequence-specific DNA binding transcription factor activity|tissue development|transcription from RNA polymerase II promoter|vasculogenesis	cytoplasm|transcription factor complex	DNA bending activity|DNA binding|DNA binding|double-stranded DNA binding|promoter binding|protein binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|transcription factor binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.000622)			CCGGAGTCCTGGAGGCTGAGT	0.537													7	123					0	0	1	0	0
FOXM1	2305	broad.mit.edu	37	12	2983392	2983392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:2983392G>A	uc001qlf.2	-	2	518	c.253C>T	c.(253-255)CAC>TAC	p.H85Y	TULP3_uc010sef.1_5'Flank|FOXM1_uc001qle.2_Missense_Mutation_p.H85Y|FOXM1_uc001qlg.2_Missense_Mutation_p.H85Y|FOXM1_uc009zea.2_Missense_Mutation_p.H85Y|FOXM1_uc009zeb.2_Missense_Mutation_p.H85Y|C12orf32_uc001qlh.2_5'Flank|C12orf32_uc010see.1_5'Flank|C12orf32_uc001qli.2_5'Flank	NM_021953	NP_068772	Q08050	FOXM1_HUMAN	forkhead box M1 isoform 2	85					cell cycle|embryo development|liver development|negative regulation of cell aging|negative regulation of stress-activated MAPK cascade|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|positive regulation of cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of cell growth|regulation of cell proliferation|regulation of oxygen and reactive oxygen species metabolic process|regulation of Ras protein signal transduction|regulation of reactive oxygen species metabolic process|regulation of sequence-specific DNA binding transcription factor activity|tissue development|transcription from RNA polymerase II promoter|vasculogenesis	cytoplasm|transcription factor complex	DNA bending activity|DNA binding|DNA binding|double-stranded DNA binding|promoter binding|protein binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|transcription factor binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.000622)			ATGATGCTGTGAATATTAGCA	0.512													7	88					0	0	1	0	0
PRMT8	56341	broad.mit.edu	37	12	3677988	3677988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:3677988G>A	uc001qmf.2	+	5	965	c.598G>A	c.(598-600)GTG>ATG	p.V200M	PRMT8_uc009zed.2_Missense_Mutation_p.V191M|PRMT8_uc009zee.1_RNA|PRMT8_uc001qmg.2_Missense_Mutation_p.V14M	NM_019854	NP_062828	Q9NR22	ANM8_HUMAN	HMT1 hnRNP methyltransferase-like 4	200					regulation of protein binding	cytoplasm|plasma membrane	histone-arginine N-methyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein-arginine omega-N asymmetric methyltransferase activity|protein-arginine omega-N monomethyltransferase activity			ovary(3)|central_nervous_system(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(31;0.0109)|COAD - Colon adenocarcinoma(12;0.0264)			GCTCAACACGGTGATCTTTGC	0.577													9	69					0	0	1	0	0
FGF23	8074	broad.mit.edu	37	12	4479941	4479941	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:4479941G>A	uc001qmq.1	-	3	470	c.324C>T	c.(322-324)TTC>TTT	p.F108F		NM_020638	NP_065689	Q9GZV9	FGF23_HUMAN	fibroblast growth factor 23 precursor	108					cell differentiation|insulin receptor signaling pathway|negative regulation of bone mineralization|negative regulation of hormone secretion|negative regulation of osteoblast differentiation|positive regulation of vitamin D 24-hydroxylase activity|regulation of phosphate transport|vitamin D catabolic process	extracellular space	growth factor activity	p.F108F(1)		ovary(2)|breast(1)|skin(1)	4			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)|STAD - Stomach adenocarcinoma(119;0.206)			TCTCCGGGTCGAAATAGTGCT	0.617													12	69					0	0	1	0	0
KCNA6	3742	broad.mit.edu	37	12	4919811	4919811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:4919811G>A	uc001qng.2	+	1	1470	c.604G>A	c.(604-606)GAT>AAT	p.D202N		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	202						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						GTTCCGTGTAGATGGTCGAGG	0.547										HNSCC(72;0.22)			6	39					0	0	1	0	0
KCNA6	3742	broad.mit.edu	37	12	4920420	4920420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:4920420C>T	uc001qng.2	+	1	2079	c.1213C>T	c.(1213-1215)CTT>TTT	p.L405F		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	405						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						TGACGATTCGCTTTTTCCCAG	0.562										HNSCC(72;0.22)			6	90					0	0	1	0	0
KCNA1	3736	broad.mit.edu	37	12	5020952	5020952	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:5020952C>T	uc001qnh.2	+	2	1513	c.408C>T	c.(406-408)TTC>TTT	p.F136F		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	136					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	ACGAGGGCTTCATCAAGGAGG	0.637													10	51					0	0	1	0	0
KCNA1	3736	broad.mit.edu	37	12	5021210	5021210	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:5021210C>T	uc001qnh.2	+	2	1771	c.666C>T	c.(664-666)TTC>TTT	p.F222F		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	222	Helical; Name=Segment S2; (Potential).				synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	ACCCCTTCTTCATCGTGGAAA	0.527													6	38					0	0	1	0	0
KCNA5	3741	broad.mit.edu	37	12	5154030	5154030	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:5154030C>T	uc001qni.2	+	1	946	c.717C>T	c.(715-717)ATC>ATT	p.I239I		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	239						Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						TGTGGCTTATCTTCGAGTATC	0.602													12	104					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5672726	5672726	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:5672726C>T	uc001qnm.2	-	26	2808	c.2736G>A	c.(2734-2736)GTG>GTA	p.V912V		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	917	Helical; (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TCAGGAACATCACGAGGTTCT	0.458													8	79					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5841745	5841745	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:5841745C>T	uc001qnm.2	-	15	1558	c.1486G>A	c.(1486-1488)GAG>AAG	p.E496K		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	501	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TGGTTGCTCTCCTTTAGCATT	0.453													5	31					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	6030346	6030346	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:6030346C>T	uc001qnm.2	-	3	454	c.382G>A	c.(382-384)GGC>AGC	p.G128S		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	132	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GGCTCCTTGCCTGTCTCCCCA	0.617													5	21					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6076747	6076747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:6076747C>T	uc001qnn.1	-	47	8042	c.7792G>A	c.(7792-7794)GAT>AAT	p.D2598N	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2598	VWFC 3.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GTGCACACATCGATCATCACA	0.622													16	115					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6103305	6103305	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:6103305C>T	uc001qnn.1	-	37	6571	c.6321G>A	c.(6319-6321)TGG>TGA	p.W2107*	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2107	VWFD 4.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CAAGTGTTTTCCAGTCTGTGG	0.522													5	50					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6127746	6127746	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:6127746G>A	uc001qnn.1	-	28	5088	c.4838C>T	c.(4837-4839)TCT>TTT	p.S1613F	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1613	VWFA 2.		S -> P (in VWD2).		blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GATCTCATCAGAGGCAGGATT	0.502													13	57					0	0	1	0	0
NOP2	4839	broad.mit.edu	37	12	6666365	6666365	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:6666365G>A	uc001qph.1	-	16	2401	c.2221C>T	c.(2221-2223)CAT>TAT	p.H741Y	IFFO1_uc001qpe.1_5'Flank|IFFO1_uc010sfe.1_5'Flank|IFFO1_uc001qpf.1_5'Flank|IFFO1_uc001qpc.1_5'Flank|IFFO1_uc001qpd.1_5'Flank|NOP2_uc009zeq.1_3'UTR|NOP2_uc001qpi.1_Missense_Mutation_p.H741Y|NOP2_uc001qpj.1_Missense_Mutation_p.H170Y	NM_001033714	NP_001028886	P46087	NOP2_HUMAN	nucleolar protein 1, 120kDa	745					positive regulation of cell proliferation|rRNA processing	nucleolus	protein binding|RNA binding|S-adenosylmethionine-dependent methyltransferase activity			ovary(2)	2						GGCTGATGATGGTCCTTAGGT	0.547													26	238					0	0	1	0	0
CHD4	1108	broad.mit.edu	37	12	6692060	6692060	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:6692060T>A	uc001qpo.2	-	28	4354	c.4190A>T	c.(4189-4191)GAT>GTT	p.D1397V	CHD4_uc001qpn.2_Missense_Mutation_p.D1390V|CHD4_uc001qpp.2_Missense_Mutation_p.D1422V|uc001qpq.1_Missense_Mutation_p.I88N|SCARNA11_uc001qpr.1_5'Flank	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1397					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						CAATGGCTTATCTTTATCATT	0.458													14	109					0	0	1	0	0
CHD4	1108	broad.mit.edu	37	12	6702615	6702615	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:6702615G>A	uc001qpo.2	-	16	2645	c.2481C>T	c.(2479-2481)GCC>GCT	p.A827A	CHD4_uc001qpn.2_Silent_p.A820A|CHD4_uc001qpp.2_Silent_p.A824A	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	827	Helicase ATP-binding.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						CACCACGAATGGCATTGTCTT	0.507													13	107					0	0	1	0	0
ACRBP	84519	broad.mit.edu	37	12	6749307	6749307	+	Silent	SNP	C	T	T	rs146172116		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:6749307C>T	uc001qpu.1	-	8	1392	c.1344G>A	c.(1342-1344)ACG>ACA	p.T448T	LPAR5_uc010sff.1_5'Flank|ACRBP_uc001qpt.1_5'Flank|ACRBP_uc010sfg.1_Silent_p.T415T	NM_032489	NP_115878	Q8NEB7	ACRBP_HUMAN	proacrosin binding protein sp32 precursor	448						acrosomal vesicle|extracellular region				central_nervous_system(1)	1						CACAGCCTTTCGTGGCAAGCC	0.562													4	47					0	0	1	0	0
GPR162	27239	broad.mit.edu	37	12	6935375	6935375	+	Missense_Mutation	SNP	G	A	A	rs138546589		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:6935375G>A	uc001qqw.1	+	4	1607	c.1072G>A	c.(1072-1074)GAC>AAC	p.D358N	LEPREL2_uc001qqz.1_5'Flank|LEPREL2_uc001qra.1_5'Flank|LEPREL2_uc001qrb.1_5'Flank|GPR162_uc001qqx.1_Missense_Mutation_p.D74N|GPR162_uc009zfd.1_Missense_Mutation_p.D54N|GPR162_uc001qqy.1_Missense_Mutation_p.D54N	NM_019858	NP_062832	Q16538	GP162_HUMAN	G protein-coupled receptor 162 isoform 2	358	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGGCTGTGACGACTATGCAGA	0.592											OREG0021636	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	55					0	0	1	0	0
LEPREL2	10536	broad.mit.edu	37	12	6939120	6939120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:6939120G>A	uc001qra.1	+	4	630	c.596G>A	c.(595-597)CGA>CAA	p.R199Q	LEPREL2_uc001qqz.1_Missense_Mutation_p.R6Q|LEPREL2_uc001qrb.1_Missense_Mutation_p.R6Q|GPR162_uc001qqy.1_Missense_Mutation_p.R134Q	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	199					negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	AAGTACAGACGAATGTCGGGA	0.592													5	74					0	0	1	0	0
USP5	8078	broad.mit.edu	37	12	6973921	6973921	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:6973921C>T	uc001qri.3	+	18	2339	c.2280C>T	c.(2278-2280)TTC>TTT	p.F760F	USP5_uc001qrh.3_Silent_p.F737F|TPI1_uc001qrk.2_5'Flank	NM_001098536	NP_001092006	P45974	UBP5_HUMAN	ubiquitin specific peptidase 5 isoform 1	760	UBA 2.				positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process	lysosome	cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			lung(2)|breast(1)|skin(1)	4						ACTGGATCTTCAGTCACATTG	0.418													6	59					0	0	1	0	0
ENO2	2026	broad.mit.edu	37	12	7026767	7026767	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:7026767C>T	uc001qru.1	+	6	555	c.333C>T	c.(331-333)ATC>ATT	p.I111I	ENO2_uc009zfi.1_Silent_p.I111I|ENO2_uc010sfq.1_Silent_p.I68I|ENO2_uc001qrv.1_Silent_p.I111I	NM_001975	NP_001966	P09104	ENOG_HUMAN	enolase 2	111					gluconeogenesis|glycolysis	phosphopyruvate hydratase complex|plasma membrane	magnesium ion binding|phosphopyruvate hydratase activity				0						CCAATGCCATCCTGGGTGTGT	0.572													19	94					0	0	1	0	0
C1S	716	broad.mit.edu	37	12	7171637	7171637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:7171637G>A	uc001qsj.2	+	8	1177	c.458G>A	c.(457-459)GGT>GAT	p.G153D	C1S_uc001qsk.2_Missense_Mutation_p.G153D|C1S_uc001qsl.2_Missense_Mutation_p.G153D|C1S_uc009zfr.2_5'UTR|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	153	EGF-like; calcium-binding.	Calcium; via carbonyl oxygen.			complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	TTCATTGGTGGTTACTTCTGC	0.448													5	92					0	0	1	0	0
C1S	716	broad.mit.edu	37	12	7172518	7172518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:7172518G>A	uc001qsj.2	+	9	1351	c.632G>A	c.(631-633)GGG>GAG	p.G211E	C1S_uc001qsk.2_Missense_Mutation_p.G211E|C1S_uc001qsl.2_Missense_Mutation_p.G211E|C1S_uc009zfr.2_Missense_Mutation_p.G44E|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	211	CUB 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	TTGGAGAAAGGGTTCCAAGTG	0.478													15	109					0	0	1	0	0
C1S	716	broad.mit.edu	37	12	7177809	7177809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:7177809C>T	uc001qsj.2	+	15	2640	c.1921C>T	c.(1921-1923)CCC>TCC	p.P641S	C1S_uc001qsk.2_Missense_Mutation_p.P641S|C1S_uc001qsl.2_Missense_Mutation_p.P641S|C1S_uc009zfr.2_Missense_Mutation_p.P474S|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	641	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	TGTACAGGATCCCAATGACAA	0.532													20	113					0	0	1	0	0
CLSTN3	9746	broad.mit.edu	37	12	7288023	7288023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:7288023C>T	uc001qsr.2	+	4	762	c.484C>T	c.(484-486)CGC>TGC	p.R162C	CLSTN3_uc001qss.2_Missense_Mutation_p.R174C	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	162	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						GCTGTACGATCGCATCCTGCG	0.562													6	64					0	0	1	0	0
CLSTN3	9746	broad.mit.edu	37	12	7289618	7289618	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:7289618C>T	uc001qsr.2	+	7	1400	c.1122C>T	c.(1120-1122)TTC>TTT	p.F374F	CLSTN3_uc001qss.2_Silent_p.F386F	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	374	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						GTGACCACTTCACCCTGTCCT	0.592													6	53					0	0	1	0	0
GDF3	9573	broad.mit.edu	37	12	7843026	7843026	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:7843026G>A	uc001qte.2	-	2	579	c.543C>T	c.(541-543)TTC>TTT	p.F181F		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	181					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity			skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						CCAGCAGGTTGAAGTGAACAG	0.507													11	116					0	0	1	0	0
GDF3	9573	broad.mit.edu	37	12	7843217	7843217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:7843217C>T	uc001qte.2	-	2	388	c.352G>A	c.(352-354)GAA>AAA	p.E118K		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	118					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity			skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						TGTTCCCTTTCTTTGATGGCA	0.488													9	89					0	0	1	0	0
SLC2A3	6515	broad.mit.edu	37	12	8083865	8083865	+	Silent	SNP	G	A	A	rs150412980		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:8083865G>A	uc001qtr.2	-	4	748	c.486C>T	c.(484-486)ATC>ATT	p.I162I	SLC2A3_uc001qts.2_Silent_p.I162I	NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	162	Helical; Name=5; (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		TTCCAACAACGATGCCCAGCT	0.438													5	52					0	0	1	0	0
FOXJ2	55810	broad.mit.edu	37	12	8192670	8192670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:8192670C>T	uc001qtu.2	+	2	1327	c.242C>T	c.(241-243)TCC>TTC	p.S81F	FOXJ2_uc001qtt.1_Missense_Mutation_p.S81F	NM_018416	NP_060886	Q9P0K8	FOXJ2_HUMAN	forkhead box J2	81	Fork-head.				embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	nucleolus|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				Kidney(36;0.0944)		GCCATCAACTCCTCTCCAGCC	0.517													8	63					0	0	1	0	0
FOXJ2	55810	broad.mit.edu	37	12	8196301	8196301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:8196301C>T	uc001qtu.2	+	4	1498	c.413C>T	c.(412-414)TCC>TTC	p.S138F	FOXJ2_uc001qtt.1_Missense_Mutation_p.S138F	NM_018416	NP_060886	Q9P0K8	FOXJ2_HUMAN	forkhead box J2	138	Fork-head.				embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	nucleolus|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				Kidney(36;0.0944)		TTCCAGGGTTCCTATTGGACA	0.443													18	159					0	0	1	0	0
ZNF705A	440077	broad.mit.edu	37	12	8329814	8329814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:8329814G>A	uc001qud.1	+	5	610	c.538G>A	c.(538-540)GCC>ACC	p.A180T	FAM66C_uc001que.3_5'Flank|FAM66C_uc001quf.3_5'Flank|FAM66C_uc009zgc.2_5'Flank|FAM66C_uc001qug.3_5'Flank	NM_001004328	NP_001004328	Q6ZN79	Z705A_HUMAN	zinc finger protein 705A	180	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				Kidney(36;0.0877)		ATGTGAAAAGGCCTATACTAA	0.388													8	110					0	0	1	0	0
CLEC4E	26253	broad.mit.edu	37	12	8687390	8687390	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:8687390C>T	uc001quo.1	-	6	669	c.504G>A	c.(502-504)GGG>GGA	p.G168G		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	168	C-type lectin.|Extracellular (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					TGTTGGGCTCCCCTACATCCC	0.368													7	56					0	0	1	0	0
CLEC4E	26253	broad.mit.edu	37	12	8691854	8691854	+	Missense_Mutation	SNP	G	A	A	rs137962363		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:8691854G>A	uc001quo.1	-	3	344	c.179C>T	c.(178-180)CCT>CTT	p.P60L		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	60	Extracellular (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					GAAATTCTCAGGTAGCTGAAA	0.358													11	123					0	0	1	0	0
A2ML1	144568	broad.mit.edu	37	12	8976448	8976448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:8976448G>A	uc001quz.3	+	3	477	c.379G>A	c.(379-381)GAC>AAC	p.D127N		NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	Error:Variant_position_missing_in_B3KVV6_after_alignment						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						TGTACAGACTGACAAACCTCT	0.507													7	84					0	0	1	0	0
A2ML1	144568	broad.mit.edu	37	12	8995744	8995744	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:8995744G>A	uc001quz.3	+	12	1361	c.1263G>A	c.(1261-1263)ATG>ATA	p.M421I	A2ML1_uc001qva.1_Missense_Mutation_p.M1I|A2ML1_uc010sgm.1_5'Flank	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	265						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						AGTTTCAAATGGAAGACTTAG	0.453													5	68					0	0	1	0	0
A2ML1	144568	broad.mit.edu	37	12	8998712	8998712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:8998712C>T	uc001quz.3	+	14	1675	c.1577C>T	c.(1576-1578)TCG>TTG	p.S526L	A2ML1_uc001qva.1_Missense_Mutation_p.S106L|A2ML1_uc010sgm.1_Missense_Mutation_p.S26L	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	370						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						ACCTTCACTTCGAGACTGGCC	0.478													6	94					0	0	1	0	0
KLRG1	10219	broad.mit.edu	37	12	9147804	9147804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:9147804G>A	uc001qvh.2	+	3	288	c.277G>A	c.(277-279)GAA>AAA	p.E93K	KLRG1_uc001qvg.2_Missense_Mutation_p.E93K	NM_005810	NP_005801	Q96E93	KLRG1_HUMAN	killer cell lectin-like receptor subfamily G,	93	C-type lectin.|Extracellular (Potential).				cell surface receptor linked signaling pathway|cellular defense response|inflammatory response|regulation of immune response	integral to membrane	receptor activity|sugar binding			central_nervous_system(1)	1						CTCAGTGGAGGAAAAGGACTG	0.448													4	9					0	0	1	0	0
A2M	2	broad.mit.edu	37	12	9248242	9248242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:9248242C>T	uc001qvk.1	-	16	2019	c.1906G>A	c.(1906-1908)GAC>AAC	p.D636N	A2M_uc009zgk.1_Missense_Mutation_p.D486N	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	636					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	TTGTCCTGGTCATTCAAAGGC	0.378													7	77					0	0	1	0	0
PZP	5858	broad.mit.edu	37	12	9317791	9317791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:9317791C>T	uc001qvl.2	-	19	2460	c.2431G>A	c.(2431-2433)GGA>AGA	p.G811R	PZP_uc009zgl.2_Missense_Mutation_p.G680R|PZP_uc010sgo.1_RNA|PZP_uc009zgm.1_Missense_Mutation_p.G143R	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						AAGACCTCTCCACGAATCACA	0.512													5	69					0	0	1	0	0
PZP	5858	broad.mit.edu	37	12	9333681	9333681	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:9333681G>A	uc001qvl.2	-	15	1766	c.1737C>T	c.(1735-1737)GCC>GCT	p.A579A	PZP_uc009zgl.2_Silent_p.A448A	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						CTTGCAGGTGGGCATGTGAGG	0.547													4	21					0	0	1	0	0
C12orf59	120939	broad.mit.edu	37	12	10332194	10332194	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:10332194C>T	uc001qxr.2	+	1	638	c.21C>T	c.(19-21)GTC>GTT	p.V7V	C12orf59_uc001qxq.2_Missense_Mutation_p.S2L			Q4KMG9	CL059_HUMAN	RecName: Full=Uncharacterized protein C12orf59; Flags: Precursor;	7						integral to membrane				ovary(1)	1						GAGTTCATGTCGTGGCGGCCT	0.478													11	127					0	0	1	0	0
STYK1	55359	broad.mit.edu	37	12	10774545	10774545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:10774545G>A	uc001qys.2	-	10	1515	c.994C>T	c.(994-996)CCT>TCT	p.P332S		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	332	Protein kinase.					integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						ATGCTGGTAGGAGGGACTTCA	0.418										HNSCC(73;0.22)			9	84					0	0	1	0	0
PRB3	5544	broad.mit.edu	37	12	11421019	11421019	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:11421019C>T	uc001qzs.2	-	3	202	c.164G>A	c.(163-165)GGA>GAA	p.G55E	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	55	1.|10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|Pro-rich.					extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			TTCTGGCTTTCCTGGAGGAGG	0.597													11	170					0	0	1	0	0
PRB4	5545	broad.mit.edu	37	12	11461501	11461501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:11461501C>T	uc001qzf.1	-	3	450	c.416G>A	c.(415-417)GGA>GAA	p.G139E	PRB4_uc001qzt.2_Missense_Mutation_p.G139E	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	202	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|8.					extracellular region				ovary(1)	1						TTCTGGCTTTCCTGGAGGAGG	0.602										HNSCC(22;0.051)			18	158					0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11546281	11546281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:11546281C>T	uc010shk.1	-	3	766	c.731G>A	c.(730-732)GGA>GAA	p.G244E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGGGGTGGTCCTTGTGGCTT	0.602													16	182					0	0	1	0	0
ETV6	2120	broad.mit.edu	37	12	11992146	11992146	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:11992146T>C	uc001qzz.2	+	3	510	c.236T>C	c.(235-237)TTA>TCA	p.L79S		NM_001987	NP_001978	P41212	ETV6_HUMAN	ets variant 6	79	PNT.					cytoplasm|nucleolus	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		ETV6/NTRK3(234)|ETV6/JAK2(11)	soft_tissue(85)|kidney(66)|breast(55)|salivary_gland(26)|haematopoietic_and_lymphoid_tissue(13)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)|pancreas(1)	250		all_cancers(2;1.88e-12)|Acute lymphoblastic leukemia(2;6.91e-39)|all_hematologic(2;2.7e-36)				GAGTTTTCTTTAAGGCCAATT	0.483			T	NTRK3|RUNX1|PDGFRB|ABL1|MN1|ABL2|FACL6|CHIC2|ARNT|JAK2|EVI1|CDX2|STL|HLXB9|MDS2|PER1|SYK|TTL|FGFR3|PAX5	congenital fibrosarcoma|multiple leukemia and lymphoma| secretory breast|MDS|ALL								13	32					0	0	1	0	0
ETV6	2120	broad.mit.edu	37	12	12022498	12022498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:12022498C>T	uc001qzz.2	+	5	878	c.604C>T	c.(604-606)CGG>TGG	p.R202W	ETV6_uc001raa.1_5'UTR	NM_001987	NP_001978	P41212	ETV6_HUMAN	ets variant 6	202						cytoplasm|nucleolus	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		ETV6/NTRK3(234)|ETV6/JAK2(11)	soft_tissue(85)|kidney(66)|breast(55)|salivary_gland(26)|haematopoietic_and_lymphoid_tissue(13)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)|pancreas(1)	250		all_cancers(2;1.88e-12)|Acute lymphoblastic leukemia(2;6.91e-39)|all_hematologic(2;2.7e-36)				GCGGCCCCTCCGGTCCCCCCT	0.632			T	NTRK3|RUNX1|PDGFRB|ABL1|MN1|ABL2|FACL6|CHIC2|ARNT|JAK2|EVI1|CDX2|STL|HLXB9|MDS2|PER1|SYK|TTL|FGFR3|PAX5	congenital fibrosarcoma|multiple leukemia and lymphoma| secretory breast|MDS|ALL								9	154					0	0	1	0	0
LRP6	4040	broad.mit.edu	37	12	12284868	12284868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:12284868G>A	uc001rah.3	-	18	3999	c.3857C>T	c.(3856-3858)CCT>CTT	p.P1286L	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Intron	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	1286	Extracellular (Potential).|LDL-receptor class A 1.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				TGAGCATACAGGACAATTGAG	0.498													22	266					0	0	1	0	0
MANSC1	54682	broad.mit.edu	37	12	12483499	12483499	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:12483499G>A	uc001rai.1	-	4	1016	c.758C>T	c.(757-759)TCA>TTA	p.S253L	MANSC1_uc010shm.1_Missense_Mutation_p.S187L|MANSC1_uc001raj.1_Missense_Mutation_p.S219L|MANSC1_uc009zht.1_Missense_Mutation_p.S172L	NM_018050	NP_060520	Q9H8J5	MANS1_HUMAN	MANSC domain containing 1 precursor	253	Thr-rich.|Extracellular (Potential).					integral to membrane					0		Prostate(47;0.0865)		BRCA - Breast invasive adenocarcinoma(232;0.185)		AGGTGTCACTGAAGCATTGGT	0.567													5	45					0	0	1	0	0
RPL13AP20	387841	broad.mit.edu	37	12	13028607	13028607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:13028607C>T	uc010sho.1	+	1	197	c.175C>T	c.(175-177)CGC>TGC	p.R59C		NR_003932				SubName: Full=Ribosomal protein L13a variant; Flags: Fragment;												0						GGCTTTCCTCCGCAAGCGGAT	0.572													3	15					0	0	1	0	0
KIAA1467	57613	broad.mit.edu	37	12	13208816	13208816	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:13208816C>T	uc001rbi.2	+	2	392	c.369C>T	c.(367-369)TTC>TTT	p.F123F	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	123	Helical; (Potential).					integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		TGTGTGCTTTCCTGATCCCCT	0.577													4	36					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716487	13716487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:13716487C>T	uc001rbt.2	-	13	3864	c.3685G>A	c.(3685-3687)GTG>ATG	p.V1229M		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1229	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGACCCGTCACCGTCGTGGAG	0.602													5	55					0	0	1	0	0
PTPRO	5800	broad.mit.edu	37	12	15654909	15654909	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:15654909C>T	uc001rcv.1	+	5	1191	c.1017C>T	c.(1015-1017)TCC>TCT	p.S339S	PTPRO_uc001rcw.1_Silent_p.S339S|PTPRO_uc001rcu.1_Silent_p.S339S	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	339	Fibronectin type-III 4.|Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				GCTCTTTCTCCTTTTTCCCTG	0.428													3	8					0	0	1	0	0
PTPRO	5800	broad.mit.edu	37	12	15673171	15673171	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:15673171T>G	uc001rcv.1	+	10	1990	c.1816T>G	c.(1816-1818)TTC>GTC	p.F606V	PTPRO_uc001rcw.1_Missense_Mutation_p.F606V	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	606	Fibronectin type-III 6.|Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				GTACTACAACTTCCGGGTTAC	0.468													5	60					0	0	1	0	0
PLCZ1	89869	broad.mit.edu	37	12	18858169	18858169	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:18858169C>T	uc010sid.1	-	7	986	c.795G>A	c.(793-795)CAG>CAA	p.Q265Q	PLCZ1_uc001rdv.3_Silent_p.Q161Q|PLCZ1_uc001rdw.3_Silent_p.Q6Q|PLCZ1_uc001rdu.1_Silent_p.Q6Q|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	265	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					CAAAAGTAGCCTGCAAATTGT	0.398													5	44					0	0	1	0	0
PLEKHA5	54477	broad.mit.edu	37	12	19436542	19436542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:19436542C>T	uc001reb.2	+	11	1710	c.1624C>T	c.(1624-1626)CCC>TCC	p.P542S	PLEKHA5_uc010sie.1_Missense_Mutation_p.P548S|PLEKHA5_uc001rea.2_Missense_Mutation_p.P542S|PLEKHA5_uc009zin.2_Missense_Mutation_p.P300S|PLEKHA5_uc010sif.1_Missense_Mutation_p.P434S|PLEKHA5_uc010sig.1_Missense_Mutation_p.P434S|PLEKHA5_uc010sih.1_Missense_Mutation_p.P434S|PLEKHA5_uc001rec.1_Missense_Mutation_p.P230S	NM_019012	NP_061885	Q9HAU0	PKHA5_HUMAN	pleckstrin homology domain containing, family A	542							1-phosphatidylinositol binding|protein binding			ovary(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.00804)					GCACTCTATTCCCACATCACC	0.458													10	115					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21028227	21028227	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:21028227C>T	uc001rek.2	+	8	912	c.786C>T	c.(784-786)TTC>TTT	p.F262F	SLCO1B3_uc001rel.2_Silent_p.F262F|SLCO1B3_uc010sil.1_Silent_p.F262F|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Silent_p.F87F	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	262	Helical; Name=6; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					GGCTTGGTTTCCTTGTGTCTG	0.363													5	62					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21028325	21028325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:21028325C>T	uc001rek.2	+	8	1010	c.884C>T	c.(883-885)TCA>TTA	p.S295L	SLCO1B3_uc001rel.2_Missense_Mutation_p.S295L|SLCO1B3_uc010sil.1_Missense_Mutation_p.S295L|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.S120L	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	295	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					ATTTCACTATCATTGCATGTG	0.313													5	14					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21030819	21030819	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:21030819T>C	uc001rek.2	+	9	1210	c.1084T>C	c.(1084-1086)TAT>CAT	p.Y362H	SLCO1B3_uc001rel.2_Missense_Mutation_p.Y362H|SLCO1B3_uc010sil.1_Missense_Mutation_p.Y362H|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.Y187H	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	362	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					CGTCTTTAAATATATGGAGCA	0.348													6	16					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21036459	21036459	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:21036459C>T	uc001rek.2	+	12	1731	c.1605C>T	c.(1603-1605)TTC>TTT	p.F535F	SLCO1B3_uc001rel.2_Silent_p.F535F|SLCO1B3_uc010sil.1_Silent_p.F535F|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Silent_p.F360F	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	535	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					GGAAATTTTTCATCTATGTTG	0.368													4	28					0	0	1	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21172237	21172237	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:21172237G>A	uc010sin.1	+	2	141	c.141G>A	c.(139-141)CCG>CCA	p.P47P	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Intron	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	47						membrane	transporter activity				0						TACACAGACCGAAGTTAATTG	0.328													5	22					0	0	1	0	0
RECQL	5965	broad.mit.edu	37	12	21636346	21636346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:21636346G>A	uc001rex.2	-	7	1012	c.664C>T	c.(664-666)CAC>TAC	p.H222Y	RECQL_uc001rey.2_Missense_Mutation_p.H222Y	NM_032941	NP_116559	P46063	RECQ1_HUMAN	RecQ protein-like	222	Helicase ATP-binding.|DEVH box.				DNA recombination|DNA repair|DNA replication	nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|DNA strand annealing activity|protein binding			ovary(1)|lung(1)	2						CTACAGCAGTGAACTTCATCC	0.393								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					4	23					0	0	1	0	0
GYS2	2998	broad.mit.edu	37	12	21712069	21712069	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:21712069G>A	uc001rfb.2	-	10	1519	c.1264C>T	c.(1264-1266)CGA>TGA	p.R422*		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	422					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						AGATCATCTCGATCTAAAATA	0.333													6	21					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	21967627	21967627	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:21967627C>T	uc001rfi.1	-	33	4073	c.4053G>A	c.(4051-4053)GGG>GGA	p.G1351G	ABCC9_uc001rfh.2_Silent_p.G1351G|ABCC9_uc001rfj.1_Silent_p.G1315G	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1351	Cytoplasmic (Potential).|ATP 2 (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ACGATGATTTCCCACTGCCAG	0.398													3	10					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	22028661	22028661	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:22028661C>T	uc001rfi.1	-	15	2040	c.2020_splice	c.e15-1	p.V674_splice	ABCC9_uc001rfh.2_Splice_Site_p.V674_splice|ABCC9_uc001rfj.1_Splice_Site_p.V638_splice	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9						defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CATTTGTGACCTACAAAATAA	0.234													7	31					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	22040791	22040791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:22040791G>A	uc001rfi.1	-	13	1900	c.1880C>T	c.(1879-1881)CCT>CTT	p.P627L	ABCC9_uc001rfh.2_Missense_Mutation_p.P627L|ABCC9_uc001rfj.1_Missense_Mutation_p.P627L	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	627	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GGACTCAAAAGGAAGCGAACT	0.393													9	37					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	22089560	22089560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:22089560C>T	uc001rfi.1	-	1	69	c.49G>A	c.(49-51)GAT>AAT	p.D17N	ABCC9_uc001rfh.2_Missense_Mutation_p.D17N|ABCC9_uc001rfj.1_Missense_Mutation_p.D17N|ABCC9_uc001rfk.2_Missense_Mutation_p.D17N|ABCC9_uc001rfl.1_Missense_Mutation_p.D17N	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	17	Extracellular (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	AGTACACCATCGTTGATATTA	0.343													6	24					0	0	1	0	0
SOX5	6660	broad.mit.edu	37	12	23687209	23687209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:23687209G>A	uc001rfw.2	-	15	2338	c.2236C>T	c.(2236-2238)CCA>TCA	p.P746S	SOX5_uc001rfx.2_Missense_Mutation_p.P733S|SOX5_uc001rfy.2_Missense_Mutation_p.P625S|SOX5_uc001rfv.2_Missense_Mutation_p.P360S|SOX5_uc010siv.1_Missense_Mutation_p.P733S	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	746					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						TCTACATCTGGATCATCCTCT	0.433													14	99					0	0	1	0	0
SOX5	6660	broad.mit.edu	37	12	23696305	23696305	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:23696305G>A	uc001rfw.2	-	13	1713	c.1611C>T	c.(1609-1611)GTC>GTT	p.V537V	SOX5_uc001rfx.2_Silent_p.V524V|SOX5_uc001rfy.2_Silent_p.V416V|SOX5_uc001rfv.2_Silent_p.V151V|SOX5_uc010siv.1_Silent_p.V524V|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Silent_p.V489V	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	537					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						TTGACTCTGAGACTCCAGCAC	0.423													5	67					0	0	1	0	0
SOX5	6660	broad.mit.edu	37	12	23999037	23999037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:23999037C>T	uc001rfw.2	-	3	463	c.361G>A	c.(361-363)GGC>AGC	p.G121S	SOX5_uc001rfx.2_Missense_Mutation_p.G108S|SOX5_uc001rfy.2_Missense_Mutation_p.G108S|SOX5_uc010siv.1_Missense_Mutation_p.G108S|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Missense_Mutation_p.G73S|SOX5_uc001rga.2_Missense_Mutation_p.G86S	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	121					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						AAGGACTCGCCACTCTGTCGC	0.493													5	22					0	0	1	0	0
ARNTL2	56938	broad.mit.edu	37	12	27573396	27573396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:27573396G>A	uc001rht.1	+	17	1860	c.1842G>A	c.(1840-1842)ATG>ATA	p.M614I	ARNTL2_uc001rhw.2_Missense_Mutation_p.M577I|ARNTL2_uc010sjp.1_Silent_p.*541*|ARNTL2_uc001rhu.1_Missense_Mutation_p.M600I|ARNTL2_uc009zji.1_Missense_Mutation_p.M580I|ARNTL2_uc001rhv.1_Missense_Mutation_p.M566I|uc001rhx.2_Intron	NM_020183	NP_064568	Q8WYA1	BMAL2_HUMAN	aryl hydrocarbon receptor nuclear	614					circadian rhythm|entrainment of circadian clock|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|skin(1)	2	Colorectal(261;0.0847)|Lung SC(9;0.184)					CTGCATTTATGAATTACTTAG	0.448													5	72					0	0	1	0	0
REP15	387849	broad.mit.edu	37	12	27850085	27850085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:27850085C>T	uc001rig.1	+	1	658	c.590C>T	c.(589-591)GCT>GTT	p.A197V		NM_001029874	NP_001025045	Q6BDI9	REP15_HUMAN	RAB15 effector protein	197						early endosome membrane				ovary(1)	1	Lung SC(9;0.0873)					GGAGGGAAGGCTGTGGCTCAG	0.493													6	50					0	0	1	0	0
PTHLH	5744	broad.mit.edu	37	12	28116635	28116635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:28116635C>T	uc001rik.2	-	3	473	c.170G>A	c.(169-171)CGA>CAA	p.R57Q	PTHLH_uc001ril.2_Missense_Mutation_p.R57Q|PTHLH_uc001rim.2_Missense_Mutation_p.R57Q|PTHLH_uc001rin.2_Missense_Mutation_p.R57Q	NM_198966	NP_945317	P12272	PTHR_HUMAN	parathyroid hormone-like hormone isoform 1	57	Important for receptor binding.			R->A: Strongly reduced affinity for PTH1R.	activation of adenylate cyclase activity by G-protein signaling pathway|cAMP metabolic process|cell-cell signaling|epidermis development|female pregnancy|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation	cytoplasm|extracellular space|nucleus	hormone activity|peptide hormone receptor binding			breast(1)	1	Lung SC(9;0.184)					AAGGAAGAATCGTCGCCGTAA	0.473													19	103					0	0	1	0	0
CCDC91	55297	broad.mit.edu	37	12	28605449	28605449	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:28605449C>T	uc001riq.2	+	10	979	c.963C>T	c.(961-963)GTC>GTT	p.V321V	CCDC91_uc001rio.2_Silent_p.V291V|CCDC91_uc009zjk.2_RNA|CCDC91_uc001rip.1_Silent_p.V321V|CCDC91_uc001rir.2_Silent_p.V159V|CCDC91_uc009zjl.2_Silent_p.V123V	NM_018318	NP_060788	Q7Z6B0	CCD91_HUMAN	GGA binding partner	321	Potential.|Homodimerization.				protein transport	Golgi apparatus|membrane				central_nervous_system(1)	1	Acute lymphoblastic leukemia(23;0.00718)|all_hematologic(23;0.0113)|Lung SC(9;0.184)					TTTTAAAAGTCGTAGAAGAAG	0.313													7	24					0	0	1	0	0
OVCH1	341350	broad.mit.edu	37	12	29648366	29648366	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:29648366C>T	uc001rix.1	-	4	306	c.306G>A	c.(304-306)GTG>GTA	p.V102V		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	102	Peptidase S1 1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity	p.V102A(1)		ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					CCCCAGAAGTCACAGTTATAT	0.363													9	38					0	0	1	0	0
FGD4	121512	broad.mit.edu	37	12	32755144	32755144	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:32755144C>A	uc001rkz.2	+	7	1363	c.886C>A	c.(886-888)CTT>ATT	p.L296I	FGD4_uc001rlc.2_Missense_Mutation_p.L381I|FGD4_uc001rky.2_Missense_Mutation_p.L48I|FGD4_uc001rla.2_5'UTR|FGD4_uc010ske.1_Missense_Mutation_p.L408I|FGD4_uc001rlb.1_RNA	NM_139241	NP_640334	Q96M96	FGD4_HUMAN	FYVE, RhoGEF and PH domain containing 4	296	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|filopodium|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)					GGCACCATTCCTTAAGATGTA	0.313													9	107					7.03913e-09	7.13431e-09	1	1	0
PKP2	5318	broad.mit.edu	37	12	33003895	33003895	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:33003895G>A	uc001rlj.3	-	5	1298	c.1183C>T	c.(1183-1185)CGT>TGT	p.R395C	PKP2_uc001rlk.3_Missense_Mutation_p.R395C|PKP2_uc010skj.1_Missense_Mutation_p.R395C	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	395	ARM 2.				cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					AGGATGCCACGAAGCTGGTTA	0.408													9	58					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	33031367	33031367	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:33031367C>T	uc001rlj.3	-	3	562	c.447G>A	c.(445-447)GAG>GAA	p.E149E	PKP2_uc001rlk.3_Silent_p.E149E|PKP2_uc010skj.1_Silent_p.E149E	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	149					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					CAGGAGAAATCTCCAGTCTCC	0.567													38	229					0	0	1	0	0
CPNE8	144402	broad.mit.edu	37	12	39223219	39223219	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:39223219G>A	uc001rls.1	-	6	453	c.369C>T	c.(367-369)ATC>ATT	p.I123I		NM_153634	NP_705898	Q86YQ8	CPNE8_HUMAN	copine VIII	123										pancreas(1)	1	Esophageal squamous(101;0.187)	Lung NSC(34;0.137)|Melanoma(24;0.152)|all_lung(34;0.157)				GTGAACCAACGATCTCTCCCA	0.328													7	67					0	0	1	0	0
KIF21A	55605	broad.mit.edu	37	12	39703566	39703566	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:39703566G>A	uc001rly.2	-	33	4245	c.4099C>T	c.(4099-4101)CGT>TGT	p.R1367C	KIF21A_uc001rlv.2_Missense_Mutation_p.R312C|KIF21A_uc001rlw.2_Missense_Mutation_p.R637C|KIF21A_uc001rlx.2_Missense_Mutation_p.R1354C|KIF21A_uc001rlz.2_Missense_Mutation_p.R1314C|KIF21A_uc010skl.1_Missense_Mutation_p.R1330C|KIF21A_uc001rlt.2_5'UTR|KIF21A_uc001rlu.2_5'UTR	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	1367	WD 1.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				TTACAAGTACGATCTAAAACA	0.323													3	10					0	0	1	0	0
KIF21A	55605	broad.mit.edu	37	12	39752126	39752126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:39752126C>T	uc001rly.2	-	8	1215	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	KIF21A_uc001rlx.2_Missense_Mutation_p.E357K|KIF21A_uc001rlz.2_Missense_Mutation_p.E357K|KIF21A_uc010skl.1_Missense_Mutation_p.E357K|KIF21A_uc001rma.1_Missense_Mutation_p.E365K	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	357					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				TTTAACGTTTCCATAAAGTCT	0.393													4	63					0	0	1	0	0
KIF21A	55605	broad.mit.edu	37	12	39761753	39761753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:39761753G>A	uc001rly.2	-	4	678	c.532C>T	c.(532-534)CAT>TAT	p.H178Y	KIF21A_uc001rlx.2_Missense_Mutation_p.H178Y|KIF21A_uc001rlz.2_Missense_Mutation_p.H178Y|KIF21A_uc010skl.1_Missense_Mutation_p.H178Y|KIF21A_uc001rma.1_Missense_Mutation_p.H178Y	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	178	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				GAATCTTCATGAATTCTTATA	0.299													4	51					0	0	1	0	0
CNTN1	1272	broad.mit.edu	37	12	41419077	41419077	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:41419077C>T	uc001rmm.1	+	21	2762	c.2649C>T	c.(2647-2649)GCC>GCT	p.A883A	CNTN1_uc001rmn.1_Silent_p.A872A	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	883	Fibronectin type-III 3.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				AAGTCGGGGCCTGCAATAGTG	0.473													6	56					0	0	1	0	0
TMEM117	84216	broad.mit.edu	37	12	44238470	44238470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:44238470C>T	uc001rod.2	+	2	82	c.16C>T	c.(16-18)CGT>TGT	p.R6C	TMEM117_uc001roe.2_5'UTR|TMEM117_uc009zkc.2_Missense_Mutation_p.R6C	NM_032256	NP_115632	Q9H0C3	TM117_HUMAN	transmembrane protein 117	6						endoplasmic reticulum|integral to membrane					0	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.124)		TAAAGACTTTCGTTACTATTT	0.403													12	66					0	0	1	0	0
NELL2	4753	broad.mit.edu	37	12	44917141	44917141	+	Missense_Mutation	SNP	C	T	T	rs144132963		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:44917141C>T	uc001rog.2	-	17	2526	c.1931G>A	c.(1930-1932)GGA>GAA	p.G644E	NELL2_uc001rof.3_Missense_Mutation_p.G643E|NELL2_uc001roh.2_Missense_Mutation_p.G644E|NELL2_uc009zkd.2_Missense_Mutation_p.G596E|NELL2_uc010skz.1_Missense_Mutation_p.G694E|NELL2_uc010sla.1_Missense_Mutation_p.G667E|NELL2_uc001roi.1_Missense_Mutation_p.G644E	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	644	VWFC 3.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity	p.G644E(1)		skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		CTTAACTTTTCCATCATGGAT	0.403													10	92					0	0	1	0	0
FAM113B	91523	broad.mit.edu	37	12	47629323	47629323	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:47629323C>T	uc001rpn.2	+	4	1208	c.477C>T	c.(475-477)CTC>CTT	p.L159L	FAM113B_uc010slj.1_Silent_p.L39L|FAM113B_uc001rpq.2_Silent_p.L159L	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	159							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					AGTCTTGCCTCCTGGTGTGGA	0.612													6	39					0	0	1	0	0
FAM113B	91523	broad.mit.edu	37	12	47629874	47629874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:47629874C>T	uc001rpn.2	+	4	1759	c.1028C>T	c.(1027-1029)TCC>TTC	p.S343F	FAM113B_uc001rpq.2_Missense_Mutation_p.S343F	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	343	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					GCCTGTTTTTCCTCAGACCAT	0.393													24	139					0	0	1	0	0
HDAC7	51564	broad.mit.edu	37	12	48181875	48181875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:48181875G>A	uc010slo.1	-	20	2503	c.2308C>T	c.(2308-2310)CGC>TGC	p.R770C	HDAC7_uc009zku.2_RNA|HDAC7_uc001rqe.2_Missense_Mutation_p.R204C|HDAC7_uc001rqj.3_Missense_Mutation_p.R733C|HDAC7_uc001rqk.3_Missense_Mutation_p.R753C|HDAC7_uc010slp.1_5'UTR	NM_015401	NP_056216	Q8WUI4	HDAC7_HUMAN	histone deacetylase 7 isoform a	731	Histone deacetylase.				negative regulation of interleukin-2 production|negative regulation of osteoblast differentiation|positive regulation of cell migration involved in sprouting angiogenesis|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.137)		TCGTCATGGCGATGCAGGGAG	0.592													5	80					0	0	1	0	0
COL2A1	1280	broad.mit.edu	37	12	48390375	48390375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:48390375C>T	uc001rqu.2	-	8	746	c.565G>A	c.(565-567)GAA>AAA	p.E189K	COL2A1_uc001rqv.2_Missense_Mutation_p.E120K	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	189					axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	CCAGCCTTTTCATCAAATCCT	0.498													16	281					0	0	1	0	0
COL2A1	1280	broad.mit.edu	37	12	48393715	48393715	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:48393715G>A	uc001rqu.2	-	2	460	c.279C>T	c.(277-279)CTC>CTT	p.L93L	COL2A1_uc001rqv.2_Intron	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	93					axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	TGGCAGTGGCGAGGTCAGTTG	0.498													9	73					0	0	1	0	0
SENP1	29843	broad.mit.edu	37	12	48458892	48458892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:48458892G>A	uc001rqx.2	-	12	1677	c.1231C>T	c.(1231-1233)CAT>TAT	p.H411Y	SENP1_uc001rqw.2_Missense_Mutation_p.H411Y|SENP1_uc001rqy.2_Missense_Mutation_p.H212Y|SENP1_uc001rqz.2_Missense_Mutation_p.H212Y|SENP1_uc009zkx.2_Missense_Mutation_p.H411Y	NM_014554	NP_055369	Q9P0U3	SENP1_HUMAN	sentrin/SUMO-specific protease 1	411					activation of caspase activity|induction of apoptosis by extracellular signals|protein desumoylation|proteolysis	cytoplasm|nucleus	endopeptidase activity|SUMO-specific protease activity			pancreas(2)|lung(1)	3		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)				GTTAATTTATGACCTTTTTTT	0.338													3	6					0	0	1	0	0
OR8S1	341568	broad.mit.edu	37	12	48919962	48919962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:48919962C>T	uc010slu.1	+	1	548	c.548C>T	c.(547-549)TCC>TTC	p.S183F		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GAGATGCCATCCCTCCTCCCT	0.498													8	75					0	0	1	0	0
C12orf41	54934	broad.mit.edu	37	12	49065687	49065687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:49065687G>A	uc001rrx.2	-	5	679	c.604C>T	c.(604-606)CGT>TGT	p.R202C	C12orf41_uc001rrw.2_Missense_Mutation_p.R7C|C12orf41_uc001rrz.2_Missense_Mutation_p.R385C|C12orf41_uc001rry.2_RNA|C12orf41_uc001rrv.2_5'Flank	NM_017822	NP_060292	Q9H9L4	CL041_HUMAN	hypothetical protein LOC54934	202										ovary(2)	2						GACTGCAAACGAATTAGCTTT	0.403													14	88					0	0	1	0	0
DDX23	9416	broad.mit.edu	37	12	49233689	49233689	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:49233689G>A	uc001rsm.2	-	5	509	c.418C>T	c.(418-420)CAG>TAG	p.Q140*		NM_004818	NP_004809	Q9BUQ8	DDX23_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	140	Glu-rich.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent RNA helicase activity|nucleic acid binding|protein binding			kidney(3)|ovary(1)|lung(1)|skin(1)	6						GATAATGGCTGGGCCTGAAGA	0.403													9	47					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49445423	49445423	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:49445423G>A	uc001rta.3	-	10	2043	c.2043C>T	c.(2041-2043)TCC>TCT	p.S681S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	681	Pro-rich.			Missing (in Ref. 1; AAC51734).	chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CAGGTGGAGGGGACGTGGGAG	0.662			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			7	68					0	0	1	0	0
LMBR1L	55716	broad.mit.edu	37	12	49497551	49497551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:49497551G>A	uc001rth.3	-	6	823	c.481C>T	c.(481-483)CTC>TTC	p.L161F	LMBR1L_uc001rtg.3_Missense_Mutation_p.L156F|LMBR1L_uc001rti.3_Missense_Mutation_p.L161F|LMBR1L_uc001rtj.1_Missense_Mutation_p.L5F|LMBR1L_uc009zld.1_Missense_Mutation_p.L34F|LMBR1L_uc010smf.1_RNA	NM_018113	NP_060583	Q6UX01	LMBRL_HUMAN	lipocalin-interacting membrane receptor	161	Helical; (Potential).				endocytosis	integral to membrane|plasma membrane	receptor activity			pancreas(1)	1						AGCAGAGTGAGGAGCATCAAC	0.552													7	113					0	0	1	0	0
KCNH3	23416	broad.mit.edu	37	12	49937160	49937160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:49937160G>A	uc001ruh.1	+	5	942	c.682G>A	c.(682-684)GAT>AAT	p.D228N	KCNH3_uc010smj.1_Missense_Mutation_p.D168N	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	228	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						AGCCACCTGGGATGGCTTCAT	0.617													6	40					0	0	1	0	0
KCNH3	23416	broad.mit.edu	37	12	49948261	49948261	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:49948261A>G	uc001ruh.1	+	11	2320	c.2060A>G	c.(2059-2061)GAG>GGG	p.E687G	KCNH3_uc010smj.1_Missense_Mutation_p.E627G	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	687	cNMP.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						CTGTACCCCGAGTTTGCCCCG	0.632													7	82					0	0	1	0	0
KCNH3	23416	broad.mit.edu	37	12	49949581	49949581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:49949581G>A	uc001ruh.1	+	12	2575	c.2315G>A	c.(2314-2316)CGA>CAA	p.R772Q	KCNH3_uc010smj.1_Missense_Mutation_p.R712Q	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	772	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						TCCCCACGTCGAACAGCACCC	0.692													5	36					0	0	1	0	0
AQP2	359	broad.mit.edu	37	12	50344697	50344697	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:50344697C>T	uc001rvn.2	+	1	174	c.84C>T	c.(82-84)CTC>CTT	p.L28L		NM_000486	NP_000477	P41181	AQP2_HUMAN	aquaporin 2	28	Helical; (Potential).		L -> P (in ANDI).		cellular response to copper ion|cellular response to mercury ion|excretion	apical plasma membrane|integral to membrane|transport vesicle membrane	glycerol transmembrane transporter activity|water channel activity			ovary(2)	2						TCTTTGGCCTCGGCTCTGCCC	0.617													5	64					0	0	1	0	0
GPD1	2819	broad.mit.edu	37	12	50497865	50497865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:50497865C>T	uc001rvz.2	+	1	65	c.32C>T	c.(31-33)TCC>TTC	p.S11F	GPD1_uc010smp.1_Missense_Mutation_p.S11F|GPD1_uc001rwa.2_Missense_Mutation_p.S11F	NM_005276	NP_005267	P21695	GPDA_HUMAN	glycerol-3-phosphate dehydrogenase 1 (soluble)	11	NAD.				glycerol-3-phosphate catabolic process|triglyceride biosynthetic process	cytosol|glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|protein homodimerization activity				0					NADH(DB00157)	ATTGTAGGCTCCGGGAACTGG	0.597													7	99					0	0	1	0	0
LASS5	91012	broad.mit.edu	37	12	50532358	50532358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:50532358G>A	uc001rwd.3	-	5	552	c.535C>T	c.(535-537)CCA>TCA	p.P179S	LASS5_uc001rwc.2_Missense_Mutation_p.P98S|LASS5_uc001rwe.3_Missense_Mutation_p.P120S|LASS5_uc001rwf.3_RNA|LASS5_uc010smq.1_Missense_Mutation_p.P35S	NM_147190	NP_671723	Q8N5B7	CERS5_HUMAN	LAG1 homolog, ceramide synthase 5	179	Lumenal (Potential).|TLC.				ceramide biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity				0						ACCTGAAATGGATAGTTATGC	0.483													10	119					0	0	1	0	0
LARP4	113251	broad.mit.edu	37	12	50854977	50854977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:50854977C>T	uc001rwp.1	+	11	1325	c.1181C>T	c.(1180-1182)TCC>TTC	p.S394F	LARP4_uc001rwo.1_Missense_Mutation_p.S400F|LARP4_uc001rwq.1_Missense_Mutation_p.S323F|LARP4_uc001rwr.1_Intron|LARP4_uc001rws.1_Missense_Mutation_p.S393F|LARP4_uc009zlr.1_Missense_Mutation_p.S213F|LARP4_uc001rwt.1_Intron|LARP4_uc001rwm.2_Missense_Mutation_p.S394F|LARP4_uc001rwn.2_Missense_Mutation_p.S324F	NM_052879	NP_443111	Q71RC2	LARP4_HUMAN	c-Mpl binding protein isoform a	394							nucleotide binding|RNA binding			ovary(1)	1						GGCTCTGTATCCTTGGGGGAT	0.438													8	68					0	0	1	0	0
POU6F1	5463	broad.mit.edu	37	12	51584128	51584128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:51584128C>T	uc001rxy.2	-	5	1000	c.808G>A	c.(808-810)GAG>AAG	p.E270K	POU6F1_uc001rxz.2_Missense_Mutation_p.E270K|POU6F1_uc001rya.2_Missense_Mutation_p.E270K	NM_002702	NP_002693	Q14863	PO6F1_HUMAN	POU class 6 homeobox 1	270	Homeobox.				brain development|heart development|muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						TAGTTGAGCTCCTTAGCAATT	0.557													6	111					0	0	1	0	0
BIN2	51411	broad.mit.edu	37	12	51690900	51690900	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:51690900C>T	uc001ryg.2	-	8	703	c.651G>A	c.(649-651)AGG>AGA	p.R217R	BIN2_uc009zlz.2_Silent_p.R185R|BIN2_uc001ryh.2_Silent_p.R93R|BIN2_uc010sng.1_Silent_p.R191R	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	217	BAR.					cytoplasm	protein binding			ovary(1)	1						AGAAGACATCCCTCAAGTTGG	0.433													8	46					0	0	1	0	0
GALNT6	11226	broad.mit.edu	37	12	51749712	51749712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:51749712G>A	uc001ryk.2	-	10	1858	c.1633C>T	c.(1633-1635)CGC>TGC	p.R545C	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Missense_Mutation_p.R545C|GALNT6_uc001ryj.1_Missense_Mutation_p.R110C	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	545	Ricin B-type lectin.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						ATGTTGTGGCGAAGGTCCCTC	0.542													4	72					0	0	1	0	0
GALNT6	11226	broad.mit.edu	37	12	51751158	51751158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:51751158G>A	uc001ryk.2	-	9	1802	c.1577C>T	c.(1576-1578)TCC>TTC	p.S526F	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Missense_Mutation_p.S526F|GALNT6_uc001ryj.1_Missense_Mutation_p.S91F	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	526	Ricin B-type lectin.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						GCCGTGGCAGGAGTACATGAT	0.587													6	39					0	0	1	0	0
GALNT6	11226	broad.mit.edu	37	12	51758013	51758013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:51758013C>T	uc001ryk.2	-	5	1166	c.941G>A	c.(940-942)AGG>AAG	p.R314K	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Missense_Mutation_p.R314K	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	314	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						GACTCTGCCCCTCTGGACGGG	0.562													4	49					0	0	1	0	0
SLC4A8	9498	broad.mit.edu	37	12	51851302	51851302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:51851302C>T	uc001rys.1	+	6	920	c.742C>T	c.(742-744)CCT>TCT	p.P248S	SLC4A8_uc010sni.1_Missense_Mutation_p.P195S|SLC4A8_uc001rym.2_Missense_Mutation_p.P195S|SLC4A8_uc001ryn.2_Missense_Mutation_p.P195S|SLC4A8_uc001ryo.2_Missense_Mutation_p.P195S|SLC4A8_uc001ryp.1_Missense_Mutation_p.P195S|SLC4A8_uc010snj.1_Missense_Mutation_p.P275S|SLC4A8_uc001ryq.3_Missense_Mutation_p.P248S|SLC4A8_uc001ryr.2_Missense_Mutation_p.P248S|SLC4A8_uc010snk.1_Missense_Mutation_p.P195S	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	248	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		GCAGTCTGATCCTCATTTGAT	0.393													4	36					0	0	1	0	0
SLC4A8	9498	broad.mit.edu	37	12	51887520	51887520	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:51887520C>T	uc001rys.1	+	20	2911	c.2733C>T	c.(2731-2733)TTC>TTT	p.F911F	SLC4A8_uc001rym.2_Silent_p.F858F|SLC4A8_uc001ryn.2_Silent_p.F858F|SLC4A8_uc001ryo.2_Silent_p.F858F|SLC4A8_uc010snj.1_Silent_p.F938F|SLC4A8_uc001ryr.2_Silent_p.F911F	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	911	Helical; (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		ACGGAGTTTTCCTTTACATGG	0.413													17	125					0	0	1	0	0
SCN8A	6334	broad.mit.edu	37	12	52156447	52156447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:52156447G>A	uc001ryw.2	+	15	2709	c.2531G>A	c.(2530-2532)CGA>CAA	p.R844Q	SCN8A_uc010snl.1_Missense_Mutation_p.R709Q|SCN8A_uc001ryy.2_Missense_Mutation_p.R709Q	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	844	Helical; Voltage-sensor; Name=S4 of repeat II; (Potential).|II.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	TCAGTGCTGCGATCTTTCCGA	0.363													5	62					0	0	1	0	0
KRT85	3891	broad.mit.edu	37	12	52756079	52756079	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:52756079G>A	uc001sag.2	-	7	1374	c.1254C>T	c.(1252-1254)ATC>ATT	p.I418I		NM_002283	NP_002274	P78386	KRT85_HUMAN	keratin 85	418	Rod.|Coil 2.				epidermis development	keratin filament	protein binding|structural molecule activity			ovary(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		TGGCGATCTCGATGTCCAGGC	0.622													8	79					0	0	1	0	0
KRT85	3891	broad.mit.edu	37	12	52756661	52756661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:52756661C>T	uc001sag.2	-	6	1174	c.1054G>A	c.(1054-1056)GAG>AAG	p.E352K		NM_002283	NP_002274	P78386	KRT85_HUMAN	keratin 85	352	Rod.|Coil 2.				epidermis development	keratin filament	protein binding|structural molecule activity			ovary(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		TTCTCAATCTCGGCCGTCAGC	0.592													8	70					0	0	1	0	0
KRT6B	3854	broad.mit.edu	37	12	52844314	52844314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:52844314C>T	uc001sak.2	-	2	679	c.631G>A	c.(631-633)GAG>AAG	p.E211K		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	211	Rod.|Linker 1.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		AACAACGGCTCCAGGTTCTGC	0.587													14	64					0	0	1	0	0
KRT6C	286887	broad.mit.edu	37	12	52864920	52864920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:52864920G>A	uc001sal.3	-	5	1121	c.1073C>T	c.(1072-1074)ACC>ATC	p.T358I		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	358	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		GCTCACCTTGGTCTGGTACCA	0.582													22	148					0	0	1	0	0
KRT71	112802	broad.mit.edu	37	12	52938396	52938396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:52938396G>A	uc001sao.2	-	9	1562	c.1492C>T	c.(1492-1494)CGG>TGG	p.R498W		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	498	Tail.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		GCACTGCCCCGGCTCCTGCCC	0.622													7	111					0	0	1	0	0
KRT72	140807	broad.mit.edu	37	12	52980754	52980754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:52980754C>T	uc001sar.2	-	8	1407	c.1321G>A	c.(1321-1323)GAA>AAA	p.E441K	KRT72_uc001saq.2_Missense_Mutation_p.E441K|KRT72_uc010sns.1_Missense_Mutation_p.E399K|KRT72_uc010snt.1_Missense_Mutation_p.E253K	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	441	Tail.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		TTTGGATATTCGCCAGACATC	0.453													8	34					0	0	1	0	0
KRT2	3849	broad.mit.edu	37	12	53044217	53044217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:53044217G>A	uc001sat.2	-	2	739	c.706C>T	c.(706-708)CTC>TTC	p.L236F		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	236	Coil 1B.|Rod.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		TATCTCTTGAGGCTGTCGATA	0.473													8	135					0	0	1	0	0
KRT1	3848	broad.mit.edu	37	12	53070916	53070916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:53070916G>A	uc001sau.1	-	6	1240	c.1181C>T	c.(1180-1182)TCA>TTA	p.S394L	KRT1_uc001sav.1_Missense_Mutation_p.S394L	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	394	Rod.|Coil 2.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						TTCTATCTTTGAATTTCTCAC	0.418													11	64					0	0	1	0	0
KRT1	3848	broad.mit.edu	37	12	53070922	53070922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:53070922C>T	uc001sau.1	-	6	1234	c.1175G>A	c.(1174-1176)AGA>AAA	p.R392K	KRT1_uc001sav.1_Missense_Mutation_p.R392K	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	392	Rod.|Coil 2.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						CTTTGAATTTCTCACACTATC	0.423													11	63					0	0	1	0	0
KRT76	51350	broad.mit.edu	37	12	53169180	53169180	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:53169180G>A	uc001sax.2	-	2	861	c.807C>T	c.(805-807)TTC>TTT	p.F269F		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	269	Coil 1B.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						ACTTCTTTTTGAAGTCTTCCA	0.517													9	94					0	0	1	0	0
KRT4	3851	broad.mit.edu	37	12	53201524	53201524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:53201524C>T	uc001saz.2	-	7	1743	c.1472G>A	c.(1471-1473)CGA>CAA	p.R491Q		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	417						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						ACGCAGCATTCGTGCCAGCTC	0.597													8	62					0	0	1	0	0
KRT79	338785	broad.mit.edu	37	12	53224066	53224066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:53224066C>T	uc001sbb.2	-	3	742	c.709G>A	c.(709-711)GAA>AAA	p.E237K	KRT79_uc001sba.2_Missense_Mutation_p.E8K	NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	237	Rod.|Coil 1B.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						TTGTTGATTTCATCCTCGTAC	0.572													5	63					0	0	1	0	0
MFSD5	84975	broad.mit.edu	37	12	53646906	53646906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:53646906C>T	uc001sci.1	+	2	478	c.287C>T	c.(286-288)TCC>TTC	p.S96F	MFSD5_uc001sch.1_Missense_Mutation_p.S203F	NM_032889	NP_116278	Q6N075	MFSD5_HUMAN	major facilitator superfamily domain containing	96	Helical; (Potential).				transport	integral to membrane				skin(2)|ovary(1)	3						CTAGTGGCCTCCTCCCTTGTG	0.478													30	292					0	0	1	0	0
ESPL1	9700	broad.mit.edu	37	12	53671347	53671347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:53671347C>T	uc001sck.2	+	10	2270	c.2179C>T	c.(2179-2181)CGT>TGT	p.R727C	ESPL1_uc001scj.2_Missense_Mutation_p.R402C|ESPL1_uc010soe.1_5'Flank	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	727					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						CCAGGAAGATCGTTTCCTATA	0.502													7	72					0	0	1	0	0
ESPL1	9700	broad.mit.edu	37	12	53685505	53685505	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:53685505C>T	uc001sck.2	+	26	5643	c.5552C>T	c.(5551-5553)CCT>CTT	p.P1851L	ESPL1_uc001scj.2_Missense_Mutation_p.P1526L	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	1851					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						GCCCTCACCCCTCAGGACATT	0.587													15	170					0	0	1	0	0
SP7	121340	broad.mit.edu	37	12	53722523	53722523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:53722523C>T	uc001sct.2	-	2	810	c.703G>A	c.(703-705)GGA>AGA	p.G235R	SP7_uc001scu.2_Missense_Mutation_p.G217R|SP7_uc001scv.2_Missense_Mutation_p.G235R	NM_152860	NP_690599	Q8TDD2	SP7_HUMAN	osterix	235					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCACTATTTCCCACTGCCTTG	0.612													8	53					0	0	1	0	0
SP1	6667	broad.mit.edu	37	12	53776470	53776470	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:53776470T>C	uc001scw.2	+	3	836	c.739T>C	c.(739-741)TCA>CCA	p.S247P	SP1_uc010sog.1_Missense_Mutation_p.S240P	NM_138473	NP_612482	P08047	SP1_HUMAN	Sp1 transcription factor isoform a	247	Transactivation domain A (Gln-rich).				positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	double-stranded DNA binding|histone deacetylase binding|HMG box domain binding|protein C-terminus binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(357;0.00527)		TAATGTACTCTCAGGACAGAC	0.507													10	75					0	0	1	0	0
AMHR2	269	broad.mit.edu	37	12	53823296	53823296	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:53823296G>A	uc001scx.1	+	8	1105	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K	AMHR2_uc009zmy.1_Missense_Mutation_p.E343K	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	343	Cytoplasmic (Potential).|Protein kinase.				Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	GCTCATTCGGGAAGATGGATC	0.552									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				4	37					0	0	1	0	0
AMHR2	269	broad.mit.edu	37	12	53824999	53824999	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:53824999G>A	uc001scx.1	+	11	1542	c.1464G>A	c.(1462-1464)TGG>TGA	p.W488*	AMHR2_uc009zmy.1_3'UTR	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	488	Cytoplasmic (Potential).|Protein kinase.				Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	AAGACTGTTGGGATGCAGACC	0.597									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				5	90					0	0	1	0	0
ATF7	11016	broad.mit.edu	37	12	53931283	53931283	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:53931283G>A	uc001sdy.2	-	4	372	c.351C>T	c.(349-351)ATC>ATT	p.I117I	ATF7_uc010sok.1_RNA|ATF7_uc001sdz.2_Silent_p.I106I|ATF7_uc010sol.1_Silent_p.I106I	NM_001130059	NP_001123531	P17544	ATF7_HUMAN	activating transcription factor 7 isoform 1	117	Transactivation domain.				interspecies interaction between organisms	cytoplasm|nuclear periphery|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						CTTCTTCTTTGATTTTGATGT	0.483													5	32					0	0	1	0	0
CALCOCO1	57658	broad.mit.edu	37	12	54115306	54115306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:54115306C>T	uc001sef.2	-	6	847	c.703G>A	c.(703-705)GAT>AAT	p.D235N	CALCOCO1_uc010som.1_Missense_Mutation_p.D202N|CALCOCO1_uc010son.1_Missense_Mutation_p.D112N|CALCOCO1_uc001seh.2_Missense_Mutation_p.D235N|CALCOCO1_uc009znd.2_Missense_Mutation_p.D235N|CALCOCO1_uc001seg.2_Missense_Mutation_p.D112N|CALCOCO1_uc010soo.1_Missense_Mutation_p.D228N	NM_020898	NP_065949	Q9P1Z2	CACO1_HUMAN	coiled-coil transcriptional coactivator isoform	235	Potential.				steroid hormone receptor signaling pathway|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm	armadillo repeat domain binding|beta-catenin binding|ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|sequence-specific DNA binding|transcription regulatory region DNA binding			ovary(1)	1						TGGATGTCATCCTCTAGCTCC	0.567													48	260					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54914992	54914992	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:54914992C>T	uc001sgc.3	+	18	1927	c.1848C>T	c.(1846-1848)ATC>ATT	p.I616I	NCKAP1L_uc010sox.1_Silent_p.I158I|NCKAP1L_uc010soy.1_Silent_p.I566I	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	616					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						TCCTGGAGATCTGTGCTGAGC	0.547													3	32					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54917199	54917199	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:54917199A>C	uc001sgc.3	+	19	1979	c.1900A>C	c.(1900-1902)ACT>CCT	p.T634P	NCKAP1L_uc010sox.1_Missense_Mutation_p.T176P|NCKAP1L_uc010soy.1_Missense_Mutation_p.T584P	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	634					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						GCACTGTGCCACTACAATCAG	0.478													3	113					0	0	1	0	0
PPP1R1A	5502	broad.mit.edu	37	12	54976536	54976536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:54976536C>T	uc001sgg.2	-	4	398	c.227G>A	c.(226-228)AGG>AAG	p.R76K		NM_006741	NP_006732	Q13522	PPR1A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	76					glycogen metabolic process|signal transduction		protein binding|protein serine/threonine phosphatase inhibitor activity				0						GGGTGTGATCCTTGTCATCTT	0.562													4	83					0	0	1	0	0
DCD	117159	broad.mit.edu	37	12	55039483	55039483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:55039483C>T	uc001sgj.2	-	3	168	c.106G>A	c.(106-108)GAA>AAA	p.E36K	DCD_uc009znt.2_Missense_Mutation_p.E36K|DCD_uc009znu.2_RNA	NM_053283	NP_444513	P81605	DCD_HUMAN	dermcidin preproprotein	36					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular region	protein binding			ovary(1)	1		Myeloproliferative disorder(1001;0.0255)				GCTGATGCTTCATGGCAAGCT	0.527													5	33					0	0	1	0	0
OR6C68	403284	broad.mit.edu	37	12	55886309	55886309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:55886309G>A	uc010spo.1	+	1	163	c.163G>A	c.(163-165)GAT>AAT	p.D55N		NM_001005519	NP_001005519	A6NDL8	O6C68_HUMAN	olfactory receptor, family 6, subfamily C,	50	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CACCATGTTGGATCCCCACCT	0.383													7	61					0	0	1	0	0
OR10P1	121130	broad.mit.edu	37	12	56031272	56031272	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:56031272C>T	uc010spq.1	+	1	597	c.597C>T	c.(595-597)TCC>TCT	p.S199S		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						GCGAGATCTCCGTGATGACAG	0.547													5	85					0	0	1	0	0
METTL7B	196410	broad.mit.edu	37	12	56077729	56077729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:56077729G>A	uc010spr.1	+	2	840	c.631G>A	c.(631-633)GAT>AAT	p.D211N		NM_152637	NP_689850	Q6UX53	MET7B_HUMAN	methyltransferase like 7B precursor	211							methyltransferase activity				0						GACCTGGAAGGATCTTGAGAA	0.547													4	62					0	0	1	0	0
ITGA7	3679	broad.mit.edu	37	12	56088288	56088288	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:56088288G>A	uc001shh.2	-	17	2528	c.2308C>T	c.(2308-2310)CTT>TTT	p.L770F	ITGA7_uc001shg.2_Missense_Mutation_p.L766F|ITGA7_uc010sps.1_Missense_Mutation_p.L673F|ITGA7_uc009znw.2_Missense_Mutation_p.L13F|ITGA7_uc009znx.2_Missense_Mutation_p.L647F	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	810	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						GAGGTGCTAAGGATGAGGTAG	0.582													5	31					0	0	1	0	0
MMP19	4327	broad.mit.edu	37	12	56234926	56234926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:56234926G>A	uc001sib.2	-	3	389	c.268C>T	c.(268-270)CCC>TCC	p.P90S	MMP19_uc001sia.2_5'Flank|MMP19_uc001sid.2_RNA|MMP19_uc010spw.1_Missense_Mutation_p.P90S	NM_002429	NP_002420	Q99542	MMP19_HUMAN	matrix metalloproteinase 19 isoform rasi-1	90	Cysteine switch (By similarity).			P->V: Reduced autolysis rate.	angiogenesis|cell differentiation|collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)	1						TGGTTGAAGGGATCCTCTAGG	0.552													11	101					0	0	1	0	0
DGKA	1606	broad.mit.edu	37	12	56346536	56346536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:56346536G>A	uc001sij.2	+	21	2026	c.1762G>A	c.(1762-1764)GAT>AAT	p.D588N	DGKA_uc009zod.1_Missense_Mutation_p.D507N|DGKA_uc001sik.2_Missense_Mutation_p.D588N|DGKA_uc001sil.2_Missense_Mutation_p.D588N|DGKA_uc001sim.2_Missense_Mutation_p.D588N|DGKA_uc001sin.2_Missense_Mutation_p.D588N|DGKA_uc009zof.2_Missense_Mutation_p.D234N|DGKA_uc001sio.2_Missense_Mutation_p.D330N	NM_001345	NP_001336	P23743	DGKA_HUMAN	diacylglycerol kinase, alpha 80kDa	588					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			ovary(3)|pancreas(1)	4					Vitamin E(DB00163)	GAAACCGCTGGATCTGAGCAA	0.562													15	89					0	0	1	0	0
PAN2	9924	broad.mit.edu	37	12	56719165	56719165	+	Missense_Mutation	SNP	C	T	T	rs149179511	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:56719165C>T	uc001skx.2	-	9	1806	c.1433G>A	c.(1432-1434)CGA>CAA	p.R478Q	PAN2_uc001skw.2_5'Flank|PAN2_uc001skz.2_Missense_Mutation_p.R478Q|PAN2_uc001sky.2_Missense_Mutation_p.R478Q	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	478					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						TTCCTCTTCTCGTCCTACTGG	0.507													8	96					0	0	1	0	0
IL23A	51561	broad.mit.edu	37	12	56733224	56733224	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:56733224G>A	uc001sla.2	+	2	343	c.177G>A	c.(175-177)GAG>GAA	p.E59E		NM_016584	NP_057668	Q9NPF7	IL23A_HUMAN	interleukin 23, alpha subunit p19 precursor	59					defense response to Gram-negative bacterium|inflammatory response|innate immune response|negative regulation of interleukin-10 production|positive regulation of activated T cell proliferation|positive regulation of activation of JAK2 kinase activity|positive regulation of defense response to virus by host|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-17 production|positive regulation of memory T cell differentiation|positive regulation of natural killer cell proliferation|positive regulation of NF-kappaB import into nucleus|positive regulation of NK T cell activation|positive regulation of NK T cell proliferation|positive regulation of osteoclast differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat4 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|regulation of tyrosine phosphorylation of Stat1 protein|response to virus|tissue remodeling	interleukin-23 complex	cytokine activity				0						TAAGAGAAGAGGGAGATGAAG	0.498													3	36					0	0	1	0	0
TIMELESS	8914	broad.mit.edu	37	12	56822103	56822104	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:56822103_56822104GG>AA	uc001slf.2	-	13	1662_1663	c.1494_1495CC>TT	c.(1492-1497)TTCCTT>TTTTTT	p.L499F	TIMELESS_uc001slg.2_Missense_Mutation_p.L498F	NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	499					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						AGGTCACGAAGGAAAGAGCGGG	0.525													9	42					0	0	1	0	0
GLS2	27165	broad.mit.edu	37	12	56868870	56868870	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:56868870C>T	uc001slj.2	-	10	1233	c.954G>A	c.(952-954)GGG>GGA	p.G318G	GLS2_uc009zos.2_RNA|GLS2_uc001slk.2_Silent_p.G53G|GLS2_uc009zot.2_Intron	NM_013267	NP_037399	Q9UI32	GLSL_HUMAN	glutaminase 2 precursor	318					cellular amino acid biosynthetic process|glutamate secretion|glutamine metabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity|protein binding			ovary(1)|central_nervous_system(1)	2					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	AATTCCGATCCCCTGTTTCCT	0.478													10	158					0	0	1	0	0
GLS2	27165	broad.mit.edu	37	12	56874097	56874097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:56874097C>T	uc001slj.2	-	2	536	c.257G>A	c.(256-258)CGA>CAA	p.R86Q	GLS2_uc009zos.2_RNA|GLS2_uc001slk.2_5'UTR|GLS2_uc009zot.2_5'UTR	NM_013267	NP_037399	Q9UI32	GLSL_HUMAN	glutaminase 2 precursor	86					cellular amino acid biosynthetic process|glutamate secretion|glutamine metabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity|protein binding			ovary(1)|central_nervous_system(1)	2					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GATAGGGATTCGTTCCTGTCC	0.478													8	67					0	0	1	0	0
SDR9C7	121214	broad.mit.edu	37	12	57324215	57324215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:57324215C>T	uc010sqw.1	-	2	355	c.355G>A	c.(355-357)GAA>AAA	p.E119K		NM_148897	NP_683695	Q8NEX9	DR9C7_HUMAN	short chain dehydrogenase/reductase family 9C,	119						cytoplasm	binding|oxidoreductase activity			central_nervous_system(1)	1						GTCAGCCATTCGTTGGGACCA	0.557													8	30					0	0	1	0	0
GPR182	11318	broad.mit.edu	37	12	57389900	57389900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:57389900G>A	uc001smk.2	+	2	1001	c.907G>A	c.(907-909)GAT>AAT	p.D303N	RDH16_uc010sqx.1_Intron	NM_007264	NP_009195	O15218	GP182_HUMAN	G protein-coupled receptor 182	303	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(1)	1						CTTCTTCTATGATGTCATTGA	0.552													20	202					0	0	1	0	0
ZBTB39	9880	broad.mit.edu	37	12	57398520	57398520	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:57398520T>A	uc001sml.1	-	2	268	c.182A>T	c.(181-183)AAT>ATT	p.N61I	RDH16_uc010sqx.1_5'Flank	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	61	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						AAGCCCAGTATTCAGGAAGAG	0.552													18	128					0	0	1	0	0
STAC3	246329	broad.mit.edu	37	12	57638321	57638321	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:57638321G>T	uc001snp.2	-	9	1000	c.805C>A	c.(805-807)CCG>ACG	p.P269T	STAC3_uc009zpl.2_5'UTR|STAC3_uc001snq.2_Missense_Mutation_p.P230T|STAC3_uc010srm.1_Missense_Mutation_p.P83T	NM_145064	NP_659501	Q96MF2	STAC3_HUMAN	SH3 and cysteine rich domain 3	269	SH3 1.				intracellular signal transduction		identical protein binding|metal ion binding			ovary(2)|skin(1)	3						GCCTCTCACGGGAAATCCAGA	0.587													26	159					7.38237e-10	7.48654e-10	1	1	0
R3HDM2	22864	broad.mit.edu	37	12	57648645	57648645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:57648645G>A	uc009zpm.1	-	22	2877	c.2842C>T	c.(2842-2844)CGT>TGT	p.R948C	R3HDM2_uc010srn.1_Intron|R3HDM2_uc001snu.2_Missense_Mutation_p.R643C|R3HDM2_uc001snr.2_Missense_Mutation_p.R675C|R3HDM2_uc001sns.2_Missense_Mutation_p.R948C|R3HDM2_uc001snt.2_Missense_Mutation_p.R962C|R3HDM2_uc009zpn.1_Intron	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	948						nucleus	nucleic acid binding			ovary(2)	2						TTGTTGAGACGAAGGGAGGCA	0.567													5	69					0	0	1	0	0
R3HDM2	22864	broad.mit.edu	37	12	57651864	57651864	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:57651864G>A	uc009zpm.1	-	19	2351	c.2316C>T	c.(2314-2316)CCC>CCT	p.P772P	R3HDM2_uc010srn.1_RNA|R3HDM2_uc001snu.2_Silent_p.P467P|R3HDM2_uc001snr.2_Silent_p.P499P|R3HDM2_uc001sns.2_Silent_p.P772P|R3HDM2_uc001snt.2_Silent_p.P786P|R3HDM2_uc009zpn.1_Intron	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	772						nucleus	nucleic acid binding			ovary(2)	2						TGACAGGAGAGGGTGCTGGAG	0.577													4	20					0	0	1	0	0
INHBC	3626	broad.mit.edu	37	12	57828693	57828693	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:57828693C>T	uc001snv.1	+	1	151	c.24C>T	c.(22-24)GCC>GCT	p.A8A		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	8					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						TGCTTCTGGCCTTTCTCCTCC	0.602													5	30					0	0	1	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57872921	57872921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:57872921G>A	uc001sod.2	-	5	675	c.482C>T	c.(481-483)TCC>TTC	p.S161F	ARHGAP9_uc001snz.2_5'Flank|ARHGAP9_uc001soa.2_5'Flank|ARHGAP9_uc001sob.2_Missense_Mutation_p.S90F|ARHGAP9_uc001soc.2_Missense_Mutation_p.S90F|ARHGAP9_uc001soe.1_Missense_Mutation_p.S169F|ARHGAP9_uc010sro.1_Missense_Mutation_p.S90F	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	90					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			TGGACTCTGGGAAGGGATGGA	0.567													10	106					0	0	1	0	0
KIF5A	3798	broad.mit.edu	37	12	57957251	57957251	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:57957251C>T	uc001sor.1	+	2	367	c.159C>T	c.(157-159)TTC>TTT	p.F53F	KIF5A_uc010srr.1_Intron	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	53	Kinesin-motor.				blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						ACCGTGTATTCCCCCCAAACA	0.418													7	36					0	0	1	0	0
KIF5A	3798	broad.mit.edu	37	12	57957965	57957965	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:57957965C>T	uc001sor.1	+	4	574	c.366C>T	c.(364-366)TCC>TCT	p.S122S	KIF5A_uc010srr.1_Intron	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	122	Kinesin-motor.				blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						ACATCTACTCCATGGATGAGA	0.517													5	44					0	0	1	0	0
SLC26A10	65012	broad.mit.edu	37	12	58014116	58014116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:58014116C>T	uc001spe.2	+	1	424	c.113C>T	c.(112-114)TCT>TTT	p.S38F	uc001spc.2_5'Flank|SLC26A10_uc001spf.2_RNA	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	38						integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					CCATCCACTTCTATCCCAGGC	0.537													47	569					0	0	1	0	0
SLC26A10	65012	broad.mit.edu	37	12	58016868	58016868	+	Missense_Mutation	SNP	C	T	T	rs138048824		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:58016868C>T	uc001spe.2	+	7	1312	c.1001C>T	c.(1000-1002)TCG>TTG	p.S334L	SLC26A10_uc001spf.2_RNA|SLC26A10_uc009zpz.1_5'Flank	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	334						integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					TTTCCCAACTCGGCTACGCTG	0.547													16	186					0	0	1	0	0
AGAP2	116986	broad.mit.edu	37	12	58121770	58121770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:58121770C>T	uc001spq.2	-	15	2716	c.2716G>A	c.(2716-2718)GAG>AAG	p.E906K	AGAP2_uc001spo.1_5'Flank|AGAP2_uc001spp.2_Missense_Mutation_p.E905K|AGAP2_uc001spr.2_Missense_Mutation_p.E550K|LOC100130776_uc001sps.3_3'UTR	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	906	PH.				axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						ATCTGACTCTCGATGGCCTGG	0.562													11	128					0	0	1	0	0
CCT2	10576	broad.mit.edu	37	12	69983283	69983283	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:69983283C>T	uc001svb.1	+	7	559	c.465C>T	c.(463-465)TTC>TTT	p.F155F	CCT2_uc009zrm.1_RNA|CCT2_uc009zrn.1_Silent_p.F155F|CCT2_uc010stl.1_Silent_p.F108F	NM_006431	NP_006422	P78371	TCPB_HUMAN	chaperonin containing TCP1, subunit 2	155					'de novo' posttranslational protein folding	nucleus	ATP binding|unfolded protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(2;7.7e-106)|Breast(13;2.15e-06)|Esophageal squamous(21;0.187)		Epithelial(6;2.72e-18)|GBM - Glioblastoma multiforme(2;2.58e-10)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			AAGTTAAATTCCGTCAAGATT	0.303													4	25					0	0	1	0	0
BEST3	144453	broad.mit.edu	37	12	70049224	70049224	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:70049224C>T	uc001svg.2	-	10	1697	c.1470G>A	c.(1468-1470)GTG>GTA	p.V490V	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Silent_p.V277V|BEST3_uc010stm.1_Silent_p.V384V	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	490	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			GGGAAGTTCTCACACTGGACT	0.562													6	28					0	0	1	0	0
BEST3	144453	broad.mit.edu	37	12	70091511	70091511	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:70091511T>C	uc001svg.2	-	2	295	c.68A>G	c.(67-69)AAG>AGG	p.K23R	BEST3_uc001svd.1_Missense_Mutation_p.K23R|BEST3_uc001sve.1_Intron|BEST3_uc010stm.1_Intron|BEST3_uc001svh.2_Intron|BEST3_uc001svi.1_Intron	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	23	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			GCCTCTCCACTTGAGGAGTAA	0.353													3	66					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	71002983	71002983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:71002983C>T	uc001swb.3	-	2	221	c.191G>A	c.(190-192)GGG>GAG	p.G64E	PTPRB_uc010sto.1_Missense_Mutation_p.G64E|PTPRB_uc010stp.1_Missense_Mutation_p.G64E|PTPRB_uc001swc.3_Missense_Mutation_p.G282E|PTPRB_uc001swa.3_Missense_Mutation_p.G282E|PTPRB_uc001swd.3_Missense_Mutation_p.G281E|PTPRB_uc009zrr.1_Missense_Mutation_p.G161E|PTPRB_uc001swe.2_Missense_Mutation_p.G282E	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	64	Fibronectin type-III 1.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CAACGCGGCCCCCAGGGTGTC	0.488													9	39					0	0	1	0	0
PTPRR	5801	broad.mit.edu	37	12	71286542	71286542	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:71286542G>A	uc001swi.1	-	2	690	c.274C>T	c.(274-276)CCG>TCG	p.P92S		NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	92	Extracellular (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		TTGAGAGACGGGTCATATGCG	0.433													3	28					0	0	1	0	0
TSPAN8	7103	broad.mit.edu	37	12	71523182	71523182	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:71523182A>G	uc009zrt.1	-	7	751	c.589T>C	c.(589-591)TTC>CTC	p.F197L	TSPAN8_uc001swk.1_Missense_Mutation_p.F197L|TSPAN8_uc001swj.1_Missense_Mutation_p.F197L	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3	197	Extracellular (Potential).				protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			TCTTTTATGAAAGAAATACAG	0.259													5	52					0	0	1	0	0
KCNC2	3747	broad.mit.edu	37	12	75601755	75601755	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:75601755C>T	uc001sxg.1	-	2	553	c.9G>A	c.(7-9)AAG>AAA	p.K3K	KCNC2_uc009zry.2_Silent_p.K3K|KCNC2_uc001sxe.2_Silent_p.K3K|KCNC2_uc001sxf.2_Silent_p.K3K|KCNC2_uc010stw.1_Silent_p.K3K	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	3	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						TGTTCTCGATCTTGCCCATCT	0.577													8	37					0	0	1	0	0
PHLDA1	22822	broad.mit.edu	37	12	76425163	76425163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:76425163G>A	uc001sxu.2	-	1	394	c.359C>T	c.(358-360)CCC>CTC	p.P120L		NM_007350	NP_031376	Q8WV24	PHLA1_HUMAN	pleckstrin homology-like domain, family A,	120					apoptosis	cytoplasmic vesicle membrane|nucleolus|plasma membrane	protein binding				0		Colorectal(145;0.09)				GCGGGCCGGGGGCAGCAGCAG	0.731													4	21					0	0	1	0	0
OSBPL8	114882	broad.mit.edu	37	12	76783474	76783474	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:76783474A>T	uc001sye.1	-	12	1783	c.1303T>A	c.(1303-1305)TTC>ATC	p.F435I	OSBPL8_uc001syf.1_Missense_Mutation_p.F393I|OSBPL8_uc001syg.1_Missense_Mutation_p.F393I|OSBPL8_uc001syh.1_Missense_Mutation_p.F410I	NM_020841	NP_065892	Q9BZF1	OSBL8_HUMAN	oxysterol-binding protein-like protein 8 isoform	435					lipid transport		lipid binding			ovary(1)	1						TTATCCAGGAAAGAACGGGGT	0.358													6	60					0	0	1	0	0
MYF6	4618	broad.mit.edu	37	12	81101536	81101536	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:81101536T>G	uc001szf.1	+	1	91	c.38T>G	c.(37-39)TTC>TGC	p.F13C		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	13					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						TCCTATTTCTTCTACTTGGAT	0.493													7	75					0	0	1	0	0
MYF5	4617	broad.mit.edu	37	12	81111235	81111235	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:81111235C>T	uc001szg.2	+	1	528	c.393C>T	c.(391-393)ATC>ATT	p.I131I		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	131	Helix-loop-helix motif.				muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						TCCGCTACATCGAGAGCCTGC	0.592													9	83					0	0	1	0	0
ACSS3	79611	broad.mit.edu	37	12	81536910	81536910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:81536910C>T	uc001szl.1	+	5	896	c.805C>T	c.(805-807)CGT>TGT	p.R269C	ACSS3_uc001szm.1_Missense_Mutation_p.R268C	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	269						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GGCTCCCGGTCGTGACCTTGA	0.408													4	31					0	0	1	0	0
ACSS3	79611	broad.mit.edu	37	12	81536943	81536943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:81536943G>A	uc001szl.1	+	5	929	c.838G>A	c.(838-840)GCC>ACC	p.A280T	ACSS3_uc001szm.1_Missense_Mutation_p.A279T	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	280						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GATGGCAAAAGCCCAGTCACA	0.443													4	28					0	0	1	0	0
ACSS3	79611	broad.mit.edu	37	12	81647091	81647091	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:81647091C>T	uc001szl.1	+	14	1816	c.1725C>T	c.(1723-1725)ATC>ATT	p.I575I	ACSS3_uc001szm.1_Silent_p.I574I|ACSS3_uc001szn.1_Silent_p.I257I	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	575						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						TACAGTCAATCCTTTCCCATG	0.318													4	77					0	0	1	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85521614	85521614	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:85521614G>A	uc001tac.2	+	18	4123	c.4012G>A	c.(4012-4014)GCA>ACA	p.A1338T		NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1338	IQ 2.									ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TAATAGTATGGCAGCTGTGGT	0.393													4	37					0	0	1	0	0
RASSF9	9182	broad.mit.edu	37	12	86198863	86198863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:86198863C>T	uc001taf.1	-	2	1264	c.925G>A	c.(925-927)GAA>AAA	p.E309K		NM_005447	NP_005438	O75901	RASF9_HUMAN	Ras association (RalGDS/AF-6) domain family	309					endosome transport|protein targeting|signal transduction	cytosol|endosome|trans-Golgi network transport vesicle membrane	protein binding|transporter activity			ovary(1)	1						CTTTCCAGTTCACTTGCAGCT	0.373													15	149					0	0	1	0	0
RASSF9	9182	broad.mit.edu	37	12	86199418	86199418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:86199418G>A	uc001taf.1	-	2	709	c.370C>T	c.(370-372)CCT>TCT	p.P124S		NM_005447	NP_005438	O75901	RASF9_HUMAN	Ras association (RalGDS/AF-6) domain family	124					endosome transport|protein targeting|signal transduction	cytosol|endosome|trans-Golgi network transport vesicle membrane	protein binding|transporter activity			ovary(1)	1						CGCCACAAAGGAACTGGAAGA	0.438													8	126					0	0	1	0	0
DCN	1634	broad.mit.edu	37	12	91552125	91552125	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:91552125G>A	uc001tbs.2	-	3	580	c.486C>T	c.(484-486)ATC>ATT	p.I162I	DCN_uc001tbo.2_Intron|DCN_uc001tbp.2_Intron|DCN_uc001tbq.2_Intron|DCN_uc001tbr.2_Intron|DCN_uc001tbt.2_Silent_p.I162I|DCN_uc001tbu.2_Silent_p.I162I	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	162	LRR 4.				organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						GCACTTTGGTGATCTCATTCT	0.383													7	109					0	0	1	0	0
C12orf74	338809	broad.mit.edu	37	12	93100509	93100509	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:93100509C>T	uc001tch.1	+	2	332	c.102C>T	c.(100-102)CTC>CTT	p.L34L	C12orf74_uc001tci.2_Silent_p.L34L	NM_001037671	NP_001032760	Q32Q52	CL074_HUMAN	hypothetical protein LOC338809	34											0						AGGGGAGTCTCCTCCAGTTTG	0.612													4	36					0	0	1	0	0
PLXNC1	10154	broad.mit.edu	37	12	94642028	94642028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:94642028C>T	uc001tdc.2	+	14	2867	c.2618C>T	c.(2617-2619)TCC>TTC	p.S873F		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	873	Extracellular (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						TTCAACATTTCCAAAAAAGAC	0.338													3	18					0	0	1	0	0
TMCC3	57458	broad.mit.edu	37	12	94965340	94965340	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:94965340G>A	uc001tdj.2	-	4	1423	c.1305C>T	c.(1303-1305)TTC>TTT	p.F435F	TMCC3_uc001tdi.2_Silent_p.F404F	NM_020698	NP_065749	Q9ULS5	TMCC3_HUMAN	transmembrane and coiled-coil domain family 3	435	Helical; (Potential).					integral to membrane				ovary(1)|skin(1)	2						TGGGTGAGACGAACTTCGCGA	0.488													5	55					0	0	1	0	0
TMCC3	57458	broad.mit.edu	37	12	94975655	94975655	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:94975655C>T	uc001tdj.2	-	2	856	c.738G>A	c.(736-738)GTG>GTA	p.V246V	TMCC3_uc001tdi.2_Silent_p.V215V	NM_020698	NP_065749	Q9ULS5	TMCC3_HUMAN	transmembrane and coiled-coil domain family 3	246						integral to membrane				ovary(1)|skin(1)	2						TGGGTTTGTTCACGATGGTAG	0.557													7	54					0	0	1	0	0
TMCC3	57458	broad.mit.edu	37	12	94975869	94975869	+	Missense_Mutation	SNP	C	T	T	rs144591334		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:94975869C>T	uc001tdj.2	-	2	642	c.524G>A	c.(523-525)CGA>CAA	p.R175Q	TMCC3_uc001tdi.2_Missense_Mutation_p.R144Q	NM_020698	NP_065749	Q9ULS5	TMCC3_HUMAN	transmembrane and coiled-coil domain family 3	175						integral to membrane				ovary(1)|skin(1)	2						GGGGGCAGTTCGAGATTTCAC	0.498													5	97					0	0	1	0	0
MIR492	574449	broad.mit.edu	37	12	95228248	95228248	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:95228248G>A	hsa-mir-492|MI0003131	+			c.75G>A			uc001tdk.2_RNA																	0						GAGAACGCCAGGATTGTCCTG	0.547													3	28					0	0	1	0	0
FGD6	55785	broad.mit.edu	37	12	95603750	95603750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:95603750G>A	uc001tdp.3	-	2	1534	c.1310C>T	c.(1309-1311)TCG>TTG	p.S437L	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	437					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						CACAGCAAGCGACATACTAGA	0.393													9	51					0	0	1	0	0
USP44	84101	broad.mit.edu	37	12	95918458	95918458	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:95918458G>A	uc001teg.2	-	4	1875	c.1731C>T	c.(1729-1731)TTC>TTT	p.F577F	USP44_uc001teh.2_Silent_p.F577F|USP44_uc009zte.2_Silent_p.F574F	NM_001042403	NP_001035862	Q9H0E7	UBP44_HUMAN	ubiquitin thiolesterase 44	577					anaphase|cell division|mitosis|negative regulation of mitotic anaphase-promoting complex activity|protein deubiquitination|regulation of spindle checkpoint|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)|breast(1)|central_nervous_system(1)	3						CTACAGACCTGAATCGTTTGA	0.388													5	55					0	0	1	0	0
USP44	84101	broad.mit.edu	37	12	95927357	95927357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:95927357C>T	uc001teg.2	-	2	820	c.676G>A	c.(676-678)GAA>AAA	p.E226K	USP44_uc001teh.2_Missense_Mutation_p.E226K|USP44_uc009zte.2_Missense_Mutation_p.E223K	NM_001042403	NP_001035862	Q9H0E7	UBP44_HUMAN	ubiquitin thiolesterase 44	226					anaphase|cell division|mitosis|negative regulation of mitotic anaphase-promoting complex activity|protein deubiquitination|regulation of spindle checkpoint|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)|breast(1)|central_nervous_system(1)	3						GAAACTATTTCTATTATGGTC	0.408													5	37					0	0	1	0	0
NTN4	59277	broad.mit.edu	37	12	96077343	96077343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:96077343C>T	uc001tei.2	-	6	1774	c.1325G>A	c.(1324-1326)GGA>GAA	p.G442E	NTN4_uc009ztf.2_Missense_Mutation_p.G442E|NTN4_uc009ztg.2_Missense_Mutation_p.G405E	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	442	Laminin EGF-like 3.				axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						GCCATAGTCTCCGAAGCCCCA	0.597													6	38					0	0	1	0	0
NTN4	59277	broad.mit.edu	37	12	96180998	96180998	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:96180998G>A	uc001tei.2	-	2	753	c.304C>T	c.(304-306)CCT>TCT	p.P102S	NTN4_uc009ztf.2_Missense_Mutation_p.P102S|NTN4_uc009ztg.2_Missense_Mutation_p.P65S	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	102	Laminin N-terminal.				axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CATGTGCGAGGAAACCGGAAG	0.512													6	28					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97043765	97043765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:97043765C>T	uc001tet.1	+	2	140	c.62C>T	c.(61-63)TCT>TTT	p.S21F		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	21										skin(6)|ovary(1)	7						CAATCAGGTTCTAGTGCTAAA	0.338													3	31					0	0	1	0	0
SCYL2	55681	broad.mit.edu	37	12	100717320	100717320	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:100717320C>T	uc001thn.2	+	11	1463	c.1413C>T	c.(1411-1413)ATC>ATT	p.I471I	SCYL2_uc009ztw.1_Silent_p.I298I|SCYL2_uc001thm.1_Silent_p.I471I	NM_017988	NP_060458	Q6P3W7	SCYL2_HUMAN	SCY1-like 2 protein	471	HEAT.				endosome to lysosome transport|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of clathrin-mediated endocytosis|positive regulation of receptor internalization	clathrin-coated vesicle|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|protein kinase activity|receptor binding			lung(3)|ovary(2)|skin(1)	6						GTCTAAACATCATTCCAACCT	0.308													4	34					0	0	1	0	0
SLC17A8	246213	broad.mit.edu	37	12	100796395	100796395	+	Silent	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:100796395A>C	uc010svi.1	+	8	1238	c.925A>C	c.(925-927)AGA>CGA	p.R309R	SLC17A8_uc009ztx.2_Intron	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	309	Cytoplasmic (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						CCCATGGAAAAGATTTTTCAC	0.338													3	40					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101368623	101368623	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:101368623G>A	uc010svm.1	+	7	1130	c.558G>A	c.(556-558)AGG>AGA	p.R186R	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Silent_p.R151R|ANO4_uc001thx.2_Silent_p.R186R	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	186	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						GTTCTTCCAGGAGAAAAATCT	0.468										HNSCC(74;0.22)			4	46					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101381342	101381342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:101381342C>T	uc010svm.1	+	8	1200	c.628C>T	c.(628-630)CGG>TGG	p.R210W	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.R175W|ANO4_uc001thx.2_Missense_Mutation_p.R210W	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	210	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AAGCAGGTTTCGGAGATGGTT	0.507										HNSCC(74;0.22)	OREG0022059	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	118					0	0	1	0	0
SLC5A8	160728	broad.mit.edu	37	12	101603327	101603327	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:101603327C>T	uc001thz.3	-	1	690	c.300G>A	c.(298-300)GCG>GCA	p.A100A		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	100	Helical; (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						GGAAGACCTCCGCGCTGATGA	0.597													3	13					0	0	1	0	0
UTP20	27340	broad.mit.edu	37	12	101693824	101693824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:101693824G>A	uc001tia.1	+	14	1816	c.1660G>A	c.(1660-1662)GGA>AGA	p.G554R		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	554					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						TGTTGACAAAGGAAGCTTTGG	0.418													5	101					0	0	1	0	0
SPIC	121599	broad.mit.edu	37	12	101880303	101880303	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:101880303G>A	uc001tid.2	+	6	660	c.501G>A	c.(499-501)CAG>CAA	p.Q167Q	SPIC_uc009zua.2_Silent_p.Q42Q|SPIC_uc010svp.1_Silent_p.Q166Q	NM_152323	NP_689536	Q8N5J4	SPIC_HUMAN	Spi-C transcription factor (Spi-1/PU.1 related)	167	ETS.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						TGACTTACCAGAAAATGGCCA	0.428													6	40					0	0	1	0	0
MYBPC1	4604	broad.mit.edu	37	12	102038463	102038463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:102038463C>T	uc001tii.2	+	10	881	c.779C>T	c.(778-780)CCT>CTT	p.P260L	MYBPC1_uc001tif.1_Missense_Mutation_p.P273L|MYBPC1_uc001tig.2_Missense_Mutation_p.P285L|MYBPC1_uc010svq.1_Missense_Mutation_p.P247L|MYBPC1_uc001tih.2_Missense_Mutation_p.P285L|MYBPC1_uc001tij.2_Missense_Mutation_p.P260L|MYBPC1_uc010svr.1_Missense_Mutation_p.P260L|MYBPC1_uc010svs.1_Missense_Mutation_p.P260L|MYBPC1_uc010svt.1_Missense_Mutation_p.P248L|MYBPC1_uc010svu.1_Missense_Mutation_p.P241L|MYBPC1_uc001tik.2_Missense_Mutation_p.P234L	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	260	Ig-like C2-type 2.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						ATTCTTGATCCTGCATATCAG	0.348													3	25					0	0	1	0	0
MYBPC1	4604	broad.mit.edu	37	12	102056249	102056249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:102056249G>A	uc001tii.2	+	19	2173	c.2071G>A	c.(2071-2073)GAG>AAG	p.E691K	MYBPC1_uc001tig.2_Missense_Mutation_p.E716K|MYBPC1_uc010svq.1_Missense_Mutation_p.E678K|MYBPC1_uc001tih.2_Missense_Mutation_p.E716K|MYBPC1_uc001tij.2_Missense_Mutation_p.E691K|MYBPC1_uc010svr.1_Missense_Mutation_p.E691K|MYBPC1_uc010svs.1_Missense_Mutation_p.E691K|MYBPC1_uc010svt.1_Missense_Mutation_p.E679K|MYBPC1_uc010svu.1_Missense_Mutation_p.E672K|MYBPC1_uc001tik.2_Missense_Mutation_p.E665K	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	691	Fibronectin type-III 1.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						TGTGGCCTATGAGGTCCGCAT	0.468													6	63					0	0	1	0	0
MYBPC1	4604	broad.mit.edu	37	12	102071046	102071046	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:102071046A>G	uc001tii.2	+	26	3064	c.2962A>G	c.(2962-2964)ACC>GCC	p.T988A	MYBPC1_uc001tig.2_Missense_Mutation_p.T995A|MYBPC1_uc010svq.1_Missense_Mutation_p.T957A|MYBPC1_uc001tih.2_Missense_Mutation_p.T995A|MYBPC1_uc001tij.2_Missense_Mutation_p.T970A|MYBPC1_uc010svr.1_Missense_Mutation_p.T970A|MYBPC1_uc010svs.1_Missense_Mutation_p.T988A|MYBPC1_uc010svt.1_Missense_Mutation_p.T958A|MYBPC1_uc010svu.1_Missense_Mutation_p.T951A|MYBPC1_uc001tik.2_Missense_Mutation_p.T944A|MYBPC1_uc001til.2_Missense_Mutation_p.T13A|MYBPC1_uc001tim.2_Missense_Mutation_p.T13A	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	988	Fibronectin type-III 3.			YHRTSATI -> IIEPVPH (in Ref. 1; CAA46987).	cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						TTATCATCGAACCAGTGCCAC	0.363													2	17					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104071241	104071241	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:104071241T>A	uc001tjw.2	+	25	2843	c.2657T>A	c.(2656-2658)ATC>AAC	p.I886N		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	886	Extracellular (Potential).|EGF-like 8.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GCAGAATGCATCAAAACTGGC	0.507													9	77					0	0	1	0	0
NT5DC3	51559	broad.mit.edu	37	12	104190780	104190780	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:104190780G>A	uc010swe.1	-	6	686	c.645C>T	c.(643-645)TTC>TTT	p.F215F		NM_001031701	NP_001026871	Q86UY8	NT5D3_HUMAN	5'-nucleotidase domain containing 3	215							hydrolase activity|metal ion binding			ovary(2)|skin(1)	3						AGATGTCCATGAACTGCTTCA	0.522													5	46					0	0	1	0	0
NT5DC3	51559	broad.mit.edu	37	12	104190803	104190803	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:104190803G>A	uc010swe.1	-	6	663	c.622C>T	c.(622-624)CAT>TAT	p.H208Y		NM_001031701	NP_001026871	Q86UY8	NT5D3_HUMAN	5'-nucleotidase domain containing 3	208							hydrolase activity|metal ion binding			ovary(2)|skin(1)	3						GTGTTTCCATGAGAGCTCTGC	0.527													11	36					0	0	1	0	0
HCFC2	29915	broad.mit.edu	37	12	104476364	104476364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:104476364C>T	uc001tkj.3	+	6	957	c.854C>T	c.(853-855)TCA>TTA	p.S285L	HCFC2_uc009zul.2_RNA	NM_013320	NP_037452	Q9Y5Z7	HCFC2_HUMAN	host cell factor C2	285	Kelch 4.				regulation of transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus	transcription coactivator activity			ovary(2)|central_nervous_system(1)	3						TGTACCAGTTCATTTTCTTAC	0.328													4	19					0	0	1	0	0
TCP11L2	255394	broad.mit.edu	37	12	106729506	106729506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:106729506G>A	uc001tln.2	+	7	1036	c.862G>A	c.(862-864)GAA>AAA	p.E288K		NM_152772	NP_689985	Q8N4U5	T11L2_HUMAN	t-complex 11 (mouse) like 2	288										ovary(3)	3						TCCTGGGGCCGAAAATACCTC	0.383													5	27					0	0	1	0	0
TCP11L2	255394	broad.mit.edu	37	12	106729826	106729826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:106729826G>A	uc001tln.2	+	8	1151	c.977G>A	c.(976-978)GGA>GAA	p.G326E		NM_152772	NP_689985	Q8N4U5	T11L2_HUMAN	t-complex 11 (mouse) like 2	326										ovary(3)	3						ATGACAGATGGAGCACGTCTT	0.353													3	13					0	0	1	0	0
BTBD11	121551	broad.mit.edu	37	12	108029148	108029148	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:108029148G>A	uc001tmk.1	+	12	3239	c.2718G>A	c.(2716-2718)CGG>CGA	p.R906R	BTBD11_uc009zut.1_Silent_p.R787R|BTBD11_uc001tmj.2_Silent_p.R906R|BTBD11_uc001tml.1_Silent_p.R443R|BTBD11_uc001tmm.1_5'UTR	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	906						integral to membrane	DNA binding			skin(2)|ovary(1)	3						AAATCAAACGGAAACAGACCT	0.527													4	45					0	0	1	0	0
TMEM119	338773	broad.mit.edu	37	12	108985577	108985577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:108985577C>T	uc001tng.2	-	2	746	c.583G>A	c.(583-585)GAC>AAC	p.D195N	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	195	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						CTGGCTCCGTCCCCACCGCCC	0.687													7	43					0	0	1	0	0
UNG	7374	broad.mit.edu	37	12	109540670	109540670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:109540670C>T	uc001tnz.1	+	5	630	c.560C>T	c.(559-561)TCT>TTT	p.S187F	UNG_uc001toa.1_Missense_Mutation_p.S178F	NM_080911	NP_550433	P13051	UNG_HUMAN	uracil-DNA glycosylase isoform UNG2	187					base-excision repair|interspecies interaction between organisms	mitochondrion|nucleus	protein binding|uracil DNA N-glycosylase activity			lung(1)|central_nervous_system(1)	2						AAAGAGTTGTCTACAGACATA	0.363								BER_DNA_glycosylases	Immune_Deficiency_with_Hyper-IgM				5	59					0	0	1	0	0
ACACB	32	broad.mit.edu	37	12	109684049	109684049	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:109684049C>T	uc001tob.2	+	39	5486	c.5367C>T	c.(5365-5367)ATC>ATT	p.I1789I	ACACB_uc001toc.2_Silent_p.I1789I|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Silent_p.I455I	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1789					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	GGGATGTGATCGTCATCGGCA	0.552													9	92					0	0	1	0	0
ACACB	32	broad.mit.edu	37	12	109684074	109684074	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:109684074C>T	uc001tob.2	+	39	5511	c.5392C>T	c.(5392-5394)CGC>TGC	p.R1798C	ACACB_uc001toc.2_Missense_Mutation_p.R1798C|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Missense_Mutation_p.R464C	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1798					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	CATCACCTTTCGCATTGGATC	0.567													8	92					0	0	1	0	0
MYO1H	283446	broad.mit.edu	37	12	109826556	109826556	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:109826556C>T	uc010sxn.1	+	1	33	c.33C>T	c.(31-33)GTC>GTT	p.V11V		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:Variant_position_missing_in_B4DNW6_after_alignment						myosin complex	motor activity				0						GGGACAAGGTCGGGGTTCAGG	0.522													17	132					0	0	1	0	0
UBE3B	89910	broad.mit.edu	37	12	109926464	109926464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:109926464C>T	uc001top.2	+	7	1138	c.535C>T	c.(535-537)CGG>TGG	p.R179W	UBE3B_uc001toq.2_Missense_Mutation_p.R179W|UBE3B_uc001tol.1_Missense_Mutation_p.R179W|UBE3B_uc001tom.2_Missense_Mutation_p.R179W|UBE3B_uc001ton.2_Missense_Mutation_p.R179W|UBE3B_uc001too.1_RNA|UBE3B_uc009zvj.1_Missense_Mutation_p.R179W|UBE3B_uc001tor.2_Missense_Mutation_p.R179W	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	179					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						GAAAATTCTTCGGGGAAAAGG	0.448													8	94					0	0	1	0	0
UBE3B	89910	broad.mit.edu	37	12	109971273	109971273	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:109971273C>T	uc001top.2	+	27	3528	c.2925C>T	c.(2923-2925)TTC>TTT	p.F975F	UBE3B_uc001toq.2_Silent_p.F975F|UBE3B_uc001tos.2_Silent_p.F402F|UBE3B_uc001tot.2_Silent_p.F93F|UBE3B_uc010sxp.1_Silent_p.F93F	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	975	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						TGTTGCAGTTCGTGACCAGCT	0.617													8	112					0	0	1	0	0
TRPV4	59341	broad.mit.edu	37	12	110232263	110232264	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:110232263_110232264GG>AA	uc001tpj.1	-	7	1456_1457	c.1361_1362CC>TT	c.(1360-1362)CCC>CTT	p.P454L	TRPV4_uc001tpg.1_Missense_Mutation_p.P420L|TRPV4_uc001tph.1_Missense_Mutation_p.P407L|TRPV4_uc001tpi.1_Missense_Mutation_p.P347L|TRPV4_uc001tpk.1_Missense_Mutation_p.P454L|TRPV4_uc001tpl.1_Missense_Mutation_p.P394L	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	454	Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GTTCATTGATGGGCTCCACAGC	0.614													7	94					0	0	1	0	0
ATP2A2	488	broad.mit.edu	37	12	110778717	110778717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:110778717C>T	uc001tqk.3	+	14	2578	c.2015C>T	c.(2014-2016)GCC>GTC	p.A672V	ATP2A2_uc001tql.3_Missense_Mutation_p.A672V|ATP2A2_uc010sxy.1_Missense_Mutation_p.A645V	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	672	Cytoplasmic (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						TGCCTGAACGCCCGCTGTTTT	0.507													4	31					0	0	1	0	0
MYL2	4633	broad.mit.edu	37	12	111348965	111348965	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:111348965G>A	uc001try.3	-	7	488	c.417C>T	c.(415-417)TTC>TTT	p.F139F	MYL2_uc001trx.3_Silent_p.F120F	NM_000432	NP_000423	P10916	MLRV_HUMAN	slow cardiac myosin regulatory light chain 2	139	EF-hand 3.				cardiac myofibril assembly|heart contraction|muscle filament sliding|negative regulation of cell growth|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	cytosol|myosin complex|sarcomere	actin monomer binding|calcium ion binding|myosin heavy chain binding|structural constituent of muscle			ovary(1)	1						GGAAGGCGGCGAACATCTGGT	0.617													8	94					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111785406	111785406	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:111785406C>T	uc001tsa.1	+	22	3891	c.3738C>T	c.(3736-3738)ATC>ATT	p.I1246I		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1246						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GTCCTGGAATCCTACCGCCAG	0.652													5	80					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111785569	111785569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:111785569G>A	uc001tsa.1	+	22	4054	c.3901G>A	c.(3901-3903)GAA>AAA	p.E1301K		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1301						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GATCAAGCAGGAACAGATGGA	0.612													5	27					0	0	1	0	0
ACAD10	80724	broad.mit.edu	37	12	112171746	112171746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:112171746C>T	uc001tsq.2	+	11	1614	c.1414C>T	c.(1414-1416)CAT>TAT	p.H472Y	ACAD10_uc001tsp.2_Missense_Mutation_p.H472Y|ACAD10_uc009zvx.2_Missense_Mutation_p.H503Y|ACAD10_uc001tss.1_RNA	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	472							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						CCTGGTGTTTCATCCAGAAGA	0.507													9	76					0	0	1	0	0
ALDH2	217	broad.mit.edu	37	12	112235944	112235944	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:112235944G>A	uc001tst.2	+	10	1587	c.1146G>A	c.(1144-1146)GCG>GCA	p.A382A	ALDH2_uc010syi.1_Silent_p.A335A|ALDH2_uc009zvy.2_Silent_p.A306A	NM_000690	NP_000681	P05091	ALDH2_HUMAN	mitochondrial aldehyde dehydrogenase 2	382					carbohydrate metabolic process|ethanol oxidation|neurotransmitter biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase|electron carrier activity			skin(2)|ovary(1)|central_nervous_system(1)	4					Disulfiram(DB00822)|Guanidine(DB00536)|NADH(DB00157)|Nitroglycerin(DB00727)	AAGAGGGGGCGAAGCTGCTGT	0.547			T	HMGA2	leiomyoma								5	38					0	0	1	0	0
RPL6	6128	broad.mit.edu	37	12	112843768	112843768	+	Silent	SNP	G	A	A	rs150735821	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:112843768G>A	uc001ttu.2	-	6	832	c.603C>T	c.(601-603)ATC>ATT	p.I201I	RPL6_uc001ttv.2_Silent_p.I201I	NM_001024662	NP_001019833	Q02878	RL6_HUMAN	ribosomal protein L6	201				LNRVPLRRTHQKFVIATSTKIDISN -> SIEFLYEEHTRN LSLPLQPKSISAI (in Ref. 5; AAB30819).	endocrine pancreas development|regulation of transcription, DNA-dependent|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	DNA binding|RNA binding|structural constituent of ribosome			large_intestine(1)	1						TGCTGATATCGATTTTGGTTG	0.423													4	42					0	0	1	0	0
OAS2	4939	broad.mit.edu	37	12	113436179	113436179	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:113436179G>A	uc001tuj.2	+	5	1112	c.972G>A	c.(970-972)CTG>CTA	p.L324L	OAS2_uc001tui.1_Silent_p.L324L	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	324	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						CTCCCAACCTGGATAATGAGT	0.453													4	68					0	0	1	0	0
OAS2	4939	broad.mit.edu	37	12	113444379	113444379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:113444379C>T	uc001tuj.2	+	8	1770	c.1630C>T	c.(1630-1632)CGC>TGC	p.R544C	OAS2_uc001tui.1_Missense_Mutation_p.R544C	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	544	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						GGATTTAATTCGCCTGGTGAA	0.473													7	86					0	0	1	0	0
DTX1	1840	broad.mit.edu	37	12	113532927	113532927	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:113532927C>T	uc001tuk.1	+	7	1803	c.1467C>T	c.(1465-1467)TTC>TTT	p.F489F		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	489					negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						AGATGGAGTTCCACCTCATCC	0.652													7	58					0	0	1	0	0
RASAL1	8437	broad.mit.edu	37	12	113556998	113556998	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:113556998G>A	uc001tum.1	-	8	870	c.577C>T	c.(577-579)CCG>TCG	p.P193S	RASAL1_uc010syp.1_Missense_Mutation_p.P193S|RASAL1_uc001tul.2_Missense_Mutation_p.P193S|RASAL1_uc001tun.1_Missense_Mutation_p.P193S|RASAL1_uc010syq.1_Missense_Mutation_p.P193S|RASAL1_uc001tuo.3_Missense_Mutation_p.P193S|RASAL1_uc010syr.1_Missense_Mutation_p.P193S	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	193	C2 2.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						AGTGGGGACGGGGCACCTGGC	0.597													5	73					0	0	1	0	0
RBM19	9904	broad.mit.edu	37	12	114358414	114358414	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:114358414A>G	uc009zwi.2	-	19	2529	c.2385_splice	c.e19+1	p.Q795_splice	RBM19_uc001tvn.3_Splice_Site_p.Q795_splice|RBM19_uc001tvm.2_Splice_Site_p.Q795_splice	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19						multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					tcTTCACTTTACCTGGAGCTG	0.279													20	269					0	0	1	0	0
RBM19	9904	broad.mit.edu	37	12	114385141	114385141	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:114385141G>A	uc009zwi.2	-	11	1549	c.1405C>T	c.(1405-1407)CAG>TAG	p.Q469*	RBM19_uc001tvn.3_Nonsense_Mutation_p.Q469*|RBM19_uc001tvm.2_Nonsense_Mutation_p.Q469*	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	469	RRM 3.				multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					GGCCTCACCTGGAATACCTGC	0.542													7	55					0	0	1	0	0
TBX3	6926	broad.mit.edu	37	12	115120642	115120642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:115120642C>T	uc001tvt.1	-	1	1328	c.364G>A	c.(364-366)GAG>AAG	p.E122K	TBX3_uc001tvu.1_Missense_Mutation_p.E122K|TBX3_uc010syw.1_Missense_Mutation_p.E122K	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2	122	T-box; first part.				anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		ATGACCATCTCGGTGCCCCGC	0.542													8	82					0	0	1	0	0
MED13L	23389	broad.mit.edu	37	12	116434436	116434436	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:116434436G>A	uc001tvw.2	-	16	2896	c.2841C>T	c.(2839-2841)TCC>TCT	p.S947S		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	947					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		CAAACATGGAGGATCCCACAA	0.448													9	22					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117691489	117691489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:117691489C>T	uc001twm.1	-	17	3288	c.2602G>A	c.(2602-2604)GAC>AAC	p.D868N	NOS1_uc001twn.1_Missense_Mutation_p.D72N	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	868	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TCTCTGAGGTCGGGCCCATCG	0.562													5	69					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117914318	117914318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:117914318C>T	uc001two.2	-	17	2501	c.2446G>A	c.(2446-2448)GAG>AAG	p.E816K		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	845	Protein kinase.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTATCCTCCTCTGTGTCGGGG	0.612													3	7					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117923469	117923469	+	Silent	SNP	G	A	A	rs75821910	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:117923469G>A	uc001two.2	-	15	2215	c.2160C>T	c.(2158-2160)TCC>TCT	p.S720S		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	749	Protein kinase.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCCTCACAACGGAATAGAGCG	0.448													6	58					0	0	1	0	0
SRRM4	84530	broad.mit.edu	37	12	119554781	119554781	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:119554781G>A	uc001txa.1	+	4	697	c.405G>A	c.(403-405)AAG>AAA	p.K135K		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	135	Ser-rich.|Lys-rich.				cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						AGAAAAAGAAGAAGAAAAGTT	0.488													4	34					0	0	1	0	0
CIT	11113	broad.mit.edu	37	12	120168404	120168404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:120168404G>A	uc001txi.1	-	26	3309	c.3256C>T	c.(3256-3258)CGC>TGC	p.R1086C	CIT_uc001txh.1_Missense_Mutation_p.R620C|CIT_uc001txj.1_Missense_Mutation_p.R1128C	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1086	Potential.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		ACCACCTGGCGAGACTCGGTG	0.597													5	31					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120582578	120582578	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:120582578G>A	uc001txo.2	-	41	5230	c.5217C>T	c.(5215-5217)ATC>ATT	p.I1739I		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1739					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTGTAGCCACGATTTCTGGCA	0.507													15	167					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120593413	120593413	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:120593413G>A	uc001txo.2	-	29	3436	c.3423C>T	c.(3421-3423)ATC>ATT	p.I1141I		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1141					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCAGCTTCCGGATCTCCTCCT	0.522													7	89					0	0	1	0	0
RPLP0	6175	broad.mit.edu	37	12	120636466	120636466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:120636466G>A	uc001txp.2	-	6	779	c.542C>T	c.(541-543)TCC>TTC	p.S181F	RPLP0_uc001txq.2_Missense_Mutation_p.S181F|RPLP0_uc001txr.2_Intron|uc001txs.1_5'Flank	NM_053275	NP_444505	P05388	RLA0_HUMAN	ribosomal protein P0	181					endocrine pancreas development|interspecies interaction between organisms|ribosome biogenesis|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleus	protein binding|RNA binding|structural constituent of ribosome			ovary(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGAGAAGGGGGAGATGTTGAG	0.522													5	53					0	0	1	0	0
SIRT4	23409	broad.mit.edu	37	12	120750397	120750397	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:120750397C>T	uc001tyc.2	+	3	656	c.636C>T	c.(634-636)GTC>GTT	p.V212V		NM_012240	NP_036372	Q9Y6E7	SIRT4_HUMAN	sirtuin 4	212	Deacetylase sirtuin-type.				chromatin silencing|negative regulation of insulin secretion|protein ADP-ribosylation|protein deacetylation	mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|protein binding|zinc ion binding				0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AGGAGCAAGTCCGGAGCTTTC	0.552													6	34					0	0	1	0	0
SPPL3	121665	broad.mit.edu	37	12	121206241	121206241	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:121206241G>A	uc001tzd.2	-	8	1141	c.660C>T	c.(658-660)GCC>GCT	p.A220A	SPPL3_uc009zwz.2_Silent_p.A213A|SPPL3_uc001tzc.2_Silent_p.A50A	NM_139015	NP_620584	Q8TCT6	PSL4_HUMAN	signal peptide peptidase 3	221						integral to membrane	aspartic-type endopeptidase activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CCGGCTGAGTGGCCACCTTCA	0.542													14	112					0	0	1	0	0
OASL	8638	broad.mit.edu	37	12	121465519	121465519	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:121465519A>T	uc001tzj.1	-	4	765	c.759T>A	c.(757-759)AAT>AAA	p.N253K	OASL_uc001tzk.1_Intron	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	253					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CCAACATGAAATTCTCGTCTT	0.483													34	493					0	0	1	0	0
CAMKK2	10645	broad.mit.edu	37	12	121691199	121691199	+	Silent	SNP	G	A	A	rs149343557		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:121691199G>A	uc001tzu.2	-	10	1108	c.984C>T	c.(982-984)ATC>ATT	p.I328I	CAMKK2_uc001tzt.2_Silent_p.I328I|CAMKK2_uc001tzv.2_Silent_p.I328I|CAMKK2_uc001tzw.2_Silent_p.I328I|CAMKK2_uc001tzx.2_Silent_p.I328I|CAMKK2_uc001tzy.2_Silent_p.I328I|CAMKK2_uc001tzz.1_Silent_p.I115I|CAMKK2_uc001uaa.1_Silent_p.I328I|CAMKK2_uc001uab.2_Silent_p.I328I|CAMKK2_uc001uac.2_Silent_p.I328I	NM_006549	NP_006540	Q96RR4	KKCC2_HUMAN	calcium/calmodulin-dependent protein kinase	328	Protein kinase.				calcium-mediated signaling|MAPKKK cascade|positive regulation of transcription, DNA-dependent|protein autophosphorylation|regulation of protein kinase activity	cytoplasm	ATP binding|calcium ion binding|calmodulin binding|calmodulin-dependent protein kinase activity|protein tyrosine kinase activity			lung(1)|large_intestine(1)|stomach(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CAAAGTCAGCGATCTTGATGT	0.567													37	457					0	0	1	0	0
HPD	3242	broad.mit.edu	37	12	122294236	122294236	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:122294236G>A	uc001ubj.2	-	6	358	c.318C>T	c.(316-318)ATC>ATT	p.I106I	HPD_uc001ubk.2_Silent_p.I67I	NM_002150	NP_002141	P32754	HPPD_HUMAN	4-hydroxyphenylpyruvate dioxygenase	106					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	4-hydroxyphenylpyruvate dioxygenase activity|metal ion binding				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000105)|Epithelial(86;0.000352)|BRCA - Breast invasive adenocarcinoma(302;0.225)	Nitisinone(DB00348)	TTACCTGCACGATGTAGTCAC	0.582													8	55					0	0	1	0	0
WDR66	144406	broad.mit.edu	37	12	122439469	122439469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:122439469G>A	uc009zxk.2	+	21	3444	c.3302G>A	c.(3301-3303)GGA>GAA	p.G1101E		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	1101							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		AATCCCGAGGGATGGAAATCC	0.498													7	68					0	0	1	0	0
MLXIP	22877	broad.mit.edu	37	12	122618423	122618423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:122618423C>T	uc001ubq.2	+	9	1621	c.1621C>T	c.(1621-1623)CCC>TCC	p.P541S	MLXIP_uc001ubr.2_Missense_Mutation_p.P292S|MLXIP_uc001ubs.1_Missense_Mutation_p.P148S|MLXIP_uc001ubt.2_Missense_Mutation_p.P148S	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	541					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		TTTTGTGCACCCCAAACCTGT	0.607													3	13					0	0	1	0	0
LRRC43	254050	broad.mit.edu	37	12	122676082	122676082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:122676082G>A	uc009zxm.2	+	6	1082	c.1057G>A	c.(1057-1059)GAA>AAA	p.E353K	LRRC43_uc001ubw.3_Missense_Mutation_p.E168K|LRRC43_uc009zxn.2_Missense_Mutation_p.E114K	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	353	Glu-rich.										0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		TGAAGAAGGCGAAATGAATGA	0.552											OREG0022219	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	76					0	0	1	0	0
LRRC43	254050	broad.mit.edu	37	12	122685385	122685385	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:122685385C>T	uc009zxm.2	+	10	1738	c.1713C>T	c.(1711-1713)ATC>ATT	p.I571I	LRRC43_uc001ubw.3_Silent_p.I386I|LRRC43_uc009zxn.2_Silent_p.I332I|B3GNT4_uc001ubx.2_5'Flank|B3GNT4_uc001uby.2_5'Flank	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	571											0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		GCCTGGTGATCCTGGAGCCCC	0.662													6	63					0	0	1	0	0
KNTC1	9735	broad.mit.edu	37	12	123087242	123087242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:123087242C>T	uc001ucv.2	+	46	4943	c.4780C>T	c.(4780-4782)CAC>TAC	p.H1594Y	KNTC1_uc010taf.1_Intron	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	1594					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		ACTGCCTTTTCACCTGATATT	0.363													7	42					0	0	1	0	0
GPR109B	8843	broad.mit.edu	37	12	123200792	123200792	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:123200792T>C	uc001ucy.3	-	1	648	c.493A>G	c.(493-495)AAG>GAG	p.K165E	GPR81_uc001ucw.1_Intron	NM_006018	NP_006009	P49019	HCAR3_HUMAN	G protein-coupled receptor 109B	165	Extracellular (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	AGCAACTTCTTCTTCAGGAGG	0.522													3	50					0	0	1	0	0
GPR109B	8843	broad.mit.edu	37	12	123200842	123200842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:123200842G>A	uc001ucy.3	-	1	598	c.443C>T	c.(442-444)TCT>TTT	p.S148F	GPR81_uc001ucw.1_Intron	NM_006018	NP_006009	P49019	HCAR3_HUMAN	G protein-coupled receptor 109B	148	Helical; Name=4; (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	CAGAAGGCAAGAGATGATGGC	0.527													4	64					0	0	1	0	0
GPR109B	8843	broad.mit.edu	37	12	123201215	123201215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:123201215C>T	uc001ucy.3	-	1	225	c.70G>A	c.(70-72)GAC>AAC	p.D24N	GPR81_uc001ucw.1_Intron	NM_006018	NP_006009	P49019	HCAR3_HUMAN	G protein-coupled receptor 109B	24	Extracellular (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	GCAATGAAGTCATCTCGGAAC	0.517													6	31					0	0	1	0	0
GPR81	27198	broad.mit.edu	37	12	123213939	123213939	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:123213939C>T	uc001ucz.2	-	1	1191	c.948G>A	c.(946-948)TCG>TCA	p.S316S	GPR81_uc001ucw.1_RNA	NM_032554	NP_115943	Q9BXC0	HCAR1_HUMAN	G protein-coupled receptor 81	316	Cytoplasmic (Potential).				response to estradiol stimulus	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.14e-05)|Epithelial(86;3.25e-05)|BRCA - Breast invasive adenocarcinoma(302;0.197)		GACCGAGGTTCGAAATTGGCA	0.488													13	115					0	0	1	0	0
PITPNM2	57605	broad.mit.edu	37	12	123498562	123498562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:123498562C>T	uc001uej.1	-	3	245	c.106G>A	c.(106-108)GAA>AAA	p.E36K	PITPNM2_uc001uek.1_Missense_Mutation_p.E36K|PITPNM2_uc009zxu.1_Missense_Mutation_p.E36K	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	36					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		CCGCTGCCTTCGCCATATGTC	0.582													6	82					0	0	1	0	0
EIF2B1	1967	broad.mit.edu	37	12	124118248	124118248	+	Splice_Site	SNP	C	T	T	rs11572912		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:124118248C>T	uc001ufm.2	-	1	1	c.-142_splice	c.e1-1		GTF2H3_uc001ufo.1_5'Flank|GTF2H3_uc010tau.1_5'Flank|EIF2B1_uc001ufn.2_Splice_Site|EIF2B1_uc010tat.1_Splice_Site	NM_001414	NP_001405	Q14232	EI2BA_HUMAN	eukaryotic translation initiation factor 2B,						cellular response to stimulus|oligodendrocyte development|regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex|membrane fraction|plasma membrane	protein binding|translation initiation factor activity				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.67e-05)|Epithelial(86;0.000353)|all cancers(50;0.00489)		CCGTACCCCTCTTCCGGCGCA	0.711													4	31					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124257473	124257473	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:124257473C>T	uc001uft.3	+	4	331	c.306C>T	c.(304-306)TTC>TTT	p.F102F		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	102	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGGTGTTTTTCCTCAGAAATA	0.438													8	88					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124297915	124297915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:124297915C>T	uc001uft.3	+	19	3020	c.2995C>T	c.(2995-2997)CTC>TTC	p.L999F	DNAH10_uc010tav.1_Missense_Mutation_p.L541F|DNAH10_uc010taw.1_Missense_Mutation_p.L484F	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	999	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GTATCGACCTCTCTGGAAATT	0.398													8	82					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124297945	124297945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:124297945G>A	uc001uft.3	+	19	3050	c.3025G>A	c.(3025-3027)GAG>AAG	p.E1009K	DNAH10_uc010tav.1_Missense_Mutation_p.E551K|DNAH10_uc010taw.1_Missense_Mutation_p.E494K	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1009	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TATTGTGATGGAGAAATTTGC	0.403													6	83					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124330318	124330318	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:124330318C>T	uc001uft.3	+	30	5203	c.5178C>T	c.(5176-5178)ATC>ATT	p.I1726I		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1726	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TAACGCGCATCACCATGCCGC	0.463													5	63					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124335585	124335585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:124335585G>A	uc001uft.3	+	34	5924	c.5899G>A	c.(5899-5901)GAG>AAG	p.E1967K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1967	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GCAGATCTGTGAGATCATGCT	0.647													7	57					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124364289	124364289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:124364289G>A	uc001uft.3	+	49	8246	c.8221G>A	c.(8221-8223)GGA>AGA	p.G2741R		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2741	TPR 2.				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TCTGCACGAAGGAGAACCACG	0.532													14	215					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124377955	124377955	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:124377955C>T	uc001uft.3	+	52	8842	c.8817C>T	c.(8815-8817)ACC>ACT	p.T2939T		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2939	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGGGGGACACCCTGAGGACCT	0.582													5	61					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124411260	124411260	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:124411260C>T	uc001uft.3	+	68	11669	c.11644C>T	c.(11644-11646)CTG>TTG	p.L3882L	DNAH10_uc001ufu.3_5'UTR	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3882	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGTGTTTATCCTGAGTCCTGG	0.473													4	39					0	0	1	0	0
DHX37	57647	broad.mit.edu	37	12	125441590	125441590	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:125441590G>A	uc001ugy.2	-	17	2348	c.2249C>T	c.(2248-2250)CCC>CTC	p.P750L		NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	750							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		TGCTTTCTGGGGCGGTTGCAG	0.632													4	74					0	0	1	0	0
DHX37	57647	broad.mit.edu	37	12	125441662	125441663	+	Nonsense_Mutation	DNP	GG	TA	TA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:125441662_125441663GG>TA	uc001ugy.2	-	17	2275_2276	c.2176_2177CC>TA	c.(2176-2178)CCG>TAG	p.P726*		NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	726							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		GGGGGGCGTCGGGAAGGGGAAG	0.619													7	70					0	0	1	0	0
BRI3BP	140707	broad.mit.edu	37	12	125509700	125509700	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:125509700C>T	uc001uha.1	+	3	623	c.480C>T	c.(478-480)ATC>ATT	p.I160I		NM_080626	NP_542193	Q8WY22	BRI3B_HUMAN	BRI3-binding protein	160	Helical; (Potential).					integral to membrane|mitochondrial outer membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.35e-05)|Epithelial(86;0.000426)|all cancers(50;0.00576)		TCTTCTGGATCGTGCGGGTCG	0.627													7	97					0	0	1	0	0
AACS	65985	broad.mit.edu	37	12	125570932	125570932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:125570932G>A	uc001uhc.2	+	4	621	c.415G>A	c.(415-417)GCT>ACT	p.A139T	AACS_uc009zyg.2_RNA|AACS_uc001uhd.2_Missense_Mutation_p.A139T|AACS_uc009zyh.2_RNA	NM_023928	NP_076417	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	139					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			ovary(1)|liver(1)|central_nervous_system(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		GCAAGAAGTGGCTTTGTTTGC	0.463													9	117					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834343	125834343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:125834343G>A	uc001uhe.1	+	2	406	c.398G>A	c.(397-399)AGA>AAA	p.R133K		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	133	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TACTCCAACAGACCCAAAGTG	0.468													7	100					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126137155	126137155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:126137155G>A	uc001uhe.1	+	8	2076	c.2068G>A	c.(2068-2070)GAT>AAT	p.D690N	TMEM132B_uc001uhf.1_Missense_Mutation_p.D202N	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	690	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TGCTGCCCTGGATGTTCTTCA	0.602													5	39					0	0	1	0	0
TMEM132D	121256	broad.mit.edu	37	12	129558863	129558863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:129558863C>T	uc009zyl.1	-	9	3185	c.2857G>A	c.(2857-2859)GAG>AAG	p.E953K	TMEM132D_uc001uia.2_Missense_Mutation_p.E491K	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	953	Cytoplasmic (Potential).					integral to membrane		p.E953*(1)		ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		TCCTGCTCCTCGAAGGGAACC	0.458													6	100					0	0	1	0	0
TMEM132D	121256	broad.mit.edu	37	12	129822269	129822269	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:129822269G>A	uc009zyl.1	-	4	1537	c.1209C>T	c.(1207-1209)GTC>GTT	p.V403V		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	403	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CGGGGTACTCGACCTGCCACG	0.577													9	105					0	0	1	0	0
PIWIL1	9271	broad.mit.edu	37	12	130842030	130842030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:130842030G>A	uc001uik.2	+	14	1687	c.1597G>A	c.(1597-1599)GAA>AAA	p.E533K	PIWIL1_uc001uij.1_Missense_Mutation_p.E533K	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	533					gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		TTCTAGGATTGAAGTGGATGA	0.418													4	24					0	0	1	0	0
PIWIL1	9271	broad.mit.edu	37	12	130846137	130846137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:130846137G>A	uc001uik.2	+	16	2051	c.1961G>A	c.(1960-1962)GGG>GAG	p.G654E	PIWIL1_uc001uij.1_Missense_Mutation_p.G654E	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	654	RNA-binding (By similarity).|Piwi.				gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		ATCAATGAAGGGATGACCCGG	0.507													5	58					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130898849	130898849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:130898849C>T	uc001uil.2	-	14	2637	c.2473G>A	c.(2473-2475)GAT>AAT	p.D825N		NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	825						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CGCCCGTAATCGTCTGCGAGC	0.572													7	89					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130919295	130919295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:130919295G>A	uc001uil.2	-	11	2350	c.2186C>T	c.(2185-2187)TCT>TTT	p.S729F	RIMBP2_uc001uim.2_Missense_Mutation_p.S637F|RIMBP2_uc001uin.1_Missense_Mutation_p.S388F	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	729						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		GCCAAGTTCAGAGCCTTTCAG	0.667													7	130					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130926676	130926676	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:130926676C>T	uc001uil.2	-	8	1334	c.1170G>A	c.(1168-1170)GTG>GTA	p.V390V	RIMBP2_uc001uim.2_Silent_p.V298V|RIMBP2_uc001uin.1_Silent_p.V49V	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	390						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		GGGCCACCACCACGTCCTTGC	0.637													4	28					0	0	1	0	0
POLE	5426	broad.mit.edu	37	12	133220548	133220548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:133220548G>A	uc001uks.1	-	33	4209	c.4165C>T	c.(4165-4167)CCT>TCT	p.P1389S	POLE_uc001ukq.1_5'Flank|POLE_uc001ukr.1_Missense_Mutation_p.P193S|POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.P1362S	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	1389					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		TTGGAGCGAGGAAGGACCCGA	0.502								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					10	78					0	0	1	0	0
GOLGA3	2802	broad.mit.edu	37	12	133384925	133384925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr12:133384925G>A	uc001ukz.1	-	5	1289	c.730C>T	c.(730-732)CGG>TGG	p.R244W	GOLGA3_uc001ula.1_Missense_Mutation_p.R244W|GOLGA3_uc001ulb.2_Missense_Mutation_p.R244W	NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3	244	Golgi-targeting domain.				intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity	p.R244R(1)		ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		GCCAGAGACCGGATTTTGCTT	0.547													13	139					0	0	1	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751732	19751732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:19751732C>T	uc009zzj.2	-	4	440	c.391G>A	c.(391-393)GGA>AGA	p.G131R		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	131					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		CCCTGCAGTCCCGTGCACAGA	0.577													6	33					0	0	1	0	0
TPTE2	93492	broad.mit.edu	37	13	19997210	19997210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:19997210C>T	uc001umd.2	-	21	1772	c.1561G>A	c.(1561-1563)GAG>AAG	p.E521K	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.E410K|TPTE2_uc001ume.2_Missense_Mutation_p.E444K|TPTE2_uc009zzm.2_Missense_Mutation_p.E192K|TPTE2_uc010tcm.1_RNA|TPTE2_uc010tcl.1_Missense_Mutation_p.E192K	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	521	C2 tensin-type.			E -> K (in Ref. 1; CAD13144 and 2; AAP45146).		endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		AGTCATTTCTCGCCAAAAAGT	0.408													4	25					0	0	1	0	0
IFT88	8100	broad.mit.edu	37	13	21166519	21166519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:21166519C>T	uc001unh.2	+	9	797	c.401C>T	c.(400-402)CCT>CTT	p.P134L	IFT88_uc001uni.2_Missense_Mutation_p.P125L|IFT88_uc001unj.2_Missense_Mutation_p.P124L|IFT88_uc010tcq.1_Missense_Mutation_p.P105L	NM_175605	NP_783195	Q13099	IFT88_HUMAN	intraflagellar transport 88 homolog isoform 1	134					cilium morphogenesis	centriole|intraflagellar transport particle B|microtubule basal body|microtubule-based flagellum	protein binding			ovary(1)	1		all_cancers(29;5.79e-25)|all_epithelial(30;2.57e-20)|all_lung(29;3.13e-16)|Lung SC(185;0.0262)|Ovarian(182;0.0825)|Hepatocellular(188;0.244)		all cancers(112;0.000667)|Epithelial(112;0.00119)|OV - Ovarian serous cystadenocarcinoma(117;0.0141)|Lung(94;0.0183)|LUSC - Lung squamous cell carcinoma(192;0.0528)		CCTGCTTCCCCTTTGGAAGCC	0.358													6	16					0	0	1	0	0
LATS2	26524	broad.mit.edu	37	13	21563271	21563271	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:21563271G>A	uc009zzs.2	-	4	1013	c.648C>T	c.(646-648)TTC>TTT	p.F216F	LATS2_uc001unr.3_Silent_p.F216F	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	216					cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		CGACTCCGGGGAAAAGGTAGT	0.711													7	20					0	0	1	0	0
C1QTNF9	338872	broad.mit.edu	37	13	24890227	24890227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:24890227G>A	uc001upj.2	+	2	147	c.86G>A	c.(85-87)GGA>GAA	p.G29E	C1QTNF9_uc001upe.2_RNA	NM_178540	NP_848635	P0C862	C1T9A_HUMAN	C1q and tumor necrosis factor related protein 9	29	Collagen-like 1.					collagen	hormone activity				0		all_cancers(29;3.55e-20)|all_epithelial(30;4.25e-17)|all_lung(29;1.04e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.00565)|Epithelial(112;0.027)|OV - Ovarian serous cystadenocarcinoma(117;0.115)|Lung(94;0.159)		GGGCACCCTGGAATCCCTGGG	0.557													11	44					0	0	1	0	0
PARP4	143	broad.mit.edu	37	13	25049707	25049707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:25049707G>A	uc001upl.2	-	15	1923	c.1817C>T	c.(1816-1818)TCC>TTC	p.S606F	PARP4_uc010tdc.1_Missense_Mutation_p.S606F	NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	606					cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		GGTGCTGCTGGAAGTTTTGGC	0.438													12	54					0	0	1	0	0
PABPC3	5042	broad.mit.edu	37	13	25670559	25670559	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:25670559G>A	uc001upy.2	+	1	284	c.223G>A	c.(223-225)GAT>AAT	p.D75N		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	75	RRM 1.				mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		CATGAATTTTGATGTTATAAA	0.478													5	32					0	0	1	0	0
ATP8A2	51761	broad.mit.edu	37	13	26402264	26402264	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:26402264C>T	uc001uqk.2	+	28	2830	c.2688C>T	c.(2686-2688)TTC>TTT	p.F896F	ATP8A2_uc010tdi.1_Intron|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc010aaj.1_Silent_p.F446F	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	856	Helical; (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		AGCTTTGGTTCGCCTTTGTTA	0.403													13	102					0	0	1	0	0
FLT3	2322	broad.mit.edu	37	13	28631588	28631588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:28631588G>A	uc001urw.2	-	4	462	c.380C>T	c.(379-381)TCC>TTC	p.S127F	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.S127F	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	127	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	AATGACCATGGAAACAACTCC	0.333			Mis|O		AML|ALL								7	32					0	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	28880827	28880827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:28880827G>A	uc001usb.3	-	29	4088	c.3803C>T	c.(3802-3804)TCG>TTG	p.S1268L	FLT1_uc010aap.2_Missense_Mutation_p.S273L|FLT1_uc010aaq.2_Missense_Mutation_p.S393L|FLT1_uc001usa.3_Missense_Mutation_p.S486L	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	1268	Cytoplasmic (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	AATCTTGAGCGAGGCCTTGGG	0.532													5	51					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29599268	29599268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:29599268G>A	uc001usl.3	+	1	521	c.463G>A	c.(463-465)GAC>AAC	p.D155N		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	145						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						GGCCAGTCTAGACGTTTTGGC	0.512													15	58					0	0	1	0	0
SLC7A1	6541	broad.mit.edu	37	13	30091297	30091297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:30091297G>A	uc001uso.2	-	11	2048	c.1661C>T	c.(1660-1662)ACC>ATC	p.T554I		NM_003045	NP_003036	P30825	CTR1_HUMAN	solute carrier family 7 (cationic amino acid	554	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	receptor activity				0		Lung SC(185;0.0257)|Breast(139;0.238)		all cancers(112;0.0148)|OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(112;0.0875)|GBM - Glioblastoma multiforme(144;0.179)	L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	TGAGAGCTTGGTCTTGCTCTC	0.642													4	15					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32653147	32653147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:32653147C>T	uc001utx.2	+	2	743	c.247C>T	c.(247-249)CGT>TGT	p.R83C	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	83					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		ACGCAAGATTCGTATCATTAT	0.413													6	40					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32811724	32811724	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:32811724C>T	uc001utx.2	+	44	6515	c.6019C>T	c.(6019-6021)CAG>TAG	p.Q2007*	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2007					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		GGACAGAATTCAGGCTTGTAC	0.537													4	23					0	0	1	0	0
KL	9365	broad.mit.edu	37	13	33628097	33628097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:33628097C>T	uc001uus.2	+	2	1021	c.1013C>T	c.(1012-1014)CCC>CTC	p.P338L	KL_uc001uur.1_Missense_Mutation_p.P31L	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	338	Glycosyl hydrolase-1 1.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		GGTGACTATCCCGAGAGCATG	0.393													16	56					0	0	1	0	0
STARD13	90627	broad.mit.edu	37	13	33704213	33704213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:33704213C>T	uc001uuw.2	-	5	727	c.601G>A	c.(601-603)GAA>AAA	p.E201K	STARD13_uc001uuu.2_Missense_Mutation_p.E193K|STARD13_uc001uuv.2_Missense_Mutation_p.E83K|STARD13_uc001uux.2_Missense_Mutation_p.E166K|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Missense_Mutation_p.E186K	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	201					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		CCACTGCTTTCGCTGTGAATG	0.627													6	24					0	0	1	0	0
SOHLH2	54937	broad.mit.edu	37	13	36748901	36748901	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:36748901C>T	uc001uvj.2	-	7	836	c.747G>A	c.(745-747)GTG>GTA	p.V249V	SOHLH2_uc010tei.1_Silent_p.V326V	NM_017826	NP_060296	Q9NX45	SOLH2_HUMAN	spermatogenesis and oogenesis specific basic	249	Helix-loop-helix motif.				cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;4.63e-08)|Epithelial(112;2.67e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00272)|BRCA - Breast invasive adenocarcinoma(63;0.00685)|GBM - Glioblastoma multiforme(144;0.0273)		GGATATATTTCACATAATCAA	0.403													7	24					0	0	1	0	0
SMAD9	4093	broad.mit.edu	37	13	37453748	37453748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:37453748C>T	uc001uvw.2	-	2	422	c.79G>A	c.(79-81)GGA>AGA	p.G27R	SMAD9_uc001uvx.2_Missense_Mutation_p.G27R|SMAD9_uc010tep.1_5'UTR	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	27	MH1.				BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		TCTTCATCTCCTTGCTTCCAG	0.562													10	66					0	0	1	0	0
CSNK1A1L	122011	broad.mit.edu	37	13	37679021	37679021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:37679021C>T	uc001uwm.1	-	1	781	c.373G>A	c.(373-375)GAA>AAA	p.E125K		NM_145203	NP_660204	Q8N752	KC1AL_HUMAN	casein kinase 1, alpha 1-like	125	Protein kinase.				Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)	1		Lung NSC(96;7.97e-05)|Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.109)		all cancers(112;3.58e-07)|Epithelial(112;1.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00695)|BRCA - Breast invasive adenocarcinoma(63;0.0117)|GBM - Glioblastoma multiforme(144;0.0407)		TGCACGTATTCAATTCTGCTG	0.408													5	46					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39265018	39265018	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:39265018C>T	uc001uwv.2	+	1	3846	c.3537C>T	c.(3535-3537)TTC>TTT	p.F1179F		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1179	CSPG 8.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GACAGTTCTTCCCCATTGTAA	0.418													18	80					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39265030	39265030	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:39265030C>T	uc001uwv.2	+	1	3858	c.3549C>T	c.(3547-3549)ATC>ATT	p.I1183I		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1183	CSPG 8.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CCATTGTAATCATTCCCACCA	0.428													20	83					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39266420	39266420	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:39266420C>T	uc001uwv.2	+	1	5248	c.4939C>T	c.(4939-4941)CAG>TAG	p.Q1647*		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1647	Extracellular (Potential).|CSPG 12.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GATGAAGATCCAGGTCTTGGC	0.493													5	75					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39422800	39422800	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:39422800C>T	uc001uwv.2	+	8	6681	c.6372C>T	c.(6370-6372)GTC>GTT	p.V2124V	FREM2_uc001uww.2_Silent_p.V210V	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2124	Extracellular (Potential).|Calx-beta 4.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		ATGACTCTGTCTCCGATTGTG	0.368													2	2					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39448701	39448701	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:39448701C>T	uc001uwv.2	+	18	8568	c.8259C>T	c.(8257-8259)GGC>GGT	p.G2753G		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2753	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		AGTTCCATGGCTTATTTGTGC	0.493													5	76					0	0	1	0	0
C13orf23	80209	broad.mit.edu	37	13	39588539	39588539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:39588539G>A	uc001uwy.2	-	11	1723	c.850C>T	c.(850-852)CCT>TCT	p.P284S	C13orf23_uc001uwz.2_Missense_Mutation_p.P262S	NM_025138	NP_079414	Q86XN7	CM023_HUMAN	hypothetical protein LOC80209 isoform 1	284	Pro-rich.									ovary(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)	5		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;3.7e-08)|Epithelial(112;4.28e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00114)|BRCA - Breast invasive adenocarcinoma(63;0.00366)|GBM - Glioblastoma multiforme(144;0.0146)		GATGCAGTAGGAACAGGAGTT	0.478													6	28					0	0	1	0	0
KIAA0564	23078	broad.mit.edu	37	13	42161681	42161681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:42161681C>T	uc001uyj.2	-	42	5308	c.5238G>A	c.(5236-5238)ATG>ATA	p.M1746I		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1746	VWFA.					extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		CGAAGGCTTCCATGACCATAC	0.483													5	30					0	0	1	0	0
SIAH3	283514	broad.mit.edu	37	13	46425736	46425736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:46425736G>A	uc001vap.2	-	1	111	c.29C>T	c.(28-30)GCT>GTT	p.A10V		NM_198849	NP_942146	Q8IW03	SIAH3_HUMAN	seven in absentia homolog 3	10					multicellular organismal development|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding			ovary(1)|skin(1)	2						ATCTAATACAGCCCCAAAGCA	0.537													5	37					0	0	1	0	0
C13orf1	57213	broad.mit.edu	37	13	50502123	50502123	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:50502123G>A	uc001vdl.2	-	3	584	c.322C>T	c.(322-324)CTT>TTT	p.L108F	C13orf1_uc001vdm.2_Missense_Mutation_p.L69F|C13orf1_uc010tgm.1_Intron|C13orf1_uc010adj.2_Missense_Mutation_p.L108F	NM_020456	NP_065189	Q5W111	SPRY7_HUMAN	chromosome 13 open reading frame 1 isoform 1	108	B30.2/SPRY.										0		Lung NSC(96;7.5e-06)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Acute lymphoblastic leukemia(7;0.117)		GBM - Glioblastoma multiforme(99;1.72e-10)|COAD - Colon adenocarcinoma(199;0.208)		TTGTGGTAAAGGGCTCCATCA	0.468													5	44					0	0	1	0	0
INTS6	26512	broad.mit.edu	37	13	51952473	51952473	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:51952473G>A	uc001vfk.2	-	12	2118	c.1504C>T	c.(1504-1506)CAA>TAA	p.Q502*	INTS6_uc001vfi.2_Nonsense_Mutation_p.Q186*|INTS6_uc001vfj.2_Nonsense_Mutation_p.Q489*|INTS6_uc001vfl.2_Nonsense_Mutation_p.Q324*	NM_012141	NP_036273	Q9UL03	INT6_HUMAN	integrator complex subunit 6 isoform a	502					snRNA processing	actin cytoskeleton|integrator complex	protein binding|transmembrane receptor activity			ovary(1)|lung(1)	2		Breast(56;0.000286)|Lung NSC(96;0.00145)|Prostate(109;0.00403)|Hepatocellular(98;0.065)|Myeloproliferative disorder(33;0.163)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;7.7e-08)		AGGAGTTGTTGAAAATCTTTC	0.423													7	42					0	0	1	0	0
ATP7B	540	broad.mit.edu	37	13	52516652	52516652	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:52516652G>A	uc001vfw.2	-	15	3439	c.3282C>T	c.(3280-3282)TTC>TTT	p.F1094F	ATP7B_uc010adv.2_Silent_p.F664F|ATP7B_uc001vfx.2_Silent_p.F887F|ATP7B_uc001vfy.2_Silent_p.F983F|ATP7B_uc010tgt.1_Silent_p.F1029F|ATP7B_uc010tgu.1_Silent_p.F1046F|ATP7B_uc010tgv.1_Silent_p.F1016F|ATP7B_uc001vfv.2_Silent_p.F366F|ATP7B_uc010tgs.1_Silent_p.F305F	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	1094	Cytoplasmic (Potential).		F -> L (in WD).		ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		GCACTGCCTGGAAGTCCGTGC	0.562									Wilson_disease				13	54					0	0	1	0	0
ATP7B	540	broad.mit.edu	37	13	52534337	52534337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:52534337G>A	uc001vfw.2	-	7	2225	c.2068C>T	c.(2068-2070)CCA>TCA	p.P690S	ATP7B_uc010adv.2_Intron|ATP7B_uc001vfx.2_Intron|ATP7B_uc001vfy.2_Missense_Mutation_p.P579S|ATP7B_uc010tgt.1_Missense_Mutation_p.P690S|ATP7B_uc010tgu.1_Missense_Mutation_p.P690S|ATP7B_uc010tgv.1_Missense_Mutation_p.P690S|ATP7B_uc001vfv.2_5'Flank|ATP7B_uc010tgs.1_Intron|ATP7B_uc010tgw.1_Intron	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	690	Extracellular (Potential).		P -> L (in WD).		ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		GACAGTCCTGGAATGATGTTG	0.483									Wilson_disease				10	50					0	0	1	0	0
ATP7B	540	broad.mit.edu	37	13	52548993	52548993	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:52548993G>A	uc001vfw.2	-	2	520	c.363C>T	c.(361-363)TTC>TTT	p.F121F	ATP7B_uc010adv.2_Silent_p.F121F|ATP7B_uc001vfx.2_Silent_p.F121F|ATP7B_uc001vfy.2_Silent_p.F121F|ATP7B_uc010tgt.1_Silent_p.F121F|ATP7B_uc010tgu.1_Silent_p.F121F|ATP7B_uc010tgv.1_Silent_p.F121F|ATP7B_uc010tgw.1_Silent_p.F89F	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	121	HMA 1.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		TGCTGGCCTCGAAGCCCATGT	0.582									Wilson_disease				8	51					0	0	1	0	0
PCDH8	5100	broad.mit.edu	37	13	53422283	53422283	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:53422283C>T	uc001vhi.2	-	1	492	c.289G>A	c.(289-291)GGC>AGC	p.G97S	PCDH8_uc001vhj.2_Missense_Mutation_p.G97S	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	97	Extracellular (Potential).|Cadherin 1.				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		GGGGCCTGGCCACACAGCCGC	0.672													11	36					0	0	1	0	0
PCDH20	64881	broad.mit.edu	37	13	61986627	61986627	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:61986627G>A	uc001vid.3	-	2	1969	c.1605C>T	c.(1603-1605)TTC>TTT	p.F535F	PCDH20_uc010thj.1_Silent_p.F535F	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	508	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		AGGGTTGAAGGAAAATTGGAG	0.428													12	59					0	0	1	0	0
DACH1	1602	broad.mit.edu	37	13	72256034	72256034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:72256034G>A	uc010thn.1	-	3	1280	c.857C>T	c.(856-858)CCT>CTT	p.P286L	DACH1_uc010tho.1_Missense_Mutation_p.P286L|DACH1_uc010thp.1_Missense_Mutation_p.P286L	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	286	Interaction with SIX6 and HDAC3 (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		AGGCCTTCCAGGTCTAGAACT	0.403													11	19					0	0	1	0	0
RBM26	64062	broad.mit.edu	37	13	79946063	79946063	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:79946063G>A	uc001vkz.2	-	4	344	c.330C>T	c.(328-330)ATC>ATT	p.I110I	RBM26_uc001vky.2_Silent_p.I110I|RBM26_uc001vla.2_Silent_p.I110I|RBM26_uc001vkx.2_5'Flank|RBM26_uc001vlb.1_5'Flank	NM_022118	NP_071401	Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	110					mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		CCTCCTTAGTGATCTGATTAA	0.313													4	19					0	0	1	0	0
ABCC4	10257	broad.mit.edu	37	13	95861734	95861734	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:95861734G>A	uc001vmd.3	-	6	858	c.739C>T	c.(739-741)CTC>TTC	p.L247F	ABCC4_uc010afk.2_Missense_Mutation_p.L247F|ABCC4_uc001vme.2_Missense_Mutation_p.L247F|ABCC4_uc010tih.1_Missense_Mutation_p.L172F|ABCC4_uc001vmf.2_Missense_Mutation_p.L204F|ABCC4_uc010afl.1_Missense_Mutation_p.L204F|ABCC4_uc010afm.1_Missense_Mutation_p.L260F	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	247	Helical; (Potential).|ABC transmembrane type-1 1.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	AAGGGCAGGAGAATGATTAGA	0.468													5	35					0	0	1	0	0
UGGT2	55757	broad.mit.edu	37	13	96578027	96578027	+	Silent	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:96578027A>G	uc001vmt.2	-	20	2372	c.2202T>C	c.(2200-2202)GAT>GAC	p.D734D		NM_020121	NP_064506	Q9NYU1	UGGG2_HUMAN	UDP-glucose ceramide glucosyltransferase-like 2	734					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity			ovary(2)|central_nervous_system(1)	3						TTATACTCTCATCTGAAAGTT	0.289													6	10					0	0	1	0	0
IPO5	3843	broad.mit.edu	37	13	98645422	98645422	+	Missense_Mutation	SNP	C	T	T	rs1053814		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:98645422C>T	uc001vnf.1	+	8	921	c.856C>T	c.(856-858)CTC>TTC	p.L286F	IPO5_uc001vne.2_Missense_Mutation_p.L304F|IPO5_uc010tik.1_Missense_Mutation_p.L161F|IPO5_uc010til.1_Missense_Mutation_p.L226F	NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	286					interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding			ovary(1)|lung(1)|skin(1)	3						GATCGTCACCCTCTCTGAGAC	0.388													8	15					0	0	1	0	0
FARP1	10160	broad.mit.edu	37	13	99042367	99042367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:99042367C>T	uc001vnj.2	+	10	1348	c.1012C>T	c.(1012-1014)CGG>TGG	p.R338W	FARP1_uc001vnh.2_Missense_Mutation_p.R338W	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	338					regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			GTCATCATTTCGGTTCAGGTG	0.532													7	94					0	0	1	0	0
FAM155A	728215	broad.mit.edu	37	13	108518274	108518274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:108518274G>A	uc001vql.2	-	1	1187	c.671C>T	c.(670-672)TCG>TTG	p.S224L		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	224						integral to membrane	binding			skin(1)	1						ATTACAAAACGAAAGGTAAAA	0.577													12	91					0	0	1	0	0
COL4A2	1284	broad.mit.edu	37	13	111156230	111156230	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:111156230G>A	uc001vqx.2	+	44	4464	c.4175G>A	c.(4174-4176)GGA>GAA	p.G1392E		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1392	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			GGGATTGCAGGAATCCCCCAG	0.682													7	45					0	0	1	0	0
ATP11A	23250	broad.mit.edu	37	13	113474224	113474224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr13:113474224C>T	uc001vsi.3	+	8	773	c.685C>T	c.(685-687)CGC>TGC	p.R229C	ATP11A_uc001vsj.3_Missense_Mutation_p.R229C|ATP11A_uc001vsm.1_Missense_Mutation_p.R105C	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	229	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				GTTCGTGGGTCGCATCAACGT	0.622													7	39					0	0	1	0	0
OR11H12	440153	broad.mit.edu	37	14	19378561	19378561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:19378561C>T	uc010tkp.1	+	1	968	c.968C>T	c.(967-969)TCC>TTC	p.S323F		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	323	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTGGGAAGTTCCAACATAATC	0.358													3	18					0	0	1	0	0
OR4K5	79317	broad.mit.edu	37	14	20388965	20388965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:20388965C>T	uc010tkw.1	+	1	200	c.200C>T	c.(199-201)TCC>TTC	p.S67F		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GGAAACCTTTCCTTTGTTGAC	0.433													4	49					0	0	1	0	0
OR4L1	122742	broad.mit.edu	37	14	20528811	20528811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:20528811G>A	uc001vwn.1	+	1	608	c.608G>A	c.(607-609)AGC>AAC	p.S203N		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	203	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		ATTGCTGACAGCGGGCTGCTC	0.433													3	18					0	0	1	0	0
OR11H4	390442	broad.mit.edu	37	14	20711020	20711020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:20711020C>T	uc010tld.1	+	1	70	c.70C>T	c.(70-72)CTC>TTC	p.L24F		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		AGAGTTTATTCTCCTGGGATT	0.418													5	25					0	0	1	0	0
PARP2	10038	broad.mit.edu	37	14	20824111	20824111	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:20824111C>T	uc001vxc.2	+	11	1089	c.1061C>T	c.(1060-1062)CCA>CTA	p.P354L	PARP2_uc001vxd.2_Missense_Mutation_p.P341L|PARP2_uc001vxb.1_Missense_Mutation_p.P354L|PARP2_uc010tle.1_Missense_Mutation_p.P104L	NM_005484	NP_005475	Q9UGN5	PARP2_HUMAN	poly (ADP-ribose) polymerase family, member 2	354					protein ADP-ribosylation	nucleolus|nucleoplasm	DNA binding|NAD+ ADP-ribosyltransferase activity			ovary(1)|pancreas(1)	2	all_cancers(95;0.00092)	all_lung(585;0.235)	Epithelial(56;5.34e-07)|all cancers(55;3.7e-06)	GBM - Glioblastoma multiforme(265;0.00888)|READ - Rectum adenocarcinoma(17;0.0649)		CTACAAAGCCCAGAACACCCA	0.403								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					4	59					0	0	1	0	0
TEP1	7011	broad.mit.edu	37	14	20840970	20840970	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:20840970A>T	uc001vxe.2	-	49	7038	c.6998T>A	c.(6997-6999)TTT>TAT	p.F2333Y	TEP1_uc010ahj.1_RNA|TEP1_uc010ahk.2_Missense_Mutation_p.F1676Y|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.F2225Y|TEP1_uc010tlh.1_Intron	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	2333	WD 17.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GAGGACAAAAAAGGTGTGTGC	0.507													10	78					0	0	1	0	0
RNASE1	6035	broad.mit.edu	37	14	21270045	21270045	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:21270045C>T	uc001vyf.2	-	2	359	c.183G>A	c.(181-183)CGG>CGA	p.R61R	RNASE1_uc001vyg.2_Silent_p.R61R|RNASE1_uc001vyh.2_Silent_p.R61R|RNASE1_uc001vyi.2_Silent_p.R61R	NM_198232	NP_937875	P07998	RNAS1_HUMAN	pancreatic ribonuclease precursor	61						extracellular region	nucleic acid binding|pancreatic ribonuclease activity|protein binding				0	all_cancers(95;0.00671)	all_lung(585;0.235)	Epithelial(56;9.21e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0126)		GTGTCATATTCCGGCGCCTCA	0.542													13	52					0	0	1	0	0
RNASE1	6035	broad.mit.edu	37	14	21270057	21270057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:21270057C>T	uc001vyf.2	-	2	347	c.171G>A	c.(169-171)ATG>ATA	p.M57I	RNASE1_uc001vyg.2_Missense_Mutation_p.M57I|RNASE1_uc001vyh.2_Missense_Mutation_p.M57I|RNASE1_uc001vyi.2_Missense_Mutation_p.M57I	NM_198232	NP_937875	P07998	RNAS1_HUMAN	pancreatic ribonuclease precursor	57						extracellular region	nucleic acid binding|pancreatic ribonuclease activity|protein binding				0	all_cancers(95;0.00671)	all_lung(585;0.235)	Epithelial(56;9.21e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0126)		GGCGCCTCATCATTTGGTTAC	0.552													12	50					0	0	1	0	0
HNRNPC	3183	broad.mit.edu	37	14	21681206	21681206	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:21681206G>A	uc001vzy.2	-	6	719	c.475C>T	c.(475-477)CAG>TAG	p.Q159*	HNRNPC_uc001vzw.2_Nonsense_Mutation_p.Q146*|HNRNPC_uc001wad.2_Nonsense_Mutation_p.Q79*|HNRNPC_uc001vzx.2_Intron|HNRNPC_uc001vzz.2_Nonsense_Mutation_p.Q146*|HNRNPC_uc001waa.2_Nonsense_Mutation_p.Q159*|HNRNPC_uc010ail.2_Nonsense_Mutation_p.Q159*|HNRNPC_uc010tlq.1_Intron|HNRNPC_uc001wab.2_Nonsense_Mutation_p.Q146*|HNRNPC_uc001wac.2_Intron|HNRNPC_uc010tlr.1_Nonsense_Mutation_p.Q24*|HNRNPC_uc001waf.2_Nonsense_Mutation_p.Q146*|HNRNPC_uc001wae.2_Nonsense_Mutation_p.Q146*	NM_031314	NP_112604	P07910	HNRPC_HUMAN	heterogeneous nuclear ribonucleoprotein C	159	Nuclear localization signal (Potential).					catalytic step 2 spliceosome|nucleoplasm	identical protein binding|nucleotide binding|RNA binding				0	all_cancers(95;0.00176)		Epithelial(56;1.08e-06)|all cancers(55;8.95e-06)	GBM - Glioblastoma multiforme(265;0.00783)		GATACACGCTGACGTTTCGAG	0.463													4	29					0	0	1	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21762904	21762904	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:21762904C>T	uc001wag.2	+	2	154	c.154C>T	c.(154-156)CGA>TGA	p.R52*		NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	52					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		CAGTTTCTTTCGACTTCGCGA	0.393													5	44					0	0	1	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21788232	21788232	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:21788232G>A	uc001wag.2	+	11	1363	c.1363G>A	c.(1363-1365)GAA>AAA	p.E455K	RPGRIP1_uc001wah.2_Missense_Mutation_p.E97K|RPGRIP1_uc001wai.2_Missense_Mutation_p.E97K|RPGRIP1_uc001waj.1_5'Flank|RPGRIP1_uc001wak.2_5'Flank|RPGRIP1_uc010aim.2_5'Flank|RPGRIP1_uc001wal.2_5'Flank	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	455	Potential.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		GCATAAACAGGAAGTAGAGCT	0.428													5	22					0	0	1	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21788275	21788275	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:21788275C>T	uc001wag.2	+	11	1406	c.1406C>T	c.(1405-1407)CCT>CTT	p.P469L	RPGRIP1_uc001wah.2_Missense_Mutation_p.P111L|RPGRIP1_uc001wai.2_Missense_Mutation_p.P111L|RPGRIP1_uc001waj.1_5'Flank|RPGRIP1_uc001wak.2_5'Flank|RPGRIP1_uc010aim.2_5'Flank|RPGRIP1_uc001wal.2_5'Flank	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	469	Potential.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		TCCCAACCTCCTGACAGGCAA	0.468													4	23					0	0	1	0	0
CHD8	57680	broad.mit.edu	37	14	21878027	21878027	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:21878027G>T	uc001was.1	-	11	1604	c.1510C>A	c.(1510-1512)CCA>ACA	p.P504T	CHD8_uc001war.1_Missense_Mutation_p.P400T|CHD8_uc001wav.1_5'UTR	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	783	Chromo 2.				ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		TTGAGTTCTGGGTGCCTTGAC	0.358													4	48					1	1	1	1	0
OR10G3	26533	broad.mit.edu	37	14	22038389	22038389	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:22038389G>A	uc010tmb.1	-	1	487	c.487C>T	c.(487-489)CTA>TTA	p.L163L		NM_001005465	NP_001005465	Q8NGC4	O10G3_HUMAN	olfactory receptor, family 10, subfamily G,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|central_nervous_system(1)	2	all_cancers(95;0.000987)			GBM - Glioblastoma multiforme(265;0.0139)		CGGAAGGTTAGGATGGCCTGG	0.582													5	76					0	0	1	0	0
OR10G2	26534	broad.mit.edu	37	14	22102213	22102213	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:22102213G>A	uc010tmc.1	-	1	786	c.786C>T	c.(784-786)TTC>TTT	p.F262F		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	262	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		TAAGGTAGATGAAAATACAGG	0.547													4	40					0	0	1	0	0
OR4E2	26686	broad.mit.edu	37	14	22133660	22133660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:22133660C>T	uc010tmd.1	+	1	364	c.364C>T	c.(364-366)CGT>TGT	p.R122C		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		GGCGTATGATCGTTACGTGGC	0.468													5	64					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	22337387	22337387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:22337387G>A	uc010tmf.1	+	2	260	c.181G>A	c.(181-183)GGA>AGA	p.G61R	uc001wbw.2_Intron|uc010tmg.1_Intron|uc010tmh.1_Missense_Mutation_p.G60R|uc001wby.2_Intron					SubName: Full=Putative uncharacterized protein ENSP00000374943;																		GCAAGAACTTGGAAAAGGACC	0.428													6	105					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	23020918	23020918	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:23020918C>T	uc001wcx.3	+	7		c.1229C>T			uc001wdv.3_3'UTR|uc001wec.2_3'UTR|uc001wee.3_3'UTR|uc001wei.2_3'UTR|uc001wej.2_3'UTR|uc001wek.2_3'UTR|uc001wel.2_3'UTR|uc001wem.3_3'UTR|uc001wep.2_3'UTR|uc001weq.2_3'UTR|uc001wer.2_RNA|uc001weu.2_3'UTR|uc001wev.2_3'UTR|uc001wew.2_3'UTR|uc001wfe.2_3'UTR|uc001wfk.2_3'UTR|uc010ajy.1_3'UTR|uc001wfn.2_3'UTR|uc001wfp.2_3'UTR|uc001wfx.2_3'UTR|uc001wgd.2_3'UTR|uc001wge.3_3'UTR|uc010tmx.1_3'UTR|uc001wgh.2_3'UTR|uc001wgk.2_3'UTR					Homo sapiens mRNA for T cell receptor alpha variable 13, partial cds, clone: SEB 7.																		GCTCTAGGTCCCGGAGAATGT	0.473													13	36					0	0	1	0	0
LRP10	26020	broad.mit.edu	37	14	23345488	23345488	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:23345488C>T	uc001whd.2	+	5	1884	c.1331C>T	c.(1330-1332)GCT>GTT	p.A444V	LRP10_uc001whe.2_Missense_Mutation_p.A320V	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	444	Helical; (Potential).				endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		GTCATTACAGCTGCAGTCATT	0.602													5	91					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23853900	23853900	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:23853900C>T	uc001wjv.2	-	36	5383	c.5316G>A	c.(5314-5316)AAG>AAA	p.K1772K		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1772	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CCTGCTCCTTCTTCAGCTCCT	0.622													6	84					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23855815	23855815	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:23855815C>T	uc001wjv.2	-	33	4735	c.4668G>A	c.(4666-4668)GAG>GAA	p.E1556E		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1556	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TCTTGCCCTCCTCGTGCTCCA	0.632													12	146					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23856860	23856860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:23856860C>T	uc001wjv.2	-	32	4595	c.4528G>A	c.(4528-4530)GAA>AAA	p.E1510K		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1510	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TCCGAGATTTCCTCTGGGGAC	0.582													5	59					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23863004	23863004	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:23863004C>T	uc001wjv.2	-	22	2866	c.2799G>A	c.(2797-2799)GAG>GAA	p.E933E		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	933	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CCGCGTTCATCTCCTCCTCAT	0.532													8	67					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23887472	23887472	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:23887472C>T	uc001wjx.2	-	30	4222	c.4116G>A	c.(4114-4116)AGG>AGA	p.R1372R	MIR208B_hsa-mir-208b|MI0005570_5'Flank	NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1372	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CATACTTGGTCCTCCACTGGG	0.632													5	74					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23888752	23888752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:23888752C>T	uc001wjx.2	-	28	3899	c.3793G>A	c.(3793-3795)GAG>AAG	p.E1265K	MIR208B_hsa-mir-208b|MI0005570_5'Flank	NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1265	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CGCTGGGTCTCCTCCGCCTTG	0.562													11	105					0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23900866	23900866	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:23900866G>A	uc001wjx.2	-	8	766	c.660C>T	c.(658-660)ATC>ATT	p.I220I		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	220	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TGGCCTGGATGATCTGGTCCT	0.627													5	93					0	0	1	0	0
AP1G2	8906	broad.mit.edu	37	14	24035517	24035517	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:24035517G>A	uc001wkl.2	-	4	778	c.441C>T	c.(439-441)CTC>CTT	p.L147L	AP1G2_uc001wkj.2_5'UTR|AP1G2_uc001wkk.3_Silent_p.L18L|AP1G2_uc001wkn.2_5'UTR|uc001wko.1_RNA|AP1G2_uc001wkp.1_5'Flank|AP1G2_uc010tnp.1_Silent_p.L147L|AP1G2_uc010aks.2_Silent_p.L18L|AP1G2_uc010akt.2_Silent_p.L18L|AP1G2_uc010tnq.1_RNA	NM_003917	NP_003908	O75843	AP1G2_HUMAN	adaptor-related protein complex 1, gamma 2	147					interspecies interaction between organisms|intracellular protein transport|vesicle-mediated transport	AP-1 adaptor complex|endosome membrane	protein binding|protein transporter activity			ovary(1)	1	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00672)		TGGGCTGCAGGAGCAGTTTCT	0.592													6	61					0	0	1	0	0
LRRC16B	90668	broad.mit.edu	37	14	24537878	24537878	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:24537878C>T	uc001wlj.2	+	37	3925	c.3768C>T	c.(3766-3768)TTC>TTT	p.F1256F	LRRC16B_uc001wlk.2_Silent_p.F309F|CPNE6_uc010tnv.1_5'Flank|CPNE6_uc001wlm.2_5'Flank|CPNE6_uc001wll.2_5'Flank	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	1256										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		GGACCCTCTTCCCAGAGAGGA	0.592													5	27					0	0	1	0	0
DCAF11	80344	broad.mit.edu	37	14	24590593	24590593	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:24590593C>T	uc001wlv.2	+	13	1546	c.1266C>T	c.(1264-1266)CTC>CTT	p.L422L	DCAF11_uc001wlw.2_Silent_p.L422L|DCAF11_uc001wlz.2_Silent_p.L322L|DCAF11_uc001wly.2_Silent_p.L378L|DCAF11_uc001wme.2_Silent_p.L382L|DCAF11_uc010tny.1_Silent_p.L289L|DCAF11_uc001wmd.2_Silent_p.L422L|DCAF11_uc001wmc.2_Silent_p.L322L|DCAF11_uc001wmb.3_Silent_p.L396L|DCAF11_uc001wma.3_Silent_p.L422L	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	422						CUL4 RING ubiquitin ligase complex	protein binding				0						AGCTGAAGCTCCCAGGGGACA	0.577													5	90					0	0	1	0	0
FITM1	161247	broad.mit.edu	37	14	24601895	24601895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:24601895C>T	uc001wmf.2	+	2	840	c.742C>T	c.(742-744)CAC>TAC	p.H248Y		NM_203402	NP_981947	A5D6W6	FITM1_HUMAN	fat-inducing transcript 1	248	Extracellular (Potential).				lipid particle organization|positive regulation of sequestering of triglyceride	endoplasmic reticulum membrane|integral to membrane					0						CCAGTACACTCACAAGGTGGT	0.612													5	83					0	0	1	0	0
RNF31	55072	broad.mit.edu	37	14	24619927	24619927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:24619927C>T	uc001wmn.1	+	8	1567	c.1318C>T	c.(1318-1320)CCA>TCA	p.P440S	RNF31_uc001wml.1_Missense_Mutation_p.P289S|RNF31_uc001wmm.1_Intron|RNF31_uc010alg.1_Missense_Mutation_p.P255S|RNF31_uc001wmo.1_5'Flank|RNF31_uc001wmp.2_5'Flank	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	440	Polyubiquitin-binding.				CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		TAGCCCCATTCCAGCACAACA	0.602													11	98					0	0	1	0	0
IRF9	10379	broad.mit.edu	37	14	24633331	24633331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:24633331C>T	uc001wmq.2	+	6	764	c.637C>T	c.(637-639)CCT>TCT	p.P213S	RNF31_uc001wmp.2_RNA|IRF9_uc010alj.2_Missense_Mutation_p.P111S	NM_006084	NP_006075	Q00978	IRF9_HUMAN	interferon-stimulated transcription factor 3,	213					interferon-gamma-mediated signaling pathway|response to virus|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytosol|nucleoplasm	DNA binding|identical protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				GBM - Glioblastoma multiforme(265;0.00853)		GTTTCTGCTTCCTCCAGAGCC	0.532													9	82					0	0	1	0	0
REC8	9985	broad.mit.edu	37	14	24642195	24642195	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:24642195C>T	uc001wmr.2	+	4	640	c.213C>T	c.(211-213)GCC>GCT	p.A71A	REC8_uc001wms.2_Silent_p.A71A	NM_005132	NP_005123	O95072	REC8_HUMAN	REC8 homolog	71					mitotic metaphase/anaphase transition|mitotic prometaphase|reciprocal meiotic recombination|sister chromatid cohesion	nucleoplasm					0				GBM - Glioblastoma multiforme(265;0.00839)		ATCTCTCAGCCCAACTTCAGA	0.602													7	109					0	0	1	0	0
TGM1	7051	broad.mit.edu	37	14	24718641	24718642	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:24718641_24718642CC>AT	uc001wod.2	-	15	2455_2456	c.2331_2332GG>AT	c.(2329-2334)CAGGTG>CAATTG	p.V778L	TGM1_uc010tog.1_Missense_Mutation_p.V336L	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	778					cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	ACACCGTGCACCTGGGAGAGCT	0.609													5	54					0	0	1	0	0
RABGGTA	5875	broad.mit.edu	37	14	24738718	24738718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:24738718G>A	uc001wof.2	-	5	1032	c.610C>T	c.(610-612)CCT>TCT	p.P204S	RABGGTA_uc001woe.2_RNA|RABGGTA_uc001wog.2_Missense_Mutation_p.P204S|RABGGTA_uc001woh.2_RNA|RABGGTA_uc001woi.2_RNA	NM_004581	NP_004572	Q92696	PGTA_HUMAN	Rab geranylgeranyltransferase alpha	204					visual perception		Rab geranylgeranyltransferase activity|zinc ion binding				0				GBM - Glioblastoma multiforme(265;0.0184)		ACATCCTCAGGGAGGCGCCCC	0.607													8	130					0	0	1	0	0
C14orf21	161424	broad.mit.edu	37	14	24769388	24769388	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:24769388C>T	uc001wol.1	+	1	291	c.228C>T	c.(226-228)CCC>CCT	p.P76P	C14orf21_uc001wom.1_5'Flank|DHRS1_uc001woj.1_5'Flank|DHRS1_uc001wok.2_5'Flank	NM_174913	NP_777573	Q86U38	CN021_HUMAN	hypothetical protein LOC161424	76							RNA binding			breast(2)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(265;0.0185)		AAGAGGCTCCCGAGACTGGGG	0.612													4	92					0	0	1	0	0
ADCY4	196883	broad.mit.edu	37	14	24798270	24798270	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:24798270G>A	uc001wov.2	-	10	1527	c.1521C>T	c.(1519-1521)CTC>CTT	p.L507L	ADCY4_uc001wow.2_Silent_p.L507L|ADCY4_uc010toh.1_Silent_p.L193L|ADCY4_uc001wox.2_Silent_p.L507L|ADCY4_uc001woy.2_Silent_p.L507L	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	507	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		CACATACCGGGAGAGGGGTGG	0.622													6	86					0	0	1	0	0
RIPK3	11035	broad.mit.edu	37	14	24805496	24805496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:24805496G>A	uc001wpb.2	-	10	1652	c.1442C>T	c.(1441-1443)CCT>CTT	p.P481L	ADCY4_uc001wov.2_5'Flank|ADCY4_uc001wow.2_5'Flank|ADCY4_uc010toh.1_5'Flank|ADCY4_uc001wox.2_5'Flank|ADCY4_uc001woy.2_5'Flank|ADCY4_uc001woz.3_5'Flank|RIPK3_uc001wpa.2_Missense_Mutation_p.P281L|RIPK3_uc010alq.2_RNA|RIPK3_uc010toi.1_Missense_Mutation_p.P260L	NM_006871	NP_006862	Q9Y572	RIPK3_HUMAN	receptor-interacting serine-threonine kinase 3	481					apoptosis|induction of apoptosis by extracellular signals	cytoplasm	ATP binding|protein binding|transcription coactivator activity			central_nervous_system(2)|ovary(1)|lung(1)	4				GBM - Glioblastoma multiforme(265;0.0181)		CTTGCCCGAAGGTGCCAAGCC	0.552													10	98					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884053	24884053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:24884053C>T	uc001wpf.3	+	9	3416	c.3098C>T	c.(3097-3099)TCC>TTC	p.S1033F		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1033					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						GAGTGCCCGTCCCTTTCGGAG	0.647													8	51					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884937	24884937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:24884937G>A	uc001wpf.3	+	9	4300	c.3982G>A	c.(3982-3984)GGT>AGT	p.G1328S		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1328					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						TGCTGGCTTTGGTCTCTATGT	0.597													23	227					0	0	1	0	0
FOXG1	2290	broad.mit.edu	37	14	29237687	29237687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:29237687C>T	uc001wqe.2	+	1	1401	c.1202C>T	c.(1201-1203)TCC>TTC	p.S401F		NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1	401	Interaction with KDM5B.				axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		GGGACCTACTCCCTCAACCCC	0.672													6	22					0	0	1	0	0
COCH	1690	broad.mit.edu	37	14	31349866	31349866	+	Silent	SNP	G	A	A	rs146395267		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:31349866G>A	uc001wqr.2	+	8	635	c.555G>A	c.(553-555)AAG>AAA	p.K185K	COCH_uc001wqp.2_Silent_p.K185K|COCH_uc001wqq.3_Silent_p.K185K|uc001wqs.2_Intron|COCH_uc001wqt.1_5'UTR	NM_004086	NP_004077	O43405	COCH_HUMAN	cochlin precursor	185	VWFA 1.				sensory perception of sound	proteinaceous extracellular matrix		p.K185K(1)		pancreas(1)|central_nervous_system(1)|skin(1)	3	Hepatocellular(127;0.0877)|Breast(36;0.148)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)|BRCA - Breast invasive adenocarcinoma(188;0.0805)	GBM - Glioblastoma multiforme(265;0.00645)		ATTTACAGAAGAATTTTGTTG	0.423													8	78					0	0	1	0	0
MBIP	51562	broad.mit.edu	37	14	36768293	36768293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:36768293G>A	uc001wtm.2	-	9	1119	c.1031C>T	c.(1030-1032)CCA>CTA	p.P344L	MBIP_uc001wto.2_Missense_Mutation_p.P343L|MBIP_uc010tpy.1_Missense_Mutation_p.P203L|MBIP_uc001wtn.2_3'UTR	NM_016586	NP_057670	Q9NS73	MBIP1_HUMAN	MAP3K12 binding inhibitory protein 1 isoform 1	344	Interaction with MAP3K12.				histone H3 acetylation|inactivation of MAPK activity involved in osmosensory signaling pathway	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm|nucleolus	identical protein binding|protein kinase inhibitor activity				0	all_cancers(3;1.55e-52)|all_epithelial(1;2.69e-62)|Breast(36;0.0505)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)		Lung(8;1.28e-07)|LUAD - Lung adenocarcinoma(9;3e-07)|Epithelial(34;0.0303)|all cancers(34;0.0781)	GBM - Glioblastoma multiforme(112;0.0191)		AGTTTTTCATGGAAGGTGGTG	0.363													10	51					0	0	1	0	0
PAX9	5083	broad.mit.edu	37	14	37145462	37145462	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:37145462C>T	uc001wty.3	+	5	1548	c.831C>T	c.(829-831)TAC>TAT	p.Y277Y	PAX9_uc010amq.2_RNA	NM_006194	NP_006185	P55771	PAX9_HUMAN	paired box 9	277					multicellular organismal development|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)|Breast(36;0.218)		Lung(8;1.12e-09)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.00357)|all cancers(34;0.00998)|LUSC - Lung squamous cell carcinoma(13;0.0189)	GBM - Glioblastoma multiforme(112;0.0181)		TGGCTCCTTACCCTACCCCAG	0.502													5	74					0	0	1	0	0
SSTR1	6751	broad.mit.edu	37	14	38678772	38678772	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:38678772C>T	uc001wul.1	+	3	795	c.178C>T	c.(178-180)CTG>TTG	p.L60L	SSTR1_uc010amu.1_Intron	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	60	Helical; Name=1; (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	CAGCGCCATCCTGATCTCTTT	0.642													6	40					0	0	1	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724073	38724073	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:38724073G>A	uc001wum.1	-	1	1502	c.1155C>T	c.(1153-1155)TCC>TCT	p.S385S		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	385	Extracellular (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		GAGTGGCAGAGGAAGTCGTAG	0.498													3	36					0	0	1	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724753	38724753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:38724753C>T	uc001wum.1	-	1	822	c.475G>A	c.(475-477)GAG>AAG	p.E159K		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	159	Extracellular (Potential).|C-type lectin.					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		CATCGCATCTCCTTCCAGCCT	0.572													5	48					0	0	1	0	0
LRFN5	145581	broad.mit.edu	37	14	42356660	42356660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:42356660C>T	uc001wvm.2	+	3	2030	c.832C>T	c.(832-834)CCT>TCT	p.P278S	LRFN5_uc010ana.2_Missense_Mutation_p.P278S	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	278	Extracellular (Potential).|LRRCT.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		TTGGTCAATTCCTGAAGAAGA	0.473										HNSCC(30;0.082)			10	79					0	0	1	0	0
LRFN5	145581	broad.mit.edu	37	14	42356846	42356846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:42356846G>A	uc001wvm.2	+	3	2216	c.1018G>A	c.(1018-1020)GGA>AGA	p.G340R	LRFN5_uc010ana.2_Missense_Mutation_p.G340R	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	340	Extracellular (Potential).|Ig-like.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		GTATGATAACGGAACACTTGA	0.448										HNSCC(30;0.082)			5	45					0	0	1	0	0
LRFN5	145581	broad.mit.edu	37	14	42361077	42361077	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:42361077G>A	uc001wvm.2	+	4	3208	c.2010G>A	c.(2008-2010)AGG>AGA	p.R670R	LRFN5_uc010ana.2_Intron	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	670	Cytoplasmic (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		ACACTAACAGGAACAACTCAA	0.453										HNSCC(30;0.082)			5	38					0	0	1	0	0
FSCB	84075	broad.mit.edu	37	14	44975557	44975557	+	Missense_Mutation	SNP	T	A	A	rs140155770		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:44975557T>A	uc001wvn.2	-	1	943	c.634A>T	c.(634-636)AAT>TAT	p.N212Y		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	212						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		CTGCTGATATTTTTCTGCCCA	0.403													5	71					0	0	1	0	0
FANCM	57697	broad.mit.edu	37	14	45624608	45624608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:45624608C>T	uc001wwd.3	+	8	1441	c.1342C>T	c.(1342-1344)CCA>TCA	p.P448S	FANCM_uc001wwc.2_Missense_Mutation_p.P448S|FANCM_uc010anf.2_Missense_Mutation_p.P422S|FANCM_uc001wwe.3_Missense_Mutation_p.P53S	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	448					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						TTATAGTCATCCAAAGTTAAA	0.259								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				3	10					0	0	1	0	0
RPS29	6235	broad.mit.edu	37	14	50052766	50052766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:50052766G>A	uc001wwm.2	-	2	94	c.64C>T	c.(64-66)CGT>TGT	p.R22C	SDCCAG1_uc010anj.1_Intron|RPS29_uc001wwl.2_Missense_Mutation_p.R22C	NM_001032	NP_001023	P62273	RS29_HUMAN	ribosomal protein S29 isoform 1	22					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	protein binding|structural constituent of ribosome|zinc ion binding				0	all_epithelial(31;0.00214)|Breast(41;0.0124)					GAACAGACACGACTGTAAGAA	0.507													5	74					0	0	1	0	0
KLHDC2	23588	broad.mit.edu	37	14	50241377	50241377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:50241377C>T	uc001wwx.2	+	3	732	c.332C>T	c.(331-333)TCA>TTA	p.S111L	SDCCAG1_uc010anj.1_Intron|KLHDC2_uc001wwy.2_Missense_Mutation_p.S111L|KLHDC2_uc010anp.2_Missense_Mutation_p.S111L	NM_014315	NP_055130	Q9Y2U9	KLDC2_HUMAN	kelch domain containing 2	111	Kelch 2.					nucleus	protein binding			ovary(1)	1	all_epithelial(31;0.000959)|Breast(41;0.0117)					GGACACCATTCAAGAGGCAAT	0.393													20	108					0	0	1	0	0
SDCCAG1	9147	broad.mit.edu	37	14	50295850	50295850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:50295850G>A	uc001wxc.2	-	13	1222	c.1154C>T	c.(1153-1155)GCC>GTC	p.A385V	SDCCAG1_uc010anj.1_Missense_Mutation_p.A385V|SDCCAG1_uc010tqi.1_Missense_Mutation_p.A385V|SDCCAG1_uc001wxe.2_Missense_Mutation_p.A343V|SDCCAG1_uc001wxd.1_5'UTR|SDCCAG1_uc010anq.1_Missense_Mutation_p.A156V	NM_004713	NP_004704	O60524	NEMF_HUMAN	serologically defined colon cancer antigen 1	385						cytoplasm|nucleus					0	all_epithelial(31;0.000822)|Breast(41;0.0117)	all_lung(585;1.02e-05)		OV - Ovarian serous cystadenocarcinoma(311;5.99e-34)		TTGAGCCTGGGCTTCTTTCAC	0.393													19	68					0	0	1	0	0
NID2	22795	broad.mit.edu	37	14	52496330	52496330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:52496330C>T	uc001wzo.2	-	10	2570	c.2336G>A	c.(2335-2337)GGG>GAG	p.G779E	NID2_uc010tqs.1_Missense_Mutation_p.G779E|NID2_uc010tqt.1_Missense_Mutation_p.G779E|NID2_uc001wzp.2_Missense_Mutation_p.G779E	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	779	EGF-like 2.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					TACACCTGTCCCTGGATGGCA	0.537													7	44					0	0	1	0	0
PTGDR	5729	broad.mit.edu	37	14	52734840	52734840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:52734840C>T	uc001wzq.2	+	1	410	c.308C>T	c.(307-309)TCG>TTG	p.S103L		NM_000953	NP_000944	Q13258	PD2R_HUMAN	prostaglandin D2 receptor	103	Extracellular (Potential).					integral to membrane|plasma membrane	prostaglandin D receptor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Breast(41;0.0639)|all_epithelial(31;0.0887)				Nedocromil(DB00716)	TTGGACAACTCGTTGTGCCAA	0.617													16	119					0	0	1	0	0
PTGDR	5729	broad.mit.edu	37	14	52741629	52741629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:52741629C>T	uc001wzq.2	+	2	1129	c.1027C>T	c.(1027-1029)CTT>TTT	p.L343F		NM_000953	NP_000944	Q13258	PD2R_HUMAN	prostaglandin D2 receptor	343	Cytoplasmic (Potential).					integral to membrane|plasma membrane	prostaglandin D receptor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Breast(41;0.0639)|all_epithelial(31;0.0887)				Nedocromil(DB00716)	CATTAGACCTCTTAGGTACAG	0.388													4	9					0	0	1	0	0
DDHD1	80821	broad.mit.edu	37	14	53522576	53522577	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:53522576_53522577GG>AA	uc001xai.2	-	10	2276_2277	c.2046_2047CC>TT	c.(2044-2049)GTCCAG>GTTTAG	p.Q683*	DDHD1_uc001xaj.2_Nonsense_Mutation_p.Q690*|DDHD1_uc001xah.2_Nonsense_Mutation_p.Q683*|DDHD1_uc001xag.2_Nonsense_Mutation_p.Q265*|DDHD1_uc001xak.1_Nonsense_Mutation_p.Q79*	NM_001160148	NP_001153620	Q8NEL9	DDHD1_HUMAN	DDHD domain containing 1 isoform c	683	DDHD.				lipid catabolic process	cytoplasm	hydrolase activity|metal ion binding			ovary(2)	2	Breast(41;0.037)					CAGTGGATCTGGACAGGTGAAA	0.342													4	40					0	0	1	0	0
SAMD4A	23034	broad.mit.edu	37	14	55034644	55034644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:55034644C>T	uc001xbb.2	+	1	8	c.7C>T	c.(7-9)CGC>TGC	p.R3C	SAMD4A_uc001xba.2_Missense_Mutation_p.R3C|SAMD4A_uc001xbc.2_Missense_Mutation_p.R3C	NM_015589	NP_056404	Q9UPU9	SMAG1_HUMAN	sterile alpha motif domain containing 4 isoform	4					positive regulation of translation	cell junction|cytoplasm|dendrite|synapse|synaptosome	translation repressor activity				0						CATGATGTTTCGCGACCAGGT	0.567													5	64					0	0	1	0	0
SAMD4A	23034	broad.mit.edu	37	14	55243226	55243226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:55243226C>T	uc001xbb.2	+	10	2010	c.2009C>T	c.(2008-2010)TCC>TTC	p.S670F	SAMD4A_uc001xbc.2_Missense_Mutation_p.S582F|SAMD4A_uc001xbg.2_Missense_Mutation_p.S262F	NM_015589	NP_056404	Q9UPU9	SMAG1_HUMAN	sterile alpha motif domain containing 4 isoform	671					positive regulation of translation	cell junction|cytoplasm|dendrite|synapse|synaptosome	translation repressor activity				0						GTGCACACTTCCCCACAGAAC	0.612													27	145					0	0	1	0	0
SOCS4	122809	broad.mit.edu	37	14	55510906	55510906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:55510906C>T	uc001xbo.2	+	3	1712	c.1147C>T	c.(1147-1149)CGG>TGG	p.R383W	SOCS4_uc001xbp.2_Missense_Mutation_p.R383W	NM_199421	NP_955453	Q8WXH5	SOCS4_HUMAN	suppressor of cytokine signaling 4	383	SOCS box.				intracellular signal transduction|negative regulation of signal transduction|regulation of growth					ovary(1)|kidney(1)	2						TCCCTTAATTCGGACTTTCCC	0.423													7	55					0	0	1	0	0
C14orf37	145407	broad.mit.edu	37	14	58604994	58604994	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:58604994C>T	uc001xdc.2	-	2	1194	c.1083G>A	c.(1081-1083)GAG>GAA	p.E361E	C14orf37_uc010tro.1_Silent_p.E399E|C14orf37_uc001xdd.2_Silent_p.E361E|C14orf37_uc001xde.2_Silent_p.E361E	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	361	Extracellular (Potential).					integral to membrane	binding				0						CCTGTGCAGCCTCTGTCCAAG	0.552													21	152					0	0	1	0	0
ARID4A	5926	broad.mit.edu	37	14	58831239	58831239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:58831239C>T	uc001xdp.2	+	20	2686	c.2432C>T	c.(2431-2433)TCA>TTA	p.S811L	ARID4A_uc001xdo.2_Missense_Mutation_p.S811L|ARID4A_uc001xdq.2_Missense_Mutation_p.S811L|ARID4A_uc010apg.1_Missense_Mutation_p.S489L	NM_002892	NP_002883	P29374	ARI4A_HUMAN	retinoblastoma-binding protein 1 isoform I	811					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	transcriptional repressor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|lung(1)	6						AAGATTTCATCATTTGGCCAG	0.333													5	21					0	0	1	0	0
DAAM1	23002	broad.mit.edu	37	14	59821888	59821888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:59821888C>T	uc001xdz.1	+	21	2517	c.2392C>T	c.(2392-2394)CGT>TGT	p.R798C	DAAM1_uc001xea.1_Missense_Mutation_p.R788C|DAAM1_uc001xec.1_RNA	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	798	FH2.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		TGAAGCAATTCGTTCTGGCTC	0.378													8	25					0	0	1	0	0
RTN1	6252	broad.mit.edu	37	14	60194231	60194231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:60194231C>T	uc001xen.1	-	3	1380	c.1171G>A	c.(1171-1173)GGA>AGA	p.G391R	RTN1_uc001xem.1_5'UTR	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	391					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		GTTGGCGGTCCGGACCTGGCC	0.672													3	13					0	0	1	0	0
C14orf39	317761	broad.mit.edu	37	14	60945082	60945082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:60945082G>A	uc001xez.3	-	5	369	c.259C>T	c.(259-261)CGT>TGT	p.R87C	C14orf39_uc010apo.2_Intron	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	87										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		TCATGTTTACGAAAAACATCA	0.269													6	18					0	0	1	0	0
SIX6	4990	broad.mit.edu	37	14	60977969	60977969	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:60977969G>A	uc001xfa.3	+	2	919	c.740G>A	c.(739-741)TGA>TAA	p.*247*		NM_007374	NP_031400	O95475	SIX6_HUMAN	SIX homeobox 6	247					organ morphogenesis|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				OV - Ovarian serous cystadenocarcinoma(108;0.088)		TGCGACATCTGAGTTGCCCAT	0.562													6	69					0	0	1	0	0
TRMT5	57570	broad.mit.edu	37	14	61442775	61442775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:61442775C>T	uc001xff.3	-	4	953	c.862G>A	c.(862-864)GAA>AAA	p.E288K		NM_020810	NP_065861	Q32P41	TRMT5_HUMAN	tRNA methyltransferase 5	288						cytoplasm	tRNA (guanine-N1-)-methyltransferase activity			central_nervous_system(2)|large_intestine(1)	3				OV - Ovarian serous cystadenocarcinoma(108;0.0873)		CGGCTGTGTTCTGTAGACAGA	0.398													9	69					0	0	1	0	0
PRKCH	5583	broad.mit.edu	37	14	61917660	61917660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:61917660G>A	uc001xfn.2	+	6	1108	c.803G>A	c.(802-804)GGA>GAA	p.G268E	PRKCH_uc010tsa.1_Missense_Mutation_p.G107E	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	268	Phorbol-ester/DAG-type 2.				intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		CTGCTCTGGGGAATAATGCGA	0.483													6	40					0	0	1	0	0
SYT16	83851	broad.mit.edu	37	14	62536422	62536422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:62536422C>T	uc001xfu.1	+	2	822	c.625C>T	c.(625-627)CGT>TGT	p.R209C	SYT16_uc010tsd.1_Missense_Mutation_p.R209C	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	209										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		CCAGAGTTTCCGTTCAGTGAC	0.483													7	25					0	0	1	0	0
PPP2R5E	5529	broad.mit.edu	37	14	64006315	64006315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:64006315G>A	uc001xgd.1	-	2	679	c.89C>T	c.(88-90)TCG>TTG	p.S30L	PPP2R5E_uc001xge.2_Missense_Mutation_p.S30L|PPP2R5E_uc010tsh.1_Missense_Mutation_p.S30L|PPP2R5E_uc001xgf.1_RNA|PPP2R5E_uc001xgg.3_Missense_Mutation_p.S30L	NM_006246	NP_006237	Q16537	2A5E_HUMAN	epsilon isoform of regulatory subunit B56,	30					signal transduction	cytoplasm|intracellular membrane-bounded organelle|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00197)|all cancers(60;0.0153)|BRCA - Breast invasive adenocarcinoma(234;0.128)		GGAACTTTGCGACCTCTTCTG	0.468													6	84					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64468761	64468761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:64468761C>T	uc001xgm.2	+	29	3978	c.3748C>T	c.(3748-3750)CAT>TAT	p.H1250Y	SYNE2_uc001xgl.2_Missense_Mutation_p.H1250Y	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	1250	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		CCAGGGATTTCATCTCATTGA	0.413													8	49					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64473926	64473926	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:64473926C>T	uc001xgm.2	+	31	4793	c.4563C>T	c.(4561-4563)GCC>GCT	p.A1521A	SYNE2_uc001xgl.2_Silent_p.A1521A	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	1521	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		ATACCAAAGCCTTGGTCACCG	0.373													13	77					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64519170	64519170	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:64519170C>T	uc001xgm.2	+	48	8769	c.8539C>T	c.(8539-8541)CAA>TAA	p.Q2847*	SYNE2_uc001xgl.2_Nonsense_Mutation_p.Q2847*	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	2847	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AAGGAAGTTTCAACTTATGGT	0.363													6	37					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64547343	64547343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:64547343C>T	uc001xgm.2	+	56	11563	c.11333C>T	c.(11332-11334)TCA>TTA	p.S3778L	SYNE2_uc001xgl.2_Missense_Mutation_p.S3778L|SYNE2_uc010apy.2_Missense_Mutation_p.S140L|SYNE2_uc010apx.1_Missense_Mutation_p.S170L	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	3778	Potential.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TGTAGAACCTCACAGTTGAAT	0.413													6	41					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64612818	64612818	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:64612818C>T	uc001xgm.2	+	84	15746	c.15516C>T	c.(15514-15516)ATC>ATT	p.I5172I	SYNE2_uc001xgl.2_Silent_p.I5172I|SYNE2_uc010apy.2_Silent_p.I1557I|SYNE2_uc001xgn.2_Silent_p.I134I|SYNE2_uc001xgo.2_RNA	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	5172	Spectrin 3.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TAGAAAGTATCACTGAGAGTG	0.318													4	21					0	0	1	0	0
MTHFD1	4522	broad.mit.edu	37	14	64879230	64879230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:64879230C>T	uc001xhb.2	+	4	614	c.227C>T	c.(226-228)ACC>ATC	p.T76I	MTHFD1_uc010aqe.2_Missense_Mutation_p.T112I|MTHFD1_uc010aqf.2_Missense_Mutation_p.T132I	NM_005956	NP_005947	P11586	C1TC_HUMAN	methylenetetrahydrofolate dehydrogenase 1	76	Methylenetetrahydrofolate dehydrogenase and cyclohydrolase.				folic acid metabolic process|folic acid-containing compound biosynthetic process|histidine biosynthetic process|methionine biosynthetic process|one-carbon metabolic process|purine nucleotide biosynthetic process	cytosol|mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NADP+) activity|methylenetetrahydrofolate dehydrogenase|protein binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(108;8.7e-12)|all cancers(60;3.29e-11)|BRCA - Breast invasive adenocarcinoma(234;0.0488)	NADH(DB00157)|Tetrahydrofolic acid(DB00116)	CCAAGAACAACCACAGAATCT	0.423													7	34					0	0	1	0	0
MTHFD1	4522	broad.mit.edu	37	14	64896946	64896946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:64896946G>A	uc001xhb.2	+	13	1696	c.1309G>A	c.(1309-1311)GAG>AAG	p.E437K	MTHFD1_uc010aqe.2_Missense_Mutation_p.E473K|MTHFD1_uc010aqf.2_Missense_Mutation_p.E493K	NM_005956	NP_005947	P11586	C1TC_HUMAN	methylenetetrahydrofolate dehydrogenase 1	437	Formyltetrahydrofolate synthetase.				folic acid metabolic process|folic acid-containing compound biosynthetic process|histidine biosynthetic process|methionine biosynthetic process|one-carbon metabolic process|purine nucleotide biosynthetic process	cytosol|mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NADP+) activity|methylenetetrahydrofolate dehydrogenase|protein binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(108;8.7e-12)|all cancers(60;3.29e-11)|BRCA - Breast invasive adenocarcinoma(234;0.0488)	NADH(DB00157)|Tetrahydrofolic acid(DB00116)	TCCTATGGAAGAGGTAAAGTA	0.483											OREG0022729	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	69					0	0	1	0	0
ZBTB1	22890	broad.mit.edu	37	14	64988994	64988994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:64988994G>A	uc001xhh.3	+	4	1203	c.772G>A	c.(772-774)GAT>AAT	p.D258N	ZBTB1_uc010aqg.2_Missense_Mutation_p.D258N|ZBTB1_uc001xhi.2_Missense_Mutation_p.D258N	NM_001123329	NP_001116801	Q9Y2K1	ZBTB1_HUMAN	zinc finger and BTB domain containing 1 isoform	258					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		all_lung(585;0.000567)|Myeloproliferative disorder(585;0.0255)|all_neural(303;0.0294)		UCEC - Uterine corpus endometrioid carcinoma (185;0.0182)|all cancers(60;3.78e-43)|OV - Ovarian serous cystadenocarcinoma(108;1.22e-20)|BRCA - Breast invasive adenocarcinoma(234;6.75e-06)|KIRC - Kidney renal clear cell carcinoma(182;0.00269)|STAD - Stomach adenocarcinoma(64;0.012)		AGATATTAGAGATGGAAAAGA	0.358													4	20					0	0	1	0	0
C14orf50	145376	broad.mit.edu	37	14	65055950	65055950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:65055950C>T	uc001xhl.1	+	12	1259	c.1163C>T	c.(1162-1164)TCA>TTA	p.S388L	C14orf50_uc001xhm.1_Missense_Mutation_p.S118L	NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376	388										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		AACACAAAATCATTTGGGAGA	0.433													5	37					0	0	1	0	0
PLEKHG3	26030	broad.mit.edu	37	14	65207891	65207892	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:65207891_65207892GG>AA	uc001xho.1	+	16	1925_1926	c.1656_1657GG>AA	c.(1654-1659)CTGGGG>CTAAGG	p.G553R	PLEKHG3_uc001xhn.1_Missense_Mutation_p.G497R|PLEKHG3_uc001xhp.2_Missense_Mutation_p.G674R|PLEKHG3_uc010aqh.1_Missense_Mutation_p.G95R|PLEKHG3_uc001xhq.1_Missense_Mutation_p.G58R	NM_015549	NP_056364	A1L390	PKHG3_HUMAN	pleckstrin homology domain containing, family G,	553					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)	1				all cancers(60;0.00802)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)|BRCA - Breast invasive adenocarcinoma(234;0.0485)		AGGGCCTTCTGGGGATGGACCC	0.584													18	160					0	0	1	0	0
PLEKHG3	26030	broad.mit.edu	37	14	65208639	65208639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:65208639C>T	uc001xho.1	+	16	2673	c.2404C>T	c.(2404-2406)CCC>TCC	p.P802S	PLEKHG3_uc001xhn.1_Missense_Mutation_p.P746S|PLEKHG3_uc001xhp.2_Missense_Mutation_p.P923S|PLEKHG3_uc010aqh.1_Missense_Mutation_p.P344S|PLEKHG3_uc001xhq.1_Missense_Mutation_p.P307S	NM_015549	NP_056364	A1L390	PKHG3_HUMAN	pleckstrin homology domain containing, family G,	802					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)	1				all cancers(60;0.00802)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)|BRCA - Breast invasive adenocarcinoma(234;0.0485)		GGACCCACCTCCCATCTCAGA	0.622													17	87					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65216835	65216835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:65216835C>T	uc001xhr.2	-	33	6694	c.6640G>A	c.(6640-6642)GAG>AAG	p.E2214K	SPTB_uc001xhs.2_Missense_Mutation_p.E2214K|SPTB_uc010aqi.2_Missense_Mutation_p.E910K	NM_001024858	NP_001020029	P11277	SPTB1_HUMAN	spectrin beta isoform a	Error:Variant_position_missing_in_P11277_after_alignment					actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		AAGGTTAGCTCACTGTTCCTG	0.537													11	68					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65237848	65237848	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:65237848C>T	uc001xht.2	-	26	5608	c.5554_splice	c.e26-1	p.V1852_splice	SPTB_uc001xhr.2_Splice_Site_p.V1852_splice|SPTB_uc001xhs.2_Splice_Site_p.V1852_splice|SPTB_uc001xhu.2_Splice_Site_p.V1852_splice|SPTB_uc010aqi.2_Splice_Site_p.V513_splice	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b						actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		ACTGCTGCACCTGTGGTCAGG	0.607													10	105					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65246568	65246568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:65246568C>T	uc001xht.2	-	20	4402	c.4348G>A	c.(4348-4350)GGA>AGA	p.G1450R	SPTB_uc001xhr.2_Missense_Mutation_p.G1450R|SPTB_uc001xhs.2_Missense_Mutation_p.G1450R|SPTB_uc001xhu.2_Missense_Mutation_p.G1450R|SPTB_uc010aqi.2_Missense_Mutation_p.G111R	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1450	Spectrin 11.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TCTGCATCTCCTCCCTCCTCT	0.572													5	125					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65246579	65246579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:65246579C>T	uc001xht.2	-	20	4391	c.4337G>A	c.(4336-4338)GGA>GAA	p.G1446E	SPTB_uc001xhr.2_Missense_Mutation_p.G1446E|SPTB_uc001xhs.2_Missense_Mutation_p.G1446E|SPTB_uc001xhu.2_Missense_Mutation_p.G1446E|SPTB_uc010aqi.2_Missense_Mutation_p.G107E	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1446	Spectrin 11.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TCCCTCCTCTCCCATTGAAGG	0.577													8	136					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65261237	65261237	+	Silent	SNP	C	A	A	rs141777371	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:65261237C>A	uc001xht.2	-	12	1797	c.1743G>T	c.(1741-1743)GGG>GGT	p.G581G	SPTB_uc001xhr.2_Silent_p.G581G|SPTB_uc001xhs.2_Silent_p.G581G|SPTB_uc001xhu.2_Silent_p.G581G	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	581	Spectrin 3.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TCACTTTGTCCCCTTGGATGG	0.542													17	155					3.52763e-06	3.5717e-06	1	1	0
SPTB	6710	broad.mit.edu	37	14	65263298	65263298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:65263298C>T	uc001xht.2	-	10	1372	c.1318G>A	c.(1318-1320)GAA>AAA	p.E440K	SPTB_uc001xhr.2_Missense_Mutation_p.E440K|SPTB_uc001xhs.2_Missense_Mutation_p.E440K|SPTB_uc001xhu.2_Missense_Mutation_p.E440K	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	440	Spectrin 2.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CGCTGGTTTTCACTGAGCCAG	0.602													7	58					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65268514	65268514	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:65268514C>T	uc001xht.2	-	5	659	c.605G>A	c.(604-606)TGG>TAG	p.W202*	SPTB_uc001xhr.2_Nonsense_Mutation_p.W202*|SPTB_uc001xhs.2_Nonsense_Mutation_p.W202*|SPTB_uc001xhu.2_Nonsense_Mutation_p.W202*	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	202	Actin-binding.|CH 2.		W -> R (in HS; Kissimmee).		actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		GCCATCCTTCCAGCTGGAGGT	0.478											OREG0022735	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	125					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65271728	65271728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:65271728C>T	uc001xht.2	-	2	283	c.229G>A	c.(229-231)GAT>AAT	p.D77N	SPTB_uc001xhr.2_Missense_Mutation_p.D77N|SPTB_uc001xhs.2_Missense_Mutation_p.D77N|SPTB_uc001xhu.2_Missense_Mutation_p.D77N	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	77	CH 1.|Actin-binding.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TTGTAGAGATCGGTGATGCGG	0.567													5	69					0	0	1	0	0
RAB15	376267	broad.mit.edu	37	14	65417870	65417870	+	Splice_Site	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:65417870C>A	uc001xhz.2	-	4	328	c.247_splice	c.e4-1	p.G83_splice	FNTB_uc010tsl.1_Intron|FNTB_uc010tsm.1_Intron|RAB15_uc010aqk.2_Splice_Site	NM_198686	NP_941959	P59190	RAB15_HUMAN	RAB15, member RAS onocogene family						protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			ovary(1)	1				all cancers(60;0.00136)|OV - Ovarian serous cystadenocarcinoma(108;0.00593)|BRCA - Breast invasive adenocarcinoma(234;0.0102)		AAAATATCCCCTGAGAGAGAG	0.517													4	53					1	1	1	1	0
FUT8	2530	broad.mit.edu	37	14	66200031	66200031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:66200031C>T	uc001xin.2	+	10	2539	c.1342C>T	c.(1342-1344)CGT>TGT	p.R448C	FUT8_uc001xio.2_Missense_Mutation_p.R448C|FUT8_uc010tsp.1_Missense_Mutation_p.R285C|FUT8_uc001xir.3_RNA|FUT8_uc001xip.2_Missense_Mutation_p.R448C|FUT8_uc001xiq.2_Missense_Mutation_p.R319C|FUT8_uc001xis.2_Missense_Mutation_p.R42C	NM_178155	NP_835368	Q9BYC5	FUT8_HUMAN	fucosyltransferase 8 isoform a	448	Lumenal (Potential).				in utero embryonic development|L-fucose catabolic process|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in Golgi|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	glycoprotein 6-alpha-L-fucosyltransferase activity|SH3 domain binding			ovary(1)	1				all cancers(60;0.00109)|OV - Ovarian serous cystadenocarcinoma(108;0.00242)|BRCA - Breast invasive adenocarcinoma(234;0.0114)		AAATTCACTTCGTGGAGTGAT	0.368													5	41					0	0	1	0	0
VTI1B	10490	broad.mit.edu	37	14	68120182	68120182	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:68120182G>A	uc001xjt.2	-	5	970	c.574C>T	c.(574-576)CGG>TGG	p.R192W	VTI1B_uc010aqp.2_Missense_Mutation_p.R131W|VTI1B_uc001xju.2_Missense_Mutation_p.R151W	NM_006370	NP_006361	Q9UEU0	VTI1B_HUMAN	vesicle transport through interaction with	192	Potential.|Cytoplasmic (Potential).				cell proliferation|cellular membrane fusion|intracellular protein transport|vesicle docking involved in exocytosis	endomembrane system|integral to membrane					0				all cancers(60;0.000344)|OV - Ovarian serous cystadenocarcinoma(108;0.00212)|BRCA - Breast invasive adenocarcinoma(234;0.00941)		AGAATCTTCCGACTTTTGCTC	0.328													9	18					0	0	1	0	0
SMOC1	64093	broad.mit.edu	37	14	70489977	70489977	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:70489977C>T	uc001xls.1	+	11	1357	c.1104C>T	c.(1102-1104)TTC>TTT	p.F368F	SMOC1_uc001xlt.1_Silent_p.F368F	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	368	EF-hand 1.				cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		ACTGGTATTTCAGCCAGCTGG	0.557													14	77					0	0	1	0	0
TTC9	23508	broad.mit.edu	37	14	71134392	71134392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:71134392C>T	uc001xmi.2	+	2	861	c.518C>T	c.(517-519)GCC>GTC	p.A173V		NM_015351	NP_056166	Q92623	TTC9A_HUMAN	tetratricopeptide repeat domain 9	173	TPR 3.						binding				0				all cancers(60;0.00545)|BRCA - Breast invasive adenocarcinoma(234;0.00747)|OV - Ovarian serous cystadenocarcinoma(108;0.0538)		TCTGGTGTGGCCTTCTACCAC	0.473													14	94					0	0	1	0	0
MAP3K9	4293	broad.mit.edu	37	14	71199934	71199934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:71199934G>A	uc001xmm.2	-	11	2152	c.2152C>T	c.(2152-2154)CAT>TAT	p.H718Y	MAP3K9_uc010ttk.1_Missense_Mutation_p.H446Y|MAP3K9_uc001xmk.2_Missense_Mutation_p.H451Y|MAP3K9_uc001xml.2_Missense_Mutation_p.H732Y	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	718					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		GGCTCCTCATGGATTCCATCA	0.522													5	65					0	0	1	0	0
MAP3K9	4293	broad.mit.edu	37	14	71267526	71267526	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:71267526T>C	uc001xmm.2	-	2	678	c.678A>G	c.(676-678)GGA>GGG	p.G226G	MAP3K9_uc001xml.2_Silent_p.G226G	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	226	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		TATTCAAAGGTCCTCCACGAG	0.507													5	59					0	0	1	0	0
RGS6	9628	broad.mit.edu	37	14	72976923	72976923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:72976923G>A	uc001xna.3	+	14	1550	c.1027G>A	c.(1027-1029)GAC>AAC	p.D343N	RGS6_uc010ttn.1_Missense_Mutation_p.D343N|RGS6_uc001xmx.3_Missense_Mutation_p.D343N|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.D343N|RGS6_uc010ttp.1_Missense_Mutation_p.D274N|RGS6_uc001xmz.1_Missense_Mutation_p.D204N	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	343	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		GATATTGAAGGACCAGGTGGG	0.463													16	131					0	0	1	0	0
DPF3	8110	broad.mit.edu	37	14	73181206	73181206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:73181206G>A	uc001xnc.2	-	6	542	c.529C>T	c.(529-531)CGC>TGC	p.R177C	DPF3_uc001xnd.1_RNA|DPF3_uc001xnf.2_RNA|DPF3_uc010ari.1_Missense_Mutation_p.R177C|DPF3_uc010ttq.1_Missense_Mutation_p.R187C	NM_012074	NP_036206	Q92784	DPF3_HUMAN	D4, zinc and double PHD fingers, family 3	177					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex	nucleic acid binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00649)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		GCAGAGCCGCGAGCCTGGGGA	0.597													5	57					0	0	1	0	0
PAPLN	89932	broad.mit.edu	37	14	73717620	73717620	+	Silent	SNP	C	T	T	rs150041669		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:73717620C>T	uc010ttx.1	+	6	634	c.471C>T	c.(469-471)GTC>GTT	p.V157V	PAPLN_uc001xnw.3_Silent_p.V157V|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Silent_p.V157V	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	157						proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		CACAGGTTGTCGGCTGTGATC	0.657													4	46					0	0	1	0	0
HEATR4	399671	broad.mit.edu	37	14	73985833	73985833	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:73985833C>T	uc010tub.1	-	5	1426	c.1104G>A	c.(1102-1104)AAG>AAA	p.K368K	HEATR4_uc010tua.1_Silent_p.K321K	NM_203309	NP_976054			HEAT repeat containing 4											ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00386)|OV - Ovarian serous cystadenocarcinoma(108;0.0719)		TCTGGTCTCTCTTTGCACCAA	0.463													4	94					0	0	1	0	0
HEATR4	399671	broad.mit.edu	37	14	73989665	73989665	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:73989665C>T	uc010tub.1	-	3	514	c.192G>A	c.(190-192)TTG>TTA	p.L64L	HEATR4_uc010tua.1_Silent_p.L17L	NM_203309	NP_976054			HEAT repeat containing 4											ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00386)|OV - Ovarian serous cystadenocarcinoma(108;0.0719)		CAGCCATTTTCAAATATTGGC	0.507													5	92					0	0	1	0	0
ACOT1	641371	broad.mit.edu	37	14	74009849	74009849	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:74009849C>T	uc001xol.1	+	3	954	c.756C>T	c.(754-756)GTC>GTT	p.V252V	HEATR4_uc010tua.1_Intron|ACOT1_uc010tuc.1_Intron	NM_001037161	NP_001032238	Q86TX2	ACOT1_HUMAN	acyl-CoA thioesterase 1	252					acyl-CoA metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process	cytosol	carboxylesterase activity|palmitoyl-CoA hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(108;1.37e-45)|BRCA - Breast invasive adenocarcinoma(234;0.0033)		CGGCTGCTGTCGTCATCAACG	0.567													16	80					0	0	1	0	0
ACOT2	10965	broad.mit.edu	37	14	74041646	74041646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:74041646C>T	uc001xon.3	+	3	1054	c.881C>T	c.(880-882)TCC>TTC	p.S294F	ACOT1_uc010tuc.1_Missense_Mutation_p.S232F|ACOT2_uc001xom.2_Missense_Mutation_p.S97F	NM_006821	NP_006812	P49753	ACOT2_HUMAN	acyl-CoA thioesterase 2	294		Charge relay system (By similarity).			acyl-CoA metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process	mitochondrion	carboxylesterase activity|palmitoyl-CoA hydrolase activity|protein binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0033)|OV - Ovarian serous cystadenocarcinoma(108;0.0639)		CTTGGAATTTCCAAAGGGGGT	0.498													8	92					0	0	1	0	0
ABCD4	5826	broad.mit.edu	37	14	74762643	74762643	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:74762643G>A	uc001xpr.2	-	6	734	c.582C>T	c.(580-582)TTC>TTT	p.F194F	ABCD4_uc001xps.2_Silent_p.F35F|ABCD4_uc001xpt.2_Silent_p.F35F|ABCD4_uc010tur.1_Silent_p.F107F|ABCD4_uc001xpu.2_5'UTR|ABCD4_uc001xpv.2_RNA	NM_005050	NP_005041	O14678	ABCD4_HUMAN	ATP-binding cassette, sub-family D, member 4	194	ABC transmembrane type-1.|Helical; (Potential).					ATP-binding cassette (ABC) transporter complex|integral to membrane|peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			upper_aerodigestive_tract(2)|large_intestine(1)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00153)		TCCCCAGGATGAAATACCCGA	0.552													8	48					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74824491	74824491	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:74824491C>T	uc001xpw.3	+	2	1196	c.1005C>T	c.(1003-1005)TTC>TTT	p.F335F		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	335					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		TTCAGCAGTTCCTCCAGCGGT	0.662													11	67					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74824989	74824989	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:74824989G>A	uc001xpw.3	+	2	1694	c.1503G>A	c.(1501-1503)AGG>AGA	p.R501R		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	501					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		TGCCACTAAGGATGCCCCTGT	0.672													5	91					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74825099	74825099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:74825099C>T	uc001xpw.3	+	2	1804	c.1613C>T	c.(1612-1614)CCT>CTT	p.P538L		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	538					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		AGCCTGTCACCTTCTGCCTTT	0.657													4	85					0	0	1	0	0
ISCA2	122961	broad.mit.edu	37	14	74961580	74961580	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:74961580C>T	uc001xpz.2	+	4	370	c.342C>T	c.(340-342)GCC>GCT	p.A114A	NPC2_uc001xpy.2_5'Flank|NPC2_uc010tus.1_5'Flank	NM_194279	NP_919255	Q86U28	ISCA2_HUMAN	iron-sulfur cluster assembly 2 precursor	114					iron-sulfur cluster assembly	mitochondrion	iron-sulfur cluster binding|metal ion binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00146)		ATAGCTTGGCCTTCGTGAAAG	0.498													4	64					0	0	1	0	0
LTBP2	4053	broad.mit.edu	37	14	74972790	74972790	+	Missense_Mutation	SNP	C	T	T	rs145811412	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:74972790C>T	uc001xqa.2	-	28	4525	c.4138G>A	c.(4138-4140)GAT>AAT	p.D1380N		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1380	EGF-like 16; calcium-binding (Potential).				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		TCCTGGGCATCGTACTCCTCC	0.622													15	71					0	0	1	0	0
LTBP2	4053	broad.mit.edu	37	14	74991854	74991854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:74991854C>T	uc001xqa.2	-	15	2890	c.2503G>A	c.(2503-2505)GAT>AAT	p.D835N		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	835					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		ACCAGCACATCAGTGGAGGGG	0.597													12	82					0	0	1	0	0
LTBP2	4053	broad.mit.edu	37	14	75019046	75019046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:75019046C>T	uc001xqa.2	-	6	1630	c.1243G>A	c.(1243-1245)GAA>AAA	p.E415K		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	415	EGF-like 2.				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		CACCAGCATTCGTCCCTGCCG	0.652													7	41					0	0	1	0	0
YLPM1	56252	broad.mit.edu	37	14	75265376	75265376	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:75265376C>T	uc001xqj.3	+	5	3500	c.3376C>T	c.(3376-3378)CGA>TGA	p.R1126*	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	931	Arg-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		GGGACCTCTTCGAAGGGCTGG	0.637													4	25					0	0	1	0	0
TTLL5	23093	broad.mit.edu	37	14	76330014	76330014	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:76330014C>T	uc001xrx.2	+	29	3536	c.3331C>T	c.(3331-3333)CTG>TTG	p.L1111L	TTLL5_uc010ask.1_Silent_p.L1126L|TTLL5_uc001xrz.2_Silent_p.L686L|TTLL5_uc001xsa.2_Silent_p.L185L	NM_015072	NP_055887	Q6EMB2	TTLL5_HUMAN	tubulin tyrosine ligase-like family, member 5	1111					protein modification process|transcription, DNA-dependent	centrosome|cilium|microtubule basal body|nucleus	tubulin-tyrosine ligase activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.029)		CTTCAGGAGCCTGCAGACAGG	0.488													8	33					0	0	1	0	0
GSTZ1	2954	broad.mit.edu	37	14	77795495	77795495	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:77795495G>A	uc001xtj.2	+	6	654	c.372G>A	c.(370-372)GAG>GAA	p.E124E	GSTZ1_uc001xtk.2_Silent_p.E82E|GSTZ1_uc010ass.2_Silent_p.E69E|GSTZ1_uc001xtm.2_Silent_p.E69E	NM_145870	NP_665877	O43708	MAAI_HUMAN	glutathione transferase zeta 1 isoform 1	124	GST C-terminal.				glutathione metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol|mitochondrion	glutathione peroxidase activity|glutathione transferase activity|maleylacetoacetate isomerase activity|protein homodimerization activity				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0281)	Glutathione(DB00143)	AAGTGGGAGAGGAGATGCAGC	0.577													5	62					0	0	1	0	0
ALKBH1	8846	broad.mit.edu	37	14	78146285	78146285	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:78146285G>A	uc001xuc.1	-	4	493	c.484C>T	c.(484-486)CGA>TGA	p.R162*	ALKBH1_uc001xud.1_RNA	NM_006020	NP_006011	Q13686	ALKB1_HUMAN	alkylated DNA repair protein alkB homolog	162					DNA dealkylation involved in DNA repair|DNA demethylation|oxidative demethylation|RNA repair	mitochondrion	DNA-(apurinic or apyrimidinic site) lyase activity|ferrous iron binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)|skin(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		AGTAAACTTCGGGGTCTCCGT	0.403													6	36					0	0	1	0	0
ADCK1	57143	broad.mit.edu	37	14	78390841	78390841	+	Silent	SNP	C	T	T	rs143243521	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:78390841C>T	uc001xui.2	+	8	999	c.900C>T	c.(898-900)TTC>TTT	p.F300F	ADCK1_uc010tvo.1_RNA|ADCK1_uc001xuj.2_Silent_p.F232F|ADCK1_uc001xuk.1_Silent_p.F174F|ADCK1_uc001xul.2_Silent_p.F7F	NM_020421	NP_065154	Q86TW2	ADCK1_HUMAN	aarF domain containing kinase 1 isoform a	307	Protein kinase.					extracellular region	ATP binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)	3			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0376)		AGATGATCTTCGTCAATGGCT	0.582													13	94					0	0	1	0	0
NRXN3	9369	broad.mit.edu	37	14	78709859	78709859	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:78709859G>A	uc001xum.1	+	2		c.1216G>A						Q9Y4C0	NRX3A_HUMAN	Homo sapiens mRNA for KIAA0743 protein, partial cds.						axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GGCCCTACATGGATGTGGTCA	0.617													4	19					0	0	1	0	0
NRXN3	9369	broad.mit.edu	37	14	80328081	80328081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:80328081G>A	uc001xun.2	+	17	3451	c.2960G>A	c.(2959-2961)GGG>GAG	p.G987E	NRXN3_uc001xum.1_RNA|NRXN3_uc001xup.2_RNA|NRXN3_uc001xuq.2_Missense_Mutation_p.G563E|NRXN3_uc010asw.2_Missense_Mutation_p.G385E|NRXN3_uc001xur.3_Missense_Mutation_p.G358E	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1569	Helical; (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		AGCACAACAGGGATGGTCGTC	0.602													6	25					0	0	1	0	0
TSHR	7253	broad.mit.edu	37	14	81558908	81558908	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:81558908C>T	uc001xvd.1	+	6	657	c.501C>T	c.(499-501)ATC>ATT	p.I167I	TSHR_uc001xvb.1_Silent_p.I167I|TSHR_uc001xvc.2_Silent_p.I167I|TSHR_uc010tvs.1_Silent_p.I167I	NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	167	Extracellular (Potential).|LRR 3.		I -> N (in CHNG1).		cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	TGACGTCAATCCCTGTGAATG	0.408			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						3	25					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86088167	86088168	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:86088167_86088168CC>TT	uc001xvr.2	+	2	1076_1077	c.309_310CC>TT	c.(307-312)TTCCCC>TTTTCC	p.P104S	FLRT2_uc010atd.2_Missense_Mutation_p.P104S	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	104	Extracellular (Potential).|LRR 2.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TGGACGAATTCCCCATGAACCT	0.46													9	67					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86089055	86089055	+	Silent	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:86089055T>G	uc001xvr.2	+	2	1964	c.1197T>G	c.(1195-1197)ACT>ACG	p.T399T	FLRT2_uc010atd.2_Silent_p.T399T	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	399	Extracellular (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CGCCTCCAACTCCTACCACAT	0.537													12	51					0	0	1	0	0
SPATA7	55812	broad.mit.edu	37	14	88904536	88904536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:88904536C>T	uc001xwq.2	+	12	1721	c.1570C>T	c.(1570-1572)CAT>TAT	p.H524Y	SPATA7_uc001xwr.2_Missense_Mutation_p.H492Y|SPATA7_uc001xws.2_Missense_Mutation_p.H460Y|SPATA7_uc001xwt.2_Missense_Mutation_p.H418Y|SPATA7_uc001xwu.2_Intron	NM_018418	NP_060888	Q9P0W8	SPAT7_HUMAN	spermatogenesis-associated protein 7 isoform a	524					response to stimulus|visual perception					ovary(1)	1						GGATGAAAATCATCCAAGTAT	0.333													6	19					0	0	1	0	0
EML5	161436	broad.mit.edu	37	14	89083224	89083224	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:89083224C>T	uc001xxg.2	-	42	5829	c.5643_splice	c.e42-1	p.S1881_splice	EML5_uc001xxf.2_Splice_Site_p.S668_splice|EML5_uc001xxd.2_Splice_Site_p.S46_splice|EML5_uc001xxe.2_Splice_Site_p.S230_splice	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like							cytoplasm|microtubule				ovary(3)	3						TCCTAGAATACTAGAGGGAAG	0.413													5	45					0	0	1	0	0
TTC7B	145567	broad.mit.edu	37	14	91146873	91146873	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:91146873A>T	uc001xyp.2	-	8	1079	c.957T>A	c.(955-957)TTT>TTA	p.F319L	TTC7B_uc010ats.2_RNA	NM_001010854	NP_001010854	Q86TV6	TTC7B_HUMAN	tetratricopeptide repeat domain 7B	319							binding			ovary(2)	2		Melanoma(154;0.222)				CTTGAGGACAAAAAATGCTGC	0.358													5	34					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91755549	91755549	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:91755549G>A	uc010aty.2	-	25	4440	c.4341C>T	c.(4339-4341)GCC>GCT	p.A1447A		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1447					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				GCGGCTGAGAGGCCGCCGGCG	0.632													10	124					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91755687	91755687	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:91755687C>T	uc010aty.2	-	25	4302	c.4203G>A	c.(4201-4203)AAG>AAA	p.K1401K		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1401					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				AGTGGTTCTTCCTGGTTAGAA	0.527													33	181					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91773492	91773492	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:91773492C>T	uc010aty.2	-	18	3184	c.3085G>A	c.(3085-3087)GGG>AGG	p.G1029R		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1029					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				GCTGTCTTCCCCGCAGGGTGC	0.597													6	43					0	0	1	0	0
CATSPERB	79820	broad.mit.edu	37	14	92157894	92157894	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:92157894G>A	uc001xzs.1	-	10	977	c.837C>T	c.(835-837)TCC>TCT	p.S279S		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	279					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				AGTCTGCCCTGGAAAACTAGA	0.333													5	34					0	0	1	0	0
FBLN5	10516	broad.mit.edu	37	14	92361396	92361396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:92361396C>T	uc001xzx.3	-	5	873	c.400G>A	c.(400-402)GAT>AAT	p.D134N	FBLN5_uc010aud.2_Missense_Mutation_p.D139N|FBLN5_uc010aue.2_Missense_Mutation_p.D175N	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	134	EGF-like 2; calcium-binding (Potential).				cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				TGGTGGGAATCTGTTGCACAC	0.537													9	54					0	0	1	0	0
TRIP11	9321	broad.mit.edu	37	14	92470193	92470193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:92470193G>A	uc001xzy.2	-	11	4915	c.4127C>T	c.(4126-4128)TCG>TTG	p.S1376L	TRIP11_uc010auf.1_Missense_Mutation_p.S1112L	NM_004239	NP_004230	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	1376	Potential.				transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			ovary(6)|skin(2)|kidney(2)|central_nervous_system(1)|lung(1)|breast(1)	13				COAD - Colon adenocarcinoma(157;0.223)		GGCAGCAATCGAATCAGACAA	0.378			T	PDGFRB	AML								6	50					0	0	1	0	0
SLC24A4	123041	broad.mit.edu	37	14	92949065	92949065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:92949065C>T	uc001yak.2	+	13	1270	c.1246C>T	c.(1246-1248)CTC>TTC	p.L416F	SLC24A4_uc001yai.2_Missense_Mutation_p.L369F|SLC24A4_uc010twm.1_Missense_Mutation_p.L414F|SLC24A4_uc001yaj.2_Missense_Mutation_p.L397F|SLC24A4_uc010auj.2_Missense_Mutation_p.L305F|SLC24A4_uc010twn.1_Missense_Mutation_p.L189F|SLC24A4_uc001yan.2_Missense_Mutation_p.L127F	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	433	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		CACCTGGCCCCTCATCTTCCT	0.582													11	107					0	0	1	0	0
SLC24A4	123041	broad.mit.edu	37	14	92949073	92949073	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:92949073C>T	uc001yak.2	+	13	1278	c.1254C>T	c.(1252-1254)TTC>TTT	p.F418F	SLC24A4_uc001yai.2_Silent_p.F371F|SLC24A4_uc010twm.1_Silent_p.F416F|SLC24A4_uc001yaj.2_Silent_p.F399F|SLC24A4_uc010auj.2_Silent_p.F307F|SLC24A4_uc010twn.1_Silent_p.F191F|SLC24A4_uc001yan.2_Silent_p.F129F	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	435	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		CCCTCATCTTCCTCCTGTGCG	0.587													6	111					0	0	1	0	0
SLC24A4	123041	broad.mit.edu	37	14	92958030	92958030	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:92958030C>T	uc001yak.2	+	15	1532	c.1508C>T	c.(1507-1509)TCC>TTC	p.S503F	SLC24A4_uc001yai.2_Missense_Mutation_p.S456F|SLC24A4_uc010twm.1_Missense_Mutation_p.S501F|SLC24A4_uc001yaj.2_Missense_Mutation_p.S484F|SLC24A4_uc010auj.2_Missense_Mutation_p.S392F|SLC24A4_uc010twn.1_Missense_Mutation_p.S276F|SLC24A4_uc001yan.2_Missense_Mutation_p.S214F	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	520	Cytoplasmic (Potential).|Alpha-2.					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		ATGGCAGTCTCCAACACCATA	0.468													14	84					0	0	1	0	0
SLC24A4	123041	broad.mit.edu	37	14	92958114	92958114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:92958114G>A	uc001yak.2	+	15	1616	c.1592G>A	c.(1591-1593)GGA>GAA	p.G531E	SLC24A4_uc001yai.2_Missense_Mutation_p.G484E|SLC24A4_uc010twm.1_Missense_Mutation_p.G529E|SLC24A4_uc001yaj.2_Missense_Mutation_p.G512E|SLC24A4_uc010auj.2_Missense_Mutation_p.G420E|SLC24A4_uc010twn.1_Missense_Mutation_p.G304E|SLC24A4_uc001yan.2_Missense_Mutation_p.G242E	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	548	Extracellular (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		GTTAATTATGGATCAACAGTA	0.512													13	40					0	0	1	0	0
SLC24A4	123041	broad.mit.edu	37	14	92959855	92959855	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:92959855C>A	uc001yak.2	+	17	1725	c.1701C>A	c.(1699-1701)GAC>GAA	p.D567E	SLC24A4_uc001yai.2_Missense_Mutation_p.D520E|SLC24A4_uc010twm.1_Missense_Mutation_p.D565E|SLC24A4_uc001yaj.2_Missense_Mutation_p.D548E|SLC24A4_uc010auj.2_3'UTR|SLC24A4_uc010twn.1_Missense_Mutation_p.D340E|SLC24A4_uc001yan.2_Missense_Mutation_p.D278E	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	584	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		GGCGACTGGACCGGAAGCTGG	0.507													5	35					1	1	1	1	0
ITPK1	3705	broad.mit.edu	37	14	93408148	93408148	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:93408148G>A	uc001ybg.2	-	11	1292	c.1003C>T	c.(1003-1005)CTG>TTG	p.L335L	ITPK1_uc001ybe.2_Intron|ITPK1_uc001ybf.2_Silent_p.L216L|ITPK1_uc001ybh.2_Silent_p.L335L	NM_014216	NP_055031	Q13572	ITPK1_HUMAN	inositol 1,3,4-triphosphate 5/6 kinase isoform	335					blood coagulation|inositol trisphosphate metabolic process|signal transduction	cytosol	ATP binding|hydrolase activity|inositol tetrakisphosphate 1-kinase activity|inositol-1,3,4-trisphosphate 5/6-kinase activity|isomerase activity|ligase activity|magnesium ion binding				0		all_cancers(154;0.077)|all_epithelial(191;0.247)		Epithelial(152;0.124)|all cancers(159;0.169)		TGCCTCAGCAGGGCCACGTCC	0.687													6	22					0	0	1	0	0
ITPK1	3705	broad.mit.edu	37	14	93581431	93581431	+	Silent	SNP	G	A	A	rs11845925		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:93581431G>A	uc001ybg.2	-	2	367	c.78C>T	c.(76-78)GCC>GCT	p.A26A	ITPK1_uc001ybe.2_Silent_p.A26A|ITPK1_uc001ybf.2_5'UTR|ITPK1_uc001ybh.2_Silent_p.A26A	NM_014216	NP_055031	Q13572	ITPK1_HUMAN	inositol 1,3,4-triphosphate 5/6 kinase isoform	26					blood coagulation|inositol trisphosphate metabolic process|signal transduction	cytosol	ATP binding|hydrolase activity|inositol tetrakisphosphate 1-kinase activity|inositol-1,3,4-trisphosphate 5/6-kinase activity|isomerase activity|ligase activity|magnesium ion binding				0		all_cancers(154;0.077)|all_epithelial(191;0.247)		Epithelial(152;0.124)|all cancers(159;0.169)		GCTCGGCGAAGGCCTGGAAAT	0.502													5	23					0	0	1	0	0
BTBD7	55727	broad.mit.edu	37	14	93709396	93709396	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:93709396G>A	uc001ybo.2	-	11	2948	c.2622C>T	c.(2620-2622)ATC>ATT	p.I874I	BTBD7_uc010aur.2_Silent_p.I399I|BTBD7_uc010two.1_Silent_p.I694I|BTBD7_uc001ybp.2_Silent_p.I523I	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	874										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		CACCCACCGCGATGTCTGGCA	0.502													9	87					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94038411	94038411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:94038411G>A	uc001ybv.1	+	12	1479	c.1396G>A	c.(1396-1398)GAA>AAA	p.E466K	KIAA1409_uc001ybs.1_Missense_Mutation_p.E466K	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	643						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TCAGTTAAAAGAATTCAGGGA	0.303													5	16					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94088193	94088193	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:94088193C>T	uc001ybv.1	+	28	4232	c.4149C>T	c.(4147-4149)ATC>ATT	p.I1383I	KIAA1409_uc001ybs.1_Silent_p.I1361I	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1538						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CTGCGTATATCGCACAAAGAC	0.498													7	49					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94097238	94097238	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:94097238C>T	uc001ybv.1	+	29	5318	c.5235C>T	c.(5233-5235)AGC>AGT	p.S1745S	KIAA1409_uc001ybs.1_Silent_p.S1723S	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1900						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		AAACAAGTAGCCATTCCTCAA	0.393													5	27					0	0	1	0	0
FAM181A	90050	broad.mit.edu	37	14	94394934	94394934	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:94394934G>A	uc001ybz.1	+	3	796	c.489G>A	c.(487-489)AGG>AGA	p.R163R	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Silent_p.R101R|FAM181A_uc001yca.1_Silent_p.R101R	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	163											0						AGGTGCTGAGGAACCCCTACA	0.632													9	63					0	0	1	0	0
DDX24	57062	broad.mit.edu	37	14	94545435	94545435	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:94545435G>A	uc001ycj.2	-	2	753	c.654C>T	c.(652-654)ATC>ATT	p.I218I	DDX24_uc010twq.1_Silent_p.I175I|DDX24_uc010twr.1_Intron|IFI27L1_uc001ycl.2_5'Flank|IFI27L1_uc001yck.2_5'Flank	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	218	Q motif.				RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		TCAGGGCTTGGATTGGTGTGG	0.547													6	102					0	0	1	0	0
SERPINA10	51156	broad.mit.edu	37	14	94756380	94756380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:94756380C>T	uc001yct.2	-	2	1017	c.551G>A	c.(550-552)AGG>AAG	p.R184K	SERPINA10_uc001ycu.3_Missense_Mutation_p.R184K	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	184					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		ATCAAAATACCTCTTGGATAA	0.443													15	63					0	0	1	0	0
SERPINA10	51156	broad.mit.edu	37	14	94756685	94756685	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:94756685G>A	uc001yct.2	-	2	712	c.246C>T	c.(244-246)TTC>TTT	p.F82F	SERPINA10_uc001ycu.3_Silent_p.F82F	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	82					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		GGCTGAATCCGAAGTTTGAAG	0.562													6	31					0	0	1	0	0
SERPINA6	866	broad.mit.edu	37	14	94776282	94776282	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:94776282C>T	uc001ycv.2	-	3	779	c.675G>A	c.(673-675)GAG>GAA	p.E225E	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	225					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	CCACAGTTGTCTCGTCCACAT	0.557													5	38					0	0	1	0	0
SERPINA6	866	broad.mit.edu	37	14	94780446	94780446	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:94780446C>T	uc001ycv.2	-	2	644	c.540G>A	c.(538-540)GGG>GGA	p.G180G	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	180					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	CGACAATTTTCCCCTGTGTCT	0.478													12	57					0	0	1	0	0
SERPINA1	5265	broad.mit.edu	37	14	94847252	94847252	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:94847252G>A	uc001ycx.3	-	3	1134	c.873C>T	c.(871-873)CTC>CTT	p.L291L	SERPINA1_uc001ycw.3_RNA|SERPINA1_uc010auw.2_Silent_p.L291L|SERPINA1_uc010aux.2_Silent_p.L291L|SERPINA1_uc001ycy.3_Silent_p.L291L|SERPINA1_uc010auy.2_Silent_p.L291L|SERPINA1_uc001ycz.3_Silent_p.L291L|SERPINA1_uc010auz.2_Silent_p.L291L|SERPINA1_uc010ava.2_Silent_p.L291L|SERPINA1_uc001ydb.3_Silent_p.L291L|SERPINA1_uc010avb.2_Silent_p.L291L|SERPINA1_uc001ydc.3_Silent_p.L291L|SERPINA1_uc001yda.1_Silent_p.L291L	NM_000295	NP_000286	P01009	A1AT_HUMAN	serine proteinase inhibitor, clade A, member 1	291					acute-phase response|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen|proteinaceous extracellular matrix	protease binding|serine-type endopeptidase inhibitor activity			skin(1)	1		all_cancers(154;0.0649)|all_epithelial(191;0.223)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)	Alpha-1-proteinase inhibitor(DB00058)	TATCGTGGGTGAGTTCATTTT	0.517									Alpha-1-Antitrypsin_Deficiency				7	95					0	0	1	0	0
SERPINA11	256394	broad.mit.edu	37	14	94912891	94912891	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:94912891A>T	uc001ydd.1	-	3	754	c.694T>A	c.(694-696)TTC>ATC	p.F232I		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	232					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		TCCACAAAGAAACTTTCCTGC	0.488													6	52					0	0	1	0	0
SERPINA11	256394	broad.mit.edu	37	14	94914805	94914805	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:94914805G>A	uc001ydd.1	-	2	367	c.307C>T	c.(307-309)CTG>TTG	p.L103L		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	103					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		TTGAATCCCAGGCCCTCCAGG	0.602													9	41					0	0	1	0	0
SERPINA9	327657	broad.mit.edu	37	14	94931175	94931175	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:94931175T>G	uc001ydf.2	-	4	1134	c.973A>C	c.(973-975)ATC>CTC	p.I325L	SERPINA9_uc001yde.2_Missense_Mutation_p.I225L|SERPINA9_uc010avc.2_Missense_Mutation_p.I176L|SERPINA9_uc001ydg.2_Missense_Mutation_p.I289L|SERPINA9_uc001ydh.1_Missense_Mutation_p.I325L|SERPINA9_uc001ydi.1_Missense_Mutation_p.I289L	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	307					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		AATCTGGGGATGAACACCTCT	0.458													5	33					0	0	1	0	0
SERPINA9	327657	broad.mit.edu	37	14	94933482	94933482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:94933482C>T	uc001ydf.2	-	3	1081	c.920G>A	c.(919-921)AGA>AAA	p.R307K	SERPINA9_uc001yde.2_Missense_Mutation_p.R207K|SERPINA9_uc010avc.2_Missense_Mutation_p.R158K|SERPINA9_uc001ydg.2_Missense_Mutation_p.R271K|SERPINA9_uc001ydh.1_Missense_Mutation_p.R307K|SERPINA9_uc001ydi.1_Missense_Mutation_p.R271K	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	289					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		TCTCAGTGTTCTGGCTGACAA	0.537													6	47					0	0	1	0	0
SERPINA4	5267	broad.mit.edu	37	14	95030123	95030123	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:95030123C>G	uc001ydk.2	+	2	370	c.304C>G	c.(304-306)CTT>GTT	p.L102V	SERPINA4_uc010avd.2_Missense_Mutation_p.L139V|SERPINA4_uc001ydl.2_Missense_Mutation_p.L102V	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	102					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		CAGCCAGATCCTTGAGGGCCT	0.632													7	30					0	0	1	0	0
SERPINA4	5267	broad.mit.edu	37	14	95030176	95030176	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:95030176G>A	uc001ydk.2	+	2	423	c.357G>A	c.(355-357)AGG>AGA	p.R119R	SERPINA4_uc010avd.2_Silent_p.R156R|SERPINA4_uc001ydl.2_Silent_p.R119R	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	119					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		ATGTCCATAGGGGCTTCCAGC	0.617													6	68					0	0	1	0	0
SERPINA4	5267	broad.mit.edu	37	14	95034466	95034466	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:95034466G>A	uc001ydk.2	+	4	990	c.924G>A	c.(922-924)AGG>AGA	p.R308R	SERPINA4_uc010avd.2_Silent_p.R345R|SERPINA4_uc001ydl.2_Silent_p.R308R	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	308					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		CCCCTTTCAGGAATTTTTACA	0.478													17	109					0	0	1	0	0
SERPINA4	5267	broad.mit.edu	37	14	95035857	95035857	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:95035857C>T	uc001ydk.2	+	5	1275	c.1209C>T	c.(1207-1209)TTC>TTT	p.F403F	SERPINA4_uc010avd.2_Silent_p.F440F|SERPINA4_uc001ydl.2_Silent_p.F403F	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	403					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		ACCGGCCCTTCCTTGTGGTGA	0.582													5	58					0	0	1	0	0
SERPINA5	5104	broad.mit.edu	37	14	95053897	95053897	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:95053897C>T	uc001ydm.2	+	3	408	c.198C>T	c.(196-198)TTC>TTT	p.F66F	SERPINA5_uc010ave.2_Silent_p.F66F|SERPINA5_uc001ydn.1_Silent_p.F66F	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	66					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	AGAGCATCTTCTTCTCCCCTG	0.622													8	18					0	0	1	0	0
SERPINA13	388007	broad.mit.edu	37	14	95108047	95108047	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:95108047C>T	uc001ydt.2	+	2	652	c.564C>T	c.(562-564)CCC>CCT	p.P188P		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						GGCAGGGTCCCCGGCTCCTCC	0.627													13	89					0	0	1	0	0
CLMN	79789	broad.mit.edu	37	14	95669314	95669314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:95669314G>A	uc001yef.2	-	9	2488	c.2372C>T	c.(2371-2373)CCC>CTC	p.P791L		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	791						integral to membrane	actin binding				0				Epithelial(152;0.193)		GCTGGCACTGGGGAGGCTCTC	0.637													6	41					0	0	1	0	0
CLMN	79789	broad.mit.edu	37	14	95669758	95669758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:95669758G>A	uc001yef.2	-	9	2044	c.1928C>T	c.(1927-1929)CCT>CTT	p.P643L		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	643						integral to membrane	actin binding				0				Epithelial(152;0.193)		TGGGGCTGAAGGACAGCCTTC	0.478													7	72					0	0	1	0	0
CLMN	79789	broad.mit.edu	37	14	95670708	95670708	+	Silent	SNP	G	A	A	rs111287470	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:95670708G>A	uc001yef.2	-	9	1094	c.978C>T	c.(976-978)TTC>TTT	p.F326F		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	326						integral to membrane	actin binding				0				Epithelial(152;0.193)		CAGTCAGAACGAAGACTTTGC	0.443													14	113					0	0	1	0	0
TCL1A	8115	broad.mit.edu	37	14	96178610	96178610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:96178610C>T	uc001yfc.3	-	2	374	c.244G>A	c.(244-246)GGA>AGA	p.G82R	TCL1A_uc001yfb.3_Missense_Mutation_p.G82R	NM_001098725	NP_001092195	P56279	TCL1A_HUMAN	T-cell leukemia/lymphoma 1A	82					multicellular organismal development	endoplasmic reticulum|microsome				lung(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		CGGTATCGTCCATCAGGGTAG	0.577			T	TRA@	T-CLL								11	133					0	0	1	0	0
BDKRB2	624	broad.mit.edu	37	14	96706869	96706869	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:96706869C>T	uc010avm.1	+	3	400	c.204C>T	c.(202-204)TTC>TTT	p.F68F	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Silent_p.F41F|BDKRB2_uc001yfg.2_Silent_p.F68F	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	68	Helical; Name=1; (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		GGGTGCTGTTCGTGCTGGCCA	0.612													18	131					0	0	1	0	0
AK7	122481	broad.mit.edu	37	14	96917830	96917830	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:96917830C>T	uc001yfn.2	+	10	1065	c.1021C>T	c.(1021-1023)CGA>TGA	p.R341*		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	341	Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		TTTTAATATTCGATGGGCTGC	0.393													5	43					0	0	1	0	0
AK7	122481	broad.mit.edu	37	14	96922783	96922783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:96922783G>A	uc001yfn.2	+	11	1242	c.1198G>A	c.(1198-1200)GAT>AAT	p.D400N		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	400	Adenylate kinase.|Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity	p.D400E(1)		ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		CCAACTGAAGGATGTCATTTC	0.378													8	44					0	0	1	0	0
AK7	122481	broad.mit.edu	37	14	96944950	96944950	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:96944950G>A	uc001yfn.2	+	15	1748	c.1704G>A	c.(1702-1704)GAG>GAA	p.E568E		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	568					cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		TCGACGATGAGACTGTCTTCA	0.468													4	63					0	0	1	0	0
BCL11B	64919	broad.mit.edu	37	14	99697791	99697791	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:99697791G>A	uc001yga.2	-	3	798	c.531C>T	c.(529-531)CTC>CTT	p.L177L	BCL11B_uc001ygb.2_Intron	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	177						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		GGCAGGGCGGGAGAGCGCCCA	0.701			T	TLX3	T-ALL								5	16					0	0	1	0	0
BCL11B	64919	broad.mit.edu	37	14	99723974	99723974	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:99723974G>A	uc001yga.2	-	2	528	c.261C>T	c.(259-261)GCC>GCT	p.A87A	BCL11B_uc001ygb.2_Silent_p.A87A	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	87						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		TGTCATAGCAGGCACCCAAGC	0.587			T	TLX3	T-ALL								5	76					0	0	1	0	0
BCL11B	64919	broad.mit.edu	37	14	99723979	99723979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:99723979C>T	uc001yga.2	-	2	523	c.256G>A	c.(256-258)GGT>AGT	p.G86S	BCL11B_uc001ygb.2_Missense_Mutation_p.G86S	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	86						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		TAGCAGGCACCCAAGCTGCCG	0.587			T	TLX3	T-ALL								13	67					0	0	1	0	0
C14orf68	283600	broad.mit.edu	37	14	100793550	100793550	+	Missense_Mutation	SNP	C	T	T	rs117307527	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:100793550C>T	uc001yhc.2	+	4	243	c.170C>T	c.(169-171)TCG>TTG	p.S57L	C14orf68_uc001yhd.2_5'UTR	NM_207117	NP_997000	Q6Q0C1	S2547_HUMAN	chromosome 14 open reading frame 68	57	Solcar 1.|Helical; Name=2; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding	p.S57L(1)			0		Melanoma(154;0.152)				CGGGGCCTCTCGCTGCCCGTG	0.642													6	122					0	0	1	0	0
WDR25	79446	broad.mit.edu	37	14	100934401	100934401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:100934401C>T	uc010avx.2	+	3	959	c.866C>T	c.(865-867)TCC>TTC	p.S289F	WDR25_uc001yhm.2_Missense_Mutation_p.S281F|WDR25_uc001yhn.2_Missense_Mutation_p.S289F|WDR25_uc010avy.2_Intron|WDR25_uc001yho.2_Missense_Mutation_p.S32F	NM_001161476	NP_001154948	Q64LD2	WDR25_HUMAN	WD repeat domain 25	289											0		Melanoma(154;0.212)				CAGACCTACTCCCTGCACACA	0.632													8	140					0	0	1	0	0
WDR25	79446	broad.mit.edu	37	14	100934477	100934477	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:100934477C>T	uc010avx.2	+	3	1035	c.942C>T	c.(940-942)TTC>TTT	p.F314F	WDR25_uc001yhm.2_Silent_p.F306F|WDR25_uc001yhn.2_Silent_p.F314F|WDR25_uc010avy.2_Intron|WDR25_uc001yho.2_Silent_p.F57F	NM_001161476	NP_001154948	Q64LD2	WDR25_HUMAN	WD repeat domain 25	314	WD 2.										0		Melanoma(154;0.212)				GCTTTGACTTCGCGCTGCACC	0.642													35	152					0	0	1	0	0
WDR25	79446	broad.mit.edu	37	14	100996263	100996263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:100996263G>A	uc010avx.2	+	7	1613	c.1520G>A	c.(1519-1521)CGA>CAA	p.R507Q	WDR25_uc001yhm.2_Missense_Mutation_p.R499Q|WDR25_uc001yhn.2_Missense_Mutation_p.R507Q|WDR25_uc010avy.2_RNA|WDR25_uc001yho.2_Missense_Mutation_p.R250Q	NM_001161476	NP_001154948	Q64LD2	WDR25_HUMAN	WD repeat domain 25	507	WD 6.										0		Melanoma(154;0.212)				ACAGCCAGCCGAGCATGCACA	0.677													7	89					0	0	1	0	0
MIR493	574450	broad.mit.edu	37	14	101335450	101335450	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:101335450C>T	hsa-mir-493|MI0003132	+			c.54C>T																				0						tttgcacattcggtgaaggtc	0.438													9	46					0	0	1	0	0
MIR494	574452	broad.mit.edu	37	14	101495993	101495993	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:101495993C>T	hsa-mir-494|MI0003134	+			c.23C>T			uc010txm.1_5'Flank|hsa-mir-1193|MI0014205_5'Flank|MIR543_hsa-mir-543|MI0005565_5'Flank																	0						AGAGGTTGTCCGTGTTGTCTT	0.418													6	49					0	0	1	0	0
MIR376B	574435	broad.mit.edu	37	14	101506850	101506850	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:101506850C>T	hsa-mir-376b|MI0002466	+			c.78C>T			uc010awc.1_5'Flank|MIR376A1_hsa-mir-376a-1|MI0000784_5'Flank|MIR300_hsa-mir-300|MI0005525_5'Flank|MIR1185-1_hsa-mir-1185-1|MI0003844_5'Flank																	0						GAGGAAAATCCATGTTTTCAG	0.423													4	12					0	0	1	0	0
MIR409	574413	broad.mit.edu	37	14	101531703	101531703	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:101531703C>T	hsa-mir-409|MI0001735	+			c.67C>T			MIR412_hsa-mir-412|MI0002464_5'Flank|uc010txp.1_5'Flank|MIR369_hsa-mir-369|MI0000777_5'Flank|MIR410_hsa-mir-410|MI0002465_5'Flank|MIR656_hsa-mir-656|MI0003678_5'Flank																	0						CGGTGAACCCCTTTTCGGTAT	0.582													7	70					0	0	1	0	0
DIO3	1735	broad.mit.edu	37	14	102028440	102028440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:102028440C>T	uc010txq.1	+	2	753	c.529C>T	c.(529-531)CCC>TCC	p.P177S	DIO3OS_uc001ykd.1_5'Flank|uc001yke.2_5'Flank|uc001ykf.2_5'Flank|uc001ykg.2_5'Flank|uc001ykh.3_5'Flank|MIR1247_hsa-mir-1247|MI0006382_5'Flank	NM_001362	NP_001353	P55073	IOD3_HUMAN	deiodinase, iodothyronine, type III	177	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	endosome membrane|integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|thyroxine 5-deiodinase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(303;0.185)				GGAAGCGCACCCCTCCGACGG	0.637													9	96					0	0	1	0	0
DIO3	1735	broad.mit.edu	37	14	102028503	102028503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:102028503G>A	uc010txq.1	+	2	816	c.592G>A	c.(592-594)GAC>AAC	p.D198N	DIO3OS_uc001ykd.1_5'Flank|uc001yke.2_5'Flank|uc001ykf.2_5'Flank|uc001ykg.2_5'Flank|uc001ykh.3_5'Flank|MIR1247_hsa-mir-1247|MI0006382_5'Flank	NM_001362	NP_001353	P55073	IOD3_HUMAN	deiodinase, iodothyronine, type III	198	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	endosome membrane|integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|thyroxine 5-deiodinase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(303;0.185)				GAGCCTGGAGGACCGGGTCAG	0.647													14	104					0	0	1	0	0
PPP2R5C	5527	broad.mit.edu	37	14	102323171	102323171	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:102323171C>T	uc001yko.2	+	2	383	c.243C>T	c.(241-243)ACC>ACT	p.T81T	PPP2R5C_uc010txr.1_Silent_p.T112T|PPP2R5C_uc001ykk.2_Silent_p.T136T|PPP2R5C_uc010txt.1_Silent_p.T71T|PPP2R5C_uc001ykn.2_Silent_p.T81T|PPP2R5C_uc001ykp.2_Silent_p.T81T|PPP2R5C_uc010txs.1_Silent_p.T71T	NM_002719	NP_002710	Q13362	2A5G_HUMAN	gamma isoform of regulatory subunit B56, protein	81					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|negative regulation of cell proliferation|proteasomal ubiquitin-dependent protein catabolic process|signal transduction	chromosome, centromeric region|nucleus|protein phosphatase type 2A complex	protein binding|protein binding|protein phosphatase type 2A regulator activity|protein phosphatase type 2A regulator activity			ovary(1)|breast(1)	2						AATATATCACCCATAATCGGA	0.388													4	61					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102460559	102460559	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:102460559C>T	uc001yks.2	+	12	3218	c.3054C>T	c.(3052-3054)TTC>TTT	p.F1018F		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1018	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						AAGAGAAATTCTATCGGAATG	0.433													6	101					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102460584	102460584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:102460584C>T	uc001yks.2	+	12	3243	c.3079C>T	c.(3079-3081)CCT>TCT	p.P1027S		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1027	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						AACACGGATGCCTGATGGCCC	0.438													13	94					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102476784	102476784	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:102476784C>T	uc001yks.2	+	31	6557	c.6393C>T	c.(6391-6393)CTC>CTT	p.L2131L		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	2131					cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CTGAAAATCTCCCTGAACAAG	0.388													3	13					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102493581	102493581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:102493581C>T	uc001yks.2	+	45	9006	c.8842C>T	c.(8842-8844)CGT>TGT	p.R2948C		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	2948	AAA 4 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						TACCCTGTCTCGTTTCGTCGC	0.478													43	174					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102500716	102500716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:102500716C>T	uc001yks.2	+	56	10845	c.10681C>T	c.(10681-10683)CGC>TGC	p.R3561C		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	3561	AAA 5 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						TGAGCGTCTTCGCTGGCAGGC	0.517													7	61					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102500766	102500766	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:102500766C>T	uc001yks.2	+	56	10895	c.10731C>T	c.(10729-10731)GCC>GCT	p.A3577A		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	3577	AAA 5 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CAGAAAATGCCATCATGCTGA	0.483													8	74					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102516080	102516080	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:102516080C>T	uc001yks.2	+	76	13709	c.13545C>T	c.(13543-13545)TTC>TTT	p.F4515F		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	4515					cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GTGGCCTGTTCGTGCCTGAGG	0.622													7	34					0	0	1	0	0
HSP90AA1	3320	broad.mit.edu	37	14	102605694	102605695	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:102605694_102605695GG>AA	uc001ykv.3	-	1	392_393	c.47_48CC>TT	c.(46-48)TCC>TTT	p.S16F	WDR20_uc001yky.1_5'Flank|WDR20_uc001yla.2_5'Flank|WDR20_uc001ykz.2_5'Flank|WDR20_uc001ylb.2_5'Flank|WDR20_uc010txu.1_5'Flank|WDR20_uc001ylc.2_5'Flank|WDR20_uc001yld.2_5'Flank|WDR20_uc001yle.2_5'Flank|WDR20_uc001ylf.2_5'Flank	NM_001017963	NP_001017963	P07900	HS90A_HUMAN	heat shock 90kDa protein 1, alpha isoform 1	Error:Variant_position_missing_in_P07900_after_alignment					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			ovary(2)|central_nervous_system(2)|prostate(1)|lung(1)|breast(1)	7					Rifabutin(DB00615)	TGTCCCGAAGGGAGGGCCCAGG	0.728													4	29					0	0	1	0	0
WDR20	91833	broad.mit.edu	37	14	102675509	102675509	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:102675509C>T	uc001ykz.2	+	3	1051	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	WDR20_uc001yky.1_Silent_p.F77F|WDR20_uc001yla.2_Silent_p.F210F|WDR20_uc001ylb.2_Silent_p.F273F|WDR20_uc010txu.1_Silent_p.F365F|WDR20_uc001ylc.2_Intron|WDR20_uc001yld.2_Silent_p.F334F|WDR20_uc001yle.2_Silent_p.F273F|WDR20_uc001ylf.2_Silent_p.F346F	NM_144574	NP_653175	Q8TBZ3	WDR20_HUMAN	WD repeat domain 20 isoform 2	334											0						ATGAGGACTTCCAAGACCTTC	0.502													8	50					0	0	1	0	0
TRAF3	7187	broad.mit.edu	37	14	103341984	103341984	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:103341984G>A	uc001ymc.1	+	5	674	c.321G>A	c.(319-321)AAG>AAA	p.K107K	TRAF3_uc001yme.1_Silent_p.K107K|TRAF3_uc001ymd.1_Silent_p.K107K|TRAF3_uc010txy.1_Silent_p.K107K	NM_145725	NP_663777	Q13114	TRAF3_HUMAN	TNF receptor-associated factor 3 isoform 1	107					apoptosis|induction of apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|regulation of defense response to virus|regulation of interferon-beta production|regulation of proteolysis|toll-like receptor signaling pathway|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|endosome|internal side of plasma membrane|mitochondrion	signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(154;7.87e-06)|all_epithelial(191;0.0024)		Epithelial(152;9.92e-24)|all cancers(159;2.23e-21)|OV - Ovarian serous cystadenocarcinoma(161;7.85e-12)|Colorectal(3;0.0971)		ATTGCTGCAAGAGAGAAATTC	0.403													4	79					0	0	1	0	0
TRAF3	7187	broad.mit.edu	37	14	103371842	103371842	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:103371842C>T	uc001ymc.1	+	12	1781	c.1428C>T	c.(1426-1428)GTC>GTT	p.V476V	TRAF3_uc001yme.1_Silent_p.V451V|TRAF3_uc001ymd.1_Silent_p.V476V|TRAF3_uc010txy.1_Silent_p.V393V	NM_145725	NP_663777	Q13114	TRAF3_HUMAN	TNF receptor-associated factor 3 isoform 1	476	MATH.				apoptosis|induction of apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|regulation of defense response to virus|regulation of interferon-beta production|regulation of proteolysis|toll-like receptor signaling pathway|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|endosome|internal side of plasma membrane|mitochondrion	signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(154;7.87e-06)|all_epithelial(191;0.0024)		Epithelial(152;9.92e-24)|all cancers(159;2.23e-21)|OV - Ovarian serous cystadenocarcinoma(161;7.85e-12)|Colorectal(3;0.0971)		TGTTTTTTGTCATCATGCGTG	0.517													11	111					0	0	1	0	0
C14orf73	91828	broad.mit.edu	37	14	103566731	103566731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:103566731C>T	uc001ymk.2	+	1	251	c.175C>T	c.(175-177)CGG>TGG	p.R59W		NM_001077594	NP_001071062	Q17RC7	EX3L4_HUMAN	hypothetical protein LOC91828	59											0		Melanoma(154;0.155)	Epithelial(46;0.221)			GGCCTTCTCCCGGGCCAGCCA	0.657													3	13					0	0	1	0	0
TNFAIP2	7127	broad.mit.edu	37	14	103593877	103593877	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:103593877C>T	uc001ymm.1	+	2	902	c.771C>T	c.(769-771)TTC>TTT	p.F257F	TNFAIP2_uc010awo.1_Intron|TNFAIP2_uc010txz.1_5'UTR	NM_006291	NP_006282	Q03169	TNAP2_HUMAN	tumor necrosis factor, alpha-induced protein 2	257					angiogenesis|cell differentiation	extracellular space				central_nervous_system(1)	1		Melanoma(154;0.155)	Epithelial(46;0.191)			ACCAGCACTTCGCGGCCCACC	0.677													4	17					0	0	1	0	0
KLC1	3831	broad.mit.edu	37	14	104040507	104040507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:104040507G>A	uc010tyd.1	+	3	425	c.385G>A	c.(385-387)GGT>AGT	p.G129S	C14orf153_uc001ynl.3_Intron|C14orf153_uc010tyc.1_Missense_Mutation_p.G142S	NM_005552	NP_005543	Q07866	KLC1_HUMAN	kinesin light chain 1 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					blood coagulation|microtubule-based movement|stress granule disassembly	cytosol|kinesin complex|microtubule	microtubule motor activity|protein binding				0		Melanoma(154;0.155)|all_epithelial(191;0.19)				AACTGAATCAGGTTAGTGTGT	0.373													11	64					0	0	1	0	0
KLC1	3831	broad.mit.edu	37	14	104121127	104121127	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:104121127C>T	uc001yno.2	+	2	534	c.226C>T	c.(226-228)CTG>TTG	p.L76L	KLC1_uc010tyd.1_Silent_p.L235L|KLC1_uc010tye.1_Silent_p.L72L|KLC1_uc001ynm.1_Silent_p.L76L|KLC1_uc001ynn.1_Silent_p.L72L|KLC1_uc010tyf.1_Silent_p.L76L	NM_182923	NP_891553	Q07866	KLC1_HUMAN	kinesin light chain 1 isoform 2	76					blood coagulation|microtubule-based movement|stress granule disassembly	cytosol|kinesin complex|microtubule	microtubule motor activity|protein binding				0		Melanoma(154;0.155)|all_epithelial(191;0.19)				CCGGAAGTCACTGGAGATGTT	0.418													4	38					0	0	1	0	0
KIF26A	26153	broad.mit.edu	37	14	104640130	104640130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:104640130C>T	uc001yos.3	+	10	1955	c.1955C>T	c.(1954-1956)CCC>CTC	p.P652L		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	652	Kinesin-motor.				blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		GCTGGGGGTCCCCTGTGTCTG	0.692													4	29					0	0	1	0	0
KIF26A	26153	broad.mit.edu	37	14	104641592	104641592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:104641592C>T	uc001yos.3	+	12	2467	c.2467C>T	c.(2467-2469)CGC>TGC	p.R823C		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	823					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		TGCCCTGAGCCGCCACCGGCC	0.687													6	20					0	0	1	0	0
TMEM179	388021	broad.mit.edu	37	14	105063332	105063332	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:105063332G>A	uc001yox.1	-	2	457	c.438C>T	c.(436-438)CCC>CCT	p.P146P		NM_207379	NP_997262	Q6ZVK1	T179A_HUMAN	transmembrane protein 179	146						integral to membrane					0			all cancers(16;0.00276)|OV - Ovarian serous cystadenocarcinoma(23;0.0262)|Epithelial(46;0.058)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.129)		CGCACCTGTGGGGTACGGTGC	0.657													5	34					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105407010	105407010	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:105407010C>A	uc010axc.1	-	7	14898	c.14778G>T	c.(14776-14778)GTG>GTT	p.V4926V	AHNAK2_uc001ypx.2_Silent_p.V4826V	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4926						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCAAGGAGGCCACAAGCTCTT	0.567													10	48					0.0581538	0.0585401	1	1	0
AHNAK2	113146	broad.mit.edu	37	14	105408781	105408781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:105408781G>A	uc010axc.1	-	7	13127	c.13007C>T	c.(13006-13008)TCC>TTC	p.S4336F	AHNAK2_uc001ypx.2_Missense_Mutation_p.S4236F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4336						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCCCTGCATGGAGGGGAGGCT	0.617													38	201					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105408933	105408933	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:105408933G>A	uc010axc.1	-	7	12975	c.12855C>T	c.(12853-12855)TCC>TCT	p.S4285S	AHNAK2_uc001ypx.2_Silent_p.S4185S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4285						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGTCGGCTAGGGACAGGTCAC	0.612													28	254					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105413501	105413501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:105413501G>A	uc010axc.1	-	7	8407	c.8287C>T	c.(8287-8289)CCC>TCC	p.P2763S	AHNAK2_uc001ypx.2_Missense_Mutation_p.P2663S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2763						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TCCGCCTTGGGGCCTTTCAGG	0.607													34	157					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105421878	105421878	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:105421878G>A	uc010axc.1	-	5	528	c.408C>T	c.(406-408)ATC>ATT	p.I136I	AHNAK2_uc001ypx.2_Silent_p.I36I	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	136	PDZ.					nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCTTGACGAAGATCCCCTGGT	0.582													10	65					0	0	1	0	0
BTBD6	90135	broad.mit.edu	37	14	105716968	105716968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:105716968G>A	uc010tyq.1	+	5	1525	c.1417G>A	c.(1417-1419)GTC>ATC	p.V473I	BRF1_uc010tyo.1_Intron|BRF1_uc010typ.1_Intron|BRF1_uc001yql.2_5'Flank|BRF1_uc001yqo.2_5'Flank|BRF1_uc010axg.1_Intron|BRF1_uc001yqp.2_Intron|BRF1_uc001yqn.2_5'Flank|BRF1_uc010axh.1_5'Flank|BRF1_uc010axj.1_5'Flank	NM_033271	NP_150374	Q96KE9	BTBD6_HUMAN	BTB domain protein BDPL	473						cytoplasmic mRNA processing body					0		Melanoma(154;0.226)	OV - Ovarian serous cystadenocarcinoma(23;0.0163)|Epithelial(46;0.0391)	Epithelial(152;0.18)		CGGGACTGGGGTCCAGGGTGG	0.597													11	57					0	0	1	0	0
PACS2	23241	broad.mit.edu	37	14	105849723	105849723	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:105849723C>T	uc001yqt.2	+	16	1816	c.1641C>T	c.(1639-1641)ACC>ACT	p.T547T	PACS2_uc001yqs.2_Silent_p.T472T|PACS2_uc001yqv.2_Silent_p.T551T|PACS2_uc001yqu.2_Silent_p.T551T	NM_015197	NP_056012	Q86VP3	PACS2_HUMAN	phosphofurin acidic cluster sorting protein 2	547					apoptosis|interspecies interaction between organisms	endoplasmic reticulum lumen|mitochondrion				pancreas(1)	1		all_cancers(154;0.0351)|all_epithelial(191;0.153)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.0145)|Epithelial(46;0.036)	Epithelial(152;0.138)		AGCCCCCGACCCCCGTGAAGA	0.647													8	56					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106091091	106091091	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:106091091C>T	uc010tyt.1	-	3648		c.62320G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						GTCATCTCCTCCTGGGATGGG	0.647													8	559					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106208544	106208544	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:106208544C>T	uc010tyt.1	-	3627		c.58670G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_5'UTR|uc001ysf.2_5'UTR					Parts of antibodies, mostly variable regions.												0						TGACGGTCCCCCCAGGAGTTC	0.632													11	89					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106235664	106235664	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:106235664C>T	uc010tyt.1	-	3617		c.58183G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						TGTTCCCCTGCTGCCACCTGC	0.592													28	174					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106321629	106321629	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:106321629C>T	uc010tyt.1	-	3599		c.55767G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						GGTCAGGCCCCTGTGATCCAC	0.622													5	17					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106471463	106471463	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:106471463C>T	uc010tyt.1	-	1891		c.36646G>A								Parts of antibodies, mostly variable regions.												0						GAAGGTGTATCCAGAAGCCTT	0.557													13	81					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106539229	106539229	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:106539229C>T	uc010tyt.1	-	1519		c.31464G>A								Parts of antibodies, mostly variable regions.												0						TCATCCATCCCATCCACTCAA	0.532													7	41					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106602632	106602632	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:106602632C>T	uc010tyt.1	-	1205		c.26945G>A								Parts of antibodies, mostly variable regions.												0						TCCATGTAGGCTGTGCTCGTG	0.507													4	57					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106610487	106610487	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:106610487C>T	uc010tyt.1	-	1167		c.26344G>A								Parts of antibodies, mostly variable regions.												0						CCAGCCCCTTCCCTGGAGCCT	0.557													18	44					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106725351	106725351	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:106725351G>A	uc010tyt.1	-	588		c.18196C>T								Parts of antibodies, mostly variable regions.												0						TAATAGCTGAGACCCACTCCA	0.572													9	127					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106791139	106791139	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:106791139C>T	uc010tyt.1	-	386		c.14479G>A								Parts of antibodies, mostly variable regions.												0						TTACTTCCATCATATGATATA	0.512													9	207					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106791255	106791255	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:106791255C>T	uc010tyt.1	-	386		c.14363G>A								Parts of antibodies, mostly variable regions.												0						CAGGGACCTCCCAGGCTGGAC	0.592													5	99					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106805208	106805208	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:106805208C>T	uc010tyt.1	-	360		c.14000G>A			uc001ysw.1_RNA					Parts of antibodies, mostly variable regions.												0						CTCATTGTGTCTCTCGCACAG	0.612													18	246					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106866677	106866677	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:106866677G>A	uc010tyt.1	-	281		c.11554C>T								Parts of antibodies, mostly variable regions.												0						GCCTCCCCCAGACTCCACCAG	0.562													4	48					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107066012	107066012	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:107066012C>T	uc010tyt.1	-	128		c.6092G>A								Parts of antibodies, mostly variable regions.												0						AGGAGACCTTCGCCGAGGCCC	0.577													6	30					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107114168	107114168	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr14:107114168G>A	uc010tyt.1	-	83		c.3806C>T								Parts of antibodies, mostly variable regions.												0						TAGCAACAAGGAAAACCCAGC	0.468													4	52					0	0	1	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413716	22413716	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:22413716C>T	uc001yuf.2	+	1	15	c.15C>T	c.(13-15)TTC>TTT	p.F5F		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						TGGTGGACTTCCTCTCTGAGA	0.512													16	65					0	0	1	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414283	22414283	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:22414283C>T	uc001yuf.2	+	1	582	c.582C>T	c.(580-582)TTC>TTT	p.F194F		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						TTTCTCTCTTCCACACAGTGA	0.428													3	17					0	0	1	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22872493	22872493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:22872493C>T	uc001yur.3	+	22	3152	c.3022C>T	c.(3022-3024)CCC>TCC	p.P1008S	TUBGCP5_uc001yuq.2_Missense_Mutation_p.P1008S	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	1008					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		AGGATCCTTTCCCCATTGTGA	0.328													10	65					0	0	1	0	0
CYFIP1	23191	broad.mit.edu	37	15	22969327	22969327	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:22969327C>T	uc001yus.2	+	22	2657	c.2553C>T	c.(2551-2553)TTC>TTT	p.F851F	CYFIP1_uc001yut.2_Silent_p.F851F|CYFIP1_uc010aya.1_Silent_p.F879F|CYFIP1_uc001yuu.2_Silent_p.F420F|CYFIP1_uc001yuv.2_Silent_p.F45F	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	851					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		ACTATGACTTCCTGCCCAACT	0.642													17	79					0	0	1	0	0
CYFIP1	23191	broad.mit.edu	37	15	22990076	22990076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:22990076C>T	uc001yus.2	+	24	2800	c.2696C>T	c.(2695-2697)TCC>TTC	p.S899F	CYFIP1_uc001yut.2_Missense_Mutation_p.S899F|CYFIP1_uc010aya.1_Missense_Mutation_p.S927F|CYFIP1_uc001yuu.2_Missense_Mutation_p.S468F|CYFIP1_uc001yuv.2_Missense_Mutation_p.S93F	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	899					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		TTGGCCTACTCCAGCATTTAC	0.547													5	64					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24921323	24921323	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:24921323G>A	uc001ywo.2	+	1	783	c.309G>A	c.(307-309)CGG>CGA	p.R103R		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	103					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TGCCTGCTCGGAACCCCCCGA	0.682													5	48					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922057	24922057	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:24922057G>A	uc001ywo.2	+	1	1517	c.1043G>A	c.(1042-1044)CGA>CAA	p.R348Q		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	348	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CTGTGGGATCGAGGTGAGCTT	0.567													7	32					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922515	24922515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:24922515C>T	uc001ywo.2	+	1	1975	c.1501C>T	c.(1501-1503)CCT>TCT	p.P501S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	501	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCCAACACCTCCTAGCTCCAC	0.517													11	172					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922614	24922614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:24922614C>T	uc001ywo.2	+	1	2074	c.1600C>T	c.(1600-1602)CCA>TCA	p.P534S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	534	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GACTCTTCTTCCAGTCCCTTC	0.527													9	180					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24922732	24922732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:24922732C>T	uc001ywo.2	+	1	2192	c.1718C>T	c.(1717-1719)CCT>CTT	p.P573L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	573					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GCGGTAGACCCTGAAGTAGTT	0.458													5	75					0	0	1	0	0
C15orf2	23742	broad.mit.edu	37	15	24924268	24924268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:24924268C>T	uc001ywo.2	+	1	3728	c.3254C>T	c.(3253-3255)GCC>GTC	p.A1085V		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	1085					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		ACTTCTGCTGCCGCCTACATT	0.542													9	67					0	0	1	0	0
UBE3A	7337	broad.mit.edu	37	15	25616062	25616062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:25616062G>A	uc001zaq.2	-	4	1268	c.1268C>T	c.(1267-1269)CCT>CTT	p.P423L	uc001zae.2_Intron|UBE3A_uc001zar.2_Missense_Mutation_p.P400L|UBE3A_uc001zas.2_Missense_Mutation_p.P420L|UBE3A_uc001zat.2_Missense_Mutation_p.P400L	NM_000462	NP_000453	Q05086	UBE3A_HUMAN	ubiquitin protein ligase E3A isoform 2	423	Interaction with HCV core protein.			P -> L (in Ref. 7; AAA35542).	brain development|interspecies interaction between organisms|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		all_cancers(20;3.47e-21)|Breast(32;0.00123)		all cancers(64;2.78e-08)|Epithelial(43;8.85e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0155)|Lung(196;0.0616)		GTCCACTCGAGGACCTTTCTT	0.433													3	14					0	0	1	0	0
ATP10A	57194	broad.mit.edu	37	15	25925990	25925990	+	Silent	SNP	G	A	A	rs142515299		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:25925990G>A	uc010ayu.2	-	19	3751	c.3645C>T	c.(3643-3645)TTC>TTT	p.F1215F		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	1215	Helical; (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		GGTGGAGCAGGAAAGTGAGCA	0.562													6	114					0	0	1	0	0
OCA2	4948	broad.mit.edu	37	15	28196950	28196950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:28196950G>A	uc001zbh.3	-	18	2041	c.1931C>T	c.(1930-1932)CCT>CTT	p.P644L	OCA2_uc010ayv.2_Missense_Mutation_p.P620L	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	644	Extracellular (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		ATGAATGCCAGGGACAAACGA	0.438									Oculocutaneous_Albinism				4	17					0	0	1	0	0
HERC2	8924	broad.mit.edu	37	15	28375694	28375694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:28375694G>A	uc001zbj.2	-	82	12723	c.12617C>T	c.(12616-12618)TCC>TTC	p.S4206F		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4206	RCC1 17.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		AGAAAACTGGGATCCGCATTC	0.423													16	164					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	28900772	28900772	+	RNA	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:28900772A>C	uc010uan.1	+	3		c.703A>C			uc010azc.2_Intron|uc010uao.1_RNA					Homo sapiens cDNA FLJ55955 complete cds, highly similar to HECT domain and RCC1-like domain-containing protein 2.																		TGGGCTCATCAACAAGTACAT	0.567													5	66					0	0	1	0	0
OTUD7A	161725	broad.mit.edu	37	15	31795975	31795975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:31795975G>A	uc001zfq.2	-	7	1012	c.919C>T	c.(919-921)CAC>TAC	p.H307Y	OTUD7A_uc001zfr.2_Missense_Mutation_p.H314Y	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	307	OTU.|Catalytic (By similarity).|TRAF-binding (By similarity).					cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		ACAAAAACGTGGAACTCTTCC	0.478													30	79					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34072483	34072483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:34072483C>T	uc001zhi.2	+	65	9279	c.9209C>T	c.(9208-9210)ACC>ATC	p.T3070I	RYR3_uc010bar.2_Missense_Mutation_p.T3070I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3070					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CTGGAGCCCACCCTTAATCGC	0.527													4	22					0	0	1	0	0
AVEN	57099	broad.mit.edu	37	15	34160046	34160046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:34160046G>A	uc001zhj.2	-	5	679	c.623C>T	c.(622-624)CCT>CTT	p.P208L		NM_020371	NP_065104	Q9NQS1	AVEN_HUMAN	cell death regulator aven	208					anti-apoptosis|apoptosis	endomembrane system|intracellular|membrane|membrane fraction	protein binding			kidney(1)	1		all_lung(180;1.78e-08)		all cancers(64;1.66e-15)|GBM - Glioblastoma multiforme(113;1.42e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0359)		AACCTCTAAAGGAACTGTACC	0.453													3	38					0	0	1	0	0
CHRM5	1133	broad.mit.edu	37	15	34356376	34356376	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:34356376C>T	uc001zhk.1	+	3	2128	c.1458C>T	c.(1456-1458)GTC>GTT	p.V486V	CHRM5_uc001zhl.1_Silent_p.V486V	NM_012125	NP_036257	P08912	ACM5_HUMAN	cholinergic receptor, muscarinic 5	486	Helical; Name=7; (By similarity).				cell proliferation|inhibition of adenylate cyclase activity by muscarinic acetylcholine receptor signaling pathway	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;1.76e-08)		all cancers(64;4.82e-17)|GBM - Glioblastoma multiforme(113;2.58e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0262)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)	TGTGCTATGTCAATAGCACTG	0.483													5	90					0	0	1	0	0
PGBD4	161779	broad.mit.edu	37	15	34396351	34396351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:34396351G>A	uc001zho.2	+	1	2078	c.1619G>A	c.(1618-1620)CGC>CAC	p.R540H	C15orf24_uc001zhm.2_5'Flank|C15orf24_uc001zhn.2_5'Flank	NM_152595	NP_689808	Q96DM1	PGBD4_HUMAN	piggyBac transposable element derived 4	540											0		all_lung(180;1.76e-08)		all cancers(64;1.22e-17)|GBM - Glioblastoma multiforme(113;1.78e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0242)		CCAACTGGTCGCTGCAAAATT	0.493													6	36					0	0	1	0	0
C15orf29	79768	broad.mit.edu	37	15	34445233	34445233	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:34445233G>A	uc001zhp.2	-	4	356	c.196C>T	c.(196-198)CGT>TGT	p.R66C	C15orf29_uc010ubz.1_5'UTR|C15orf29_uc010uca.1_Missense_Mutation_p.R66C	NM_024713	NP_078989	Q9H079	CO029_HUMAN	hypothetical protein LOC79768	66						nucleolus				ovary(1)	1		all_lung(180;1.86e-06)		all cancers(64;5.49e-18)|GBM - Glioblastoma multiforme(113;8.91e-07)|BRCA - Breast invasive adenocarcinoma(123;0.026)|Lung(196;0.229)		ATCACTTTACGAAGTTTATCT	0.348													11	57					0	0	1	0	0
C15orf55	256646	broad.mit.edu	37	15	34640229	34640229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:34640229C>T	uc001zif.2	+	2	231	c.76C>T	c.(76-78)CCT>TCT	p.P26S	C15orf55_uc010ucc.1_Missense_Mutation_p.P54S|C15orf55_uc010ucd.1_Missense_Mutation_p.P44S	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	26	Pro-rich.					cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		GTCTCCATCCCCTGCACTTCC	0.532			T	BRD3|BRD4	lethal midline carcinoma								6	55					0	0	1	0	0
C15orf55	256646	broad.mit.edu	37	15	34642915	34642915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:34642915C>T	uc001zif.2	+	3	891	c.736C>T	c.(736-738)CGT>TGT	p.R246C	C15orf55_uc010ucc.1_Missense_Mutation_p.R274C|C15orf55_uc010ucd.1_Missense_Mutation_p.R264C	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	246						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		CCCAGTGCTTCGTTCCCTGGC	0.557			T	BRD3|BRD4	lethal midline carcinoma								12	33					0	0	1	0	0
LPCAT4	254531	broad.mit.edu	37	15	34652319	34652319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:34652319G>A	uc001zig.2	-	12	1329	c.1235C>T	c.(1234-1236)GCC>GTC	p.A412V		NM_153613	NP_705841	Q643R3	LPCT4_HUMAN	lysophosphatidylcholine acyltransferase 4	412					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|calcium ion binding				0						TACCTCAAAGGCCAGACGAGT	0.577													5	75					0	0	1	0	0
LPCAT4	254531	broad.mit.edu	37	15	34656262	34656262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:34656262G>A	uc001zig.2	-	5	698	c.604C>T	c.(604-606)CCT>TCT	p.P202S	LPCAT4_uc010bav.1_3'UTR	NM_153613	NP_705841	Q643R3	LPCT4_HUMAN	lysophosphatidylcholine acyltransferase 4	202					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|calcium ion binding				0						GTGCCCTCAGGAAAGAATAGC	0.458													9	124					0	0	1	0	0
AQR	9716	broad.mit.edu	37	15	35207320	35207320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:35207320C>T	uc001ziv.2	-	16	1584	c.1403G>A	c.(1402-1404)AGG>AAG	p.R468K		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	468						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		GTTAAAGTTCCTTAGCAGGTA	0.353													4	31					0	0	1	0	0
RASGRP1	10125	broad.mit.edu	37	15	38803816	38803816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:38803816C>T	uc001zke.3	-	8	1133	c.955G>A	c.(955-957)GAA>AAA	p.E319K	RASGRP1_uc010bbe.2_RNA|RASGRP1_uc010bbf.2_Missense_Mutation_p.E181K|RASGRP1_uc010bbg.2_Missense_Mutation_p.E181K|RASGRP1_uc001zkd.3_Missense_Mutation_p.E319K	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	319	Ras-GEF.				cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		TTATTGATTTCATGTGGGACA	0.498													3	11					0	0	1	0	0
DISP2	85455	broad.mit.edu	37	15	40657350	40657350	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:40657350C>T	uc001zlk.1	+	6	811	c.722C>T	c.(721-723)TCG>TTG	p.S241L		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	241					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		CACTTCAGCTCGAGCTCCCAC	0.612													7	104					0	0	1	0	0
DISP2	85455	broad.mit.edu	37	15	40660824	40660824	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:40660824C>T	uc001zlk.1	+	8	2600	c.2511C>T	c.(2509-2511)TTC>TTT	p.F837F		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	837					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		CGCTGTGTTTCGTGGAGACCC	0.692													5	25					0	0	1	0	0
IVD	3712	broad.mit.edu	37	15	40710373	40710373	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:40710373C>T	uc001zls.3	+	12	1526	c.1192C>T	c.(1192-1194)CGA>TGA	p.R398*	IVD_uc001zlq.2_Nonsense_Mutation_p.R368*|IVD_uc001zlr.2_Nonsense_Mutation_p.R101*	NM_002225	NP_002216	P26440	IVD_HUMAN	isovaleryl Coenzyme A dehydrogenase isoform 1	395					leucine catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|isovaleryl-CoA dehydrogenase activity			ovary(1)	1		all_cancers(109;1.19e-18)|all_epithelial(112;1.52e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.65e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0808)		CCGCTTTCTTCGAGATGCCAA	0.527													6	71					0	0	1	0	0
BAHD1	22893	broad.mit.edu	37	15	40750676	40750676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:40750676C>T	uc001zlu.2	+	2	84	c.13C>T	c.(13-15)CGG>TGG	p.R5W	BAHD1_uc001zlt.2_Missense_Mutation_p.R5W|BAHD1_uc010bbp.1_Missense_Mutation_p.R5W|BAHD1_uc001zlv.2_Missense_Mutation_p.R5W	NM_014952	NP_055767	Q8TBE0	BAHD1_HUMAN	bromo adjacent homology domain containing 1	5					heterochromatin formation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin silencing complex|chromosome	chromatin binding|DNA binding|protein binding				0		all_cancers(109;8.28e-19)|all_epithelial(112;2.64e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.46e-06)|BRCA - Breast invasive adenocarcinoma(123;0.08)		GACACACACTCGGAGAAAGTC	0.597													9	88					0	0	1	0	0
PPP1R14D	54866	broad.mit.edu	37	15	41120711	41120711	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:41120711C>T	uc001zmy.2	-	1	197	c.129G>A	c.(127-129)CCG>CCA	p.P43P	PPP1R14D_uc001zmz.2_Silent_p.P43P	NM_017726	NP_060196	Q9NXH3	PP14D_HUMAN	protein phosphatase 1, regulatory subunit 14D	43					regulation of phosphorylation	cytoplasm	protein phosphatase inhibitor activity				0		all_cancers(109;6.29e-14)|all_epithelial(112;1.48e-11)|Lung NSC(122;5.77e-09)|all_lung(180;1.08e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.88e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		TGGAGGAGTCCGGGTGGGACT	0.607													6	52					0	0	1	0	0
VPS18	57617	broad.mit.edu	37	15	41192646	41192646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:41192646C>T	uc001zne.2	+	4	1969	c.1630C>T	c.(1630-1632)CAT>TAT	p.H544Y		NM_020857	NP_065908	Q9P253	VPS18_HUMAN	vacuolar protein sorting 18	544					endosome organization|lysosome organization|protein transport	HOPS complex|late endosome membrane|lysosomal membrane	metal ion binding|protein binding			ovary(2)|large_intestine(1)	3		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		GGCCTCTATCCATGAGCTGCT	0.562													9	151					0	0	1	0	0
DLL4	54567	broad.mit.edu	37	15	41223735	41223735	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:41223735C>T	uc001zng.1	+	4	749	c.429C>T	c.(427-429)ATC>ATT	p.I143I		NM_019074	NP_061947	Q9NR61	DLL4_HUMAN	delta-like 4 protein precursor	143	Extracellular (Potential).				blood circulation|cell communication|cell differentiation|Notch receptor processing|Notch signaling pathway	integral to membrane|plasma membrane	calcium ion binding|Notch binding			breast(2)	2		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		TCAGCAAGATCGCCATCCAGG	0.612													4	11					0	0	1	0	0
CHAC1	79094	broad.mit.edu	37	15	41247759	41247759	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:41247759C>A	uc001znh.2	+	3	602	c.582C>A	c.(580-582)TAC>TAA	p.Y194*	CHAC1_uc010uct.1_Nonsense_Mutation_p.Y149*	NM_024111	NP_077016	Q9BUX1	CHAC1_HUMAN	ChaC, cation transport regulator-like 1 isoform	194					apoptosis in response to endoplasmic reticulum stress|response to unfolded protein	cytosol	protein binding				0		all_cancers(109;1.42e-13)|all_epithelial(112;1.48e-11)|Lung NSC(122;5.77e-09)|all_lung(180;1.08e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.66e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.163)		ACCCTGGTTACCTGGGCCCTG	0.592													8	110					0.000157383	0.000159026	1	1	0
LTK	4058	broad.mit.edu	37	15	41796211	41796211	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:41796211G>A	uc001zoa.3	-	20	2756	c.2578C>T	c.(2578-2580)CCC>TCC	p.P860S	LTK_uc001zob.3_Missense_Mutation_p.P799S|LTK_uc010ucx.1_Missense_Mutation_p.P730S|LTK_uc010bcg.2_Missense_Mutation_p.P558S	NM_002344	NP_002335	P29376	LTK_HUMAN	leukocyte receptor tyrosine kinase isoform 1	860	Cytoplasmic (Potential).				apoptosis|cell proliferation|phosphatidylinositol 3-kinase cascade|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|central_nervous_system(1)	7		all_cancers(109;1.89e-19)|all_epithelial(112;2.28e-16)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.172)		OV - Ovarian serous cystadenocarcinoma(18;2.1e-17)|GBM - Glioblastoma multiforme(113;1.34e-06)|Colorectal(105;0.0148)|BRCA - Breast invasive adenocarcinoma(123;0.113)		CGATAAGTGGGATTCCAAAGG	0.602										TSP Lung(18;0.14)			5	47					0	0	1	0	0
RPAP1	26015	broad.mit.edu	37	15	41819267	41819267	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:41819267C>T	uc001zod.2	-	14	1871	c.1747_splice	c.e14-1	p.V583_splice		NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1							nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		ACTCCAGGACCTATGGGAGAC	0.552													5	51					0	0	1	0	0
MGA	23269	broad.mit.edu	37	15	42002918	42002918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:42002918C>T	uc001zog.1	+	8	2546	c.2455C>T	c.(2455-2457)CGT>TGT	p.R819C	MGA_uc010ucy.1_Missense_Mutation_p.R819C|MGA_uc010ucz.1_Missense_Mutation_p.R819C	NM_001080541	NP_001074010	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 2	819						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		ACTGAAAAATCGTTCTGCTTT	0.343													4	20					0	0	1	0	0
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42138926	42138927	+	Missense_Mutation	DNP	CT	AC	AC			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:42138926_42138927CT>AC	uc010bco.2	+	18	1941_1942	c.1840_1841CT>AC	c.(1840-1842)CTG>ACG	p.L614T	JMJD7-PLA2G4B_uc001zoo.3_Missense_Mutation_p.L845T|JMJD7-PLA2G4B_uc010bcn.2_Missense_Mutation_p.L845T|JMJD7-PLA2G4B_uc001zoq.3_Missense_Mutation_p.L315T	NM_001114633	NP_001108105	P0C869	PA24B_HUMAN	phospholipase A2, group IVB	614	PLA2c.				arachidonic acid metabolic process|calcium-mediated signaling|glycerophospholipid catabolic process|inflammatory response|parturition	cytosol|early endosome membrane|extracellular region|mitochondrial membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|calcium-dependent phospholipid binding|lysophospholipase activity			large_intestine(1)	1						CCTGTGCCTGCTGGATGTTGGC	0.599													14	107					0	0	1	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42276742	42276742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:42276742C>T	uc001zow.1	-	18	2191	c.2191G>A	c.(2191-2193)GAA>AAA	p.E731K	PLA2G4E_uc010udc.1_Missense_Mutation_p.E203K|PLA2G4E_uc001zov.1_Missense_Mutation_p.E384K	NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	748	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		TTGAGATTTTCATTCTCATCT	0.498													4	48					0	0	1	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42434730	42434730	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:42434730G>A	uc001zoz.2	-	19	2388	c.2325C>T	c.(2323-2325)GCC>GCT	p.A775A	PLA2G4F_uc010bcq.2_Silent_p.A72A|PLA2G4F_uc001zoy.2_Silent_p.A407A|PLA2G4F_uc010bcr.2_Silent_p.A526A|PLA2G4F_uc001zpa.2_Silent_p.A526A|PLA2G4F_uc010bcs.2_Silent_p.A562A	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	775	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		CCTTACCTGGGGCCAGGTGTG	0.612													5	50					0	0	1	0	0
HAUS2	55142	broad.mit.edu	37	15	42851594	42851594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:42851594C>T	uc001zqe.2	+	3	304	c.244C>T	c.(244-246)CCT>TCT	p.P82S	HAUS2_uc010udi.1_Missense_Mutation_p.P51S|HAUS2_uc001zqf.2_5'UTR	NM_018097	NP_060567	Q9NVX0	HAUS2_HUMAN	centrosomal protein 27kDa isoform 1	82	Potential.				cell division|centrosome organization|G2/M transition of mitotic cell cycle|mitosis|spindle assembly	centrosome|cytosol|HAUS complex|microtubule|spindle					0						TGTTGTTCATCCTTTCTTTTT	0.338													5	45					0	0	1	0	0
CDAN1	146059	broad.mit.edu	37	15	43023869	43023869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:43023869G>A	uc001zql.2	-	11	1805	c.1688C>T	c.(1687-1689)ACC>ATC	p.T563I	CDAN1_uc001zqj.2_5'Flank|CDAN1_uc001zqk.2_5'UTR	NM_138477	NP_612486	Q8IWY9	CDAN1_HUMAN	codanin 1	563						integral to membrane	protein binding			ovary(2)	2		all_cancers(109;5.4e-16)|all_epithelial(112;2.97e-14)|Lung NSC(122;1.75e-08)|all_lung(180;5.99e-08)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;2.49e-07)		GCCTGGGAAGGTGGGGGGTGG	0.607													7	76					0	0	1	0	0
TTBK2	146057	broad.mit.edu	37	15	43122227	43122227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:43122227G>A	uc001zqo.2	-	5	780	c.341C>T	c.(340-342)ACC>ATC	p.T114I	TTBK2_uc010bcy.2_Missense_Mutation_p.T45I|TTBK2_uc001zqp.2_Missense_Mutation_p.T114I|TTBK2_uc010bcz.1_Missense_Mutation_p.T114I	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	114	Protein kinase.				cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		GGTACTAATGGTGAATGTGCC	0.443													4	32					0	0	1	0	0
EPB42	2038	broad.mit.edu	37	15	43501608	43501608	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:43501608C>T	uc001zra.3	-	6	996	c.696G>A	c.(694-696)CAG>CAA	p.Q232Q	EPB42_uc001zqz.3_5'UTR|EPB42_uc010bde.2_Silent_p.Q77Q|EPB42_uc001zrb.3_Silent_p.Q262Q|EPB42_uc010udm.1_Silent_p.Q154Q	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	232					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		TGGCCTGGGTCTGCGGGGTGG	0.632													4	64					0	0	1	0	0
TGM5	9333	broad.mit.edu	37	15	43527003	43527003	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:43527003C>T	uc001zrd.1	-	11	1847	c.1839G>A	c.(1837-1839)AAG>AAA	p.K613K	TGM5_uc001zrc.1_Silent_p.K270K|TGM5_uc001zre.1_Silent_p.K531K	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	613					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	AGGTGATGATCTTGTTCACCA	0.517													6	84					0	0	1	0	0
ZSCAN29	146050	broad.mit.edu	37	15	43662001	43662001	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:43662001G>A	uc001zrk.1	-	1	258	c.111C>T	c.(109-111)AGC>AGT	p.S37S	ZSCAN29_uc001zrj.1_5'Flank|ZSCAN29_uc010bdf.1_Silent_p.S36S|ZSCAN29_uc001zrl.1_RNA|ZSCAN29_uc010bdg.1_Silent_p.S36S|ZSCAN29_uc001zrm.2_Silent_p.S36S|TUBGCP4_uc001zrn.2_5'Flank|TUBGCP4_uc001zro.2_5'Flank	NM_152455	NP_689668	Q8IWY8	ZSC29_HUMAN	zinc finger protein 690	37	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.97e-07)		CCCAGAGTTGGCTGAAAGCCT	0.547													6	65					0	0	1	0	0
TP53BP1	7158	broad.mit.edu	37	15	43749238	43749238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:43749238G>A	uc001zrs.2	-	12	1701	c.1553C>T	c.(1552-1554)TCT>TTT	p.S518F	TP53BP1_uc010udp.1_Missense_Mutation_p.S518F|TP53BP1_uc001zrq.3_Missense_Mutation_p.S523F|TP53BP1_uc001zrr.3_Missense_Mutation_p.S523F|TP53BP1_uc010udq.1_Missense_Mutation_p.S523F	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	518					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		TTCACTTGTAGAAAGCATCAA	0.418								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					3	29					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43817099	43817099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:43817099G>A	uc001zrt.2	+	4	3895	c.3428G>A	c.(3427-3429)CGA>CAA	p.R1143Q		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1143						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	TATCCTGACCGAAGCCTCTCT	0.572													5	55					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43817643	43817643	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:43817643C>T	uc001zrt.2	+	4	4439	c.3972C>T	c.(3970-3972)TCC>TCT	p.S1324S		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1324						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GCTCCTTCTCCAAGAGTCCTG	0.488													6	45					0	0	1	0	0
STRC	161497	broad.mit.edu	37	15	43896246	43896246	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:43896246C>T	uc001zsf.2	-	22	4401	c.4323G>A	c.(4321-4323)AAG>AAA	p.K1441K	STRC_uc010bdl.2_Silent_p.K668K|STRC_uc001zse.2_5'UTR	NM_153700	NP_714544	Q7RTU9	STRC_HUMAN	stereocilin precursor	1441					sensory perception of sound	cell surface					0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		GGGCTGCTTTCTTGGCAGCAA	0.557													5	22					0	0	1	0	0
PDIA3	2923	broad.mit.edu	37	15	44048887	44048887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:44048887G>A	uc001zsu.2	+	3	435	c.287G>A	c.(286-288)GGA>GAA	p.G96E	PDIA3_uc010bdp.2_Missense_Mutation_p.G76E|PDIA3_uc010ued.1_5'UTR	NM_005313	NP_005304	P30101	PDIA3_HUMAN	protein disulfide-isomerase A3 precursor	96	Thioredoxin 1.				cell redox homeostasis|glycerol ether metabolic process|post-translational protein modification|protein folding|protein import into nucleus|protein N-linked glycosylation via asparagine|protein retention in ER lumen|signal transduction	endoplasmic reticulum lumen|melanosome	cysteine-type endopeptidase activity|electron carrier activity|phospholipase C activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			ovary(1)|skin(1)	2		all_cancers(109;2.61e-15)|all_epithelial(112;1.12e-12)|Lung NSC(122;2.17e-08)|all_lung(180;2.45e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.48e-07)		AATAAATATGGAGTCAGTGGA	0.393													6	62					0	0	1	0	0
SPG11	80208	broad.mit.edu	37	15	44892688	44892688	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:44892688G>A	uc001ztx.2	-	21	3694	c.3663C>T	c.(3661-3663)ATC>ATT	p.I1221I	SPG11_uc010ueh.1_Silent_p.I1221I|SPG11_uc010uei.1_Silent_p.I1221I|SPG11_uc001zty.1_5'UTR	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	1221	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		TCTTGCTCTTGATTAATTCCT	0.249													7	113					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45392330	45392330	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:45392330G>A	uc010bea.2	-	24	3305	c.3102C>T	c.(3100-3102)TTC>TTT	p.F1034F	DUOX2_uc001zun.2_Silent_p.F1034F	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1034	Cytoplasmic (Potential).|Interaction with TXNDC11 (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		AGTTCTCCACGAAGCGCTTGT	0.562													7	38					0	0	1	0	0
DUOX2	50506	broad.mit.edu	37	15	45398735	45398735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:45398735C>T	uc010bea.2	-	16	2139	c.1936G>A	c.(1936-1938)GGA>AGA	p.G646R	DUOX2_uc001zun.2_Missense_Mutation_p.G646R	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	646	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CCTGGCACTCCATCTTTGGCT	0.552													7	140					0	0	1	0	0
DUOX1	53905	broad.mit.edu	37	15	45428767	45428767	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:45428767C>T	uc001zus.1	+	10	1312	c.966C>T	c.(964-966)TTC>TTT	p.F322F	DUOX1_uc001zut.1_Silent_p.F322F|DUOX1_uc010bee.1_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	322	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		CCTCAGAGTTCGTGGCGGCCT	0.577													6	73					0	0	1	0	0
SLC28A2	9153	broad.mit.edu	37	15	45561593	45561593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:45561593G>A	uc001zva.2	+	14	1491	c.1426G>A	c.(1426-1428)GAC>AAC	p.D476N		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	476					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		AGAGTGGACAGACTGTCCAAT	0.438													6	47					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48773927	48773927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:48773927C>T	uc001zwx.1	-	32	4217	c.3889G>A	c.(3889-3891)GAA>AAA	p.E1297K		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1297	EGF-like 21; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TTCGTGTTTTCACAGGTCCCA	0.373													4	32					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48808502	48808502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:48808502G>A	uc001zwx.1	-	11	1533	c.1205C>T	c.(1204-1206)CCT>CTT	p.P402L		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	402	Pro-rich.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GGGTGGGGGAGGATATTCTGG	0.502													4	33					0	0	1	0	0
CEP152	22995	broad.mit.edu	37	15	49059569	49059569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:49059569G>A	uc001zwy.2	-	16	2144	c.2110C>T	c.(2110-2112)CTC>TTC	p.L704F	CEP152_uc001zwz.2_Missense_Mutation_p.L704F|CEP152_uc001zxa.1_Missense_Mutation_p.L611F	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	704	Potential.				centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		GCCTCAAAGAGCTGCTGCTTC	0.413													5	28					0	0	1	0	0
DTWD1	56986	broad.mit.edu	37	15	49917396	49917396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:49917396G>A	uc001zxq.2	+	3	309	c.32G>A	c.(31-33)CGA>CAA	p.R11Q	DTWD1_uc001zxp.3_RNA|DTWD1_uc001zxs.2_Missense_Mutation_p.R11Q|DTWD1_uc001zxr.2_5'UTR|DTWD1_uc001zxo.2_Missense_Mutation_p.R11Q	NM_020234	NP_064619	Q8N5C7	DTWD1_HUMAN	DTW domain containing 1	11											0		all_lung(180;0.0384)		all cancers(107;3.27e-08)|GBM - Glioblastoma multiforme(94;7.6e-05)		TTTCTCAAACGAAGTGAAGAA	0.328													7	9					0	0	1	0	0
SLC27A2	11001	broad.mit.edu	37	15	50497454	50497454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:50497454G>A	uc001zxw.2	+	4	1098	c.866G>A	c.(865-867)CGG>CAG	p.R289Q	SLC27A2_uc010bes.2_Missense_Mutation_p.R236Q|SLC27A2_uc001zxx.2_Missense_Mutation_p.R54Q	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	289	Cytoplasmic (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		CTTGCCTTGCGGACTAAATTT	0.398													11	50					0	0	1	0	0
HDC	3067	broad.mit.edu	37	15	50544916	50544916	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:50544916G>A	uc001zxz.2	-	8	949	c.843C>T	c.(841-843)TTC>TTT	p.F281F	HDC_uc001zxy.2_Silent_p.F24F|HDC_uc010uff.1_Silent_p.F281F	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	281					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	CGGGGCACAGGAAGGCAGTGC	0.562													8	26					0	0	1	0	0
USP8	9101	broad.mit.edu	37	15	50788176	50788176	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:50788176C>T	uc001zym.3	+	18	3290	c.2790C>T	c.(2788-2790)TTC>TTT	p.F930F	USP8_uc001zyl.3_Silent_p.F930F|USP8_uc001zyn.3_Silent_p.F930F|USP8_uc010ufh.1_Silent_p.F824F|uc001zyo.1_5'Flank|USP8_uc001zyp.3_Silent_p.F97F	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	930					cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		AGGGTCAATTCAAATCTACAG	0.393													4	10					0	0	1	0	0
SPPL2A	84888	broad.mit.edu	37	15	51012139	51012139	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:51012139G>A	uc001zyv.2	-	14	1666	c.1486C>T	c.(1486-1488)CAG>TAG	p.Q496*		NM_032802	NP_116191	Q8TCT8	PSL2_HUMAN	signal peptide peptidase-like 2A	496						integral to membrane	aspartic-type endopeptidase activity				0				all cancers(107;0.000712)|GBM - Glioblastoma multiforme(94;0.00314)		GCACATACCTGATAGCTGTTA	0.393													11	36					0	0	1	0	0
TNFAIP8L3	388121	broad.mit.edu	37	15	51350368	51350368	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:51350368G>A	uc001zyy.2	-	3	689	c.589C>T	c.(589-591)CGG>TGG	p.R197W		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	197											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		AGCTTCTTCCGGAACTTCTCC	0.478													8	70					0	0	1	0	0
TNFAIP8L3	388121	broad.mit.edu	37	15	51397292	51397292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:51397292C>T	uc001zyy.2	-	1	182	c.82G>A	c.(82-84)GGA>AGA	p.G28R		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	28											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		CCTGCATATCCGTTGACCCAC	0.522													22	53					0	0	1	0	0
DMXL2	23312	broad.mit.edu	37	15	51772866	51772866	+	Missense_Mutation	SNP	G	A	A	rs143319761		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:51772866G>A	uc002abf.2	-	24	6662	c.6437C>T	c.(6436-6438)TCG>TTG	p.S2146L	DMXL2_uc002abd.2_Missense_Mutation_p.S216L|DMXL2_uc010ufy.1_Missense_Mutation_p.S2146L|DMXL2_uc010bfa.2_Missense_Mutation_p.S1510L	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2146	Potential.					cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		CTGCAACCACGACTTTCGTCT	0.458													7	88					0	0	1	0	0
DMXL2	23312	broad.mit.edu	37	15	51791010	51791010	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:51791010G>A	uc002abf.2	-	18	4636	c.4411C>T	c.(4411-4413)CTG>TTG	p.L1471L	DMXL2_uc010ufy.1_Silent_p.L1471L|DMXL2_uc010bfa.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1471						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		ATTTGAAACAGCTCTGAATAC	0.358													6	84					0	0	1	0	0
DMXL2	23312	broad.mit.edu	37	15	51791313	51791313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:51791313G>A	uc002abf.2	-	18	4333	c.4108C>T	c.(4108-4110)CAT>TAT	p.H1370Y	DMXL2_uc010ufy.1_Missense_Mutation_p.H1370Y|DMXL2_uc010bfa.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1370						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TTTACTAAATGAGAGAGAATG	0.413													16	53					0	0	1	0	0
DMXL2	23312	broad.mit.edu	37	15	51792133	51792133	+	Silent	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:51792133A>T	uc002abf.2	-	18	3513	c.3288T>A	c.(3286-3288)GTT>GTA	p.V1096V	DMXL2_uc010ufy.1_Silent_p.V1096V|DMXL2_uc010bfa.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1096						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		ATTCTTTAGAAACAAAACCAT	0.393													4	11					0	0	1	0	0
LEO1	123169	broad.mit.edu	37	15	52242083	52242083	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:52242083G>A	uc002abo.2	-	10	1736	c.1720C>T	c.(1720-1722)CGA>TGA	p.R574*	LEO1_uc010bfd.2_Nonsense_Mutation_p.R514*	NM_138792	NP_620147	Q8WVC0	LEO1_HUMAN	Leo1, Paf1/RNA polymerase II complex component,	574					histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding				0				all cancers(107;0.00264)		TCATCGTATCGATCAGGTTCC	0.527													18	88					0	0	1	0	0
GNB5	10681	broad.mit.edu	37	15	52433395	52433395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:52433395G>A	uc002abt.1	-	7	634	c.569C>T	c.(568-570)TCT>TTT	p.S190F	GNB5_uc002abr.1_Missense_Mutation_p.S148F|GNB5_uc002abs.1_Intron	NM_016194	NP_057278	O14775	GBB5_HUMAN	guanine nucleotide-binding protein, beta-5	190						heterotrimeric G-protein complex	GTPase activity|signal transducer activity			lung(1)	1				all cancers(107;0.0163)		CATAGCAACAGACTTCTTTTT	0.473													5	52					0	0	1	0	0
MYO5C	55930	broad.mit.edu	37	15	52536615	52536615	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:52536615G>A	uc010bff.2	-	19	2465	c.2328C>T	c.(2326-2328)TTC>TTT	p.F776F	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	776	IQ 1.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TCTCTCGGAGGAATTTTTTCC	0.483													7	68					0	0	1	0	0
MYO5C	55930	broad.mit.edu	37	15	52553136	52553136	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:52553136G>A	uc010bff.2	-	10	1373	c.1236C>T	c.(1234-1236)TTC>TTT	p.F412F	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA|MYO5C_uc010ugc.1_3'UTR	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	412	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TCTCCACAATGAAGTCGAACA	0.473													24	69					0	0	1	0	0
KIAA1370	56204	broad.mit.edu	37	15	52897394	52897394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:52897394G>A	uc002acg.3	-	7	2549	c.2396C>T	c.(2395-2397)TCC>TTC	p.S799F	KIAA1370_uc002ach.3_RNA|KIAA1370_uc010bfg.1_Missense_Mutation_p.S711F|KIAA1370_uc010ugf.1_Missense_Mutation_p.S806F	NM_019600	NP_062546	Q32MH5	K1370_HUMAN	hypothetical protein LOC56204	799											0				all cancers(107;0.0803)		TCCATCCAAGGAATGAAAATT	0.328													6	85					0	0	1	0	0
ONECUT1	3175	broad.mit.edu	37	15	53081290	53081290	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:53081290G>A	uc002aci.1	-	1	920	c.792C>T	c.(790-792)CTC>CTT	p.L264L		NM_004498	NP_004489	Q9UBC0	HNF6_HUMAN	one cut homeobox 1	264					endocrine pancreas development	nucleus	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding				0				all cancers(107;0.0708)		CTGTGCCCAGGAGTTGCCCGT	0.647													7	151					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54586244	54586244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:54586244G>A	uc002ack.2	+	9	3970	c.3970G>A	c.(3970-3972)GAT>AAT	p.D1324N	UNC13C_uc002acl.2_Missense_Mutation_p.D154N	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1324					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TGGAGAAATGGATGTCTGGTA	0.348													22	73					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57730924	57730924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:57730924G>A	uc002aeg.2	+	2	803	c.727G>A	c.(727-729)GAG>AAG	p.E243K	CGNL1_uc010bfw.2_Missense_Mutation_p.E243K	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	243	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		CTGCACCAAGGAGAGGGTGGG	0.547													6	100					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57839673	57839673	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:57839673C>T	uc002aeg.2	+	19	3970	c.3894C>T	c.(3892-3894)GTC>GTT	p.V1298V	CGNL1_uc010bfw.2_Silent_p.V1298V	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	1298	Tail.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		ACAGCACCGTCGCCAGCCAGA	0.592													5	105					0	0	1	0	0
GCOM1	145781	broad.mit.edu	37	15	57910339	57910339	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:57910339G>A	uc002aei.2	+	3	390	c.271G>A	c.(271-273)GGG>AGG	p.G91R	GCOM1_uc002aej.2_Missense_Mutation_p.G91R|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Missense_Mutation_p.G91R|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.G91R|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	91					intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						GGTGGTGTATGGGTGGTCCAC	0.448													4	40					0	0	1	0	0
GCOM1	145781	broad.mit.edu	37	15	57967172	57967172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:57967172G>A	uc002aei.2	+	12	1329	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K	GCOM1_uc002aej.2_Missense_Mutation_p.E376K|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Missense_Mutation_p.E404K|GCOM1_uc002aeq.2_Intron|GCOM1_uc002aen.2_Intron|GCOM1_uc010bfy.2_Intron|GCOM1_uc002aeo.2_Missense_Mutation_p.E404K|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_Intron|GCOM1_uc002aer.1_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	404	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						CCAGAATAATGAACTACAAAG	0.383													12	24					0	0	1	0	0
GCOM1	145781	broad.mit.edu	37	15	58004349	58004349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:58004349C>T	uc002aem.2	+	13	1591	c.1472C>T	c.(1471-1473)TCC>TTC	p.S491F	GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Intron|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA|GRINL1A_uc002aes.2_Missense_Mutation_p.S78F|GRINL1A_uc010ugu.1_RNA|GRINL1A_uc002aet.3_Missense_Mutation_p.S309F|GRINL1A_uc002aeu.3_Missense_Mutation_p.S152F	NM_001018090	NP_001018100	P0CAP1	GCOM1_HUMAN	GRINL1A combined protein isoform 1	376	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						ATAGAAGAATCCTTGGCACTT	0.443													7	67					0	0	1	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58253006	58253006	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:58253006G>A	uc002aex.2	-	12	1504	c.1446C>T	c.(1444-1446)CCC>CCT	p.P482P	ALDH1A2_uc002aey.2_Silent_p.P444P|ALDH1A2_uc010ugv.1_Silent_p.P461P|ALDH1A2_uc010ugw.1_Silent_p.P453P|ALDH1A2_uc002aew.2_Silent_p.P386P	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	482					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	ATCCCCCAAAGGGGCTCTGGG	0.423													3	22					0	0	1	0	0
SLTM	79811	broad.mit.edu	37	15	59179696	59179696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:59179696G>A	uc002afp.2	-	18	2507	c.2419C>T	c.(2419-2421)CCT>TCT	p.P807S	SLTM_uc002afn.2_Missense_Mutation_p.P349S|SLTM_uc002afo.2_Missense_Mutation_p.P789S|SLTM_uc002afq.2_Missense_Mutation_p.P376S|SLTM_uc010bgd.2_Missense_Mutation_p.P376S	NM_024755	NP_079031	Q9NWH9	SLTM_HUMAN	modulator of estrogen induced transcription	807	Arg/Glu-rich.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)	1						CGTGCAGTAGGTCGTGCTTTT	0.418													5	74					0	0	1	0	0
MYO1E	4643	broad.mit.edu	37	15	59494600	59494600	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:59494600G>A	uc002aga.2	-	16	1995	c.1623C>T	c.(1621-1623)TTC>TTT	p.F541F		NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	541	Myosin head-like.				actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		AAGACTTTATGAAAGGCCTGG	0.448													7	79					0	0	1	0	0
LDHAL6B	92483	broad.mit.edu	37	15	59499621	59499621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:59499621G>A	uc002agb.2	+	1	580	c.482G>A	c.(481-483)CGA>CAA	p.R161Q	MYO1E_uc002aga.2_Intron	NM_033195	NP_149972	Q9BYZ2	LDH6B_HUMAN	lactate dehydrogenase A-like 6B	161					glycolysis	cytoplasm	L-lactate dehydrogenase activity|protein binding				0					NADH(DB00157)	TTAGTCCAGCGAAATGTGGCC	0.418													31	109					0	0	1	0	0
LDHAL6B	92483	broad.mit.edu	37	15	59499966	59499966	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:59499966G>A	uc002agb.2	+	1	925	c.827G>A	c.(826-828)TGG>TAG	p.W276*	MYO1E_uc002aga.2_Intron	NM_033195	NP_149972	Q9BYZ2	LDH6B_HUMAN	lactate dehydrogenase A-like 6B	276					glycolysis	cytoplasm	L-lactate dehydrogenase activity|protein binding				0					NADH(DB00157)	CCTGAGCAATGGAAAAATGTC	0.423													7	29					0	0	1	0	0
NARG2	79664	broad.mit.edu	37	15	60747314	60747314	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:60747314G>A	uc002agp.2	-	8	1066	c.831C>T	c.(829-831)CAC>CAT	p.H277H	NARG2_uc002ago.2_Silent_p.H140H|NARG2_uc002agq.3_5'Flank|NARG2_uc010bgk.2_Silent_p.H277H|NARG2_uc002agr.1_Silent_p.H277H	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	277						nucleus				ovary(1)|lung(1)	2						CTATCTGAGGGTGATATCTGG	0.328													4	45					0	0	1	0	0
RORA	6095	broad.mit.edu	37	15	60970872	60970872	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:60970872C>T	uc002agx.2	-	2	265	c.180G>A	c.(178-180)ACG>ACA	p.T60T		NM_134261	NP_599023	P35398	RORA_HUMAN	RAR-related orphan receptor A isoform a	Error:Variant_position_missing_in_P35398_after_alignment					positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			large_intestine(1)|ovary(1)	2						GTGTCTTCTTCGTTACTGAGA	0.413													5	9					0	0	1	0	0
VPS13C	54832	broad.mit.edu	37	15	62219479	62219479	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:62219479G>A	uc002agz.2	-	52	6401	c.6327C>T	c.(6325-6327)ATC>ATT	p.I2109I	VPS13C_uc002aha.2_Silent_p.I2066I|VPS13C_uc002ahb.1_Silent_p.I2109I|VPS13C_uc002ahc.1_Silent_p.I2066I	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	2109					protein localization					ovary(2)	2						CTGGATCTGTGATCATGGCCT	0.423													42	103					0	0	1	0	0
VPS13C	54832	broad.mit.edu	37	15	62241774	62241774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:62241774G>A	uc002agz.2	-	42	4701	c.4627C>T	c.(4627-4629)CAT>TAT	p.H1543Y	VPS13C_uc002aha.2_Missense_Mutation_p.H1500Y|VPS13C_uc002ahb.1_Missense_Mutation_p.H1543Y|VPS13C_uc002ahc.1_Missense_Mutation_p.H1500Y	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	1543					protein localization					ovary(2)	2						GCTTCCAAATGAAGTACTAAG	0.378													4	11					0	0	1	0	0
VPS13C	54832	broad.mit.edu	37	15	62254087	62254087	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:62254087G>A	uc002agz.2	-	35	3683	c.3609C>T	c.(3607-3609)TTC>TTT	p.F1203F	VPS13C_uc002aha.2_Silent_p.F1160F|VPS13C_uc002ahb.1_Silent_p.F1203F|VPS13C_uc002ahc.1_Silent_p.F1160F	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	1203					protein localization					ovary(2)	2						AATTATTCAGGAAGTTCTGTG	0.413													4	7					0	0	1	0	0
LACTB	114294	broad.mit.edu	37	15	63419597	63419597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:63419597C>T	uc002alw.2	+	4	700	c.661C>T	c.(661-663)CGT>TGT	p.R221C	LACTB_uc002alv.2_Missense_Mutation_p.R221C	NM_032857	NP_116246	P83111	LACTB_HUMAN	lactamase, beta isoform a	221						mitochondrion	hydrolase activity				0						AAGTGGAATTCGTCATTATGA	0.299													6	83					0	0	1	0	0
CA12	771	broad.mit.edu	37	15	63632593	63632593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:63632593C>T	uc002amc.2	-	7	797	c.641G>A	c.(640-642)AGG>AAG	p.R214K	CA12_uc002amd.2_Missense_Mutation_p.R214K|CA12_uc002ame.2_Missense_Mutation_p.R154K	NM_001218	NP_001209	O43570	CAH12_HUMAN	carbonic anhydrase XII isoform 1 precursor	214	Extracellular (Potential).				one-carbon metabolic process	integral to membrane	carbonate dehydratase activity|zinc ion binding			ovary(1)	1					Acetazolamide(DB00819)	TTCAGCGGTCCTCTCCGGAAG	0.567													14	36					0	0	1	0	0
USP3	9960	broad.mit.edu	37	15	63850313	63850313	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:63850313C>T	uc002amf.2	+	6	588	c.459C>T	c.(457-459)ACC>ACT	p.T153T	USP3_uc010uii.1_Intron|USP3_uc002amg.2_Silent_p.T68T|USP3_uc002amh.2_Silent_p.T131T|USP3_uc010uij.1_Silent_p.T109T|USP3_uc010uik.1_Intron|USP3_uc010bgs.2_Silent_p.T136T|USP3_uc002ami.2_5'UTR	NM_006537	NP_006528	Q9Y6I4	UBP3_HUMAN	ubiquitin thiolesterase 3	153					DNA repair|histone deubiquitination|mitotic cell cycle|regulation of protein stability|ubiquitin-dependent protein catabolic process	nuclear chromatin	histone binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(80;0.0187)		AGGGAAGCACCACTGCCATTT	0.478													27	43					0	0	1	0	0
DAPK2	23604	broad.mit.edu	37	15	64200735	64200735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:64200735C>T	uc002amr.2	-	12	1128	c.1097G>A	c.(1096-1098)AGG>AAG	p.R366K	DAPK2_uc010uim.1_RNA	NM_014326	NP_055141	Q9UIK4	DAPK2_HUMAN	death-associated kinase 2	366					apoptosis|induction of apoptosis|intracellular protein kinase cascade	cytoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|identical protein binding			stomach(1)|central_nervous_system(1)	2				LUAD - Lung adenocarcinoma(2;0.215)		GGTGCTGCTCCTCCTCCGTGG	0.607													4	22					0	0	1	0	0
DAPK2	23604	broad.mit.edu	37	15	64275842	64275842	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:64275842C>T	uc002amr.2	-	3	235	c.204G>A	c.(202-204)CGG>CGA	p.R68R	DAPK2_uc010uim.1_RNA|DAPK2_uc010bgu.1_Silent_p.R58R	NM_014326	NP_055141	Q9UIK4	DAPK2_HUMAN	death-associated kinase 2	68	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	cytoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|identical protein binding			stomach(1)|central_nervous_system(1)	2				LUAD - Lung adenocarcinoma(2;0.215)		CGATCTCCTCCCGGCTCACAC	0.627													18	51					0	0	1	0	0
TRIP4	9325	broad.mit.edu	37	15	64701933	64701933	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:64701933C>T	uc002anm.2	+	7	992	c.949C>T	c.(949-951)CGA>TGA	p.R317*		NM_016213	NP_057297	Q15650	TRIP4_HUMAN	thyroid hormone receptor interactor 4	317					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	ligand-dependent nuclear receptor binding|transcription coactivator activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3						GAGAGAACTTCGACACGCCTC	0.453													8	75					0	0	1	0	0
ZNF609	23060	broad.mit.edu	37	15	64966150	64966150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:64966150G>A	uc002ann.2	+	4	1097	c.1097G>A	c.(1096-1098)CGC>CAC	p.R366H		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	366						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						CTGGAAATGCGCAATGGCCGG	0.483													5	89					0	0	1	0	0
PIF1	80119	broad.mit.edu	37	15	65114473	65114473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:65114473G>A	uc002ant.2	-	4	875	c.809C>T	c.(808-810)GCC>GTC	p.A270V	PIF1_uc002anr.2_5'Flank|PIF1_uc002ans.2_5'Flank|PIF1_uc010uiq.1_Missense_Mutation_p.A270V|PIF1_uc002anu.2_3'UTR	NM_025049	NP_079325	Q9H611	PIF1_HUMAN	DNA helicase homolog PIF1	270	Hydrolyzes ATP in the presence of both magnesium and single-stranded DNA; weak activity in the presence of RNA or double-stranded DNA; No unwinding activity.				negative regulation of telomerase activity|regulation of telomere maintenance|viral genome replication	nuclear chromosome, telomeric region	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity|magnesium ion binding|single-stranded DNA-dependent ATP-dependent DNA helicase activity|telomeric DNA binding				0						ACCTGCAAAGGCATGGAGGGT	0.607													6	76					0	0	1	0	0
CILP	8483	broad.mit.edu	37	15	65490098	65490098	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:65490098G>A	uc002aon.2	-	9	2707	c.2526C>T	c.(2524-2526)TTC>TTT	p.F842F		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	842					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						CATTTGGGTTGAATTTAGGAG	0.527													9	88					0	0	1	0	0
CILP	8483	broad.mit.edu	37	15	65490764	65490764	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:65490764C>T	uc002aon.2	-	9	2041	c.1860G>A	c.(1858-1860)GTG>GTA	p.V620V		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	620					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						CACTGGCCTTCACTTTTCCTA	0.542													9	128					0	0	1	0	0
CILP	8483	broad.mit.edu	37	15	65491243	65491243	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:65491243C>T	uc002aon.2	-	9	1562	c.1381G>A	c.(1381-1383)GAG>AAG	p.E461K		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	461					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						TCCCTTTCCTCTGTCTTGGAG	0.592													12	38					0	0	1	0	0
IGDCC3	9543	broad.mit.edu	37	15	65622733	65622733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:65622733G>A	uc002aos.2	-	11	2008	c.1756C>T	c.(1756-1758)CCC>TCC	p.P586S	IGDCC3_uc002aor.1_5'Flank	NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	586	Extracellular (Potential).|Fibronectin type-III 2.									ovary(3)	3						ACTGCAGTGGGGTCTGGAGGA	0.607													5	99					0	0	1	0	0
IGDCC3	9543	broad.mit.edu	37	15	65622907	65622907	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:65622907G>A	uc002aos.2	-	10	1986	c.1734C>T	c.(1732-1734)TCC>TCT	p.S578S	IGDCC3_uc002aor.1_5'Flank	NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	578	Extracellular (Potential).|Fibronectin type-III 2.									ovary(3)	3						TGAGGTTGTAGGAGGAGACGG	0.667													10	118					0	0	1	0	0
IGDCC3	9543	broad.mit.edu	37	15	65667616	65667616	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:65667616C>T	uc002aos.2	-	2	480	c.228G>A	c.(226-228)AGG>AGA	p.R76R		NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	76	Extracellular (Potential).|Ig-like C2-type 1.									ovary(3)	3						CCCCATTCTTCCTCCAGGTGA	0.602													5	36					0	0	1	0	0
RPL4	6124	broad.mit.edu	37	15	66793834	66793834	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:66793834G>A	uc002apv.2	-	6	611	c.555C>T	c.(553-555)GCC>GCT	p.A185A	RPL4_uc010bhr.2_Silent_p.A91A|RPL4_uc002apw.2_Silent_p.A91A|RPL4_uc002apx.2_Silent_p.A91A|RPL4_uc010ujq.1_Silent_p.A185A|SNORD18C_uc010bhs.1_5'Flank	NM_000968	NP_000959	P36578	RL4_HUMAN	ribosomal protein L4	185					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						TTCGCTGAGAGGCATAGACCT	0.378													27	47					0	0	1	0	0
NOX5	79400	broad.mit.edu	37	15	69320665	69320665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:69320665G>A	uc002ars.1	+	3	305	c.285G>A	c.(283-285)ATG>ATA	p.M95I	NOX5_uc002arp.1_Missense_Mutation_p.M77I|NOX5_uc002arq.1_Missense_Mutation_p.M77I|NOX5_uc010bid.1_Missense_Mutation_p.M88I|NOX5_uc002arr.1_Missense_Mutation_p.M95I|NOX5_uc010bie.1_5'UTR	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	95	Cytoplasmic (Potential).|EF-hand 3; atypical; contains an insert of 28 residues.|N-terminal regulatory region; interacts with the C-terminal catalytic region in a calcium-dependent manner.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						GCAGCCCCATGGACAAACTCA	0.557													10	123					0	0	1	0	0
GLCE	26035	broad.mit.edu	37	15	69561393	69561393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:69561393G>A	uc002ary.1	+	5	1892	c.1664G>A	c.(1663-1665)GGC>GAC	p.G555D		NM_015554	NP_056369	O94923	GLCE_HUMAN	D-glucuronyl C5-epimerase	555	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|heparin biosynthetic process	Golgi membrane|integral to membrane	UDP-glucuronate 5'-epimerase activity			ovary(2)	2						TATGACACTGGCTCAGGAACC	0.488													7	55					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	72021046	72021046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:72021046G>A	uc002atb.1	+	8	1595	c.1516G>A	c.(1516-1518)GAG>AAG	p.E506K	THSD4_uc002atd.1_Missense_Mutation_p.E180K|THSD4_uc010ukg.1_Missense_Mutation_p.E146K|THSD4_uc002ate.2_Missense_Mutation_p.E146K	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	506						proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						TCCCACCAACGAGATCTTGGA	0.458													10	153					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	72050249	72050249	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:72050249G>A	uc002atb.1	+	14	2503	c.2424G>A	c.(2422-2424)GCG>GCA	p.A808A	THSD4_uc002ate.2_Silent_p.A448A|THSD4_uc002atg.1_Silent_p.A11A	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	808	TSP type-1 4.					proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						AGTGCTCAGCGGAGTGTGGGG	0.607													14	54					0	0	1	0	0
NR2E3	10002	broad.mit.edu	37	15	72105937	72105937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:72105937G>A	uc002ati.2	+	7	1145	c.955G>A	c.(955-957)GAG>AAG	p.E319K	NR2E3_uc002ath.1_Missense_Mutation_p.E319K	NM_014249	NP_055064	Q9Y5X4	NR2E3_HUMAN	photoreceptor-specific nuclear receptor isoform	319					phototransduction|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0						GACCCCCACGGAGTTTGCCTG	0.607													6	40					0	0	1	0	0
MYO9A	4649	broad.mit.edu	37	15	72189926	72189926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:72189926G>A	uc002atl.3	-	25	5391	c.4918C>T	c.(4918-4920)CGC>TGC	p.R1640C	MYO9A_uc010biq.2_Missense_Mutation_p.R1260C|MYO9A_uc002atn.1_Missense_Mutation_p.R1621C|MYO9A_uc002atk.2_Missense_Mutation_p.R364C|MYO9A_uc002atm.1_Missense_Mutation_p.R364C	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1640	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						TTTGAAATGCGATTATTTGAG	0.428													9	21					0	0	1	0	0
PARP6	56965	broad.mit.edu	37	15	72553947	72553947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:72553947G>A	uc002auc.2	-	8	956	c.497C>T	c.(496-498)ACC>ATC	p.T166I	PARP6_uc002aua.2_Missense_Mutation_p.T31I|PARP6_uc002aub.2_RNA|PARP6_uc002aud.3_RNA|PARP6_uc002auf.1_Missense_Mutation_p.T166I	NM_020214	NP_064599	Q2NL67	PARP6_HUMAN	poly (ADP-ribose) polymerase family, member 6	166							NAD+ ADP-ribosyltransferase activity				0						CTTCTTGATGGTACCACTTGC	0.478													50	171					0	0	1	0	0
HEXA	3073	broad.mit.edu	37	15	72638964	72638964	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:72638964A>T	uc002aun.3	-	11	1441	c.1234T>A	c.(1234-1236)TTC>ATC	p.F412I	uc002aug.2_RNA|CELF6_uc002auk.3_Intron|HEXA_uc010ukn.1_Missense_Mutation_p.F423I|HEXA_uc002auo.3_Missense_Mutation_p.F275I|HEXA_uc010bix.2_Missense_Mutation_p.F412I|HEXA_uc010biy.2_Missense_Mutation_p.F275I|HEXA_uc010uko.1_Missense_Mutation_p.F238I|HEXA_uc010biz.1_RNA	NM_000520	NP_000511	P06865	HEXA_HUMAN	hexosaminidase A preproprotein	412					cell death	lysosome	beta-N-acetylhexosaminidase activity|cation binding|protein heterodimerization activity			ovary(3)|upper_aerodigestive_tract(1)	4						AGGGCCCGGAAGCCGGCCTTG	0.507													14	275					0	0	1	0	0
NEO1	4756	broad.mit.edu	37	15	73415021	73415021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:73415021C>T	uc002avm.3	+	3	746	c.604C>T	c.(604-606)CCA>TCA	p.P202S	NEO1_uc010ukx.1_Missense_Mutation_p.P202S|NEO1_uc010uky.1_Missense_Mutation_p.P202S|NEO1_uc010ukz.1_5'UTR	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	202	Extracellular (Potential).|Ig-like C2-type 2.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						TATCAAACTTCCAAGTGGAAT	0.448													4	25					0	0	1	0	0
HCN4	10021	broad.mit.edu	37	15	73616252	73616252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:73616252C>T	uc002avp.2	-	8	3176	c.2182G>A	c.(2182-2184)GAC>AAC	p.D728N		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	728	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		GAGTTGAGGTCGTGCTGGACT	0.592													5	82					0	0	1	0	0
C15orf59	388135	broad.mit.edu	37	15	74032374	74032374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:74032374G>A	uc002avy.2	-	2	1111	c.766C>T	c.(766-768)CCT>TCT	p.P256S		NM_001039614	NP_001034703	Q2T9L4	CO059_HUMAN	hypothetical protein LOC388135	256										pancreas(1)	1						GTCTGTTCAGGGGCCAAGGTA	0.617													9	159					0	0	1	0	0
GOLGA6A	342096	broad.mit.edu	37	15	74363359	74363359	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:74363359C>T	uc002axa.1	-	18	2015	c.1974G>A	c.(1972-1974)CTG>CTA	p.L658L	uc010ulg.1_5'Flank	NM_001038640	NP_001033729	Q9NYA3	GOG6A_HUMAN	golgi autoantigen, golgin subfamily a, 6	658											0						CGTTGTTGTCCAGGCTCACTT	0.622													5	98					0	0	1	0	0
ISLR2	57611	broad.mit.edu	37	15	74426457	74426457	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:74426457G>A	uc002axd.2	+	4	2131	c.1362G>A	c.(1360-1362)GCG>GCA	p.A454A	ISLR2_uc002axe.2_Silent_p.A454A|ISLR2_uc010bjg.2_Silent_p.A454A|ISLR2_uc010bjf.2_Silent_p.A454A	NM_001130136	NP_001123608	Q6UXK2	ISLR2_HUMAN	immunoglobulin superfamily containing	454	Extracellular (Potential).				positive regulation of axon extension	cell surface|integral to membrane|plasma membrane					0						CGGACCCGGCGGAGGAGCAGC	0.657													8	19					0	0	1	0	0
ISLR	3671	broad.mit.edu	37	15	74468145	74468145	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:74468145G>A	uc002axg.1	+	2	1228	c.946G>A	c.(946-948)GAC>AAC	p.D316N	ISLR_uc002axh.1_Missense_Mutation_p.D316N	NM_005545	NP_005536	O14498	ISLR_HUMAN	immunoglobulin superfamily containing	316	Ig-like.				cell adhesion	extracellular region				large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						GCTTATCCCCGACTTTGGCAA	0.662													6	62					0	0	1	0	0
CCDC33	80125	broad.mit.edu	37	15	74560742	74560742	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:74560742C>T	uc002axo.2	+	5	883	c.489C>T	c.(487-489)GTC>GTT	p.V163V	CCDC33_uc002axp.2_5'UTR	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	366							protein binding			ovary(3)|skin(2)	5						ACGCAACAGTCGTTCGGAAGA	0.607													5	39					0	0	1	0	0
CCDC33	80125	broad.mit.edu	37	15	74623378	74623378	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:74623378C>A	uc002axo.2	+	14	1996	c.1602C>A	c.(1600-1602)GCC>GCA	p.A534A	CCDC33_uc002axp.2_Silent_p.A356A|CCDC33_uc002axq.2_Silent_p.A127A|CCDC33_uc002axr.2_Silent_p.A127A	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	737	Potential.						protein binding			ovary(3)|skin(2)	5						AGCCACAGGCCGCTCTGCTGA	0.612													4	24					0.150653	0.151501	1	1	0
CYP11A1	1583	broad.mit.edu	37	15	74630352	74630352	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:74630352G>A	uc002axt.2	-	9	1682	c.1527C>T	c.(1525-1527)TTC>TTT	p.F509F	CYP11A1_uc002axs.2_Silent_p.F351F|CYP11A1_uc010bjm.1_Silent_p.F351F|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Silent_p.F427F	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	509					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	GCCAGAAGGTGAAGGAGATGG	0.547													22	62					0	0	1	0	0
CYP11A1	1583	broad.mit.edu	37	15	74659835	74659835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:74659835C>T	uc002axt.2	-	1	247	c.92G>A	c.(91-93)AGG>AAG	p.R31K	CYP11A1_uc002axs.2_5'Flank|CYP11A1_uc010bjm.1_5'Flank|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Missense_Mutation_p.R31K|CYP11A1_uc010ulj.1_5'UTR|CYP11A1_uc010bjq.2_Missense_Mutation_p.R31K	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	31					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	AGTGGGCACCCTGAGACGCCC	0.637													7	65					0	0	1	0	0
CYP1A1	1543	broad.mit.edu	37	15	75013627	75013627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:75013627G>A	uc002ayp.3	-	5	1201	c.1079C>T	c.(1078-1080)TCT>TTT	p.S360F	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Missense_Mutation_p.S96F|CYP1A1_uc010bjx.2_Missense_Mutation_p.S96F|CYP1A1_uc002ayq.3_Missense_Mutation_p.S360F|CYP1A1_uc010bjy.2_Missense_Mutation_p.S360F|CYP1A1_uc010bjz.1_Missense_Mutation_p.S96F	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	360					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	GGATCTGTCAGAGAGCCGGGG	0.607									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				5	78					0	0	1	0	0
CYP1A1	1543	broad.mit.edu	37	15	75014049	75014049	+	Missense_Mutation	SNP	G	A	A	rs34260157	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:75014049G>A	uc002ayp.3	-	3	957	c.835C>T	c.(835-837)CGG>TGG	p.R279W	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Missense_Mutation_p.R15W|CYP1A1_uc010bjx.2_Missense_Mutation_p.R15W|CYP1A1_uc002ayq.3_Missense_Mutation_p.R279W|CYP1A1_uc010bjy.2_Missense_Mutation_p.R279W|CYP1A1_uc010bjz.1_Missense_Mutation_p.R15W	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	279					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	GTGATGTCCCGGATGTGGCCC	0.502									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				26	62					0	0	1	0	0
LMAN1L	79748	broad.mit.edu	37	15	75108815	75108816	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:75108815_75108816GG>AA	uc002ayt.1	+	3	380_381	c.378_379GG>AA	c.(376-381)GGGGGG>GGAAGG	p.G127R	LMAN1L_uc010bkd.2_Missense_Mutation_p.G55R|LMAN1L_uc010ulo.1_Intron|LMAN1L_uc010bke.1_Missense_Mutation_p.G127R	NM_021819	NP_068591	Q9HAT1	LMA1L_HUMAN	lectin, mannose-binding, 1 like precursor	127	Lumenal (Potential).|L-type lectin-like.					ER-Golgi intermediate compartment membrane|integral to membrane	sugar binding				0						CTGTCCTTGGGGGGCTGGCTTC	0.559													10	114					0	0	1	0	0
C15orf39	56905	broad.mit.edu	37	15	75499395	75499395	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:75499395C>T	uc002azp.3	+	2	1326	c.1006C>T	c.(1006-1008)CCC>TCC	p.P336S	C15orf39_uc002azq.3_Missense_Mutation_p.P336S|C15orf39_uc002azr.3_5'Flank	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	336											0						ACCTTACATTCCCCCACTGGG	0.687													5	43					0	0	1	0	0
MAN2C1	4123	broad.mit.edu	37	15	75651681	75651681	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:75651681G>A	uc002baf.2	-	17	2051	c.2034C>T	c.(2032-2034)TTC>TTT	p.F678F	MAN2C1_uc002bag.2_Silent_p.F678F|MAN2C1_uc002bah.2_Missense_Mutation_p.R683C|MAN2C1_uc010bkk.2_Silent_p.F579F	NM_006715	NP_006706	Q9NTJ4	MA2C1_HUMAN	mannosidase, alpha, class 2C, member 1	678					mannose metabolic process		alpha-mannosidase activity|carbohydrate binding|protein binding|zinc ion binding				0						CTTGCACTACGAACACAGGCT	0.622													6	55					0	0	1	0	0
SIN3A	25942	broad.mit.edu	37	15	75692474	75692474	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:75692474G>A	uc002bai.2	-	12	2020	c.1761C>T	c.(1759-1761)TCC>TCT	p.S587S	SIN3A_uc002baj.2_Silent_p.S587S|SIN3A_uc010uml.1_Silent_p.S587S	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	587	Interactions with SUDS3 and SAP130.|Interaction with NCOR1 (By similarity).				blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						ACGAAGGGAAGGAAACCCAGG	0.388													3	42					0	0	1	0	0
CSPG4	1464	broad.mit.edu	37	15	75980755	75980755	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:75980755G>A	uc002baw.2	-	3	2744	c.2651C>T	c.(2650-2652)TCC>TTC	p.S884F		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	884	Interaction with COL5A1 (By similarity).|Extracellular (Potential).|Gly/Ser-rich (glycosaminoglycan attachment domain).|Interaction with COL6A2 (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						ATAGAGTGGGGAGAAATATGG	0.597													5	37					0	0	1	0	0
ISL2	64843	broad.mit.edu	37	15	76634064	76634064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:76634064C>T	uc002bbw.1	+	6	1046	c.968C>T	c.(967-969)TCC>TTC	p.S323F		NM_145805	NP_665804	Q96A47	ISL2_HUMAN	ISL LIM homeobox 2	323						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CCCCAGGTCTCCTTCTCCGAG	0.677													6	95					0	0	1	0	0
ACSBG1	23205	broad.mit.edu	37	15	78472121	78472121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:78472121C>T	uc002bdh.2	-	10	1311	c.1255G>A	c.(1255-1257)GAC>AAC	p.D419N	ACSBG1_uc010umw.1_Missense_Mutation_p.D415N|ACSBG1_uc010umx.1_Missense_Mutation_p.D177N	NM_015162	NP_055977	Q96GR2	ACBG1_HUMAN	lipidosin	419					long-chain fatty acid metabolic process|myelination|very long-chain fatty acid metabolic process	cytoplasmic membrane-bounded vesicle|endoplasmic reticulum|microsome	ATP binding|long-chain fatty acid-CoA ligase activity|very long-chain fatty acid-CoA ligase activity			ovary(1)	1						GGCTTCAGGTCGCTGGTGGGA	0.408													5	24					0	0	1	0	0
AGPHD1	123688	broad.mit.edu	37	15	78805750	78805750	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:78805750C>T	uc010unc.1	+	2	433	c.320C>T	c.(319-321)GCT>GTT	p.A107V	AGPHD1_uc002bdt.2_Missense_Mutation_p.A107V|AGPHD1_uc010ble.2_Missense_Mutation_p.A107V	NM_001013619	NP_001013641	A2RU49	AGPD1_HUMAN	aminoglycoside phosphotransferase domain	107						cytoplasm	kinase activity				0						GACAACACAGCTTCTCTCGTG	0.453													8	47					0	0	1	0	0
RASGRF1	5923	broad.mit.edu	37	15	79324609	79324609	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:79324609G>A	uc002beq.2	-	7	1383	c.1008C>T	c.(1006-1008)TTC>TTT	p.F336F	RASGRF1_uc002bep.2_Silent_p.F336F|RASGRF1_uc010blm.1_Silent_p.F258F|RASGRF1_uc002ber.3_Silent_p.F336F	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	336	DH.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						GGTTGCGGACGAACTCTTGGT	0.587													5	47					0	0	1	0	0
TMED3	23423	broad.mit.edu	37	15	79614347	79614347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:79614347G>A	uc002beu.2	+	3	546	c.445G>A	c.(445-447)GAG>AAG	p.E149K	TMED3_uc010unj.1_Intron|TMED3_uc002bev.2_RNA	NM_007364	NP_031390	Q9Y3Q3	TMED3_HUMAN	transmembrane emp24 domain containing 3	149	Lumenal (Potential).				protein transport	ER-Golgi intermediate compartment membrane|Golgi apparatus|integral to membrane				ovary(1)|skin(1)	2						GACCATCCATGAGGCTCTGAA	0.552													9	52					0	0	1	0	0
FAH	2184	broad.mit.edu	37	15	80467379	80467379	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:80467379C>T	uc002bfj.2	+	11	941	c.859C>T	c.(859-861)CTG>TTG	p.L287L	FAH_uc002bfk.1_Silent_p.L287L|FAH_uc002bfm.1_Silent_p.L287L|FAH_uc002bfn.1_Silent_p.L217L|FAH_uc010bln.1_5'Flank|FAH_uc010blo.1_5'Flank	NM_000137	NP_000128	P16930	FAAA_HUMAN	fumarylacetoacetase	287					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	fumarylacetoacetase activity|metal ion binding				0						CCTGCCGTATCTGTGCCATGA	0.592									Tyrosinemia_type_1				8	114					0	0	1	0	0
ARNT2	9915	broad.mit.edu	37	15	80845037	80845037	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:80845037C>T	uc002bfr.2	+	10	1177	c.1011C>T	c.(1009-1011)TTC>TTT	p.F337F	ARNT2_uc010unm.1_Silent_p.F326F|ARNT2_uc002bfs.2_Silent_p.F326F	NM_014862	NP_055677	Q9HBZ2	ARNT2_HUMAN	aryl hydrocarbon receptor nuclear translocator	337	PAS 2.				central nervous system development|in utero embryonic development|response to hypoxia		aryl hydrocarbon receptor binding|DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(3)|ovary(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.134)			CCACAGAGTTCTTATCCCGGC	0.493													7	46					0	0	1	0	0
KIAA1199	57214	broad.mit.edu	37	15	81235344	81235344	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:81235344G>A	uc002bfw.1	+	27	4018	c.3758G>A	c.(3757-3759)GGG>GAG	p.G1253E	KIAA1199_uc010unn.1_Missense_Mutation_p.G1253E	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	1253										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						GTGATTGACGGGAACCAAGGG	0.567													16	213					0	0	1	0	0
TMC3	342125	broad.mit.edu	37	15	81665026	81665026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:81665026C>T	uc002bgo.1	-	2	142	c.142G>A	c.(142-144)GAA>AAA	p.E48K	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Missense_Mutation_p.E48K	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	48	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						AAGATTTGTTCCGGATCATTG	0.448													4	29					0	0	1	0	0
FSD2	123722	broad.mit.edu	37	15	83451680	83451680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:83451680C>T	uc002bjd.2	-	4	1000	c.833G>A	c.(832-834)GGG>GAG	p.G278E	FSD2_uc010uol.1_Missense_Mutation_p.G278E|FSD2_uc010uom.1_Missense_Mutation_p.G278E	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	278	Potential.									central_nervous_system(1)	1						CTTTTTCTCCCCTAGAGCTTG	0.383													19	169					0	0	1	0	0
FSD2	123722	broad.mit.edu	37	15	83456169	83456169	+	Translation_Start_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:83456169C>T	uc002bjd.2	-	2	141	c.-26G>A	c.(-28--24)AGGTG>AGATG		FSD2_uc010uol.1_Translation_Start_Site|FSD2_uc010uom.1_Translation_Start_Site	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing											central_nervous_system(1)	1						CTCAGAAGCACCTTTATATAA	0.468													6	58					0	0	1	0	0
SH3GL3	6457	broad.mit.edu	37	15	84287021	84287021	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:84287021C>T	uc002bjw.2	+	9	1221	c.1026C>T	c.(1024-1026)ATC>ATT	p.I342I	SH3GL3_uc002bjx.2_Silent_p.I273I|SH3GL3_uc002bju.2_Silent_p.I350I|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	342	SH3.				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						TGGAAGTGATCGTGCCTTTAC	0.408													4	44					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84651029	84651029	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:84651029C>T	uc002bjz.3	+	21	2873	c.2649C>T	c.(2647-2649)ATC>ATT	p.I883I	ADAMTSL3_uc010bmt.1_Silent_p.I883I|ADAMTSL3_uc010bmu.1_Silent_p.I883I	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	883						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TTGGAGAAATCAAATCAGAGA	0.373													8	25					0	0	1	0	0
ZSCAN2	54993	broad.mit.edu	37	15	85164531	85164531	+	Missense_Mutation	SNP	G	A	A	rs144452460		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:85164531G>A	uc002bkr.2	+	3	1331	c.1105G>A	c.(1105-1107)GAA>AAA	p.E369K	ZSCAN2_uc010bmz.1_Missense_Mutation_p.E367K|ZSCAN2_uc010bna.2_Missense_Mutation_p.E219K|ZSCAN2_uc010uox.1_Intron|ZSCAN2_uc010uoy.1_Intron|ZSCAN2_uc010uoz.1_Intron	NM_181877	NP_870992	Q7Z7L9	ZSCA2_HUMAN	zinc finger protein 29 isoform 1	369	C2H2-type 6.				cell differentiation|multicellular organismal development|spermatogenesis|viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (272;0.168)|all cancers(203;5.43e-22)		AGAATGCGGCGAAAGCTTTAG	0.502													8	102					0	0	1	0	0
ZNF592	9640	broad.mit.edu	37	15	85326413	85326413	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:85326413C>T	uc002bld.2	+	4	843	c.507C>T	c.(505-507)TTC>TTT	p.F169F	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	169					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			ACAGTTATTTCCCACCCCCTC	0.512													12	146					0	0	1	0	0
AKAP13	11214	broad.mit.edu	37	15	86118489	86118489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:86118489G>A	uc002blv.1	+	6	960	c.790G>A	c.(790-792)GAA>AAA	p.E264K	AKAP13_uc002blt.1_Missense_Mutation_p.E264K|AKAP13_uc002blu.1_Missense_Mutation_p.E264K	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	264					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						TTCACATCATGAACACCCATT	0.383													11	77					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88423558	88423558	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:88423558G>A	uc002bme.1	-	18	2439	c.2277C>T	c.(2275-2277)ATC>ATT	p.I759I	NTRK3_uc002bmh.2_Silent_p.I737I|NTRK3_uc002bmf.1_Silent_p.I745I	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	759	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			TCTCCCAGAGGATCACCCCGA	0.527			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			7	60					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88679739	88679739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:88679739C>T	uc002bme.1	-	7	886	c.724G>A	c.(724-726)GAC>AAC	p.D242N	NTRK3_uc002bmh.2_Missense_Mutation_p.D242N|NTRK3_uc002bmf.1_Missense_Mutation_p.D242N|NTRK3_uc010upl.1_Missense_Mutation_p.D144N|NTRK3_uc010bnh.1_Missense_Mutation_p.D242N|NTRK3_uc002bmg.2_Missense_Mutation_p.D242N	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	242	Ig-like C2-type 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			ACTATCCAGTCCACATCAGGA	0.552			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			4	21					0	0	1	0	0
MRPL46	26589	broad.mit.edu	37	15	89002984	89002984	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:89002984A>T	uc002bmj.2	-	4	725	c.700T>A	c.(700-702)TTC>ATC	p.F234I	MRPL46_uc002bmi.1_3'UTR|MRPL46_uc002bmk.2_Missense_Mutation_p.F233I	NM_022163	NP_071446	Q9H2W6	RM46_HUMAN	mitochondrial ribosomal protein L46 precursor	234						mitochondrion|ribosome	hydrolase activity			central_nervous_system(1)	1	Lung NSC(78;0.203)		BRCA - Breast invasive adenocarcinoma(143;0.188)			AGTGCTTTGAAGAAGAACACC	0.498													5	44					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89391210	89391210	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:89391210A>T	uc010upo.1	+	9	2047	c.1673A>T	c.(1672-1674)TAT>TTT	p.Y558F	ACAN_uc002bmx.2_Missense_Mutation_p.Y558F|ACAN_uc010upp.1_Missense_Mutation_p.Y558F|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	558					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GTCAGGACCTATGGCGTGCGC	0.567													14	104					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89398588	89398588	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:89398588G>A	uc010upo.1	+	12	3146	c.2772G>A	c.(2770-2772)GAG>GAA	p.E924E	ACAN_uc010upp.1_Silent_p.E924E|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	924					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GGGATGAAGAGAGAATTGAGT	0.577													5	30					0	0	1	0	0
RLBP1	6017	broad.mit.edu	37	15	89760502	89760502	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:89760502C>T	uc002bnl.2	-	5	575	c.195G>A	c.(193-195)GAG>GAA	p.E65E		NM_000326	NP_000317	P12271	RLBP1_HUMAN	retinaldehyde binding protein 1	65					response to stimulus|visual perception|vitamin A metabolic process	cytoplasm|soluble fraction	retinol binding|transporter activity			central_nervous_system(1)	1	Lung NSC(78;0.0472)|all_lung(78;0.089)				Vitamin A(DB00162)	TCTCCTGCAGCTCTCGCACTG	0.637													9	83					0	0	1	0	0
KIF7	374654	broad.mit.edu	37	15	90171980	90171980	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:90171980C>T	uc002bof.2	-	19	3779	c.3702G>A	c.(3700-3702)CAG>CAA	p.Q1234Q	KIF7_uc010upw.1_Silent_p.Q720Q|C15orf42_uc010upv.1_Intron	NM_198525	NP_940927	Q2M1P5	KIF7_HUMAN	kinesin family member 7	1234					microtubule-based movement|negative regulation of smoothened signaling pathway|positive regulation of smoothened signaling pathway	cilium	ATP binding|microtubule motor activity|protein binding			ovary(2)|lung(1)	3	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			TTCCAGGAGCCTGTCTGCCCT	0.632													5	36					0	0	1	0	0
WDR93	56964	broad.mit.edu	37	15	90246318	90246318	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:90246318C>T	uc002boj.2	+	3	542	c.441C>T	c.(439-441)TCC>TCT	p.S147S	WDR93_uc002bok.3_Silent_p.S147S|WDR93_uc010bnr.2_Silent_p.S147S	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	147					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			ATGTCACTTCCATCTGGGCCA	0.393													6	82					0	0	1	0	0
ANPEP	290	broad.mit.edu	37	15	90340826	90340826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:90340826C>T	uc002bop.3	-	15	2429	c.2137G>A	c.(2137-2139)GAG>AAG	p.E713K		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	713	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	CCATAGACCTCGGAGCGGTCA	0.527													11	118					0	0	1	0	0
ANPEP	290	broad.mit.edu	37	15	90349472	90349472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:90349472C>T	uc002bop.3	-	2	635	c.343G>A	c.(343-345)GAG>AAG	p.E115K		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	115	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	TCAGTGGCCTCCTTGCAGGTG	0.612													6	49					0	0	1	0	0
ANPEP	290	broad.mit.edu	37	15	90349785	90349785	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:90349785G>A	uc002bop.3	-	2	322	c.30C>T	c.(28-30)TCC>TCT	p.S10S		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	10	Helical; Signal-anchor for type II membrane protein; (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	GGATGCCCAGGGACTTGGAAA	0.612													16	27					0	0	1	0	0
AP3S2	10239	broad.mit.edu	37	15	90446517	90446517	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:90446517G>A	uc002bos.3	-	5	758	c.603C>T	c.(601-603)GCC>GCT	p.A201A	C15orf38_uc002bot.1_RNA|C15orf38_uc002bou.2_Silent_p.A201A	NM_182616	NP_872422	P59780	AP3S2_HUMAN	hypothetical protein LOC348110	Error:Variant_position_missing_in_P59780_after_alignment					intracellular protein transport|vesicle-mediated transport	cytoplasmic vesicle membrane|Golgi apparatus|membrane coat	protein transporter activity				0	Lung NSC(78;0.0181)|all_lung(78;0.0384)		BRCA - Breast invasive adenocarcinoma(143;0.0107)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.223)			AACACTTTTGGGCCATGATGT	0.532													25	100					0	0	1	0	0
AP3S2	10239	broad.mit.edu	37	15	90451591	90451591	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:90451591G>A	uc002bos.3	-	3	377	c.222C>T	c.(220-222)TTC>TTT	p.F74F	C15orf38_uc002bot.1_RNA|C15orf38_uc002bou.2_Silent_p.F74F	NM_182616	NP_872422	P59780	AP3S2_HUMAN	hypothetical protein LOC348110	Error:Variant_position_missing_in_P59780_after_alignment					intracellular protein transport|vesicle-mediated transport	cytoplasmic vesicle membrane|Golgi apparatus|membrane coat	protein transporter activity				0	Lung NSC(78;0.0181)|all_lung(78;0.0384)		BRCA - Breast invasive adenocarcinoma(143;0.0107)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.223)			CCTTGGCGTCGAATTTACGGC	0.582													12	52					0	0	1	0	0
TTLL13	440307	broad.mit.edu	37	15	90794019	90794019	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:90794019C>T	uc002bpd.1	+	2	445	c.157C>T	c.(157-159)CCC>TCC	p.P53S	TTLL13_uc002bpe.1_RNA	NM_001029964	NP_001025135	A6NNM8	TTL13_HUMAN	tubulin tyrosine ligase-like family, member 13	53					protein modification process		ATP binding|tubulin-tyrosine ligase activity				0	Melanoma(11;0.00551)|Lung NSC(78;0.0178)|all_lung(78;0.0378)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|BRCA - Breast invasive adenocarcinoma(143;0.0323)|Kidney(142;0.0514)			AAATGGGGTTCCCTCACCCAT	0.473													7	105					0	0	1	0	0
TTLL13	440307	broad.mit.edu	37	15	90794104	90794104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:90794104G>A	uc002bpd.1	+	2	530	c.242G>A	c.(241-243)AGA>AAA	p.R81K	TTLL13_uc002bpe.1_RNA	NM_001029964	NP_001025135	A6NNM8	TTL13_HUMAN	tubulin tyrosine ligase-like family, member 13	81					protein modification process		ATP binding|tubulin-tyrosine ligase activity				0	Melanoma(11;0.00551)|Lung NSC(78;0.0178)|all_lung(78;0.0378)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|BRCA - Breast invasive adenocarcinoma(143;0.0323)|Kidney(142;0.0514)			AGGAGGAAGAGAAGGCGGAAA	0.522													28	95					0	0	1	0	0
IQGAP1	8826	broad.mit.edu	37	15	91034751	91034751	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:91034751C>T	uc002bpl.1	+	34	4536	c.4435C>T	c.(4435-4437)CAG>TAG	p.Q1479*	IQGAP1_uc010uqg.1_Nonsense_Mutation_p.Q100*	NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	1479	C2.				energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			GAACAAATACCAGGAACTGAT	0.502													5	43					0	0	1	0	0
CRTC3	64784	broad.mit.edu	37	15	91147627	91147627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:91147627C>T	uc002bpp.2	+	5	530	c.424C>T	c.(424-426)CCT>TCT	p.P142S	CRTC3_uc002bpo.2_Missense_Mutation_p.P142S	NM_022769	NP_073606	Q6UUV7	CRTC3_HUMAN	transducer of regulated CREB protein 3 isoform	142					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus			CRTC3/MAML2(26)	salivary_gland(26)|ovary(1)	27	Melanoma(11;0.00551)|Lung NSC(78;0.0931)|all_lung(78;0.163)		BRCA - Breast invasive adenocarcinoma(143;0.0745)			GCAGCAGCCTCCTTGGAAAGA	0.438			T	MAML2	salivary gland mucoepidermoid								5	66					0	0	1	0	0
FURIN	5045	broad.mit.edu	37	15	91424577	91424577	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:91424577C>T	uc002bpu.1	+	16	2070	c.1854C>T	c.(1852-1854)TTC>TTT	p.F618F		NM_002569	NP_002560	P09958	FURIN_HUMAN	furin preproprotein	618	Cys-rich.				cell proliferation|negative regulation of low-density lipoprotein particle receptor catabolic process|negative regulation of transforming growth factor-beta1 production|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|Notch signaling pathway|peptide biosynthetic process|peptidyl-glutamic acid carboxylation|post-translational protein modification|secretion by cell|signal peptide processing|transforming growth factor beta receptor signaling pathway|viral assembly, maturation, egress, and release	cell surface|Golgi lumen|Golgi membrane|integral to membrane|membrane raft|plasma membrane|trans-Golgi network|trans-Golgi network transport vesicle	metal ion binding|nerve growth factor binding|peptide binding|protease binding|serine-type endopeptidase activity|serine-type endopeptidase inhibitor activity			central_nervous_system(4)|lung(2)|breast(1)	7	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			CTCCAGGGTTCGCCCCCCAAG	0.632													133	286					0	0	1	0	0
FURIN	5045	broad.mit.edu	37	15	91424898	91424898	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:91424898C>T	uc002bpu.1	+	16	2391	c.2175C>T	c.(2173-2175)ATC>ATT	p.I725I	FES_uc010uqj.1_5'Flank|FES_uc010uqk.1_5'Flank|FES_uc002bpw.2_5'Flank|FES_uc002bpv.2_5'Flank	NM_002569	NP_002560	P09958	FURIN_HUMAN	furin preproprotein	725	Helical; (Potential).				cell proliferation|negative regulation of low-density lipoprotein particle receptor catabolic process|negative regulation of transforming growth factor-beta1 production|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|Notch signaling pathway|peptide biosynthetic process|peptidyl-glutamic acid carboxylation|post-translational protein modification|secretion by cell|signal peptide processing|transforming growth factor beta receptor signaling pathway|viral assembly, maturation, egress, and release	cell surface|Golgi lumen|Golgi membrane|integral to membrane|membrane raft|plasma membrane|trans-Golgi network|trans-Golgi network transport vesicle	metal ion binding|nerve growth factor binding|peptide binding|protease binding|serine-type endopeptidase activity|serine-type endopeptidase inhibitor activity			central_nervous_system(4)|lung(2)|breast(1)	7	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			GCGCCTTCATCGTGCTGGTCT	0.662													165	415					0	0	1	0	0
MAN2A2	4122	broad.mit.edu	37	15	91448685	91448685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:91448685C>T	uc010bnz.2	+	3	452	c.337C>T	c.(337-339)CCG>TCG	p.P113S	MAN2A2_uc010boa.2_Missense_Mutation_p.P155S|MAN2A2_uc002bqc.2_Missense_Mutation_p.P113S|MAN2A2_uc010uql.1_5'Flank|MAN2A2_uc010uqm.1_5'Flank	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	113	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			CTCCATCTCCCCGCAGGACTG	0.657													16	205					0	0	1	0	0
UNC45A	55898	broad.mit.edu	37	15	91492652	91492652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:91492652C>T	uc002bqg.2	+	14	2325	c.1985C>T	c.(1984-1986)TCC>TTC	p.S662F	UNC45A_uc002bqd.2_Missense_Mutation_p.S647F|UNC45A_uc010uqr.1_Missense_Mutation_p.S54F|UNC45A_uc002bqi.2_5'UTR	NM_018671	NP_061141	Q9H3U1	UN45A_HUMAN	smooth muscle cell associated protein-1 isoform	662					cell differentiation|muscle organ development	nucleus|perinuclear region of cytoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			CTGACCAGTTCCTGCAGAGAG	0.627													14	231					0	0	1	0	0
SV2B	9899	broad.mit.edu	37	15	91809816	91809816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:91809816C>T	uc002bqv.2	+	6	1404	c.1013C>T	c.(1012-1014)TCC>TTC	p.S338F	SV2B_uc002bqt.2_Missense_Mutation_p.S338F|SV2B_uc010uqv.1_Missense_Mutation_p.S187F|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	338	Cytoplasmic (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			TTTCAGGTTTCCAACATCAAA	0.368													45	150					0	0	1	0	0
SV2B	9899	broad.mit.edu	37	15	91811794	91811794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:91811794G>A	uc002bqv.2	+	8	1723	c.1332G>A	c.(1330-1332)ATG>ATA	p.M444I	SV2B_uc002bqt.2_Missense_Mutation_p.M444I|SV2B_uc010uqv.1_Missense_Mutation_p.M293I|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	444	Extracellular (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			ACTTCACGATGGAAAATCAGA	0.428													82	250					0	0	1	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92638124	92638124	+	Silent	SNP	G	A	A	rs12594058	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:92638124G>A	uc002bqx.2	+	3	861	c.660G>A	c.(658-660)ACG>ACA	p.T220T	SLCO3A1_uc002bqy.2_Silent_p.T220T|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Silent_p.T162T	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	220	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			TCCTGTTCACGATGCTGGTAT	0.398													8	115					0	0	1	0	0
C15orf32	145858	broad.mit.edu	37	15	93015479	93015479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:93015479C>T	uc002brc.1	+	1	573	c.101C>T	c.(100-102)ACT>ATT	p.T34I	C15orf32_uc010bod.1_RNA	NM_153040	NP_694585	Q32M92	CO032_HUMAN	hypothetical protein LOC145858	34										ovary(1)	1	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0493)|OV - Ovarian serous cystadenocarcinoma(32;0.125)			AACACCAAGACTTCCCCAAGA	0.527													6	87					0	0	1	0	0
CHD2	1106	broad.mit.edu	37	15	93510728	93510728	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:93510728A>G	uc002bsp.2	+	17	2749	c.2174A>G	c.(2173-2175)CAG>CGG	p.Q725R	CHD2_uc002bso.1_Missense_Mutation_p.Q725R	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	725					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			TCAGCCCTTCAGAAACAGTAT	0.413													3	59					0	0	1	0	0
IGF1R	3480	broad.mit.edu	37	15	99251220	99251220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:99251220C>T	uc002bul.2	+	2	574	c.524C>T	c.(523-525)CCA>CTA	p.P175L	IGF1R_uc010urq.1_Missense_Mutation_p.P175L|IGF1R_uc010bon.2_Missense_Mutation_p.P175L	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	175					anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	AATAAGCCCCCAAAGGAATGT	0.517													10	106					0	0	1	0	0
IGF1R	3480	broad.mit.edu	37	15	99467231	99467231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:99467231C>T	uc002bul.2	+	12	2662	c.2612C>T	c.(2611-2613)TCA>TTA	p.S871L	IGF1R_uc010bon.2_Missense_Mutation_p.S871L|IGF1R_uc010boo.1_5'Flank	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	871	Extracellular (Potential).|Fibronectin type-III 3.				anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	AAATACGGATCACAAGTTGAG	0.483													6	92					0	0	1	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100594173	100594173	+	Missense_Mutation	SNP	G	A	A	rs149692828		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:100594173G>A	uc002bvv.1	-	16	2303	c.2224C>T	c.(2224-2226)CGC>TGC	p.R742C		NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	742	Spacer.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		CTCACATAGCGAACAGTTGTG	0.517													12	174					0	0	1	0	0
LINS1	55180	broad.mit.edu	37	15	101109521	101109521	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:101109521G>A	uc002bwe.2	-	8	2487	c.2196C>T	c.(2194-2196)TTC>TTT	p.F732F	LINS1_uc002bwd.2_Silent_p.F319F|LINS1_uc002bwf.2_Silent_p.F732F|LINS1_uc002bwg.2_Silent_p.F732F|LINS1_uc002bwh.2_Silent_p.F732F	NM_001040614	NP_001035704	Q8NG48	LINES_HUMAN	lines homolog 1	732											0	Lung NSC(78;0.0018)|all_lung(78;0.00223)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.00095)|LUSC - Lung squamous cell carcinoma(107;0.0766)|Lung(145;0.103)			GATTATATGGGAAAAGATTTT	0.318													5	52					0	0	1	0	0
LINS1	55180	broad.mit.edu	37	15	101114268	101114268	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:101114268G>A	uc002bwe.2	-	6	1101	c.810C>T	c.(808-810)TTC>TTT	p.F270F	LINS1_uc002bwd.2_5'Flank|LINS1_uc002bwf.2_Silent_p.F270F|LINS1_uc002bwg.2_Silent_p.F270F|LINS1_uc002bwh.2_Silent_p.F270F|LINS1_uc010usa.1_Silent_p.F151F|LINS1_uc002bwi.2_Silent_p.F270F	NM_001040614	NP_001035704	Q8NG48	LINES_HUMAN	lines homolog 1	270											0	Lung NSC(78;0.0018)|all_lung(78;0.00223)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.00095)|LUSC - Lung squamous cell carcinoma(107;0.0766)|Lung(145;0.103)			TCTGGCAAGTGAAATGTAACT	0.393													6	24					0	0	1	0	0
LRRK1	79705	broad.mit.edu	37	15	101549206	101549206	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:101549206C>T	uc002bwr.2	+	7	1246	c.927C>T	c.(925-927)CTC>CTT	p.L309L	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	309	LRR 2.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			AGCTGAACCTCTCCGACAACC	0.632											OREG0023521	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	40					0	0	1	0	0
TM2D3	80213	broad.mit.edu	37	15	102190335	102190335	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:102190335T>C	uc002bxi.2	-	3	229	c.199A>G	c.(199-201)AAG>GAG	p.K67E	TM2D3_uc010usg.1_Missense_Mutation_p.K41E|TM2D3_uc002bxh.2_Missense_Mutation_p.K2E|TM2D3_uc002bxj.2_Missense_Mutation_p.K41E|TM2D3_uc002bxk.2_Missense_Mutation_p.K2E|TM2D3_uc010ush.1_Missense_Mutation_p.K67E	NM_078474	NP_510883	Q9BRN9	TM2D3_HUMAN	TM2 domain containing 3 isoform a	67						integral to membrane				ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CTCGGACACTTCATCACATAA	0.423													4	45					0	0	1	0	0
OR4F6	390648	broad.mit.edu	37	15	102346157	102346157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr15:102346157C>T	uc010utr.1	+	1	235	c.235C>T	c.(235-237)CCC>TCC	p.P79S		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	79	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			CTCCACAGCTCCCAAGATGAT	0.463													14	122					0	0	1	0	0
POLR3K	51728	broad.mit.edu	37	16	97479	97479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:97479G>A	uc002cfi.1	-	3	317	c.278C>T	c.(277-279)ACC>ATC	p.T93I		NM_016310	NP_057394	Q9Y2Y1	RPC10_HUMAN	DNA directed RNA polymerase III polypeptide K	93	TFIIS-type.				innate immune response|response to virus|transcription from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|zinc ion binding				0		all_cancers(16;9.01e-08)|all_epithelial(16;7.64e-07)|Hepatocellular(780;0.000325)|Lung NSC(18;0.0104)|all_lung(18;0.0239)				CTTGTAGAAGGTGGTCATCGG	0.552													10	55					0	0	1	0	0
ARHGDIG	398	broad.mit.edu	37	16	332476	332476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:332476G>A	uc002cgm.1	+	5	499	c.424G>A	c.(424-426)GAG>AAG	p.E142K	PDIA2_uc002cgn.1_5'UTR|PDIA2_uc010bqt.1_5'Flank|PDIA2_uc002cgo.1_5'Flank	NM_001176	NP_001167	Q99819	GDIR3_HUMAN	Rho GDP dissociation inhibitor (GDI) gamma	142					negative regulation of cell adhesion|regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytoplasmic membrane-bounded vesicle|cytosol	GTPase activator activity|Rho GDP-dissociation inhibitor activity	p.E142K(1)		central_nervous_system(1)	1		all_cancers(16;6.71e-07)|all_epithelial(16;1.59e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00769)|all_lung(18;0.0186)				GGTCCACAGGGAGATTGTCAG	0.716													10	24					0	0	1	0	0
AXIN1	8312	broad.mit.edu	37	16	343592	343592	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:343592G>A	uc002cgp.1	-	8	2259	c.2082C>T	c.(2080-2082)ACC>ACT	p.T694T	AXIN1_uc002cgq.1_Silent_p.T694T	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	694	Interaction with RNF111.|Interaction with PPP2CA.|Interaction with HIPK2 (By similarity).				activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				GGGGTGGCATGGTGGGGTCTT	0.662													18	150					0	0	1	0	0
MRPL28	10573	broad.mit.edu	37	16	419071	419071	+	Silent	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:419071G>C	uc002cgr.1	-	2	454	c.438C>G	c.(436-438)CTC>CTG	p.L146L	MRPL28_uc010bqu.1_Silent_p.L146L|MRPL28_uc002cgs.1_Silent_p.L146L|MRPL28_uc002cgt.1_Silent_p.L146L	NM_006428	NP_006419	Q13084	RM28_HUMAN	mitochondrial ribosomal protein L28 precursor	146					translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0		Hepatocellular(16;0.000105)|Lung NSC(18;0.0324)|all_lung(18;0.064)				CGCTTGCCTTGAGGATGTAAA	0.587													5	28					0	0	1	0	0
RAB11FIP3	9727	broad.mit.edu	37	16	570755	570755	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:570755G>A	uc002chf.2	+	14	2526	c.2187G>A	c.(2185-2187)GAG>GAA	p.E729E	RAB11FIP3_uc010uuf.1_Silent_p.E433E|RAB11FIP3_uc010uug.1_Silent_p.E464E	NM_014700	NP_055515	O75154	RFIP3_HUMAN	rab11-family interacting protein 3 isoform 1	729	FIP-RBD.				cell cycle|cytokinesis|endocytic recycling|protein transport	centrosome|cleavage furrow|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding				0		Hepatocellular(16;0.0218)				AGCAGGAGGAGATCAACTTCC	0.587													5	40					0	0	1	0	0
PRR25	388199	broad.mit.edu	37	16	857646	857646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:857646G>A	uc010uut.1	+	2	643	c.643G>A	c.(643-645)GAT>AAT	p.D215N		NM_001013638	NP_001013660	Q96S07	PRR25_HUMAN	proline rich 25	215										large_intestine(1)	1						CCCTCTTACAGGTGGGGAAAC	0.706													3	23					0	0	1	0	0
CACNA1H	8912	broad.mit.edu	37	16	1246001	1246001	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:1246001C>T	uc002cks.2	+	5	869	c.621C>T	c.(619-621)CTC>CTT	p.L207L	CACNA1H_uc002ckt.2_Silent_p.L207L	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	207	Helical; Name=S4 of repeat I; (Potential).|I.				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	TGCGGCCCCTCCGCGCCATCA	0.662													6	61					0	0	1	0	0
TPSB2	64499	broad.mit.edu	37	16	1279642	1279642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:1279642C>T	uc002cky.2	-	3	181	c.158G>A	c.(157-159)CGA>CAA	p.R53Q	TPSB2_uc010brk.1_RNA|TPSB2_uc002ckx.2_5'UTR	NM_024164	NP_077078	P20231	TRYB2_HUMAN	tryptase beta 2 precursor	53	Peptidase S1.		HGP -> RDR (in beta-III).		proteolysis	extracellular region	protein binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				CATCCAGTATCGGTCGCGGAC	0.701													5	55					0	0	1	0	0
TPSD1	23430	broad.mit.edu	37	16	1306629	1306629	+	Silent	SNP	C	T	T	rs35609827		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:1306629C>T	uc002clb.1	+	2	204	c.195C>T	c.(193-195)TTC>TTT	p.F65F	TPSD1_uc010brm.1_Silent_p.F3F	NM_012217	NP_036349	Q9BZJ3	TRYD_HUMAN	tryptase delta 1 precursor	65	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				GGATGCACTTCTGCGGGGGCT	0.682													16	94					0	0	1	0	0
TELO2	9894	broad.mit.edu	37	16	1556245	1556245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:1556245C>T	uc002cly.2	+	17	2332	c.2041C>T	c.(2041-2043)CCG>TCG	p.P681S		NM_016111	NP_057195	Q9Y4R8	TELO2_HUMAN	TEL2, telomere maintenance 2, homolog	681						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding				0		Hepatocellular(780;0.219)				GCAGGGTGGCCCGAGGCAGGG	0.652													8	86					0	0	1	0	0
GFER	2671	broad.mit.edu	37	16	2035946	2035946	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2035946C>A	uc002cob.2	+	3	605	c.535C>A	c.(535-537)CGC>AGC	p.R179S	GFER_uc002coc.2_Missense_Mutation_p.R104S	NM_005262	NP_005253	P55789	ALR_HUMAN	erv1-like growth factor	179	ERV/ALR sulfhydryl oxidase.				cell proliferation|spermatogenesis	extracellular region|mitochondrial intermembrane space	growth factor activity|thiol oxidase activity				0						TGAAGTGAACCGCAAGCTGGG	0.602													6	67					0.00198382	0.00200104	1	1	0
CASKIN1	57524	broad.mit.edu	37	16	2231248	2231248	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2231248C>T	uc010bsg.1	-	18	2153	c.2121G>A	c.(2119-2121)CAG>CAA	p.Q707Q		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	707					signal transduction	cytoplasm				skin(2)	2						CCAGCAGCTCCTGCGAGCTGC	0.592													6	17					0	0	1	0	0
ABCA3	21	broad.mit.edu	37	16	2333321	2333322	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2333321_2333322GG>AA	uc002cpy.1	-	26	4612_4613	c.3900_3901CC>TT	c.(3898-3903)GCCCCG>GCTTCG	p.P1301S	ABCA3_uc010bsk.1_Missense_Mutation_p.P1243S	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	1301					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				CCGACCCCCGGGGCGCTCCAGG	0.653													11	52					0	0	1	0	0
ABCA3	21	broad.mit.edu	37	16	2350101	2350101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2350101C>T	uc002cpy.1	-	13	2228	c.1516G>A	c.(1516-1518)GAA>AAA	p.E506K	ABCA3_uc010bsk.1_Missense_Mutation_p.E448K|ABCA3_uc010bsl.1_Missense_Mutation_p.E506K	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	506					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				TCACTGTCTTCTTCCTCCTTC	0.557													9	116					0	0	1	0	0
ABCA3	21	broad.mit.edu	37	16	2367371	2367371	+	Missense_Mutation	SNP	C	T	T	rs148726153		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2367371C>T	uc002cpy.1	-	10	1736	c.1024G>A	c.(1024-1026)GAC>AAC	p.D342N	ABCA3_uc010bsk.1_Missense_Mutation_p.D342N|ABCA3_uc010bsl.1_Missense_Mutation_p.D342N	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	342					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				AGGGAGGGGTCGCTGCGGGAC	0.622													11	92					0	0	1	0	0
PDPK1	5170	broad.mit.edu	37	16	2636724	2636724	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2636724C>T	uc002cqs.2	+	11	1317	c.1173C>T	c.(1171-1173)TCC>TCT	p.S391S	PDPK1_uc002cqt.2_Silent_p.S264S|PDPK1_uc010bsn.2_Silent_p.S391S|PDPK1_uc002cqu.2_Silent_p.S364S	NM_002613	NP_002604	O15530	PDPK1_HUMAN	3-phosphoinositide dependent protein kinase-1	391	Poly-Ser.				actin cytoskeleton organization|activation of protein kinase B activity|insulin receptor signaling pathway|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|peptidyl-threonine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|synaptic transmission|T cell costimulation|T cell receptor signaling pathway	cytosol|nucleoplasm|plasma membrane	3-phosphoinositide-dependent protein kinase activity|ATP binding			central_nervous_system(2)|ovary(1)	3		Ovarian(90;0.17)			Celecoxib(DB00482)	TGTCTTCGTCCTCCTCCTCAC	0.552													7	91					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2811636	2811636	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2811636C>T	uc002crk.2	+	11	1656	c.1107C>T	c.(1105-1107)CTC>CTT	p.L369L	SRRM2_uc002crj.1_Silent_p.L273L|SRRM2_uc002crl.1_Silent_p.L369L|SRRM2_uc010bsu.1_Silent_p.L273L	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	369	Pro-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CCACTCCGCTCCTTGCTGAGC	0.612													8	110					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2812843	2812843	+	Missense_Mutation	SNP	C	T	T	rs142703288		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2812843C>T	uc002crk.2	+	11	2863	c.2314C>T	c.(2314-2316)CGC>TGC	p.R772C	SRRM2_uc002crj.1_Missense_Mutation_p.R676C|SRRM2_uc002crl.1_Missense_Mutation_p.R772C|SRRM2_uc010bsu.1_Missense_Mutation_p.R676C	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	772	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						AGCAAAATCTCGCTTGTCTTT	0.512													15	201					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2816824	2816824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2816824C>T	uc002crk.2	+	11	6844	c.6295C>T	c.(6295-6297)CAT>TAT	p.H2099Y	SRRM2_uc002crj.1_Missense_Mutation_p.H2003Y|SRRM2_uc002crl.1_Missense_Mutation_p.H2099Y|SRRM2_uc010bsu.1_Missense_Mutation_p.H2003Y	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	2099	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						AACAAGAAATCATTCTGGTTC	0.512													30	121					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2816884	2816884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2816884C>T	uc002crk.2	+	11	6904	c.6355C>T	c.(6355-6357)CGT>TGT	p.R2119C	SRRM2_uc002crj.1_Missense_Mutation_p.R2023C|SRRM2_uc002crl.1_Missense_Mutation_p.R2119C|SRRM2_uc010bsu.1_Missense_Mutation_p.R2023C	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	2119	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CTGCTTCAGTCGTCCTAGCAT	0.517													11	156					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2817587	2817587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2817587C>T	uc002crk.2	+	11	7607	c.7058C>T	c.(7057-7059)GCC>GTC	p.A2353V	SRRM2_uc002crj.1_Missense_Mutation_p.A2257V|SRRM2_uc002crl.1_Missense_Mutation_p.A2353V|SRRM2_uc010bsu.1_Missense_Mutation_p.A2257V	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	2353	Ala-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GTGAATATTGCCGGCTCCAGA	0.627													11	115					0	0	1	0	0
ZG16B	124220	broad.mit.edu	37	16	2882008	2882008	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2882008C>T	uc002cru.2	+	4	551	c.475C>T	c.(475-477)CAA>TAA	p.Q159*		NM_145252	NP_660295	Q96DA0	ZG16B_HUMAN	zymogen granule protein 16 homolog B precursor	159						extracellular region	sugar binding			ovary(1)	1						CTACCCCAGCCAAGAGGGGCA	0.527													10	73					0	0	1	0	0
PRSS22	64063	broad.mit.edu	37	16	2904000	2904000	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2904000G>A	uc002cry.1	-	5	649	c.583C>T	c.(583-585)CTG>TTG	p.L195L	PRSS22_uc002crz.1_Silent_p.L85L	NM_022119	NP_071402	Q9GZN4	BSSP4_HUMAN	protease, serine, 22 precursor	195	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			central_nervous_system(1)	1						AGCTTCTGCAGGGTCTGAGGG	0.582													12	115					0	0	1	0	0
PRSS22	64063	broad.mit.edu	37	16	2905650	2905650	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2905650G>A	uc002cry.1	-	4	550	c.484C>T	c.(484-486)CTA>TTA	p.L162L	PRSS22_uc002crz.1_Intron	NM_022119	NP_071402	Q9GZN4	BSSP4_HUMAN	protease, serine, 22 precursor	162	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			central_nervous_system(1)	1						GCATCAGGTAGGCAGATGGGC	0.592													9	72					0	0	1	0	0
PRSS22	64063	broad.mit.edu	37	16	2905736	2905736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:2905736G>A	uc002cry.1	-	4	464	c.398C>T	c.(397-399)TCC>TTC	p.S133F	PRSS22_uc002crz.1_Intron	NM_022119	NP_071402	Q9GZN4	BSSP4_HUMAN	protease, serine, 22 precursor	133	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			central_nervous_system(1)	1						TTCCTTCCAGGAATACACAGG	0.622													11	61					0	0	1	0	0
CLDN9	9080	broad.mit.edu	37	16	3063714	3063714	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:3063714C>T	uc010uwo.1	+	1	1258	c.351C>T	c.(349-351)ATC>ATT	p.I117I		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	117	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						AGGCCCGTATCGTGCTCACCG	0.647													9	111					0	0	1	0	0
OR1F2P	26184	broad.mit.edu	37	16	3266316	3266316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:3266316G>A	uc010uwv.1	+	1	755	c.607G>A	c.(607-609)GCC>ACC	p.A203T		NR_002169				RecName: Full=Olfactory receptor 1F2; AltName: Full=OLFmf2;												0						AAGATGGAAAGCCTTCTCCAC	0.527													4	22					0	0	1	0	0
MEFV	4210	broad.mit.edu	37	16	3293274	3293274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:3293274G>A	uc002cun.1	-	10	2253	c.2213C>T	c.(2212-2214)TCC>TTC	p.S738F		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	738	B30.2/SPRY.				inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	ATAGATGTGGGATCTGGCTGT	0.542													4	92					0	0	1	0	0
MEFV	4210	broad.mit.edu	37	16	3306549	3306549	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:3306549C>T	uc002cun.1	-	1	79	c.39G>A	c.(37-39)CTG>CTA	p.L13L		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	13	DAPIN.				inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	CCAGCTCCTCCAGGGTGGACA	0.567													9	149					0	0	1	0	0
ZNF75A	7627	broad.mit.edu	37	16	3367222	3367222	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:3367222C>T	uc002cut.3	+	6	770	c.244C>T	c.(244-246)CAG>TAG	p.Q82*	ZNF75A_uc002cuv.3_RNA	NM_153028	NP_694573	Q96N20	ZN75A_HUMAN	zinc finger protein 75a	82					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						TGAAAATCATCAGCCTGTGTC	0.373													11	57					0	0	1	0	0
OR2C1	4993	broad.mit.edu	37	16	3405943	3405943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:3405943G>A	uc002cuw.1	+	1	55	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_012368	NP_036500	O95371	OR2C1_HUMAN	olfactory receptor, family 2, subfamily C,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AACCAGTGATGGACGGGGTGA	0.458													6	57					0	0	1	0	0
OR2C1	4993	broad.mit.edu	37	16	3406279	3406279	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:3406279C>T	uc002cuw.1	+	1	391	c.339C>T	c.(337-339)ATC>ATT	p.I113I		NM_012368	NP_036500	O95371	OR2C1_HUMAN	olfactory receptor, family 2, subfamily C,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCGAGTGCATCCTGCTGGTGG	0.582													4	36					0	0	1	0	0
NLRC3	197358	broad.mit.edu	37	16	3611705	3611705	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:3611705G>A	uc010btn.2	-	6	2424	c.2013C>T	c.(2011-2013)ATC>ATT	p.I671I		NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	671	LRR 3.				I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						TGTGTTACCTGATCTTCTGAA	0.617													8	78					0	0	1	0	0
BTBD12	84464	broad.mit.edu	37	16	3633422	3633422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:3633422G>A	uc002cvp.2	-	14	5456	c.4829C>T	c.(4828-4830)TCC>TTC	p.S1610F		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1610	Interaction with MUS81.|Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CTCGTCCTCGGAGTCTGAGTC	0.602								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				13	90					0	0	1	0	0
BTBD12	84464	broad.mit.edu	37	16	3640520	3640520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:3640520G>A	uc002cvp.2	-	12	3746	c.3119C>T	c.(3118-3120)CCC>CTC	p.P1040L		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1040	Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CCCGCCCTGGGGAGGCCCCAA	0.667								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				9	120					0	0	1	0	0
BTBD12	84464	broad.mit.edu	37	16	3658900	3658900	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:3658900G>A	uc002cvp.2	-	2	693	c.66C>T	c.(64-66)GCC>GCT	p.A22A	BTBD12_uc002cvq.1_Silent_p.A22A	NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	22	Interaction with C20orf94, ERCC4 and MSH2.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						TCCCAGGACAGGCAGACAGAT	0.468								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				5	47					0	0	1	0	0
CREBBP	1387	broad.mit.edu	37	16	3779715	3779715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:3779715G>A	uc002cvv.2	-	31	5537	c.5333C>T	c.(5332-5334)TCG>TTG	p.S1778L	CREBBP_uc002cvw.2_Missense_Mutation_p.S1740L	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	1778	TAZ-type 2.|Interaction with TRERF1.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GTGCACCAGCGACTGGATGCA	0.662			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				7	36					0	0	1	0	0
CREBBP	1387	broad.mit.edu	37	16	3900705	3900705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:3900705G>A	uc002cvv.2	-	2	595	c.391C>T	c.(391-393)CCC>TCC	p.P131S	CREBBP_uc002cvw.2_Missense_Mutation_p.P131S	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	131					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GGCAGGCTGGGGGCTGAAGAA	0.642			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				8	91					0	0	1	0	0
ADCY9	115	broad.mit.edu	37	16	4043411	4043411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:4043411G>A	uc002cvx.2	-	4	2524	c.1985C>T	c.(1984-1986)ACC>ATC	p.T662I		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	662	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						TGTTACCTTGGTGCTGTTTTT	0.532													6	50					0	0	1	0	0
ADCY9	115	broad.mit.edu	37	16	4057515	4057515	+	Missense_Mutation	SNP	G	A	A	rs144065949	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:4057515G>A	uc002cvx.2	-	3	2277	c.1738C>T	c.(1738-1740)CGC>TGC	p.R580C		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	580	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						CAGCTGCAGCGAGACTCCTTG	0.522													16	51					0	0	1	0	0
SRL	6345	broad.mit.edu	37	16	4253225	4253225	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:4253225G>A	uc002cvz.3	-	3	214	c.201C>T	c.(199-201)TCC>TCT	p.S67S	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	526						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						GAGGCTTGATGGATGAGTGGT	0.567													7	100					0	0	1	0	0
ANKS3	124401	broad.mit.edu	37	16	4777097	4777097	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:4777097G>A	uc002cxj.1	-	4	547	c.252C>T	c.(250-252)ATC>ATT	p.I84I	ANKS3_uc002cxi.1_Silent_p.I11I|ANKS3_uc002cxk.2_Intron|ANKS3_uc002cxl.2_5'UTR|ANKS3_uc010uxs.1_Silent_p.I11I|ANKS3_uc002cxm.2_Intron	NM_133450	NP_597707	Q6ZW76	ANKS3_HUMAN	ankyrin repeat and sterile alpha motif domain	84	ANK 2.										0						GCAGGTGCACGATTGTGTCGT	0.542													14	68					0	0	1	0	0
UBN1	29855	broad.mit.edu	37	16	4925047	4925047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:4925047C>T	uc002cyb.2	+	15	2975	c.2636C>T	c.(2635-2637)TCC>TTC	p.S879F	UBN1_uc010uxw.1_Missense_Mutation_p.S879F|UBN1_uc002cyc.2_Missense_Mutation_p.S879F	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	879	Ser-rich.				chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						CCAGCCTCGTCCTCTTCTGCC	0.572													8	79					0	0	1	0	0
PPL	5493	broad.mit.edu	37	16	4952413	4952413	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:4952413C>T	uc002cyd.1	-	4	522	c.432G>A	c.(430-432)GAG>GAA	p.E144E		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	144					keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						ATACCAGCTTCTCCTCCACCA	0.632													7	72					0	0	1	0	0
ALG1	56052	broad.mit.edu	37	16	5125427	5125427	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:5125427C>T	uc002cym.2	+	4	470	c.429C>T	c.(427-429)TTC>TTT	p.F143F	ALG1_uc002cyj.2_Silent_p.F32F|ALG1_uc002cyn.2_Silent_p.F143F|ALG1_uc010bue.2_Silent_p.F32F|ALG1_uc010uxy.1_Silent_p.F32F	NM_019109	NP_061982	Q9BT22	ALG1_HUMAN	beta-1,4-mannosyltransferase	143	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|lipopolysaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	chitobiosyldiphosphodolichol beta-mannosyltransferase activity			upper_aerodigestive_tract(1)|ovary(1)	2		Ovarian(90;0.0164)				TCTGCTGGTTCGTGGGCTGCC	0.542													16	140					0	0	1	0	0
A2BP1	54715	broad.mit.edu	37	16	7568213	7568213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:7568213C>T	uc002cys.2	+	5	1080	c.92C>T	c.(91-93)GCT>GTT	p.A31V	A2BP1_uc010buf.1_Missense_Mutation_p.A31V|A2BP1_uc002cyr.1_Missense_Mutation_p.A31V|A2BP1_uc002cyt.2_Missense_Mutation_p.A31V|A2BP1_uc010uxz.1_Missense_Mutation_p.A74V|A2BP1_uc010uya.1_Missense_Mutation_p.A67V|A2BP1_uc002cyv.1_Missense_Mutation_p.A31V|A2BP1_uc010uyb.1_Missense_Mutation_p.A31V|A2BP1_uc002cyw.2_Missense_Mutation_p.A51V|A2BP1_uc002cyy.2_Missense_Mutation_p.A51V|A2BP1_uc002cyx.2_Missense_Mutation_p.A51V|A2BP1_uc010uyc.1_Missense_Mutation_p.A51V	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	31					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		GCCCAGTTTGCTCCCCCGCAG	0.592													7	116					0	0	1	0	0
A2BP1	54715	broad.mit.edu	37	16	7680638	7680638	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:7680638G>A	uc002cys.2	+	11	1698	c.710G>A	c.(709-711)GGA>GAA	p.G237E	A2BP1_uc010buf.1_Missense_Mutation_p.G237E|A2BP1_uc002cyr.1_Missense_Mutation_p.G236E|A2BP1_uc002cyt.2_Intron|A2BP1_uc010uxz.1_Missense_Mutation_p.G280E|A2BP1_uc010uya.1_Missense_Mutation_p.G194E|A2BP1_uc002cyv.1_Missense_Mutation_p.G237E|A2BP1_uc010uyb.1_Missense_Mutation_p.G237E|A2BP1_uc002cyw.2_Missense_Mutation_p.G257E|A2BP1_uc002cyy.2_Missense_Mutation_p.G257E|A2BP1_uc002cyx.2_Missense_Mutation_p.G257E|A2BP1_uc010uyc.1_Intron	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	237					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		AACCAGGAGGGATCTTCCATG	0.488													4	35					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857944	9857944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:9857944C>T	uc002czo.3	-	13	4005	c.3457G>A	c.(3457-3459)GAT>AAT	p.D1153N	GRIN2A_uc010uym.1_Missense_Mutation_p.D1153N|GRIN2A_uc010uyn.1_Missense_Mutation_p.D996N|GRIN2A_uc002czr.3_Missense_Mutation_p.D1153N	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1153	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding	p.D1153N(1)		skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCACTGGGATCCTGGTAGGGG	0.522													10	74					0	0	1	0	0
TEKT5	146279	broad.mit.edu	37	16	10788325	10788325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:10788325C>T	uc002czz.1	-	1	478	c.406G>A	c.(406-408)GGC>AGC	p.G136S		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	136	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						CGGCAGGTGCCCTCCTGCATC	0.627													13	112					0	0	1	0	0
TEKT5	146279	broad.mit.edu	37	16	10788371	10788371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:10788371C>T	uc002czz.1	-	1	432	c.360G>A	c.(358-360)ATG>ATA	p.M120I		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	120	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						GCAAGAGCCTCATGGAGTCAT	0.657													6	77					0	0	1	0	0
CIITA	4261	broad.mit.edu	37	16	10996533	10996533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:10996533C>T	uc002dai.3	+	8	780	c.647C>T	c.(646-648)TCG>TTG	p.S216L	CIITA_uc002daj.3_Missense_Mutation_p.S217L|CIITA_uc002dak.3_Missense_Mutation_p.S167L|CIITA_uc002dag.2_Missense_Mutation_p.S216L|CIITA_uc002dah.2_Missense_Mutation_p.S168L|CIITA_uc010bup.1_Missense_Mutation_p.S216L	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	216					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						TCCAGTTCCTCGTTGAGCTGC	0.483			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								10	49					0	0	1	0	0
CLEC16A	23274	broad.mit.edu	37	16	11137908	11137908	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:11137908C>T	uc002dao.2	+	16	2024	c.1794C>T	c.(1792-1794)CAC>CAT	p.H598H	CLEC16A_uc002dan.3_Silent_p.H580H	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	598								p.0?(1)		ovary(1)|central_nervous_system(1)	2						AAAGTGTTCACCTTGTACGAC	0.438													3	43					0	0	1	0	0
TNFRSF17	608	broad.mit.edu	37	16	12061600	12061600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:12061600G>A	uc002dbv.2	+	3	669	c.451G>A	c.(451-453)GAA>AAA	p.E151K	TNFRSF17_uc010buy.2_3'UTR|TNFRSF17_uc010buz.2_Missense_Mutation_p.E102K	NM_001192	NP_001183	Q02223	TNR17_HUMAN	tumor necrosis factor receptor superfamily,	151	Cytoplasmic (Potential).				cell proliferation|multicellular organismal development	endomembrane system|integral to membrane|plasma membrane					0						AGCTATGGAGGAAGGCGCAAC	0.498			T	IL2	intestinal T-cell lymphoma								10	46					0	0	1	0	0
KIAA0430	9665	broad.mit.edu	37	16	15702250	15702250	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:15702250G>A	uc002ddr.2	-	21	4273	c.4080C>T	c.(4078-4080)CTC>CTT	p.L1360L	KIAA0430_uc002ddq.2_Silent_p.L1194L|KIAA0430_uc010uzv.1_Silent_p.L1356L|KIAA0430_uc010uzw.1_Silent_p.L1359L	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	1359						peroxisome	nucleotide binding|RNA binding				0						ATTCTGTAAGGAGATCTGTCA	0.423													5	39					0	0	1	0	0
KIAA0430	9665	broad.mit.edu	37	16	15709696	15709696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:15709696G>A	uc002ddr.2	-	16	3437	c.3244C>T	c.(3244-3246)CCC>TCC	p.P1082S	KIAA0430_uc002ddq.2_Missense_Mutation_p.P916S|KIAA0430_uc010uzv.1_Missense_Mutation_p.P1078S|KIAA0430_uc010uzw.1_Missense_Mutation_p.P1081S	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	1081	Poly-Pro.					peroxisome	nucleotide binding|RNA binding				0						CCAGTGTTGGGAGGCGGGGGC	0.463													8	76					0	0	1	0	0
MYH11	4629	broad.mit.edu	37	16	15811116	15811116	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:15811116C>T	uc002ddy.2	-	38	5492	c.5385G>A	c.(5383-5385)AAG>AAA	p.K1795K	MYH11_uc002ddv.2_Silent_p.K1802K|MYH11_uc002ddw.2_Silent_p.K1795K|MYH11_uc002ddx.2_Silent_p.K1802K|MYH11_uc010bvg.2_Silent_p.K1627K|NDE1_uc010uzy.1_Intron|NDE1_uc002dds.2_Intron|MYH11_uc010bvh.2_Silent_p.K501K	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1795	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						TCCGGAGCTCCTTGTTCTGCC	0.647			T	CBFB	AML								9	113					0	0	1	0	0
MYH11	4629	broad.mit.edu	37	16	15829336	15829336	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:15829336C>T	uc002ddy.2	-	26	3500	c.3393G>A	c.(3391-3393)CGG>CGA	p.R1131R	MYH11_uc002ddv.2_Silent_p.R1138R|MYH11_uc002ddw.2_Silent_p.R1131R|MYH11_uc002ddx.2_Silent_p.R1138R|MYH11_uc010bvg.2_Silent_p.R963R	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1131	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						TCCTGGCGGCCCGCTCTGAGT	0.587			T	CBFB	AML								15	126					0	0	1	0	0
MYH11	4629	broad.mit.edu	37	16	15835522	15835522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:15835522G>A	uc002ddy.2	-	22	2764	c.2657C>T	c.(2656-2658)ACC>ATC	p.T886I	MYH11_uc002ddv.2_Missense_Mutation_p.T893I|MYH11_uc002ddw.2_Missense_Mutation_p.T886I|MYH11_uc002ddx.2_Missense_Mutation_p.T893I|MYH11_uc010bvg.2_Missense_Mutation_p.T718I	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	886	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CTTCTCCTCGGTCAGCTGCAC	0.637			T	CBFB	AML								8	88					0	0	1	0	0
MYH11	4629	broad.mit.edu	37	16	15844140	15844140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:15844140G>A	uc002ddy.2	-	16	2020	c.1913C>T	c.(1912-1914)TCG>TTG	p.S638L	MYH11_uc002ddv.2_Missense_Mutation_p.S645L|MYH11_uc002ddw.2_Missense_Mutation_p.S638L|MYH11_uc002ddx.2_Missense_Mutation_p.S645L|MYH11_uc010bvg.2_Missense_Mutation_p.S470L|MYH11_uc002dea.1_Missense_Mutation_p.S344L	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	638	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GCTGGGCAGCGAGCTCTCCGT	0.627			T	CBFB	AML								4	29					0	0	1	0	0
MYH11	4629	broad.mit.edu	37	16	15850300	15850300	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:15850300G>A	uc002ddy.2	-	14	1754	c.1647C>T	c.(1645-1647)TTC>TTT	p.F549F	MYH11_uc002ddv.2_Silent_p.F556F|MYH11_uc002ddw.2_Silent_p.F549F|MYH11_uc002ddx.2_Silent_p.F556F|MYH11_uc010bvg.2_Silent_p.F381F|MYH11_uc002dea.1_Silent_p.F255F	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	549	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GCTTCTCCACGAAAGACTTGT	0.562			T	CBFB	AML						OREG0023636	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	47					0	0	1	0	0
ABCC6	368	broad.mit.edu	37	16	16256934	16256934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:16256934C>T	uc002den.3	-	24	3459	c.3422G>A	c.(3421-3423)CGA>CAA	p.R1141Q	ABCC6_uc010bvo.2_Intron	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	1141	ABC transmembrane type-1 2.|Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		GGCCTGGGTTCGGAATGCCCG	0.597													9	93					0	0	1	0	0
XYLT1	64131	broad.mit.edu	37	16	17235223	17235223	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:17235223G>A	uc002dfa.2	-	7	1459	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	458	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						GCTTCCGAATGAACCTGGGAG	0.572													5	29					0	0	1	0	0
ABCC6P1	653190	broad.mit.edu	37	16	18602512	18602512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:18602512G>A	uc002dfg.2	+	8	910	c.710G>A	c.(709-711)AGC>AAC	p.S237N	ABCC6P1_uc010vam.1_Missense_Mutation_p.S180N	NR_003569				SubName: Full=cDNA FLJ51267, highly similar to Multidrug resistance-associated protein 6;												0						CAAGAAGGGAGCCAGTGGCGC	0.567													5	35					0	0	1	0	0
TMC7	79905	broad.mit.edu	37	16	19049239	19049239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:19049239G>A	uc002dfq.2	+	8	1179	c.1049G>A	c.(1048-1050)AGG>AAG	p.R350K	TMC7_uc010vao.1_Silent_p.K344K|TMC7_uc002dfp.2_Missense_Mutation_p.R350K|TMC7_uc010vap.1_Missense_Mutation_p.R240K	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	350	Cytoplasmic (Potential).					integral to membrane				skin(2)|ovary(1)	3						ATAGCAGAAAGGACCTCAGAA	0.403													6	38					0	0	1	0	0
SYT17	51760	broad.mit.edu	37	16	19236136	19236136	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:19236136G>C	uc002dfw.2	+	7	1535	c.1204G>C	c.(1204-1206)GAA>CAA	p.E402Q	SYT17_uc002dfx.2_Missense_Mutation_p.E341Q|SYT17_uc002dfy.2_Missense_Mutation_p.E398Q|SYT17_uc002dfv.1_Missense_Mutation_p.E341Q	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	402	C2 2.					membrane|synaptic vesicle	transporter activity			ovary(1)	1						AGAAGAACTGGAAAATGCCAG	0.448													8	37					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19498640	19498640	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:19498640C>T	uc002dgc.3	+	17	3314	c.2565C>T	c.(2563-2565)ACC>ACT	p.T855T	TMC5_uc010vaq.1_Silent_p.T803T|TMC5_uc002dgb.3_Silent_p.T855T|TMC5_uc010var.1_Silent_p.T855T|TMC5_uc002dgd.1_Silent_p.T609T|TMC5_uc002dge.3_Silent_p.T609T|TMC5_uc002dgf.3_Silent_p.T538T|TMC5_uc002dgg.3_Silent_p.T496T	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	855	Helical; (Potential).					integral to membrane				skin(1)	1						TGGCCATCACCATCTGGAGGT	0.448													4	28					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19501790	19501790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:19501790G>A	uc002dgc.3	+	18	3396	c.2647G>A	c.(2647-2649)GAC>AAC	p.D883N	TMC5_uc010vaq.1_Missense_Mutation_p.D831N|TMC5_uc002dgb.3_Intron|TMC5_uc010var.1_Missense_Mutation_p.D883N|TMC5_uc002dgd.1_Missense_Mutation_p.D637N|TMC5_uc002dge.3_Missense_Mutation_p.D637N|TMC5_uc002dgf.3_Missense_Mutation_p.D566N|TMC5_uc002dgg.3_Missense_Mutation_p.D524N	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	883	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						CAGCTGGATCGACACCCTAAG	0.483													13	160					0	0	1	0	0
IQCK	124152	broad.mit.edu	37	16	19746703	19746703	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:19746703C>T	uc002dgr.2	+	5	1104	c.405C>T	c.(403-405)TTC>TTT	p.F135F	IQCK_uc002dgs.2_RNA|IQCK_uc010vat.1_Silent_p.F135F|IQCK_uc010bwc.2_Intron|IQCK_uc010vau.1_Silent_p.F47F	NM_153208	NP_694940	Q8N0W5	IQCK_HUMAN	IQ motif containing K	135										skin(1)	1						TGGAAACTTTCATCTTTCCTG	0.418													4	27					0	0	1	0	0
GPR139	124274	broad.mit.edu	37	16	20043426	20043426	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20043426G>A	uc002dgu.1	-	2	855	c.693C>T	c.(691-693)TTC>TTT	p.F231F	GPR139_uc010vaw.1_Silent_p.F138F	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	231	Helical; Name=6; (Potential).					integral to membrane|plasma membrane				ovary(2)	2						AGGTAATGGTGAACAAGATGG	0.517													7	36					0	0	1	0	0
GPR139	124274	broad.mit.edu	37	16	20043636	20043636	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20043636G>A	uc002dgu.1	-	2	645	c.483C>T	c.(481-483)ATC>ATT	p.I161I	GPR139_uc010vaw.1_Silent_p.I68I	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	161	Helical; Name=4; (Potential).					integral to membrane|plasma membrane				ovary(2)	2						AGTAATAGGGGATGCTGGTCA	0.547													8	51					0	0	1	0	0
GPR139	124274	broad.mit.edu	37	16	20043854	20043854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20043854C>T	uc002dgu.1	-	2	427	c.265G>A	c.(265-267)GAT>AAT	p.D89N	GPR139_uc010vaw.1_5'UTR	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	89	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(2)	2						AAGATGAAATCTTCCAACAGG	0.468													6	34					0	0	1	0	0
GP2	2813	broad.mit.edu	37	16	20335465	20335465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20335465C>T	uc002dgv.2	-	3	291	c.208G>A	c.(208-210)GAT>AAT	p.D70N	GP2_uc002dgw.2_Missense_Mutation_p.D70N|GP2_uc002dgx.2_Intron|GP2_uc002dgy.2_Intron	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	70						anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						AAGGGTTCATCCAGGAGGGTG	0.557													9	44					0	0	1	0	0
ACSM5	54988	broad.mit.edu	37	16	20429402	20429402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20429402C>T	uc002dhe.2	+	3	373	c.226C>T	c.(226-228)CCT>TCT	p.P76S	ACSM5_uc002dhd.1_Missense_Mutation_p.P76S	NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	76					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						CCCCCCAAATCCTGCCTTCTG	0.493													4	26					0	0	1	0	0
ACSM5	54988	broad.mit.edu	37	16	20439148	20439148	+	Silent	SNP	C	T	T	rs12921787	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20439148C>T	uc002dhe.2	+	7	1107	c.960C>T	c.(958-960)GTC>GTT	p.V320V		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	320					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						TCTGCTGTGTCCCAACCATCT	0.473													8	117					0	0	1	0	0
ACSM5	54988	broad.mit.edu	37	16	20442358	20442358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20442358G>A	uc002dhe.2	+	9	1316	c.1169G>A	c.(1168-1170)GGA>GAA	p.G390E		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	390					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						ATCAAGTCTGGATCCATGGGG	0.537													11	134					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20480929	20480929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20480929G>A	uc010bwe.2	+	5	723	c.484G>A	c.(484-486)GAA>AAA	p.E162K	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Missense_Mutation_p.E83K|ACSM2A_uc002dhf.3_Missense_Mutation_p.E162K|ACSM2A_uc002dhg.3_Missense_Mutation_p.E162K|ACSM2A_uc010vay.1_Missense_Mutation_p.E83K	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	162					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						TGCTGGGGATGAAGTCATCCA	0.448													6	44					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20480946	20480946	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20480946G>A	uc010bwe.2	+	5	740	c.501G>A	c.(499-501)GTG>GTA	p.V167V	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Silent_p.V88V|ACSM2A_uc002dhf.3_Silent_p.V167V|ACSM2A_uc002dhg.3_Silent_p.V167V|ACSM2A_uc010vay.1_Silent_p.V88V	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	167					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						TCCAAGAAGTGGACACAGTGG	0.453													9	54					0	0	1	0	0
ACSM2A	123876	broad.mit.edu	37	16	20494445	20494445	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20494445G>T	uc010bwe.2	+	14	1814	c.1575G>T	c.(1573-1575)AAG>AAT	p.K525N	ACSM2A_uc002dhf.3_Missense_Mutation_p.K525N|ACSM2A_uc002dhg.3_Missense_Mutation_p.K525N|ACSM2A_uc010vay.1_Missense_Mutation_p.K446N|ACSM2A_uc002dhh.3_Missense_Mutation_p.K155N	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	525					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						AGCTCACCAAGGAGCTGCAGC	0.498													5	64					0.000602214	0.000607971	1	1	0
ACSM2B	348158	broad.mit.edu	37	16	20559468	20559468	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20559468C>T	uc002dhj.3	-	9	1224	c.1014G>A	c.(1012-1014)GGG>GGA	p.G338G	ACSM2B_uc002dhk.3_Silent_p.G338G|ACSM2B_uc010bwf.1_Silent_p.G338G	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	338					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						GAAGGGACTCCCCTCCAGCGA	0.532													14	62					0	0	1	0	0
ACSM1	116285	broad.mit.edu	37	16	20648726	20648726	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20648726G>A	uc002dhm.1	-	8	1232	c.1164C>T	c.(1162-1164)TTC>TTT	p.F388F	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Silent_p.F388F	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	388					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CCTTCCCCATGAAACCCGGCT	0.537													6	41					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20974974	20974974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20974974G>A	uc010vbe.1	-	53	10232	c.10232C>T	c.(10231-10233)GCT>GTT	p.A3411V	DNAH3_uc010vbd.1_Missense_Mutation_p.A846V	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3411					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity	p.A3411D(2)		ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCATTGGGGAGCTGGATTGGG	0.527													7	47					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20975918	20975918	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20975918C>T	uc010vbe.1	-	53	9288	c.9288G>A	c.(9286-9288)GAG>GAA	p.E3096E	DNAH3_uc010vbd.1_Silent_p.E531E	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3096	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TATTCGCCTTCTCCATGTTCT	0.468													7	101					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20976491	20976491	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20976491C>T	uc010vbe.1	-	53	8715	c.8715G>A	c.(8713-8715)CGG>CGA	p.R2905R	DNAH3_uc010vbd.1_Silent_p.R340R	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2905	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCAGTCGCTCCCGTTTGGGAG	0.592													11	142					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20986562	20986562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20986562C>T	uc010vbe.1	-	51	8252	c.8252G>A	c.(8251-8253)GGA>GAA	p.G2751E	DNAH3_uc010vbd.1_Missense_Mutation_p.G186E	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2751	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TACCTTGATTCCTTGGGCAAT	0.333													18	148					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20986682	20986682	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20986682G>A	uc010vbe.1	-	51	8132	c.8132C>T	c.(8131-8133)TCC>TTC	p.S2711F	DNAH3_uc010vbd.1_Missense_Mutation_p.S146F	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2711	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AGTTTCCTCGGAGGTGAGGAT	0.473													17	129					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20998678	20998678	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:20998678G>A	uc010vbe.1	-	47	6975	c.6975C>T	c.(6973-6975)TTC>TTT	p.F2325F	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2325					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCACCATGTTGAAAAAGACCT	0.413													12	71					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21035967	21035967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:21035967G>A	uc010vbe.1	-	39	5597	c.5597C>T	c.(5596-5598)TCC>TTC	p.S1866F		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1866	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GTCCATGTAGGAATCCTTCAG	0.542													4	32					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21060983	21060983	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:21060983G>A	uc010vbe.1	-	31	4368	c.4368C>T	c.(4366-4368)TCC>TCT	p.S1456S		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1456	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCAAACCATCGGAGCAGTTGA	0.507													5	85					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21078726	21078726	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:21078726C>T	uc010vbe.1	-	24	3396	c.3396G>A	c.(3394-3396)AGG>AGA	p.R1132R		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1132	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCACCAGAATCCTGTTATCTT	0.453													6	33					0	0	1	0	0
TMEM159	57146	broad.mit.edu	37	16	21181905	21181905	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:21181905C>T	uc002dif.3	+	3	605	c.244C>T	c.(244-246)CTG>TTG	p.L82L	TMEM159_uc002dig.3_RNA|TMEM159_uc010vbf.1_Silent_p.L106L|TMEM159_uc002dih.3_Silent_p.L82L	NM_020422	NP_065155	Q96B96	TM159_HUMAN	transmembrane protein 159	82	Helical; (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(48;0.0972)		GGCTGCTCTGCTGGGGGTCAT	0.458													6	80					0	0	1	0	0
ANKS4B	257629	broad.mit.edu	37	16	21262025	21262025	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:21262025G>A	uc010bwp.1	+	2	1181	c.1138G>A	c.(1138-1140)GAG>AAG	p.E380K	CRYM_uc010bwq.1_Intron	NM_145865	NP_665872	Q8N8V4	ANS4B_HUMAN	harmonin-interacting ankyrin-repeat containing	380	SAM.									ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0565)		CTGCTCTGATGAGGACCTTCA	0.512													9	57					0	0	1	0	0
OTOA	146183	broad.mit.edu	37	16	21728264	21728264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:21728264G>A	uc002djh.2	+	14	1526	c.1525G>A	c.(1525-1527)GAG>AAG	p.E509K	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.E430K|OTOA_uc002dji.2_Missense_Mutation_p.E185K|OTOA_uc010vbk.1_Missense_Mutation_p.E157K	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	523					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		AGGCATCGTGGAGATACAAGG	0.403													11	85					0	0	1	0	0
CDR2	1039	broad.mit.edu	37	16	22360638	22360638	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:22360638G>A	uc002dkn.2	-	4	776	c.468C>T	c.(466-468)CCC>CCT	p.P156P		NM_001802	NP_001793	Q01850	CDR2_HUMAN	cerebellar degeneration-related protein 2	156						nucleus	protein binding			skin(1)	1				GBM - Glioblastoma multiforme(48;0.0188)		ATGCAAAGCTGGGTGCCGGTT	0.537													10	98					0	0	1	0	0
HS3ST2	9956	broad.mit.edu	37	16	22926524	22926524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:22926524C>T	uc002dli.2	+	2	817	c.745C>T	c.(745-747)CGC>TGC	p.R249C	HS3ST2_uc002dlj.2_RNA	NM_006043	NP_006034	Q9Y278	HS3S2_HUMAN	heparan sulfate D-glucosaminyl	249	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(48;0.0299)		GAACGCCATCCGCATCGGCAT	0.617													7	101					0	0	1	0	0
USP31	57478	broad.mit.edu	37	16	23080094	23080094	+	Missense_Mutation	SNP	G	A	A	rs143964057	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:23080094G>A	uc002dll.2	-	16	3332	c.3332C>T	c.(3331-3333)TCG>TTG	p.S1111L	USP31_uc002dlk.2_Missense_Mutation_p.S383L|USP31_uc010vca.1_Missense_Mutation_p.S414L|USP31_uc010bxm.2_Missense_Mutation_p.S399L	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	1111	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		CTTCTGTGGCGAAGGAGATGA	0.587													8	148					0	0	1	0	0
USP31	57478	broad.mit.edu	37	16	23080169	23080169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:23080169C>T	uc002dll.2	-	16	3257	c.3257G>A	c.(3256-3258)CGG>CAG	p.R1086Q	USP31_uc002dlk.2_Missense_Mutation_p.R358Q|USP31_uc010vca.1_Missense_Mutation_p.R389Q|USP31_uc010bxm.2_Missense_Mutation_p.R374Q	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	1086	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		GGATGAATGCCGTCCACTGCC	0.547													11	101					0	0	1	0	0
SCNN1B	6338	broad.mit.edu	37	16	23379274	23379274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:23379274G>A	uc002dln.2	+	5	1050	c.874G>A	c.(874-876)GAA>AAA	p.E292K		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	292	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	CCCTGGAACTGAATTCGGTGA	0.517													7	94					0	0	1	0	0
SLC5A11	115584	broad.mit.edu	37	16	24881283	24881283	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:24881283C>T	uc002dmu.2	+	4	501	c.269C>T	c.(268-270)TCA>TTA	p.S90L	SLC5A11_uc002dms.2_Missense_Mutation_p.S26L|SLC5A11_uc010vcd.1_Missense_Mutation_p.S90L|SLC5A11_uc002dmt.2_Missense_Mutation_p.S26L|SLC5A11_uc010vce.1_Intron|SLC5A11_uc010bxt.2_Missense_Mutation_p.S26L	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	90	Extracellular (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		CTGGCAGGGTCAGGTGCTGCT	0.468													6	62					0	0	1	0	0
ARHGAP17	55114	broad.mit.edu	37	16	24955154	24955154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:24955154G>A	uc002dnb.2	-	15	1364	c.1271C>T	c.(1270-1272)TCC>TTC	p.S424F	ARHGAP17_uc002dna.2_Missense_Mutation_p.S151F|ARHGAP17_uc002dnc.2_Missense_Mutation_p.S424F|ARHGAP17_uc010vcf.1_Missense_Mutation_p.S245F	NM_001006634	NP_001006635	Q68EM7	RHG17_HUMAN	nadrin isoform 1	424	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|tight junction	GTPase activator activity|SH3 domain binding				0				GBM - Glioblastoma multiforme(48;0.0407)		CACATGGACGGATGTGGCTGC	0.448													5	70					0	0	1	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25258227	25258227	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:25258227G>A	uc002dod.3	-	5	1697	c.1290C>T	c.(1288-1290)GCC>GCT	p.A430A	ZKSCAN2_uc010vcl.1_Silent_p.A226A|ZKSCAN2_uc002doe.2_Silent_p.A430A	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	430					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		ACGGAGCACGGGCTGCAGGGT	0.498													5	47					0	0	1	0	0
IL21R	50615	broad.mit.edu	37	16	27459905	27459905	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:27459905G>A	uc002doq.1	+	9	1151	c.918G>A	c.(916-918)TGG>TGA	p.W306*	IL21R_uc002dor.1_Nonsense_Mutation_p.W306*|IL21R_uc002dos.1_Nonsense_Mutation_p.W306*|uc002dot.2_RNA	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	306	Cytoplasmic (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity	p.W306C(1)		ovary(2)|lung(1)|breast(1)	4						TGGGACCCTGGAGCCCAGAGG	0.607			T	BCL6	NHL								5	19					0	0	1	0	0
GTF3C1	2975	broad.mit.edu	37	16	27475768	27475769	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:27475768_27475769AG>GA	uc002dov.1	-	34	5784_5785	c.5744_5745CT>TC	c.(5743-5745)GCT>GTC	p.A1915V	GTF3C1_uc002dou.2_Missense_Mutation_p.A1915V	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1915						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						TGTCTTCAAGAGCTGGGGGTGG	0.653													14	125					0	0	1	0	0
GTF3C1	2975	broad.mit.edu	37	16	27497395	27497395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:27497395G>A	uc002dov.1	-	24	3821	c.3781C>T	c.(3781-3783)CTT>TTT	p.L1261F	GTF3C1_uc002dou.2_Missense_Mutation_p.L1261F	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1261						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						GTGACACGAAGCCGCGTCATC	0.572													11	161					0	0	1	0	0
XPO6	23214	broad.mit.edu	37	16	28128716	28128716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:28128716G>A	uc002dpa.1	-	15	2428	c.1927C>T	c.(1927-1929)CAC>TAC	p.H643Y	XPO6_uc002dpb.1_Missense_Mutation_p.H629Y|XPO6_uc010vcp.1_Missense_Mutation_p.H643Y	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	643					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						TTCTGCCGGTGAACTTCACTG	0.488													7	77					0	0	1	0	0
XPO6	23214	broad.mit.edu	37	16	28167666	28167666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:28167666G>A	uc002dpa.1	-	7	1327	c.826C>T	c.(826-828)CAC>TAC	p.H276Y	XPO6_uc002dpb.1_Missense_Mutation_p.H262Y|XPO6_uc010vcp.1_Missense_Mutation_p.H276Y	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	276					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						CGTGCAAAGTGGAAGATGGTG	0.572													7	53					0	0	1	0	0
SBK1	388228	broad.mit.edu	37	16	28331756	28331756	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:28331756C>T	uc002dpd.2	+	4	1578	c.789C>T	c.(787-789)TTC>TTT	p.F263F		NM_001024401	NP_001019572	Q52WX2	SBK1_HUMAN	SH3-binding kinase 1	263	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|kidney(1)	2						ACGCCTTCTTCGAGGAGTTCG	0.711													5	39					0	0	1	0	0
CLN3	1201	broad.mit.edu	37	16	28497722	28497722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:28497722G>A	uc002dpo.2	-	8	946	c.623C>T	c.(622-624)TCC>TTC	p.S208F	uc010vct.1_Intron|CLN3_uc002dpl.2_Missense_Mutation_p.S130F|CLN3_uc010vcu.1_Missense_Mutation_p.S108F|CLN3_uc002dpn.2_Intron|CLN3_uc002dpm.2_Missense_Mutation_p.S154F|CLN3_uc010vcv.1_Missense_Mutation_p.S184F|CLN3_uc010byd.2_Missense_Mutation_p.S208F|CLN3_uc002dpp.2_Missense_Mutation_p.S208F|CLN3_uc002dpt.1_Missense_Mutation_p.S108F|CLN3_uc002dpq.1_Intron|CLN3_uc010bye.1_Missense_Mutation_p.S208F|CLN3_uc002dpr.1_Intron|CLN3_uc010byf.1_Intron|CLN3_uc002dps.1_Intron|CLN3_uc002dpu.1_Intron|CLN3_uc002dpw.1_Intron|CLN3_uc010vcw.1_Missense_Mutation_p.S154F|CLN3_uc002dqa.2_Missense_Mutation_p.S259F|CLN3_uc010vcx.1_Missense_Mutation_p.S108F|CLN3_uc002dpx.1_Intron|CLN3_uc002dpy.1_Intron|CLN3_uc002dpz.1_RNA	NM_000086	NP_000077	Q13286	CLN3_HUMAN	ceroid-lipofuscinosis, neuronal 3	208					amyloid precursor protein catabolic process|arginine transport|associative learning|autophagic vacuole fusion|cell death|cellular amino acid metabolic process|cytosolic calcium ion homeostasis|galactosylceramide metabolic process|globoside metabolic process|glucosylceramide metabolic process|ionotropic glutamate receptor signaling pathway|lysosomal lumen acidification|lysosomal lumen pH elevation|negative regulation of catalytic activity|negative regulation of macroautophagy|negative regulation of neuron apoptosis|negative regulation of proteolysis|neuromuscular process controlling balance|neurotransmitter metabolic process|protein catabolic process|protein folding|protein processing|receptor-mediated endocytosis|regulation of action potential|sphingomyelin metabolic process|vacuolar transport	autophagic vacuole|caveola|cytosol|early endosome|Golgi membrane|Golgi stack|integral to endoplasmic reticulum membrane|late endosome|lysosomal membrane|membrane fraction|mitochondrion|neuron projection|nucleus|synaptic vesicle|trans-Golgi network	unfolded protein binding				0						CTGCTGAGGGGAGAGGCCGGC	0.682													8	48					0	0	1	0	0
ATP2A1	487	broad.mit.edu	37	16	28914725	28914725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:28914725G>A	uc002dro.1	+	21	3128	c.2944G>A	c.(2944-2946)GAA>AAA	p.E982K	uc010vct.1_Intron|ATP2A1_uc002drn.1_Missense_Mutation_p.E982K|ATP2A1_uc002drp.1_Missense_Mutation_p.E857K	NM_173201	NP_775293	O14983	AT2A1_HUMAN	ATPase, Ca++ transporting, fast twitch 1 isoform	982	Helical; Name=10; (By similarity).				apoptosis in response to endoplasmic reticulum stress|apoptotic mitochondrial changes|ATP biosynthetic process|calcium ion import|elevation of endoplasmic reticulum calcium ion concentration|elevation of mitochondrial calcium ion concentration|maintenance of mitochondrion location|negative regulation of striated muscle contraction|platelet activation|positive regulation of fast-twitch skeletal muscle fiber contraction|reduction of endoplasmic reticulum calcium ion concentration|relaxation of skeletal muscle|response to endoplasmic reticulum stress	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|H zone|I band|microsome|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum|sarcoplasmic reticulum membrane	ATP binding|ATP binding|calcium ion binding|calcium ion binding|calcium-transporting ATPase activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TGGGCTCGACGAAATCCTCAA	0.577													15	53					0	0	1	0	0
QPRT	23475	broad.mit.edu	37	16	29706143	29706143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:29706143C>T	uc002dto.2	+	2	250	c.172C>T	c.(172-174)CCT>TCT	p.P58S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|QPRT_uc010vdu.1_Intron	NM_014298	NP_055113	Q15274	NADC_HUMAN	quinolinate phosphoribosyltransferase	58					protein oligomerization|quinolinate catabolic process|water-soluble vitamin metabolic process	cytosol	nicotinate-nucleotide diphosphorylase (carboxylating) activity|protein homodimerization activity				0					Niacin(DB00627)	GGCAGGGCAGCCTTTCTTCGA	0.647													8	113					0	0	1	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29891227	29891227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:29891227G>A	uc002duq.3	-	9	1771	c.1531C>T	c.(1531-1533)CCC>TCC	p.P511S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Missense_Mutation_p.P441S|SEZ6L2_uc002dur.3_Missense_Mutation_p.P441S|SEZ6L2_uc002dus.3_Missense_Mutation_p.P397S|SEZ6L2_uc010vec.1_Missense_Mutation_p.P511S|SEZ6L2_uc010ved.1_Missense_Mutation_p.P467S	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	511	Sushi 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						GGTTCTGTGGGATCCACACAT	0.627													30	164					0	0	1	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29896970	29896970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:29896970G>A	uc002duq.3	-	8	1549	c.1309C>T	c.(1309-1311)CTC>TTC	p.L437F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Missense_Mutation_p.L367F|SEZ6L2_uc002dur.3_Missense_Mutation_p.L367F|SEZ6L2_uc002dus.3_Missense_Mutation_p.L323F|SEZ6L2_uc010vec.1_Missense_Mutation_p.L437F|SEZ6L2_uc010ved.1_Missense_Mutation_p.L393F	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	437	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						TCCACGTAGAGGGACTGGGCG	0.607													8	79					0	0	1	0	0
ASPHD1	253982	broad.mit.edu	37	16	29912638	29912638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:29912638C>T	uc002dut.2	+	1	492	c.346C>T	c.(346-348)CGT>TGT	p.R116C	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_5'Flank|SEZ6L2_uc002dur.3_5'Flank|SEZ6L2_uc002duq.3_5'Flank|SEZ6L2_uc002dus.3_5'Flank|SEZ6L2_uc010vec.1_5'Flank|SEZ6L2_uc010ved.1_5'Flank|ASPHD1_uc002duu.3_RNA|ASPHD1_uc010bzi.2_RNA	NM_181718	NP_859069	Q5U4P2	ASPH1_HUMAN	aspartate beta-hydroxylase domain containing 1	116	Gly-rich.|Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity				0						TGGGGGTGTTCGTGGTGGGCC	0.697													5	65					0	0	1	0	0
ASPHD1	253982	broad.mit.edu	37	16	29913002	29913002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:29913002C>T	uc002dut.2	+	1	856	c.710C>T	c.(709-711)CCG>CTG	p.P237L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_5'Flank|SEZ6L2_uc002dur.3_5'Flank|SEZ6L2_uc002duq.3_5'Flank|SEZ6L2_uc002dus.3_5'Flank|SEZ6L2_uc010vec.1_5'Flank|SEZ6L2_uc010ved.1_5'Flank|ASPHD1_uc002duu.3_RNA|ASPHD1_uc010bzi.2_RNA	NM_181718	NP_859069	Q5U4P2	ASPH1_HUMAN	aspartate beta-hydroxylase domain containing 1	237	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity				0						ACTACCCCTCCGCCTCGGGGC	0.697													7	65					0	0	1	0	0
ASPHD1	253982	broad.mit.edu	37	16	29913023	29913023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:29913023C>T	uc002dut.2	+	1	877	c.731C>T	c.(730-732)CCT>CTT	p.P244L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_5'Flank|SEZ6L2_uc002dur.3_5'Flank|SEZ6L2_uc002duq.3_5'Flank|SEZ6L2_uc002dus.3_5'Flank|SEZ6L2_uc010vec.1_5'Flank|SEZ6L2_uc010ved.1_5'Flank|ASPHD1_uc002duu.3_RNA|ASPHD1_uc010bzi.2_RNA	NM_181718	NP_859069	Q5U4P2	ASPH1_HUMAN	aspartate beta-hydroxylase domain containing 1	244	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity				0						TGGTCCCCACCTCTGGCCCCC	0.692													10	42					0	0	1	0	0
PPP4C	5531	broad.mit.edu	37	16	30094725	30094725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:30094725C>T	uc002dwe.2	+	6	458	c.314C>T	c.(313-315)CCT>CTT	p.P105L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|PPP4C_uc002dwf.2_Missense_Mutation_p.P105L|PPP4C_uc002dwg.2_RNA|PPP4C_uc002dwh.2_Missense_Mutation_p.P26L	NM_002720	NP_002711	P60510	PP4C_HUMAN	protein phosphatase 4, catalytic subunit	105					microtubule cytoskeleton organization|regulation of double-strand break repair via homologous recombination	centrosome|nucleus	metal ion binding|NF-kappaB-inducing kinase activity|protein binding|protein serine/threonine phosphatase activity			skin(1)	1						GTTCGCTATCCTGATCGCATC	0.622													6	94					0	0	1	0	0
ITGAL	3683	broad.mit.edu	37	16	30490424	30490424	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:30490424G>A	uc002dyi.3	+	5	516	c.340G>A	c.(340-342)GGG>AGG	p.G114R	ITGAL_uc010veu.1_RNA|ITGAL_uc002dyj.3_Intron|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	114	FG-GAP 2.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	CTGTGACCCTGGGCTGTCTCG	0.517													4	60					0	0	1	0	0
ITGAL	3683	broad.mit.edu	37	16	30490433	30490433	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:30490433C>T	uc002dyi.3	+	5	525	c.349C>T	c.(349-351)CGA>TGA	p.R117*	ITGAL_uc010veu.1_RNA|ITGAL_uc002dyj.3_Intron|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	117	FG-GAP 2.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	TGGGCTGTCTCGAACGTGTGA	0.517													14	51					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30736210	30736210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:30736210C>T	uc002dze.1	+	25	5850	c.5465C>T	c.(5464-5466)TCC>TTC	p.S1822F	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.S1617F|SRCAP_uc010bzz.1_Missense_Mutation_p.S1392F	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1822	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CAGGCATCTTCCCTTGTGGTT	0.328													9	53					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30745866	30745866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:30745866C>T	uc002dze.1	+	31	7044	c.6659C>T	c.(6658-6660)TCA>TTA	p.S2220L	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.S2015L	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2220					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CCTTCTAGCTCATCCGTGCCC	0.498													13	134					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30750002	30750002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:30750002C>T	uc002dze.1	+	34	9026	c.8641C>T	c.(8641-8643)CCC>TCC	p.P2881S	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P2676S	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2881	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GGATGAGGCACCCTCATCCAC	0.582													5	21					0	0	1	0	0
FUS	2521	broad.mit.edu	37	16	31200472	31200472	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:31200472C>T	uc002ebf.2	+	9	944	c.861C>T	c.(859-861)ATC>ATT	p.I287I	FUS_uc002ebh.2_Silent_p.I286I|FUS_uc002ebg.2_Silent_p.I82I|FUS_uc002ebi.2_Silent_p.I288I|FUS_uc002ebj.2_Silent_p.I83I|FUS_uc010caj.1_Intron	NM_004960	NP_004951	P35637	FUS_HUMAN	fusion (involved in t(12;16) in malignant	287	RRM.				cell death|nuclear mRNA splicing, via spliceosome	nucleoplasm	DNA binding|nucleotide binding|protein binding|RNA binding|zinc ion binding		FUS/DDIT3(623)|FUS/ERG(163)|FUS/CREB3L2(158)|FUS/CREB3L1(6)|FUS/ATF1(4)|FUS/FEV(2)	soft_tissue(791)|haematopoietic_and_lymphoid_tissue(153)|bone(12)|breast(2)	958		Renal(780;0.000219)|Breast(268;0.00957)|Hepatocellular(780;0.121)		GBM - Glioblastoma multiforme(240;2.31e-05)|Kidney(780;0.000209)		ACAACACCATCTTTGTGCAAG	0.393			T	DDIT3|ERG|FEV|ATF1|CREB3L2|CREB3L1	liposarcoma|AML|Ewing sarcoma|angiomatoid fibrous histiocytoma|fibromyxoid sarcoma								14	99					0	0	1	0	0
ITGAD	3681	broad.mit.edu	37	16	31418929	31418929	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:31418929G>A	uc002ebv.1	+	8	847	c.798G>A	c.(796-798)CTG>CTA	p.L266L	ITGAD_uc010vfl.1_Silent_p.L266L|ITGAD_uc010cap.1_Silent_p.L266L|ITGAD_uc002ebw.1_Silent_p.L77L	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	266	Extracellular (Potential).|VWFA.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						AAGACCCCCTGGAATACAGTG	0.547													7	63					0	0	1	0	0
SLC5A2	6524	broad.mit.edu	37	16	31498897	31498897	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:31498897G>A	uc002ecf.3	+	7	721	c.702G>A	c.(700-702)CTG>CTA	p.L234L	SLC5A2_uc010car.2_RNA|C16orf58_uc002ecg.2_RNA	NM_003041	NP_003032	P31639	SC5A2_HUMAN	solute carrier family 5 (sodium/glucose	234	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane	low-affinity glucose:sodium symporter activity			ovary(1)	1						ACAAATACCTGGGAGCAGCGA	0.647													9	81					0	0	1	0	0
C16orf58	64755	broad.mit.edu	37	16	31510727	31510727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:31510727G>A	uc002eci.1	-	5	508	c.496C>T	c.(496-498)CTT>TTT	p.L166F	C16orf58_uc010vfq.1_Missense_Mutation_p.L24F	NM_022744	NP_073581	Q96GQ5	CP058_HUMAN	hypothetical protein LOC64755	166						integral to membrane				ovary(1)|breast(1)	2						TCCGCAAAAAGCCTGGGGAGG	0.547													7	57					0	0	1	0	0
AHSP	51327	broad.mit.edu	37	16	31539475	31539475	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:31539475G>A	uc002ecj.2	+	2	100	c.15G>A	c.(13-15)AAG>AAA	p.K5K		NM_016633	NP_057717	Q9NZD4	AHSP_HUMAN	erythroid associated factor	5					hemoglobin metabolic process|hemopoiesis|protein folding|protein stabilization	hemoglobin complex	hemoglobin binding|unfolded protein binding				0						CTCTTCTTAAGGCCAATAAGG	0.478													7	67					0	0	1	0	0
MYLK3	91807	broad.mit.edu	37	16	46781980	46781980	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:46781980G>A	uc002eei.3	-	1	242	c.126C>T	c.(124-126)TTC>TTT	p.F42F	MYLK3_uc010vge.1_Intron	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	42					cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				CATCTTCTTGGAAGTGCAGGA	0.622													6	96					0	0	1	0	0
PHKB	5257	broad.mit.edu	37	16	47630437	47630437	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:47630437T>A	uc002eev.3	+	13	1410	c.1358T>A	c.(1357-1359)CTC>CAC	p.L453H	PHKB_uc002eeu.3_Missense_Mutation_p.L446H	NM_000293	NP_000284	Q93100	KPBB_HUMAN	phosphorylase kinase, beta isoform a	453					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity			ovary(1)|large_intestine(1)|breast(1)	3		all_cancers(37;0.00447)|all_lung(18;0.00616)|Lung NSC(13;0.0418)|Breast(268;0.203)				ATCGCAAAACTCCTGGGTAAG	0.378													6	67					0	0	1	0	0
PHKB	5257	broad.mit.edu	37	16	47703278	47703278	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:47703278C>T	uc002eev.3	+	26	2632	c.2580C>T	c.(2578-2580)ATC>ATT	p.I860I	PHKB_uc002eeu.3_Silent_p.I853I|PHKB_uc002eew.3_Silent_p.I101I	NM_000293	NP_000284	Q93100	KPBB_HUMAN	phosphorylase kinase, beta isoform a	860					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity			ovary(1)|large_intestine(1)|breast(1)	3		all_cancers(37;0.00447)|all_lung(18;0.00616)|Lung NSC(13;0.0418)|Breast(268;0.203)				TTGGCTGGATCATCTCCAATA	0.413													6	34					0	0	1	0	0
ABCC12	94160	broad.mit.edu	37	16	48138108	48138108	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:48138108G>A	uc002efc.1	-	20	3191	c.2845C>T	c.(2845-2847)CCT>TCT	p.P949S	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_Intron|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	949	ABC transmembrane type-1 2.|Helical; (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				AGGACAGCAGGAAACACAGCA	0.478													6	39					0	0	1	0	0
ABCC12	94160	broad.mit.edu	37	16	48142402	48142402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:48142402C>T	uc002efc.1	-	17	2666	c.2320G>A	c.(2320-2322)GAA>AAA	p.E774K	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	774						integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				ACGGTTCCTTCCTGGGGGGAT	0.473													6	74					0	0	1	0	0
ABCC11	85320	broad.mit.edu	37	16	48210901	48210901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:48210901G>A	uc002eff.1	-	24	3822	c.3472C>T	c.(3472-3474)CTT>TTT	p.L1158F	ABCC11_uc002efg.1_Missense_Mutation_p.L1158F|ABCC11_uc002efh.1_Missense_Mutation_p.L1158F|ABCC11_uc010cbg.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	1158	ABC transporter 2.|Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				ATGCCGTGAAGCACGGTGGGT	0.572									Cerumen_Type				5	17					0	0	1	0	0
ABCC11	85320	broad.mit.edu	37	16	48258241	48258241	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:48258241G>A	uc002eff.1	-	4	845	c.495C>T	c.(493-495)TTC>TTT	p.F165F	ABCC11_uc002efg.1_Silent_p.F165F|ABCC11_uc002efh.1_Silent_p.F165F|ABCC11_uc010vgl.1_Silent_p.F165F	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	165	ABC transmembrane type-1 1.|Helical; (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				GAAGTGCATCGAAAATCAACC	0.512									Cerumen_Type				6	39					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49671056	49671056	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:49671056C>T	uc002efs.2	-	5	2305	c.2007G>A	c.(2005-2007)GAG>GAA	p.E669E	ZNF423_uc010vgn.1_Silent_p.E552E	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	669	C2H2-type 15.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				AGTCAAAGTCCTCTTTGCACT	0.557													4	45					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49671596	49671596	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:49671596G>A	uc002efs.2	-	5	1765	c.1467C>T	c.(1465-1467)TTC>TTT	p.F489F	ZNF423_uc010vgn.1_Silent_p.F372F	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	489	C2H2-type 11.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				TGATGTCGGCGAACATCTCGG	0.557													10	55					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49671746	49671746	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:49671746C>T	uc002efs.2	-	5	1615	c.1317G>A	c.(1315-1317)CAG>CAA	p.Q439Q	ZNF423_uc010vgn.1_Silent_p.Q322Q	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	439					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				ATGTGTGGCTCTGCTGGGGCT	0.572													5	65					0	0	1	0	0
NOD2	64127	broad.mit.edu	37	16	50759401	50759401	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:50759401C>T	uc002egm.1	+	10	2989	c.2884C>T	c.(2884-2886)CTG>TTG	p.L962L	NOD2_uc010vgq.1_Silent_p.L7L	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	962	LRR 7.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				TCTCACCAGCCTGGAGGAGAA	0.413													7	61					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51173425	51173425	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:51173425G>A	uc010vgs.1	-	2	2739	c.2708C>T	c.(2707-2709)TCC>TTC	p.S903F	SALL1_uc010vgr.1_Missense_Mutation_p.S806F|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	903					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			ACCCACTGAGGATGAATCATT	0.562													4	45					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174515	51174515	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:51174515T>C	uc010vgs.1	-	2	1649	c.1618A>G	c.(1618-1620)AGC>GGC	p.S540G	SALL1_uc010vgr.1_Missense_Mutation_p.S443G|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	540					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TCTAGCCAGCTGGTGACTGGC	0.562													9	74					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51174684	51174684	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:51174684C>T	uc010vgs.1	-	2	1480	c.1449G>A	c.(1447-1449)GGG>GGA	p.G483G	SALL1_uc010vgr.1_Silent_p.G386G|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	483	C2H2-type 2.				adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AGAACCTGTTCCCGCAGATGT	0.522													13	81					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51175596	51175596	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:51175596G>A	uc010vgs.1	-	2	568	c.537C>T	c.(535-537)CTC>CTT	p.L179L	SALL1_uc010vgr.1_Silent_p.L82L|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	179					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TCAGGTCCCCGAGTTGAGGTA	0.448													11	60					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51175928	51175928	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:51175928G>A	uc010vgs.1	-	2	236	c.205C>T	c.(205-207)CAA>TAA	p.Q69*	SALL1_uc010vgr.1_5'UTR|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	69					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AAAACTAATTGATTTTTAGTA	0.463													5	106					0	0	1	0	0
TOX3	27324	broad.mit.edu	37	16	52497915	52497915	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:52497915G>A	uc002egw.2	-	3	510	c.339C>T	c.(337-339)CTC>CTT	p.L113L	TOX3_uc010vgt.1_Silent_p.L108L|TOX3_uc010vgu.1_Silent_p.L113L	NM_001080430	NP_001073899	O15405	TOX3_HUMAN	TOX high mobility group box family member 3	113					apoptosis|negative regulation of neuron apoptosis|positive regulation of anti-apoptosis|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|estrogen response element binding|phosphoprotein binding|protein homodimerization activity				0						TAATGGAAGGGAGGTCCAGGC	0.478													7	42					0	0	1	0	0
SLC6A2	6530	broad.mit.edu	37	16	55719148	55719148	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:55719148C>T	uc002eif.2	+	5	849	c.738C>T	c.(736-738)ATC>ATT	p.I246I	SLC6A2_uc010ccd.2_Silent_p.I246I|SLC6A2_uc002eig.2_Silent_p.I246I|SLC6A2_uc002eih.2_Silent_p.I246I|SLC6A2_uc002eii.2_Silent_p.I141I|SLC6A2_uc002eij.2_Silent_p.I5I	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	246	Helical; Name=4; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	TCGTCGTCATCGTCTTGTATT	0.527													6	70					0	0	1	0	0
CES1	1066	broad.mit.edu	37	16	55853500	55853500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:55853500G>A	uc002eim.2	-	7	958	c.850C>T	c.(850-852)CAC>TAC	p.H284Y	CES1_uc010ccf.2_5'Flank|CES1_uc002eil.2_Missense_Mutation_p.H285Y|CES1_uc002ein.2_Missense_Mutation_p.H284Y	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	284					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	CGCAGGCAGTGAACCATGACA	0.517													5	59					0	0	1	0	0
CES1	1066	broad.mit.edu	37	16	55862727	55862727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:55862727G>A	uc002eim.2	-	2	317	c.209C>T	c.(208-210)CCT>CTT	p.P70L	CES1_uc002eil.2_Missense_Mutation_p.P71L|CES1_uc002ein.2_Missense_Mutation_p.P70L	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	70					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	TGGTTCTGCAGGCTGCGGTGG	0.527													6	87					0	0	1	0	0
OGFOD1	55239	broad.mit.edu	37	16	56487266	56487266	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:56487266A>T	uc002ejb.2	+	2	347	c.246A>T	c.(244-246)GAA>GAT	p.E82D	OGFOD1_uc002ejc.2_5'UTR|NUDT21_uc002eja.2_5'Flank	NM_018233	NP_060703	Q8N543	OGFD1_HUMAN	2-oxoglutarate and iron-dependent oxygenase	82							iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			skin(1)	1					Vitamin C(DB00126)	TTCAGAAGGAACTGATGAACT	0.408													4	55					0	0	1	0	0
BBS2	583	broad.mit.edu	37	16	56535370	56535370	+	Missense_Mutation	SNP	G	A	A	rs143607562		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:56535370G>A	uc002ejd.2	-	10	1354	c.1120C>T	c.(1120-1122)CGG>TGG	p.R374W	BBS2_uc010ccg.2_3'UTR	NM_031885	NP_114091	Q9BXC9	BBS2_HUMAN	Bardet-Biedl syndrome 2 protein	374					adult behavior|brain morphogenesis|cerebral cortex development|cilium morphogenesis|fat cell differentiation|hippocampus development|melanosome transport|negative regulation of multicellular organism growth|photoreceptor cell maintenance|protein localization to organelle|regulation of cilium beat frequency involved in ciliary motility|sperm axoneme assembly|striatum development	BBSome|cilium membrane|microtubule basal body|motile cilium	protein binding			ovary(1)	1						ATTATGCCCCGATGCCCATCA	0.498									Bardet-Biedl_syndrome				9	74					0	0	1	0	0
SLC12A3	6559	broad.mit.edu	37	16	56917964	56917964	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:56917964G>A	uc010ccm.2	+	14	1702	c.1673G>A	c.(1672-1674)TGG>TAG	p.W558*	SLC12A3_uc002ekd.3_Nonsense_Mutation_p.W558*|SLC12A3_uc010ccn.2_Nonsense_Mutation_p.W557*	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	558	Cytoplasmic (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	GGCCCAGGGTGGAGACCTTCA	0.607													7	46					0	0	1	0	0
SLC12A3	6559	broad.mit.edu	37	16	56928468	56928468	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:56928468C>T	uc010ccm.2	+	22	2576	c.2547C>T	c.(2545-2547)CTC>CTT	p.L849L	SLC12A3_uc002ekd.3_Silent_p.L858L|SLC12A3_uc010ccn.2_Silent_p.L857L	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	849	Cytoplasmic (Potential).		L -> H (in GS).		sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	TTCCCTATCTCCTTGGCCGCA	0.502													6	29					0	0	1	0	0
HERPUD1	9709	broad.mit.edu	37	16	56977170	56977170	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:56977170C>T	uc002eke.1	+	8	1553	c.1144C>T	c.(1144-1146)CTT>TTT	p.L382F	HERPUD1_uc002ekf.1_Missense_Mutation_p.L381F|HERPUD1_uc002ekg.1_Missense_Mutation_p.L357F|HERPUD1_uc010cco.1_3'UTR|HERPUD1_uc010ccp.1_Missense_Mutation_p.L284F|HERPUD1_uc002ekh.1_Missense_Mutation_p.L200F	NM_014685	NP_055500	Q15011	HERP1_HUMAN	homocysteine-inducible, endoplasmic reticulum	382	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	protein binding				0						TGCCTCTCTTCTTCCAGAAGG	0.532			T	ERG	prostate								14	174					0	0	1	0	0
CETP	1071	broad.mit.edu	37	16	57003406	57003406	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:57003406G>A	uc002eki.2	+	3	399	c.342G>A	c.(340-342)CTG>CTA	p.L114L	CETP_uc002ekj.2_Silent_p.L114L	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	114					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						AGGGGACCCTGAAGTATGGCT	0.582													8	111					0	0	1	0	0
CETP	1071	broad.mit.edu	37	16	57007401	57007402	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:57007401_57007402CC>TT	uc002eki.2	+	9	966_967	c.909_910CC>TT	c.(907-912)AGCCTG>AGTTTG	p.303_304SL>SL	CETP_uc002ekj.2_Intron	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	303_304					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						TCATGCTCAGCCTGATGGGAGA	0.604													3	43					0	0	1	0	0
CETP	1071	broad.mit.edu	37	16	57012110	57012110	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:57012110G>A	uc002eki.2	+	11	1146	c.1089G>A	c.(1087-1089)GTG>GTA	p.V363V	CETP_uc002ekj.2_Silent_p.V303V	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	363					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding	p.V363M(1)		central_nervous_system(1)|skin(1)	2						CAGTGATGGTGAAATTCCTCT	0.557													11	125					0	0	1	0	0
NLRC5	84166	broad.mit.edu	37	16	57062238	57062239	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:57062238_57062239CC>TT	uc002ekk.1	+	8	2409_2410	c.2184_2185CC>TT	c.(2182-2187)GCCCGA>GCTTGA	p.R729*	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Intron|NLRC5_uc002ekl.2_Nonsense_Mutation_p.R534*|NLRC5_uc002ekm.2_Nonsense_Mutation_p.R534*|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	729	LRR 2.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				AAATCACTGCCCGAGGCATCAG	0.55													10	76					0	0	1	0	0
PLLP	51090	broad.mit.edu	37	16	57295928	57295928	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:57295928G>A	uc002elg.1	-	2	318	c.190C>T	c.(190-192)CCG>TCG	p.P64S		NM_015993	NP_057077	Q9Y342	PLLP_HUMAN	plasmolipin	64	Extracellular (Potential).|MARVEL.					integral to membrane	ion channel activity				0						CCATAGGCCGGATACAGGTGG	0.562													4	51					0	0	1	0	0
CIAPIN1	57019	broad.mit.edu	37	16	57473199	57473199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:57473199G>A	uc002ell.1	-	3	376	c.205C>T	c.(205-207)CCA>TCA	p.P69S	CIAPIN1_uc002elk.1_RNA|CIAPIN1_uc002elm.1_Missense_Mutation_p.P56S|CIAPIN1_uc002eln.1_Missense_Mutation_p.P69S|CIAPIN1_uc010cda.1_Missense_Mutation_p.P69S|CIAPIN1_uc002elo.1_Missense_Mutation_p.P69S|CIAPIN1_uc010vhm.1_Missense_Mutation_p.P69S	NM_020313	NP_064709	Q6FI81	CPIN1_HUMAN	cytokine induced apoptosis inhibitor 1	69					anti-apoptosis|apoptosis	cytoplasm|nucleolus					0						GTGCTTCCTGGGACTAAACCT	0.483													23	148					0	0	1	0	0
CCDC135	84229	broad.mit.edu	37	16	57752293	57752293	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:57752293G>A	uc002emi.2	+	8	1201	c.1112G>A	c.(1111-1113)TGG>TAG	p.W371*	CCDC135_uc002emj.2_Nonsense_Mutation_p.W371*|CCDC135_uc002emk.2_Nonsense_Mutation_p.W306*	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	371						cytoplasm				central_nervous_system(1)	1						CCTGTGAGATGGGAGTACATG	0.527													11	133					0	0	1	0	0
CCDC135	84229	broad.mit.edu	37	16	57756673	57756673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:57756673G>A	uc002emi.2	+	10	1417	c.1328G>A	c.(1327-1329)AGG>AAG	p.R443K	CCDC135_uc002emj.2_Missense_Mutation_p.R443K|CCDC135_uc002emk.2_Missense_Mutation_p.R378K	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	443						cytoplasm				central_nervous_system(1)	1						CAGTACAAGAGGGCAAAGCTG	0.557													7	65					0	0	1	0	0
CCDC135	84229	broad.mit.edu	37	16	57756955	57756955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:57756955G>A	uc002emi.2	+	11	1539	c.1450G>A	c.(1450-1452)GAA>AAA	p.E484K	CCDC135_uc002emj.2_Missense_Mutation_p.E484K|CCDC135_uc002emk.2_Missense_Mutation_p.E419K	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	484						cytoplasm				central_nervous_system(1)	1						CCAGAACCGGGAAGACATGCT	0.582													10	115					0	0	1	0	0
CNGB1	1258	broad.mit.edu	37	16	57951298	57951298	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:57951298G>A	uc002emt.2	-	21	2105	c.2040C>T	c.(2038-2040)TTC>TTT	p.F680F	CNGB1_uc010cdh.2_Silent_p.F674F	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	680	Extracellular (Potential).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						TCTGGTAGGGGAAGGCCCAGC	0.562													7	103					0	0	1	0	0
CNGB1	1258	broad.mit.edu	37	16	57992319	57992319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:57992319C>T	uc002emt.2	-	11	897	c.832G>A	c.(832-834)GAA>AAA	p.E278K	CNGB1_uc010cdh.2_Missense_Mutation_p.E272K|CNGB1_uc002emu.2_Missense_Mutation_p.E278K	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	278					sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						CTGACCTGTTCCCCTATTTTC	0.617													8	54					0	0	1	0	0
CCDC113	29070	broad.mit.edu	37	16	58288049	58288049	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:58288049C>T	uc002ene.2	+	3	455	c.376C>T	c.(376-378)CTG>TTG	p.L126L	CCDC113_uc010vid.1_Intron	NM_014157	NP_054876	Q9H0I3	CC113_HUMAN	coiled-coil domain containing 113 isoform 1	126	Potential.					protein complex					0						GGAACGCGACCTGCAGCATCA	0.557													7	78					0	0	1	0	0
NDRG4	65009	broad.mit.edu	37	16	58541874	58541874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:58541874G>A	uc002eno.2	+	10	806	c.700G>A	c.(700-702)GGG>AGG	p.G234R	NDRG4_uc002enk.2_Missense_Mutation_p.G266R|NDRG4_uc002enm.2_Missense_Mutation_p.G286R|NDRG4_uc010vif.1_Missense_Mutation_p.G266R|NDRG4_uc010cdk.2_Missense_Mutation_p.G252R|NDRG4_uc010vig.1_Missense_Mutation_p.G264R|NDRG4_uc010vih.1_Missense_Mutation_p.G179R|NDRG4_uc010vii.1_Missense_Mutation_p.G252R|NDRG4_uc002enp.2_Missense_Mutation_p.G234R|NDRG4_uc002enq.1_Intron	NM_022910	NP_075061	Q9ULP0	NDRG4_HUMAN	NDRG family member 4 isoform 1	234					cell differentiation|cell growth|multicellular organismal development|response to stress	cytoplasm				skin(1)	1						GCTGGTGGTTGGGGATAATGC	0.667													5	79					0	0	1	0	0
CDH11	1009	broad.mit.edu	37	16	65006823	65006823	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:65006823G>A	uc002eoi.2	-	9	1808	c.1374C>T	c.(1372-1374)GTC>GTT	p.V458V	CDH11_uc010cdn.2_Intron|CDH11_uc002eoj.2_Silent_p.V458V|CDH11_uc010vin.1_Silent_p.V332V	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	458	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		CTGCTGCAAAGACAGTGATGT	0.378			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			4	32					0	0	1	0	0
CDH5	1003	broad.mit.edu	37	16	66420802	66420802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:66420802G>A	uc002eom.3	+	3	457	c.301G>A	c.(301-303)GAC>AAC	p.D101N	CDH5_uc002eon.1_Missense_Mutation_p.D101N	NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	101	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		AGAGACAGGAGACGTGTTCGC	0.517													3	30					0	0	1	0	0
RRAD	6236	broad.mit.edu	37	16	66957811	66957811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:66957811C>T	uc002eqn.2	-	3	534	c.382G>A	c.(382-384)GAT>AAT	p.D128N	RRAD_uc002eqo.2_Missense_Mutation_p.D128N	NM_001128850	NP_001122322	P55042	RAD_HUMAN	Ras-related associated with diabetes	128					small GTPase mediated signal transduction	plasma membrane	calmodulin binding|GTP binding|GTPase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0862)|Epithelial(162;0.198)		ATGGAGCGATCATAGGTGTGC	0.572													8	111					0	0	1	0	0
CES3	23491	broad.mit.edu	37	16	66997830	66997830	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:66997830C>T	uc002eqt.2	+	4	625	c.552C>T	c.(550-552)GGC>GGT	p.G184G	CES3_uc010cdz.2_Silent_p.G184G|CES3_uc010cea.2_RNA	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	carboxylesterase 3 precursor	184						endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			ovary(3)|central_nervous_system(2)	5		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		GGGTCCTTGGCTTCTTCAGGT	0.607													7	65					0	0	1	0	0
C16orf70	80262	broad.mit.edu	37	16	67168357	67168357	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:67168357C>T	uc002erc.2	+	9	732	c.648C>T	c.(646-648)CGC>CGT	p.R216R	C16orf70_uc002erd.2_Silent_p.R216R|C16orf70_uc002ere.1_3'UTR	NM_025187	NP_079463	Q9BSU1	CP070_HUMAN	lin-10	216										ovary(2)	2		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0017)|Epithelial(162;0.00655)|all cancers(182;0.0579)		TACGACTTCGCCTACTTGCTG	0.488													15	133					0	0	1	0	0
EXOC3L	283849	broad.mit.edu	37	16	67220542	67220542	+	Missense_Mutation	SNP	G	A	A	rs145228772		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:67220542G>A	uc002erx.1	-	8	1544	c.1303C>T	c.(1303-1305)CGT>TGT	p.R435C	KIAA0895L_uc002ert.2_5'Flank|KIAA0895L_uc002eru.2_5'Flank|EXOC3L_uc002erv.1_RNA|EXOC3L_uc002erw.1_Missense_Mutation_p.R86C|EXOC3L_uc002ery.1_Missense_Mutation_p.R337C|EXOC3L_uc010vje.1_Missense_Mutation_p.R332C	NM_178516	NP_848611	Q86VI1	EX3L1_HUMAN	exocyst complex component 3-like	435					exocytosis|peptide hormone secretion	exocyst|stored secretory granule|transport vesicle					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0021)|Epithelial(162;0.0073)|all cancers(182;0.0616)		CTGGCCACACGAATGTTCTCT	0.582													6	73					0	0	1	0	0
TSNAXIP1	55815	broad.mit.edu	37	16	67854835	67854835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:67854835G>A	uc002euj.2	+	3	473	c.79G>A	c.(79-81)GAC>AAC	p.D27N	TSNAXIP1_uc010cep.2_5'UTR|TSNAXIP1_uc010vjz.1_Intron|TSNAXIP1_uc002euf.3_Intron|TSNAXIP1_uc010vka.1_Missense_Mutation_p.D81N|TSNAXIP1_uc010vkb.1_Intron|TSNAXIP1_uc002eug.3_Intron|TSNAXIP1_uc002euh.3_Intron|TSNAXIP1_uc002eui.3_Intron|TSNAXIP1_uc002euk.2_5'Flank	NM_018430	NP_060900	Q2TAA8	TXIP1_HUMAN	translin-associated factor X interacting protein	27					cell differentiation|multicellular organismal development|spermatogenesis	perinuclear region of cytoplasm					0		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00432)|Epithelial(162;0.0192)|all cancers(182;0.125)		CTGTTCAGATGACTACCGGAA	0.592													12	174					0	0	1	0	0
TSNAXIP1	55815	broad.mit.edu	37	16	67861663	67861663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:67861663G>A	uc002euj.2	+	16	2138	c.1744G>A	c.(1744-1746)GAA>AAA	p.E582K	TSNAXIP1_uc002euf.3_3'UTR|TSNAXIP1_uc010vka.1_Missense_Mutation_p.E636K|TSNAXIP1_uc010vkb.1_Missense_Mutation_p.E567K|TSNAXIP1_uc002eug.3_Missense_Mutation_p.E290K|TSNAXIP1_uc002euh.3_Missense_Mutation_p.E290K|TSNAXIP1_uc002eui.3_Missense_Mutation_p.E290K|TSNAXIP1_uc002euk.2_Missense_Mutation_p.E315K	NM_018430	NP_060900	Q2TAA8	TXIP1_HUMAN	translin-associated factor X interacting protein	582					cell differentiation|multicellular organismal development|spermatogenesis	perinuclear region of cytoplasm					0		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00432)|Epithelial(162;0.0192)|all cancers(182;0.125)		CAGCCATGAGGAAGTGACTCT	0.637													4	31					0	0	1	0	0
EDC4	23644	broad.mit.edu	37	16	67917908	67917908	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:67917908C>T	uc002eur.2	+	29	4229	c.4063C>T	c.(4063-4065)CGG>TGG	p.R1355W	EDC4_uc010cer.2_Missense_Mutation_p.R974W|EDC4_uc002eus.2_Missense_Mutation_p.R1085W|EDC4_uc002eut.1_3'UTR|NRN1L_uc002euu.2_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	1355					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		CCCCATCACTCGGGACCACAT	0.607											OREG0023890	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	38					0	0	1	0	0
DPEP2	64174	broad.mit.edu	37	16	68024756	68024756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:68024756G>A	uc010cey.2	-	6	1041	c.877C>T	c.(877-879)CGG>TGG	p.R293W	DPEP2_uc002evd.3_Missense_Mutation_p.R293W|DPEP2_uc002eve.2_Missense_Mutation_p.R293W|DPEP2_uc002evf.2_RNA	NM_022355	NP_071750	Q9H4A9	DPEP2_HUMAN	dipeptidase 2 precursor	293		Substrate (By similarity).			hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|proteolysis	anchored to membrane|plasma membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0489)|all cancers(182;0.239)		GGAACATTCCGAGCACTGTTG	0.547													6	154					0	0	1	0	0
TMCO7	79613	broad.mit.edu	37	16	68961554	68961554	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:68961554C>T	uc002ewi.3	+	13	2223	c.2211C>T	c.(2209-2211)ATC>ATT	p.I737I		NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	737						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		ATCCGGTCATCCAAGAACTCG	0.468													8	89					0	0	1	0	0
PDPR	55066	broad.mit.edu	37	16	70154551	70154551	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:70154551C>T	uc002eyf.1	+	3	1113	c.156C>T	c.(154-156)ATC>ATT	p.I52I	CLEC18C_uc002exy.2_Intron|PDPR_uc010vlr.1_Intron	NM_017990	NP_060460	Q8NCN5	PDPR_HUMAN	pyruvate dehydrogenase phosphatase regulatory	52					glycine catabolic process|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	aminomethyltransferase activity|oxidoreductase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.124)		GAGGTGGAATCACGGGCACTT	0.572													6	60					0	0	1	0	0
FUK	197258	broad.mit.edu	37	16	70497632	70497632	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:70497632C>T	uc002eyy.2	+	3	247	c.189C>T	c.(187-189)GCC>GCT	p.A63A	FUK_uc010vmb.1_Silent_p.A63A|FUK_uc010cft.2_Silent_p.A63A|FUK_uc002eyz.2_Intron	NM_145059	NP_659496	Q8N0W3	FUK_HUMAN	fucokinase	63						cytoplasm	ATP binding|fucokinase activity			ovary(1)	1		Ovarian(137;0.0694)				CCCTCAACGCCCTGCTGGTGG	0.652													7	21					0	0	1	0	0
COG4	25839	broad.mit.edu	37	16	70534928	70534928	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:70534928G>A	uc002ezc.2	-	9	1139	c.1128C>T	c.(1126-1128)TTC>TTT	p.F376F	COG4_uc002ezb.2_5'UTR|COG4_uc010cfu.2_RNA|COG4_uc002ezd.2_Silent_p.F376F|COG4_uc002eze.2_Silent_p.F70F	NM_015386	NP_056201	Q9H9E3	COG4_HUMAN	component of oligomeric golgi complex 4	372					Golgi organization|Golgi vesicle prefusion complex stabilization|protein transport|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0		Ovarian(137;0.0694)				TCTTCTTGAGGAAGCGTAAGT	0.488													9	63					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70891683	70891683	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:70891683G>A	uc002ezr.2	-	72	12345	c.12217C>T	c.(12217-12219)CTG>TTG	p.L4073L	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4074										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CCTACCAGCAGGAAAGGGACT	0.478													4	23					0	0	1	0	0
TAT	6898	broad.mit.edu	37	16	71606176	71606176	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:71606176C>T	uc002fap.2	-	6	718	c.619G>A	c.(619-621)GAA>AAA	p.E207K		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	207					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	GCTGTCTTTTCATCAATTAGA	0.418													5	49					0	0	1	0	0
MARVELD3	91862	broad.mit.edu	37	16	71668416	71668416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:71668416G>A	uc002fat.2	+	3	979	c.916G>A	c.(916-918)GAA>AAA	p.E306K	MARVELD3_uc002fau.2_Intron|MARVELD3_uc010cge.2_Intron	NM_052858	NP_443090	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 2	306	MARVEL.|Helical; (Potential).					integral to membrane				skin(1)	1		Ovarian(137;0.125)				GCTGGTGACCGAAGGCTTGTT	0.587													5	38					0	0	1	0	0
PHLPP2	23035	broad.mit.edu	37	16	71683505	71683505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:71683505G>A	uc002fax.2	-	18	3266	c.3260C>T	c.(3259-3261)TCA>TTA	p.S1087L	PHLPP2_uc002fav.2_Intron|PHLPP2_uc010cgf.2_Missense_Mutation_p.S1020L	NM_015020	NP_055835	Q6ZVD8	PHLP2_HUMAN	PH domain and leucine rich repeat protein	1087						cytoplasm|membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)|central_nervous_system(1)	2						GCTCACCTCTGAGGTGGACAT	0.577													6	80					0	0	1	0	0
HPR	3250	broad.mit.edu	37	16	72110765	72110765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:72110765G>A	uc002fby.2	+	5	862	c.832G>A	c.(832-834)GAA>AAA	p.E278K	TXNL4B_uc010cgl.2_Intron	NM_020995	NP_066275	P00739	HPTR_HUMAN	haptoglobin-related protein precursor	278	Peptidase S1.				proteolysis	spherical high-density lipoprotein particle	hemoglobin binding|serine-type endopeptidase activity			central_nervous_system(1)	1		Ovarian(137;0.125)				CATACTGAACGAACACACCTT	0.552													6	42					0	0	1	0	0
PMFBP1	83449	broad.mit.edu	37	16	72163011	72163011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:72163011C>T	uc002fcc.3	-	13	2091	c.1919G>A	c.(1918-1920)GGA>GAA	p.G640E	PMFBP1_uc002fcd.2_Missense_Mutation_p.G635E|PMFBP1_uc002fce.2_Intron|PMFBP1_uc002fcf.2_Missense_Mutation_p.G490E|PMFBP1_uc010cgo.1_5'Flank	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	640	Potential.									ovary(2)	2		Ovarian(137;0.179)				TTCAAGTTCTCCCTCCATCAG	0.488													19	215					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72829477	72829477	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:72829477G>A	uc002fck.2	-	9	7777	c.7104C>T	c.(7102-7104)TCC>TCT	p.S2368S	ZFHX3_uc002fcl.2_Silent_p.S1454S	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2368					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				TGGCATCCATGGAATCCTCAT	0.527													13	111					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72992375	72992375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:72992375G>A	uc002fck.2	-	2	2343	c.1670C>T	c.(1669-1671)TCC>TTC	p.S557F	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	557					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GACAACAAAGGAAGAAGCAGA	0.512													6	62					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72993646	72993646	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:72993646G>A	uc002fck.2	-	2	1072	c.399C>T	c.(397-399)ATC>ATT	p.I133I	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	133					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GCTGGTAGACGATCTCCCCGG	0.711													5	62					0	0	1	0	0
CLEC18B	497190	broad.mit.edu	37	16	74452064	74452064	+	Silent	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:74452064A>G	uc002fct.2	-	3	549	c.349T>C	c.(349-351)TTG>CTG	p.L117L	CLEC18B_uc002fcu.2_Silent_p.L117L|CLEC18B_uc010vmu.1_Intron|CLEC18B_uc010vmw.1_Silent_p.L117L	NM_001011880	NP_001011880	Q6UXF7	CL18B_HUMAN	C-type lectin domain family 18, member B	117	SCP.					extracellular region	sugar binding				0						AAGGACGCCAAGCCCGCGGGC	0.662													4	54					0	0	1	0	0
MLKL	197259	broad.mit.edu	37	16	74709642	74709642	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:74709642C>T	uc002fdb.2	-	8	1500	c.1059G>A	c.(1057-1059)AGG>AGA	p.R353R	MLKL_uc002fdc.2_Intron	NM_152649	NP_689862	Q8NB16	MLKL_HUMAN	mixed lineage kinase domain-like isoform 1	353	Protein kinase.						ATP binding|protein binding|protein kinase activity			stomach(2)	2						TCTGTGTTTTCCTCAACTCAA	0.423													4	51					0	0	1	0	0
FA2H	79152	broad.mit.edu	37	16	74760214	74760214	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:74760214G>A	uc002fde.1	-	4	590	c.522C>T	c.(520-522)ATC>ATT	p.I174I	FA2H_uc010vmy.1_Intron	NM_024306	NP_077282	Q7L5A8	FA2H_HUMAN	fatty acid 2-hydroxylase	174	Helical; (Potential).				cell death|electron transport chain|fatty acid biosynthetic process|sphingolipid metabolic process|transport	endoplasmic reticulum membrane|integral to membrane|microsome	heme binding|oxidoreductase activity				0						GCACCCAGATGATGGGGACAC	0.473													8	49					0	0	1	0	0
WDR59	79726	broad.mit.edu	37	16	74972117	74972117	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:74972117G>A	uc002fdh.1	-	8	684	c.582C>T	c.(580-582)ATC>ATT	p.I194I	WDR59_uc002fdi.2_Silent_p.I194I|WDR59_uc002fdj.2_Silent_p.I194I	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	194	WD 4.									ovary(1)|breast(1)	2						CCAGGCCATGGATTTTGGAGA	0.493													6	72					0	0	1	0	0
CTRB2	440387	broad.mit.edu	37	16	75238128	75238128	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:75238128G>A	uc002fdr.2	-	7	756	c.723C>T	c.(721-723)ACC>ACT	p.T241T		NM_001025200	NP_001020371	Q6GPI1	CTRB2_HUMAN	chymotrypsin B2 precursor	241	Peptidase S1.				digestion|proteolysis	extracellular space	serine-type endopeptidase activity				0						CAGCGGGCGTGGTGGTAGAGC	0.662													10	68					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76486467	76486467	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:76486467G>A	uc002feu.1	+	10	1519	c.1134G>A	c.(1132-1134)AGG>AGA	p.R378R	CNTNAP4_uc002fev.1_Silent_p.R242R|CNTNAP4_uc010chb.1_Silent_p.R305R|CNTNAP4_uc002fex.1_Silent_p.R381R|CNTNAP4_uc002few.2_Silent_p.R353R	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	378	Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TGAGCTCCAGGAGTTATTTAG	0.418													6	64					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77325334	77325334	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:77325334C>T	uc002ffc.3	-	21	3650	c.3231G>A	c.(3229-3231)ATG>ATA	p.M1077I		NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1077	TSP type-1 4.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CGCTGCACTTCATCTCCCTCT	0.483													11	154					0	0	1	0	0
CLEC3A	10143	broad.mit.edu	37	16	78064421	78064421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:78064421G>A	uc002ffh.3	+	3	358	c.277G>A	c.(277-279)GAA>AAA	p.E93K		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	93	C-type lectin.				skeletal system development	extracellular region	sugar binding				0						TGAGGCCAATGAAGACTGCAT	0.468													5	45					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81134869	81134869	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:81134869G>A	uc002fgh.1	-	45	7239	c.7239C>T	c.(7237-7239)ATC>ATT	p.I2413I	PKD1L2_uc002fgf.1_Silent_p.I213I|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2413	Extracellular (Potential).|Interaction with GNAS and GNAI1.				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GCAAATCTACGATCTCCCCTT	0.493													4	24					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81214828	81214828	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:81214828G>A	uc002fgh.1	-	12	2046	c.2046C>T	c.(2044-2046)CTC>CTT	p.L682L	PKD1L2_uc002fgg.1_RNA|PKD1L2_uc002fgi.2_5'UTR|PKD1L2_uc002fgj.2_Silent_p.L682L|PKD1L2_uc002fgl.1_5'UTR	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	682	REJ.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGGTGACCCTGAGCAGAATGT	0.517													5	73					0	0	1	0	0
PLCG2	5336	broad.mit.edu	37	16	81934316	81934316	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:81934316G>A	uc002fgt.2	+	14	1445	c.1293G>A	c.(1291-1293)ACG>ACA	p.T431T	PLCG2_uc010chg.1_Silent_p.T431T	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	431	PI-PLC X-box.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						TGCTGTTGACGAAGCCCACGG	0.612													4	44					0	0	1	0	0
PLCG2	5336	broad.mit.edu	37	16	81944272	81944272	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:81944272C>T	uc002fgt.2	+	18	2033	c.1881C>T	c.(1879-1881)TTC>TTT	p.F627F	PLCG2_uc010chg.1_Silent_p.F627F	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	627	SH2 1.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						GCGCCGAGTTCGAGCTGCGGC	0.632													20	131					0	0	1	0	0
PLCG2	5336	broad.mit.edu	37	16	81969923	81969923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:81969923G>A	uc002fgt.2	+	27	3144	c.2992G>A	c.(2992-2994)GAC>AAC	p.D998N		NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	998	PI-PLC Y-box.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						TTCAAACTACGACCCCTTCCG	0.557													6	53					0	0	1	0	0
CDH13	1012	broad.mit.edu	37	16	83781746	83781746	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:83781746G>A	uc002fgx.2	+	11	1692	c.1572G>A	c.(1570-1572)CTG>CTA	p.L524L	CDH13_uc010vns.1_Silent_p.L571L|CDH13_uc010vnt.1_Silent_p.L270L|CDH13_uc010vnu.1_Silent_p.L485L	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	524	Cadherin 4.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		CAGGTTGGCTGAATATTAACC	0.463													13	101					0	0	1	0	0
MLYCD	23417	broad.mit.edu	37	16	83948701	83948701	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:83948701C>T	uc002fgz.2	+	5	1109	c.1089C>T	c.(1087-1089)ATC>ATT	p.I363I		NM_012213	NP_036345	O95822	DCMC_HUMAN	malonyl-CoA decarboxylase precursor	363					acyl-CoA metabolic process|fatty acid biosynthetic process	mitochondrion|peroxisome	malonyl-CoA decarboxylase activity|methylmalonyl-CoA decarboxylase activity				0						GTAAGGAAATCTCGGAGATCA	0.542													19	163					0	0	1	0	0
MLYCD	23417	broad.mit.edu	37	16	83949024	83949024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:83949024C>T	uc002fgz.2	+	5	1432	c.1412C>T	c.(1411-1413)TCC>TTC	p.S471F		NM_012213	NP_036345	O95822	DCMC_HUMAN	malonyl-CoA decarboxylase precursor	471					acyl-CoA metabolic process|fatty acid biosynthetic process	mitochondrion|peroxisome	malonyl-CoA decarboxylase activity|methylmalonyl-CoA decarboxylase activity				0						TACCTCGGCTCCAAGATCATC	0.582													4	38					0	0	1	0	0
OSGIN1	29948	broad.mit.edu	37	16	83998949	83998949	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:83998949C>T	uc002fha.2	+	7	1403	c.1020C>T	c.(1018-1020)ATC>ATT	p.I340I	OSGIN1_uc002fhb.2_Silent_p.I257I|OSGIN1_uc002fhc.2_Silent_p.I257I	NM_013370	NP_037502	Q9UJX0	OSGI1_HUMAN	oxidative stress induced growth inhibitor 1	340					cell differentiation|multicellular organismal development|negative regulation of cell growth		growth factor activity				0						GGCTGGGCATCCCCGGGGAGG	0.697													4	55					0	0	1	0	0
SLC38A8	146167	broad.mit.edu	37	16	84067056	84067056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:84067056G>A	uc002fhg.1	-	3	407	c.407C>T	c.(406-408)TCT>TTT	p.S136F		NM_001080442	NP_001073911	A6NNN8	S38A8_HUMAN	solute carrier family 38, member 8	136					amino acid transport|sodium ion transport	integral to membrane					0						CGGGGTGCCAGACAGGAGGGA	0.682													5	41					0	0	1	0	0
MBTPS1	8720	broad.mit.edu	37	16	84108247	84108247	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:84108247G>A	uc002fhi.2	-	12	2050	c.1548C>T	c.(1546-1548)GTC>GTT	p.V516V	MBTPS1_uc002fhh.2_Silent_p.V20V	NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1	516	Lumenal (Potential).				cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						TGAGGATGGTGACATTAACAA	0.493													7	36					0	0	1	0	0
HSDL1	83693	broad.mit.edu	37	16	84163235	84163235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:84163235G>A	uc002fhk.2	-	5	996	c.812C>T	c.(811-813)TCG>TTG	p.S271L	HSDL1_uc010vnv.1_Missense_Mutation_p.S216L	NM_031463	NP_113651	Q3SXM5	HSDL1_HUMAN	hydroxysteroid dehydrogenase like 1 isoform a	271						mitochondrion	oxidoreductase activity|protein binding				0						GACTTTTGGCGAAGGCACCAA	0.468													7	72					0	0	1	0	0
LRRC50	123872	broad.mit.edu	37	16	84189347	84189347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:84189347C>T	uc002fhl.3	+	5	915	c.734C>T	c.(733-735)CCC>CTC	p.P245L	LRRC50_uc010chi.1_RNA	NM_178452	NP_848547	Q8NEP3	DAAF1_HUMAN	leucine rich repeat containing 50	245					axonemal dynein complex assembly|cilium morphogenesis	cilium axoneme|cytoplasm|spindle pole	dynein binding				0						GAAAGCATGCCCGATTTGGTA	0.358									Kartagener_syndrome				10	46					0	0	1	0	0
TAF1C	9013	broad.mit.edu	37	16	84216904	84216904	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:84216904G>A	uc002fhn.2	-	5	582	c.354C>T	c.(352-354)GCC>GCT	p.A118A	TAF1C_uc002fhm.2_Silent_p.A51A|TAF1C_uc010vnx.1_Silent_p.A118A|TAF1C_uc010vny.1_5'UTR|TAF1C_uc010vnz.1_5'UTR|TAF1C_uc002fho.2_5'UTR|TAF1C_uc010voa.1_Intron|TAF1C_uc002fhp.1_RNA|TAF1C_uc010vob.1_Silent_p.A118A	NM_005679	NP_005670	Q15572	TAF1C_HUMAN	TBP-associated factor 1C isoform 1	118					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding			ovary(1)	1						GGGGCGCAAAGGCTACGTCTC	0.622													8	47					0	0	1	0	0
KCNG4	93107	broad.mit.edu	37	16	84270480	84270480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:84270480C>T	uc010voc.1	-	2	733	c.612G>A	c.(610-612)ATG>ATA	p.M204I	KCNG4_uc002fhu.1_Missense_Mutation_p.M204I	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	204						voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						GCAGCCGGTTCATGCACAGGC	0.682													6	36					0	0	1	0	0
WFDC1	58189	broad.mit.edu	37	16	84360531	84360531	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:84360531G>A	uc002fhw.2	+	6	825	c.648G>A	c.(646-648)CAG>CAA	p.Q216Q	WFDC1_uc002fhv.2_Silent_p.Q216Q	NM_021197	NP_067020	Q9HC57	WFDC1_HUMAN	WAP four-disulfide core domain 1 precursor	216					negative regulation of cell growth	extracellular space	serine-type endopeptidase inhibitor activity			breast(1)	1						GGGGACAACAGAAGCACTTTC	0.512													4	53					0	0	1	0	0
ATP2C2	9914	broad.mit.edu	37	16	84459396	84459396	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:84459396G>A	uc002fhx.2	+	11	1064	c.975G>A	c.(973-975)ACG>ACA	p.T325T	ATP2C2_uc010chj.2_Silent_p.T325T|ATP2C2_uc002fhy.2_Silent_p.T342T|ATP2C2_uc002fhz.2_Silent_p.T174T	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	325	Cytoplasmic (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						GTATGTTCACGATCGGGGTCA	0.552													17	237					0	0	1	0	0
ATP2C2	9914	broad.mit.edu	37	16	84488517	84488517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:84488517G>A	uc002fhx.2	+	21	2163	c.2074G>A	c.(2074-2076)GGG>AGG	p.G692R	ATP2C2_uc010chj.2_Missense_Mutation_p.G692R|ATP2C2_uc002fhy.2_Missense_Mutation_p.G709R|ATP2C2_uc002fhz.2_Missense_Mutation_p.G541R	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	692	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						GATCGCCATGGGGCAGACAGG	0.572													6	50					0	0	1	0	0
CRISPLD2	83716	broad.mit.edu	37	16	84911069	84911069	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:84911069C>T	uc010voh.1	+	12	1409	c.1182C>T	c.(1180-1182)ACC>ACT	p.T394T	CRISPLD2_uc010vog.1_Intron|CRISPLD2_uc002fio.2_Silent_p.T393T|CRISPLD2_uc002fin.3_Silent_p.T394T	NM_031476	NP_113664	Q9H0B8	CRLD2_HUMAN	cysteine-rich secretory protein LCCL domain	394	LCCL 2.					extracellular region|transport vesicle					0						GCTACACGACCGTTGCTCAGC	0.552													13	54					0	0	1	0	0
MVD	4597	broad.mit.edu	37	16	88722522	88722522	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:88722522G>A	uc002flg.1	-	5	601	c.594C>T	c.(592-594)CTC>CTT	p.L198L	MVD_uc002flf.1_Silent_p.L67L	NM_002461	NP_002452	P53602	MVD1_HUMAN	diphosphomevalonate decarboxylase	198					cholesterol biosynthetic process|positive regulation of cell proliferation	cytosol	ATP binding|diphosphomevalonate decarboxylase activity|Hsp70 protein binding|kinase activity|protein homodimerization activity				0				BRCA - Breast invasive adenocarcinoma(80;0.0478)		CCACAAGGATGAGCACGCGGA	0.677													5	36					0	0	1	0	0
GALNS	2588	broad.mit.edu	37	16	88909200	88909200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:88909200G>A	uc002fly.3	-	2	247	c.158C>T	c.(157-159)TCC>TTC	p.S53F	GALNS_uc010cid.2_Missense_Mutation_p.S59F|GALNS_uc002flz.3_Intron	NM_000512	NP_000503	P34059	GALNS_HUMAN	galactosamine (N-acetyl)-6-sulfate sulfatase	53			Missing (in MPS4A).|S -> F (in MPS4A).			lysosome	metal ion binding|N-acetylgalactosamine-4-sulfatase activity|N-acetylgalactosamine-6-sulfatase activity			large_intestine(2)	2				BRCA - Breast invasive adenocarcinoma(80;0.0496)	Hyaluronidase(DB00070)	GGTCTCTCTGGAGGGCTCTCC	0.602													5	26					0	0	1	0	0
ZNF778	197320	broad.mit.edu	37	16	89293954	89293954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:89293954C>T	uc002fmv.2	+	6	1513	c.1174C>T	c.(1174-1176)CCC>TCC	p.P392S	ZNF778_uc010vpf.1_Intron|ZNF778_uc002fmw.1_Missense_Mutation_p.P350S|ZNF778_uc010vpg.1_Missense_Mutation_p.P155S	NM_182531	NP_872337	Q96MU6	ZN778_HUMAN	zinc finger protein 778	392					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0269)		TGGAATAAAACCCTATACATG	0.463													4	52					0	0	1	0	0
ANKRD11	29123	broad.mit.edu	37	16	89350159	89350159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:89350159G>A	uc002fmx.1	-	9	3252	c.2791C>T	c.(2791-2793)CCT>TCT	p.P931S	ANKRD11_uc002fmy.1_Missense_Mutation_p.P931S|ANKRD11_uc002fnc.1_Missense_Mutation_p.P931S|ANKRD11_uc002fnb.1_Missense_Mutation_p.P888S	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	931	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		AGGTAGCCAGGGACACTTTTA	0.542													7	134					0	0	1	0	0
ANKRD11	29123	broad.mit.edu	37	16	89357214	89357215	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:89357214_89357215GG>AA	uc002fmx.1	-	6	880_881	c.419_420CC>TT	c.(418-420)CCC>CTT	p.P140L	ANKRD11_uc002fmy.1_Missense_Mutation_p.P140L|ANKRD11_uc002fnc.1_Missense_Mutation_p.P140L|ANKRD11_uc002fnd.2_Missense_Mutation_p.P106L|ANKRD11_uc002fne.2_Missense_Mutation_p.P106L|ANKRD11_uc002fnb.1_Missense_Mutation_p.P97L	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	140						nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		TAGACTGGGAGGGGTGCTTTGG	0.554													8	85					0	0	1	0	0
CPNE7	27132	broad.mit.edu	37	16	89662897	89662898	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:89662897_89662898CC>TT	uc002fnp.2	+	17	1900_1901	c.1770_1771CC>TT	c.(1768-1773)TCCCCT>TCTTCT	p.P591S	CPNE7_uc002fnq.2_Missense_Mutation_p.P516S	NM_014427	NP_055242	Q9UBL6	CPNE7_HUMAN	copine 7 isoform b	591					lipid metabolic process		transporter activity				0		all_hematologic(23;0.0748)		all cancers(4;3.63e-08)|OV - Ovarian serous cystadenocarcinoma(4;1.7e-06)|BRCA - Breast invasive adenocarcinoma(80;0.0147)		TCCAGGCATCCCCTGCGGCGCT	0.634													6	71					0	0	1	0	0
DPEP1	1800	broad.mit.edu	37	16	89703313	89703313	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:89703313C>T	uc010cin.2	+	6	764	c.561C>T	c.(559-561)CCC>CCT	p.P187P	DPEP1_uc002fnr.3_Silent_p.P187P|DPEP1_uc002fns.3_Silent_p.P187P	NM_001128141	NP_001121613	P16444	DPEP1_HUMAN	dipeptidase 1 precursor	187					proteolysis	anchored to membrane|apical plasma membrane|microvillus membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity|protein binding			large_intestine(1)	1		all_lung(18;0.0054)|all_hematologic(23;0.094)		BRCA - Breast invasive adenocarcinoma(80;0.0258)	Cilastatin(DB01597)	ACAGCGAGCCCCAGAGCCAAG	0.617													9	80					0	0	1	0	0
FANCA	2175	broad.mit.edu	37	16	89831327	89831328	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:89831327_89831328GG>AA	uc002fou.1	-	28	2790_2791	c.2748_2749CC>TT	c.(2746-2751)TTCCGA>TTTTGA	p.R917*	FANCA_uc010vpn.1_Nonsense_Mutation_p.R917*|FANCA_uc010vpo.1_Nonsense_Mutation_p.R46*	NM_000135	NP_000126	O15360	FANCA_HUMAN	Fanconi anemia, complementation group A isoform	917					DNA repair|protein complex assembly	cytoplasm|nucleoplasm	protein binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6		Lung NSC(15;8.48e-06)|all_lung(18;1.31e-05)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.028)		AACACCTCTCGGAAGGTTCTGT	0.55			D|Mis|N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				5	68					0	0	1	0	0
SPIRE2	84501	broad.mit.edu	37	16	89924777	89924777	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:89924777C>T	uc002foz.1	+	8	1186	c.1134C>T	c.(1132-1134)GCC>GCT	p.A378A	SPIRE2_uc010civ.1_Silent_p.A293A|SPIRE2_uc010ciw.1_Silent_p.A378A|SPIRE2_uc002fpa.1_Silent_p.A330A|SPIRE2_uc010cix.1_Silent_p.A245A	NM_032451	NP_115827	Q8WWL2	SPIR2_HUMAN	spire homolog 2	378					transport	cytoplasm|cytoskeleton	actin binding			central_nervous_system(1)	1		Lung NSC(15;5.15e-06)|all_lung(18;8.38e-06)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0286)		TCCTCAACGCCTGCTCCGGAG	0.677													17	113					0	0	1	0	0
SPIRE2	84501	broad.mit.edu	37	16	89924858	89924858	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:89924858C>T	uc002foz.1	+	8	1267	c.1215C>T	c.(1213-1215)CCC>CCT	p.P405P	SPIRE2_uc010civ.1_Silent_p.P320P|SPIRE2_uc010ciw.1_Silent_p.P405P|SPIRE2_uc002fpa.1_Silent_p.P357P|SPIRE2_uc010cix.1_Silent_p.P272P	NM_032451	NP_115827	Q8WWL2	SPIR2_HUMAN	spire homolog 2	405					transport	cytoplasm|cytoskeleton	actin binding			central_nervous_system(1)	1		Lung NSC(15;5.15e-06)|all_lung(18;8.38e-06)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0286)		GCCCGCGGCCCCGCGTGCTGC	0.597													7	83					0	0	1	0	0
TUBB3	10381	broad.mit.edu	37	16	89985911	89985911	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:89985911T>C	uc002fpf.2	+	1	653	c.245T>C	c.(244-246)TTG>TCG	p.L82S	MC1R_uc002fpe.3_Missense_Mutation_p.L82S|TUBB3_uc010ciz.1_5'Flank	NM_006086	NP_006077	Q13509	TBB3_HUMAN	tubulin, beta, 4	Error:Variant_position_missing_in_Q13509_after_alignment					'de novo' posttranslational protein folding|axon guidance|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(2)|pancreas(1)	3		all_cancers(9;1.69e-11)|Lung NSC(15;8.94e-06)|all_lung(18;1.39e-05)|all_neural(9;0.00581)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		TGCCTGGCCTTGTCGGACCTG	0.662													4	57					0	0	1	0	0
PRDM7	11105	broad.mit.edu	37	16	90124822	90124822	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:90124822C>T	uc010cje.2	-	10	1374	c.1354G>A	c.(1354-1356)GAA>AAA	p.E452K	PRDM7_uc002fqo.2_Silent_p.K151K|PRDM7_uc010cjf.2_Silent_p.K240K	NM_001098173	NP_001091643	Q9NQW5	PRDM7_HUMAN	PR domain containing 7 isoform 1	452						chromosome|nucleus	nucleic acid binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		GAGAAGTTTTCTTGCAGATGG	0.478													5	76					0	0	1	0	0
PRDM7	11105	broad.mit.edu	37	16	90141871	90141871	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr16:90141871G>A	uc010cje.2	-	2	101	c.81C>T	c.(79-81)GCC>GCT	p.A27A	PRDM7_uc010cjf.2_Intron|PRDM7_uc010cjh.1_RNA	NM_001098173	NP_001091643	Q9NQW5	PRDM7_HUMAN	PR domain containing 7 isoform 1	27	KRAB-related.					chromosome|nucleus	nucleic acid binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		TGTCTTTGAAGGCATCTTTGA	0.433													25	180					0	0	1	0	0
TUSC5	286753	broad.mit.edu	37	17	1183455	1183455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:1183455G>A	uc002fsi.1	+	1	499	c.160G>A	c.(160-162)GAG>AAG	p.E54K		NM_172367	NP_758955	Q8IXB3	TUSC5_HUMAN	LOST1	54					response to biotic stimulus	integral to membrane				skin(2)	2				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TCTGGATCTGGAGCAGAACAG	0.637													6	68					0	0	1	0	0
RILP	83547	broad.mit.edu	37	17	1551761	1551762	+	Missense_Mutation	DNP	GG	AC	AC	rs145398789	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:1551761_1551762GG>AC	uc002ftd.2	-	5	997_998	c.703_704CC>GT	c.(703-705)CCC>GTC	p.P235V	SCARF1_uc002fsy.1_5'Flank|SCARF1_uc002fsz.1_5'Flank|SCARF1_uc002fta.1_5'Flank|SCARF1_uc010cjv.1_5'Flank	NM_031430	NP_113618	Q96NA2	RILP_HUMAN	Rab interacting lysosomal protein	235					endosome to lysosome transport|protein transport	late endosome membrane|lysosomal membrane|phagocytic vesicle membrane	Rab GTPase binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TGCCTCCGAGGGGCGCCCGAGC	0.639													4	48					0	0	1	0	0
WDR81	124997	broad.mit.edu	37	17	1637215	1637215	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:1637215C>T	uc002fti.2	+	7	1464	c.1203C>T	c.(1201-1203)AGC>AGT	p.S401S	WDR81_uc002fth.2_Silent_p.S577S|WDR81_uc010vqp.1_Silent_p.S425S|WDR81_uc002ftj.2_Silent_p.S1628S|WDR81_uc010vqq.1_Silent_p.S259S	NM_001163811	NP_001157283	Q562E7	WDR81_HUMAN	WD repeat domain 81 isoform 4	401										skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TCGGCGTGAGCCAGCAGGATG	0.667													8	65					0	0	1	0	0
SERPINF2	5345	broad.mit.edu	37	17	1651891	1651891	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:1651891G>A	uc002ftk.1	+	8	793	c.716_splice	c.e8-1	p.G239_splice	SERPINF2_uc010vqr.1_Splice_Site_p.G175_splice	NM_000934	NP_000925	P08697	A2AP_HUMAN	alpha-2-antiplasmin isoform a precursor						acute-phase response|fibrinolysis|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)	Streptokinase(DB00086)	CTGGGTTTCAGGTTTCTGGAG	0.632													19	91					0	0	1	0	0
SERPINF1	5176	broad.mit.edu	37	17	1673174	1673174	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:1673174C>G	uc002ftl.2	+	3	270	c.113C>G	c.(112-114)GCG>GGG	p.A38G	SERPINF1_uc010cjw.2_Intron	NM_002615	NP_002606	P36955	PEDF_HUMAN	serine (or cysteine) proteinase inhibitor, clade	38					cell proliferation|negative regulation of angiogenesis|positive regulation of neurogenesis|regulation of proteolysis	extracellular space|melanosome	serine-type endopeptidase inhibitor activity			ovary(1)	1						AGCACAGGGGCGCTGGTGGAG	0.607													9	93					0	0	1	0	0
SMG6	23293	broad.mit.edu	37	17	2089975	2089975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:2089975G>A	uc002fub.1	-	12	3192	c.3137C>T	c.(3136-3138)TCC>TTC	p.S1046F	SMG6_uc010vqv.1_Missense_Mutation_p.S138F	NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	1046					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						CAGATCCAGGGATGTGGGAGG	0.592													6	28					0	0	1	0	0
PAFAH1B1	5048	broad.mit.edu	37	17	2570417	2570417	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:2570417G>A	uc002fuw.3	+	5	892	c.324G>A	c.(322-324)AGG>AGA	p.R108R	PAFAH1B1_uc010ckb.1_RNA	NM_000430	NP_000421	P43034	LIS1_HUMAN	platelet-activating factor acetylhydrolase,	108	WD 1.|Interaction with dynein and dynactin.				acrosome assembly|actin cytoskeleton organization|adult locomotory behavior|brain morphogenesis|corpus callosum morphogenesis|establishment of mitotic spindle orientation|G2/M transition of mitotic cell cycle|hippocampus development|layer formation in cerebral cortex|learning or memory|lipid catabolic process|microtubule organizing center organization|mitotic prometaphase|neuroblast proliferation|neuromuscular process controlling balance|neuron migration|platelet activating factor metabolic process|regulation of Rho GTPase activity|retrograde axon cargo transport|synaptic transmission|vesicle transport along microtubule	astral microtubule|cell cortex|centrosome|cytosol|kinetochore|motile primary cilium|nuclear membrane|perinuclear region of cytoplasm	dynactin binding|heparin binding|microtubule binding|phospholipase binding|phosphoprotein binding|protein homodimerization activity			skin(1)	1						GTGGTCACAGGAGTCCAGTCA	0.428													6	45					0	0	1	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2901637	2901637	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:2901637C>T	uc010ckd.2	+	14	1257	c.1167C>T	c.(1165-1167)GTC>GTT	p.V389V	RAP1GAP2_uc010cke.2_Silent_p.V374V	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	389	Rap-GAP.				regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						TCGTGCAGGTCGAGACCCCAG	0.537													10	59					0	0	1	0	0
OR1D2	4991	broad.mit.edu	37	17	2996156	2996156	+	Silent	SNP	G	A	A	rs147499202	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:2996156G>A	uc010vrb.1	-	1	135	c.135C>T	c.(133-135)ATC>ATT	p.I45I		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	45	Helical; Name=1; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						TGGCCAGGATGATGAGCACAT	0.547													6	43					0	0	1	0	0
OR1G1	8390	broad.mit.edu	37	17	3030767	3030767	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:3030767G>A	uc002fvc.1	-	1	79	c.79C>T	c.(79-81)CTC>TTC	p.L27F		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GACCCAAAGAGGGGCTTCTGC	0.498													5	35					0	0	1	0	0
OR1A2	26189	broad.mit.edu	37	17	3100883	3100883	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:3100883A>G	uc002fvd.1	+	1	71	c.71A>G	c.(70-72)AAT>AGT	p.N24S		NM_012352	NP_036484	Q9Y585	OR1A2_HUMAN	olfactory receptor, family 1, subfamily A,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CAAGAACAGAATAATGTCTTC	0.413													4	64					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	3144006	3144006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:3144006C>T	uc002fvf.2	+	1	90	c.37C>T	c.(37-39)CTT>TTT	p.L13F						SubName: Full=Olfactory receptor OR17-1;																		CTCACAGTTCCTTCTCCTGGG	0.458													4	33					0	0	1	0	0
OR3A1	4994	broad.mit.edu	37	17	3195330	3195330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:3195330C>T	uc002fvh.1	-	1	547	c.547G>A	c.(547-549)GAC>AAC	p.D183N		NM_002550	NP_002541	P47881	OR3A1_HUMAN	olfactory receptor, family 3, subfamily A,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(2)|central_nervous_system(1)	3						TGTGGGAGGTCACAGTAGAAG	0.542													7	103					0	0	1	0	0
OR3A3	8392	broad.mit.edu	37	17	3324817	3324817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:3324817C>T	uc010vrd.1	+	1	956	c.956C>T	c.(955-957)TCA>TTA	p.S319L		NM_012373	NP_036505	P47888	OR3A3_HUMAN	olfactory receptor, family 3, subfamily A,	319	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGGAAGCGATCACTGACCTGA	0.453													14	52					0	0	1	0	0
SHPK	23729	broad.mit.edu	37	17	3524632	3524632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:3524632G>A	uc002fvz.1	-	5	825	c.722C>T	c.(721-723)TCC>TTC	p.S241F		NM_013276	NP_037408	Q9UHJ6	SHPK_HUMAN	carbohydrate kinase-like	241					carbohydrate metabolic process	cytoplasm	ATP binding|sedoheptulokinase activity			ovary(1)	1				COAD - Colon adenocarcinoma(5;0.0828)		CCACATGTGGGAAGTTCTGCC	0.567													7	62					0	0	1	0	0
ITGAE	3682	broad.mit.edu	37	17	3661086	3661086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:3661086C>T	uc002fwo.3	-	9	1033	c.934G>A	c.(934-936)GAT>AAT	p.D312N		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	312	VWFA.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		ATGCCACCATCGGTGAGCACC	0.537													12	174					0	0	1	0	0
P2RX1	5023	broad.mit.edu	37	17	3801321	3801321	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:3801321C>T	uc002fww.2	-	11	1557	c.1116G>A	c.(1114-1116)GAG>GAA	p.E372E		NM_002558	NP_002549	P51575	P2RX1_HUMAN	purinergic receptor P2X1	372	Cytoplasmic (Potential).				platelet activation	integral to plasma membrane	calcium channel activity|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity			ovary(1)|skin(1)	2				LUAD - Lung adenocarcinoma(2;1.9e-05)|Lung(3;0.0173)		GCCCCATGTCCTCAGCGTATT	0.617													9	100					0	0	1	0	0
ATP2A3	489	broad.mit.edu	37	17	3844561	3844561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:3844561G>A	uc002fxb.1	-	14	1955	c.1804C>T	c.(1804-1806)CCG>TCG	p.P602S	ATP2A3_uc002fwx.1_Missense_Mutation_p.P602S|ATP2A3_uc002fwy.1_Missense_Mutation_p.P602S|ATP2A3_uc002fwz.1_Missense_Mutation_p.P602S|ATP2A3_uc002fxa.1_Missense_Mutation_p.P602S|ATP2A3_uc002fxc.1_Missense_Mutation_p.P602S|ATP2A3_uc002fxd.1_Missense_Mutation_p.P602S	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	602	Cytoplasmic (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		GGTCGCGGCGGGTCCAGCATG	0.647													6	61					0	0	1	0	0
ATP2A3	489	broad.mit.edu	37	17	3846791	3846791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:3846791C>T	uc002fxb.1	-	11	1464	c.1313G>A	c.(1312-1314)GGA>GAA	p.G438E	ATP2A3_uc002fwx.1_Missense_Mutation_p.G438E|ATP2A3_uc002fwy.1_Missense_Mutation_p.G438E|ATP2A3_uc002fwz.1_Missense_Mutation_p.G438E|ATP2A3_uc002fxa.1_Missense_Mutation_p.G438E|ATP2A3_uc002fxc.1_Missense_Mutation_p.G438E|ATP2A3_uc002fxd.1_Missense_Mutation_p.G438E	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	438	Cytoplasmic (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		CGTGGCCTCTCCCACCTTCTC	0.637													8	112					0	0	1	0	0
ZZEF1	23140	broad.mit.edu	37	17	3920960	3920960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:3920960G>A	uc002fxe.2	-	48	7770	c.7706C>T	c.(7705-7707)TCC>TTC	p.S2569F	ZZEF1_uc002fxg.1_5'Flank	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2569							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CTCTGTGCTGGAGATCAGCTT	0.587													6	54					0	0	1	0	0
ZZEF1	23140	broad.mit.edu	37	17	3969754	3969754	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:3969754G>A	uc002fxe.2	-	28	4300	c.4236C>T	c.(4234-4236)AAC>AAT	p.N1412N	ZZEF1_uc002fxi.2_5'Flank|ZZEF1_uc002fxj.1_Silent_p.N25N	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1412							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GGCTCTCAGGGTTCACCTCAG	0.463													7	147					0	0	1	0	0
ZZEF1	23140	broad.mit.edu	37	17	4013104	4013104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4013104G>A	uc002fxe.2	-	6	1184	c.1120C>T	c.(1120-1122)CAT>TAT	p.H374Y	ZZEF1_uc002fxk.1_Missense_Mutation_p.H374Y	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	374	DOC.						calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CTGAGACCATGAATTCTAGTG	0.433													6	46					0	0	1	0	0
SPNS3	201305	broad.mit.edu	37	17	4356465	4356465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4356465C>T	uc002fxt.2	+	8	1122	c.1078C>T	c.(1078-1080)CTC>TTC	p.L360F	SPNS3_uc002fxu.2_Missense_Mutation_p.L233F|SPNS3_uc002fxv.2_Missense_Mutation_p.L44F	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	360	Helical; (Potential).				lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						CTACCTGGCTCTCGTCCTGGC	0.627													10	135					0	0	1	0	0
MYBBP1A	10514	broad.mit.edu	37	17	4457550	4457550	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4457550G>A	uc002fyb.3	-	3	380	c.318C>T	c.(316-318)CTC>CTT	p.L106L	MYBBP1A_uc002fxz.3_Silent_p.L106L	NM_014520	NP_055335	Q9BQG0	MBB1A_HUMAN	MYB binding protein 1a isoform 2	106	Interaction with MYB (By similarity).				nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NLS-dependent protein nuclear import complex|nucleolus	DNA binding|DNA-directed DNA polymerase activity|transcription factor binding			ovary(1)|skin(1)	2						TGCACAAGGGGAGGTCTTCAA	0.547													13	69					0	0	1	0	0
GGT6	124975	broad.mit.edu	37	17	4461929	4461929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4461929G>A	uc002fyd.3	-	4	923	c.863C>T	c.(862-864)TCG>TTG	p.S288L	GGT6_uc010vsb.1_Missense_Mutation_p.S140L|GGT6_uc002fyc.3_Missense_Mutation_p.S256L|GGT6_uc010vsc.1_Missense_Mutation_p.S294L	NM_001122890	NP_001116362	Q6P531	GGT6_HUMAN	gamma-glutamyltransferase 6 isoform a	288	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			skin(1)	1						GGGCACAGCCGAGGGCACCTC	0.657													4	25					0	0	1	0	0
SMTNL2	342527	broad.mit.edu	37	17	4496226	4496226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4496226C>T	uc002fyf.1	+	3	557	c.490C>T	c.(490-492)CCA>TCA	p.P164S	SMTNL2_uc002fye.2_Missense_Mutation_p.P20S	NM_001114974	NP_001108446	Q2TAL5	SMTL2_HUMAN	smoothelin-like 2 isoform 1	164											0				READ - Rectum adenocarcinoma(115;0.0325)		TGTTCCAGGTCCAGGCGATGG	0.657													4	41					0	0	1	0	0
ALOX15	246	broad.mit.edu	37	17	4534978	4534978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4534978C>T	uc002fyh.2	-	14	1920	c.1906G>A	c.(1906-1908)GAA>AAA	p.E636K	ALOX15_uc010vsd.1_Missense_Mutation_p.E597K|ALOX15_uc010vse.1_Missense_Mutation_p.E658K	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	636	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	ATCTCAATTTCCTTATCCAGG	0.577													8	132					0	0	1	0	0
ALOX15	246	broad.mit.edu	37	17	4542357	4542357	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4542357C>T	uc002fyh.2	-	3	422	c.408G>A	c.(406-408)AGG>AGA	p.R136R	ALOX15_uc010vsd.1_Silent_p.R97R|ALOX15_uc010vse.1_Silent_p.R158R	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	136	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	GGTACAACTTCCTTCTCTCTT	0.592													10	97					0	0	1	0	0
ZMYND15	84225	broad.mit.edu	37	17	4643876	4643876	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4643876C>T	uc002fyt.2	+	2	72	c.33C>T	c.(31-33)TTC>TTT	p.F11F	CXCL16_uc002fyr.3_5'Flank|CXCL16_uc002fys.3_5'Flank|ZMYND15_uc002fyv.2_Silent_p.F11F|ZMYND15_uc002fyu.2_Silent_p.F11F	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2	11							zinc ion binding				0						GGGATGAGTTCCTTGATTTCA	0.577													15	99					0	0	1	0	0
ZMYND15	84225	broad.mit.edu	37	17	4646744	4646744	+	Missense_Mutation	SNP	C	T	T	rs145250532	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4646744C>T	uc002fyt.2	+	6	1330	c.1291C>T	c.(1291-1293)CGC>TGC	p.R431C	ZMYND15_uc002fyv.2_Missense_Mutation_p.R431C|ZMYND15_uc002fyu.2_Missense_Mutation_p.R431C	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2	431							zinc ion binding				0						CAGCCTTCTTCGCGGTGGTGC	0.622													7	128					0	0	1	0	0
PLD2	5338	broad.mit.edu	37	17	4711405	4711405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4711405C>T	uc002fzc.2	+	3	337	c.236C>T	c.(235-237)TCC>TTC	p.S79F	PLD2_uc010vsj.1_5'UTR|PLD2_uc002fzd.2_Missense_Mutation_p.S79F	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	79	PX.				cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	ACCAGCGGATCCAAGGTGGCC	0.632													12	82					0	0	1	0	0
PLD2	5338	broad.mit.edu	37	17	4720326	4720326	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4720326C>T	uc002fzc.2	+	16	1778	c.1677C>T	c.(1675-1677)TTC>TTT	p.F559F	PLD2_uc010vsj.1_Silent_p.F416F|PLD2_uc002fzd.2_Silent_p.F559F	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	559	Catalytic.				cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	CCCGGCACTTCATCCAGCGCT	0.632													5	49					0	0	1	0	0
SPAG7	9552	broad.mit.edu	37	17	4863178	4863178	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4863178G>A	uc002gae.2	-	6	484	c.451C>T	c.(451-453)CAG>TAG	p.Q151*	SPAG7_uc002gad.2_Nonsense_Mutation_p.Q100*|SPAG7_uc002gaf.2_Nonsense_Mutation_p.Q151*	NM_004890	NP_004881	O75391	SPAG7_HUMAN	sperm associated antigen 7	151						nucleus	nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)	2						GGCCCCTGCTGGGCTGCCTCC	0.652													9	50					0	0	1	0	0
KIF1C	10749	broad.mit.edu	37	17	4905816	4905816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4905816C>T	uc002gan.1	+	7	813	c.487C>T	c.(487-489)CGG>TGG	p.R163W		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	163	Kinesin-motor.				microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						CCCCAAGAGTCGGGGTTCTCT	0.537													13	141					0	0	1	0	0
KIF1C	10749	broad.mit.edu	37	17	4906086	4906086	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4906086C>T	uc002gan.1	+	8	995	c.669C>T	c.(667-669)ATC>ATT	p.I223I		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	223	Kinesin-motor.				microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						TCTTTACCATCGTCTTCACAC	0.612													8	125					0	0	1	0	0
GPR172B	55065	broad.mit.edu	37	17	4936279	4936279	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4936279C>T	uc002gap.3	-	5	2033	c.1320G>A	c.(1318-1320)AAG>AAA	p.K440K	GPR172B_uc002gao.3_Silent_p.K440K|GPR172B_uc010ckw.2_Silent_p.K318K|GPR172B_uc010ckx.2_3'UTR	NM_001104577	NP_001098047	Q9NWF4	RFT_HUMAN	G protein-coupled receptor 172B precursor	440						integral to plasma membrane	receptor activity|riboflavin transporter activity				0						CTACACAGTCCTTTCTGCTTT	0.607													4	35					0	0	1	0	0
GPR172B	55065	broad.mit.edu	37	17	4936589	4936589	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:4936589G>A	uc002gap.3	-	4	1814	c.1101C>T	c.(1099-1101)CCC>CCT	p.P367P	GPR172B_uc002gao.3_Silent_p.P367P|GPR172B_uc010ckw.2_Silent_p.P245P|GPR172B_uc010ckx.2_Intron	NM_001104577	NP_001098047	Q9NWF4	RFT_HUMAN	G protein-coupled receptor 172B precursor	367						integral to plasma membrane	receptor activity|riboflavin transporter activity				0						TGCCCACCAGGGGTGGGCAGG	0.622													9	82					0	0	1	0	0
USP6	9098	broad.mit.edu	37	17	5039181	5039181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:5039181G>A	uc002gau.1	+	17	2852	c.622G>A	c.(622-624)GCA>ACA	p.A208T	USP6_uc002gav.1_Missense_Mutation_p.A208T|USP6_uc010ckz.1_5'UTR|uc002gba.2_5'Flank|uc002gbb.2_5'Flank	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	208	Rab-GAP TBC.				protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						CGCATTCTGGGCACTGGTGCA	0.627			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								8	63					0	0	1	0	0
DHX33	56919	broad.mit.edu	37	17	5353595	5353595	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:5353595G>A	uc002gca.2	-	10	1658	c.1656C>T	c.(1654-1656)TTC>TTT	p.F552F	DHX33_uc002gbz.2_Silent_p.F323F|DHX33_uc002gcb.2_Silent_p.F379F|DHX33_uc010clf.2_Silent_p.F328F	NM_020162	NP_064547	Q9H6R0	DHX33_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 33	552						nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|pancreas(1)	2						CGCTGGATATGAACTTCTTGC	0.542													15	163					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5445203	5445203	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:5445203C>T	uc002gci.2	-	6	3228	c.2673G>A	c.(2671-2673)CAG>CAA	p.Q891Q	NLRP1_uc002gcg.1_Silent_p.Q891Q|NLRP1_uc002gck.2_Silent_p.Q891Q|NLRP1_uc002gcj.2_Silent_p.Q891Q|NLRP1_uc002gcl.2_Silent_p.Q891Q|NLRP1_uc002gch.3_Silent_p.Q891Q|NLRP1_uc010clh.2_Silent_p.Q891Q	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	891					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				TGCAGCTCGGCTGTCTCAGTC	0.587													9	38					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5461798	5461798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:5461798C>T	uc002gci.2	-	4	2773	c.2218G>A	c.(2218-2220)GAA>AAA	p.E740K	NLRP1_uc002gcg.1_Missense_Mutation_p.E740K|NLRP1_uc002gck.2_Missense_Mutation_p.E740K|NLRP1_uc002gcj.2_Missense_Mutation_p.E740K|NLRP1_uc002gcl.2_Missense_Mutation_p.E740K|NLRP1_uc002gch.3_Missense_Mutation_p.E740K|NLRP1_uc010clh.2_Missense_Mutation_p.E740K	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	740					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				ATGCCCATTTCTTCGAAATGG	0.512													9	85					0	0	1	0	0
AIPL1	23746	broad.mit.edu	37	17	6331771	6331771	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:6331771T>G	uc002gcp.2	-	3	427	c.332A>C	c.(331-333)AAG>ACG	p.K111T	AIPL1_uc002gcq.2_Missense_Mutation_p.K51T|AIPL1_uc002gcr.2_Intron|AIPL1_uc010clk.2_Missense_Mutation_p.K89T|AIPL1_uc010cll.2_Missense_Mutation_p.K111T|AIPL1_uc002gcs.2_Missense_Mutation_p.K111T	NM_014336	NP_055151	Q9NZN9	AIPL1_HUMAN	aryl hydrocarbon receptor interacting	111	PPIase FKBP-type.				protein farnesylation|protein folding|visual perception	cytoplasm|nucleus	farnesylated protein binding|unfolded protein binding				0				COAD - Colon adenocarcinoma(228;0.141)		TGTGGGGTCCTTGCCCTGGGC	0.637													5	78					0	0	1	0	0
SLC13A5	284111	broad.mit.edu	37	17	6599089	6599089	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:6599089G>A	uc002gdj.2	-	7	1099	c.1011C>T	c.(1009-1011)TTC>TTT	p.F337F	SLC13A5_uc010vtf.1_Silent_p.F337F|SLC13A5_uc010clq.2_Silent_p.F294F|SLC13A5_uc002gdk.2_Silent_p.F320F|SLC13A5_uc002gdl.1_Silent_p.F319F	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	337						integral to membrane	citrate transmembrane transporter activity				0						AGCCGGGCATGAAGCCGGGGT	0.507													8	137					0	0	1	0	0
SLC13A5	284111	broad.mit.edu	37	17	6599224	6599224	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:6599224C>T	uc002gdj.2	-	7	964	c.876G>A	c.(874-876)AAG>AAA	p.K292K	SLC13A5_uc010vtf.1_Silent_p.K292K|SLC13A5_uc010clq.2_Silent_p.K249K|SLC13A5_uc002gdk.2_Silent_p.K275K|SLC13A5_uc002gdl.1_Silent_p.K274K	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	292						integral to membrane	citrate transmembrane transporter activity				0						TCTCGTTTTTCTTGCTCTCTA	0.562													5	121					0	0	1	0	0
SLC13A5	284111	broad.mit.edu	37	17	6599243	6599243	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:6599243C>T	uc002gdj.2	-	7	945	c.857G>A	c.(856-858)GGC>GAC	p.G286D	SLC13A5_uc010vtf.1_Missense_Mutation_p.G286D|SLC13A5_uc010clq.2_Missense_Mutation_p.G243D|SLC13A5_uc002gdk.2_Missense_Mutation_p.G269D|SLC13A5_uc002gdl.1_Missense_Mutation_p.G268D	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	286						integral to membrane	citrate transmembrane transporter activity				0						TAGCCCGCAGCCCCAGGACTT	0.552													5	88					0	0	1	0	0
SLC13A5	284111	broad.mit.edu	37	17	6606343	6606343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:6606343G>A	uc002gdj.2	-	5	750	c.662C>T	c.(661-663)ACC>ATC	p.T221I	SLC13A5_uc010vtf.1_Missense_Mutation_p.T221I|SLC13A5_uc010clq.2_Missense_Mutation_p.T178I|SLC13A5_uc002gdk.2_Missense_Mutation_p.T204I|SLC13A5_uc002gdl.1_Missense_Mutation_p.T203I	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	221	Helical; (Potential).					integral to membrane	citrate transmembrane transporter activity				0						CAGGGTGGCGGTGCCCCCGAT	0.632													5	95					0	0	1	0	0
TEKT1	83659	broad.mit.edu	37	17	6733560	6733560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:6733560C>T	uc002gdt.2	-	2	246	c.136G>A	c.(136-138)GAT>AAT	p.D46N	TEKT1_uc010vth.1_5'UTR	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	46	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				TCAATTTCATCCACAAGCCTC	0.478													4	52					0	0	1	0	0
BCL6B	255877	broad.mit.edu	37	17	6927965	6927965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:6927965G>A	uc002geg.2	+	4	704	c.647G>A	c.(646-648)AGA>AAA	p.R216K	BCL6B_uc010clt.1_Missense_Mutation_p.R216K	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	216						nucleus	zinc ion binding			skin(1)	1						GTCGGGGAGAGAAGTTCTGGT	0.498													11	75					0	0	1	0	0
GABARAP	11337	broad.mit.edu	37	17	7144739	7144739	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7144739G>A	uc002gfb.2	-	3	314	c.210C>T	c.(208-210)CTC>CTT	p.L70L	PHF23_uc002gfa.2_5'Flank|PHF23_uc010vtt.1_5'Flank|PHF23_uc010cma.2_5'Flank	NM_007278	NP_009209	O95166	GBRAP_HUMAN	GABA(A) receptor-associated protein	70	Interaction with GPHN (By similarity).				protein targeting|synaptic transmission	autophagic vacuole membrane|Golgi membrane|microtubule|plasma membrane	beta-tubulin binding|GABA receptor binding				0						CCTCAGCTCGGAGATGAATTC	0.463													25	183					0	0	1	0	0
SLC2A4	6517	broad.mit.edu	37	17	7186634	7186634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7186634C>T	uc002gfp.2	+	2	304	c.104C>T	c.(103-105)TCC>TTC	p.S35F	SLC2A4_uc002gfo.2_Missense_Mutation_p.S35F|SLC2A4_uc010cmd.2_RNA	NM_001042	NP_001033	P14672	GTR4_HUMAN	glucose transporter 4	35	Helical; Name=1; (Potential).				carbohydrate metabolic process|glucose homeostasis|glucose import	external side of plasma membrane|integral to plasma membrane|perinuclear region of cytoplasm	D-glucose transmembrane transporter activity|protein binding				0						GTGCTTGGCTCCCTGCAGTTT	0.597													17	69					0	0	1	0	0
YBX2	51087	broad.mit.edu	37	17	7193638	7193638	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7193638G>A	uc002gfq.2	-	5	733	c.676C>T	c.(676-678)CCA>TCA	p.P226S		NM_015982	NP_057066	Q9Y2T7	YBOX2_HUMAN	Y box binding protein 2	226	Pro-rich.|Required for mRNA-binding.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter|translational attenuation	cytoplasm|nucleus	DNA binding				0						AAGAAGGGTGGGGGGCACCAT	0.652													16	156					0	0	1	0	0
NEURL4	84461	broad.mit.edu	37	17	7227237	7227237	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7227237G>A	uc002gga.1	-	12	2164	c.2157C>T	c.(2155-2157)TTC>TTT	p.F719F	NEURL4_uc002ggb.1_Silent_p.F719F|NEURL4_uc002ggc.1_Silent_p.F65F	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	719	NHR 4.						protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						GCAGCTGATGGAAGCGCAGGT	0.612											OREG0024134	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	56					0	0	1	0	0
ACAP1	9744	broad.mit.edu	37	17	7240682	7240682	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7240682G>A	uc002ggd.2	+	2	311	c.105G>A	c.(103-105)CTG>CTA	p.L35L		NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	35	BAR.|Required for formation of endosomal tubules when overexpressed with PIP5K1C.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						AGACCCGTCTGGAAAAGGTGA	0.557													7	68					0	0	1	0	0
ACAP1	9744	broad.mit.edu	37	17	7246853	7246853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7246853G>A	uc002ggd.2	+	6	706	c.500G>A	c.(499-501)CGG>CAG	p.R167Q		NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	167	BAR.|Required for formation of endosomal tubules when overexpressed with PIP5K1C.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						GCTGGGTACCGGGGACGGGCA	0.652													5	38					0	0	1	0	0
ACAP1	9744	broad.mit.edu	37	17	7251514	7251514	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7251514G>A	uc002ggd.2	+	16	1688	c.1482G>A	c.(1480-1482)GTG>GTA	p.V494V		NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	494	Arf-GAP.|Required for interaction with GULP1.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						CCATGGCAGTGAAGAAACCAG	0.607													4	11					0	0	1	0	0
SPEM1	374768	broad.mit.edu	37	17	7324224	7324224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7324224G>A	uc002ggv.2	+	3	255	c.230G>A	c.(229-231)AGA>AAA	p.R77K	FGF11_uc010vtw.1_Intron	NM_199339	NP_955371	Q8N4L4	SPEM1_HUMAN	spermatid maturation 1	77					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|integral to membrane					0		Prostate(122;0.173)				TCATTACTCAGAAAGCAGACC	0.597													6	97					0	0	1	0	0
ZBTB4	57659	broad.mit.edu	37	17	7365869	7365869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7365869G>A	uc002ghc.3	-	4	2682	c.2432C>T	c.(2431-2433)CCC>CTC	p.P811L	ZBTB4_uc002ghd.3_Missense_Mutation_p.P811L	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	811					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		GACATCCCCGGGCCTGGTGCC	0.672													7	62					0	0	1	0	0
POLR2A	5430	broad.mit.edu	37	17	7404345	7404345	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7404345C>T	uc002ghf.3	+	12	2202	c.1968C>T	c.(1966-1968)TCC>TCT	p.S656S		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	656					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				TCCACATCTCCTACCTAGAGA	0.373													6	60					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7630451	7630451	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7630451C>T	uc002giu.1	+	3	254	c.240C>T	c.(238-240)TTC>TTT	p.F80F	DNAH2_uc002git.2_Silent_p.F80F|DNAH2_uc010vuk.1_Silent_p.F80F	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	80	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				AGCCCCTCTTCCTTTCCCGAG	0.542													5	54					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7662898	7662898	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7662898G>A	uc002giu.1	+	15	2621	c.2607G>A	c.(2605-2607)TTG>TTA	p.L869L		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	869	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TTGTCATTTTGAAGAATGATC	0.453													4	57					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7671347	7671347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7671347C>T	uc002giu.1	+	22	3819	c.3805C>T	c.(3805-3807)CGT>TGT	p.R1269C		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1269	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CGGGCTGTTTCGTCGCCTCAC	0.582													4	50					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7681415	7681415	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7681415C>T	uc002giu.1	+	33	5282	c.5268C>T	c.(5266-5268)ATC>ATT	p.I1756I		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1756	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				ACTGTGTCATCCGCCAGACCA	0.532													5	49					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7721110	7721110	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7721110G>A	uc002giu.1	+	66	10186	c.10172G>A	c.(10171-10173)TGG>TAG	p.W3391*	DNAH2_uc010cnm.1_Nonsense_Mutation_p.W329*	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3391	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CCTTCCAGGTGGGCACTGATG	0.642													6	36					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7721163	7721163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7721163G>A	uc002giu.1	+	66	10239	c.10225G>A	c.(10225-10227)GAA>AAA	p.E3409K	DNAH2_uc010cnm.1_Missense_Mutation_p.E347K	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3409	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TAAGAACATGGAAGGAGGCCA	0.612													8	44					0	0	1	0	0
KDM6B	23135	broad.mit.edu	37	17	7752119	7752119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7752119C>T	uc002giw.1	+	11	2889	c.2513C>T	c.(2512-2514)TCC>TTC	p.S838F	KDM6B_uc002gix.2_Missense_Mutation_p.S140F	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	838	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						ACTCAGTATTCCCCTGGCCCC	0.647													9	91					0	0	1	0	0
CHD3	1107	broad.mit.edu	37	17	7808467	7808467	+	Silent	SNP	C	T	T	rs146189491		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7808467C>T	uc002gje.2	+	26	4272	c.4122C>T	c.(4120-4122)TTC>TTT	p.F1374F	CHD3_uc002gjd.2_Silent_p.F1433F|CHD3_uc002gjf.2_Silent_p.F1374F|CHD3_uc002gjh.2_5'UTR|SCARNA21_uc002gji.1_5'Flank	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1374					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				ATGAAGACTTCGATGAACGTC	0.512													5	64					0	0	1	0	0
GUCY2D	3000	broad.mit.edu	37	17	7916565	7916565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:7916565C>T	uc002gjt.2	+	11	2332	c.2258C>T	c.(2257-2259)CCC>CTC	p.P753L		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	753	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				GAGCTCACTCCCGAGGGTAAG	0.602													3	17					0	0	1	0	0
ALOXE3	59344	broad.mit.edu	37	17	8006774	8006774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:8006774G>A	uc010cnr.2	-	15	2193	c.1823C>T	c.(1822-1824)TCC>TTC	p.S608F	ALOXE3_uc002gka.2_Missense_Mutation_p.S764F|ALOXE3_uc010vuo.1_Missense_Mutation_p.S740F	NM_021628	NP_067641	Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3 isoform 2	608	Lipoxygenase.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			skin(3)|lung(1)|central_nervous_system(1)	5						CTGCCTCATGGATGATGGAGC	0.577													9	39					0	0	1	0	0
C17orf68	80169	broad.mit.edu	37	17	8139498	8139499	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:8139498_8139499CC>TT	uc002gkq.3	-	6	1013_1014	c.954_955GG>AA	c.(952-957)CTGGAA>CTAAAA	p.E319K	C17orf68_uc010cnv.2_RNA	NM_025099	NP_079375	Q2NKJ3	CTC1_HUMAN	alpha accessory factor 132	319					positive regulation of DNA replication|telomere maintenance	Stn1-Ten1 complex	protein binding|single-stranded DNA binding				0						AGCTCCAGTTCCAGCTCCTGCA	0.564													7	40					0	0	1	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8216545	8216545	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:8216545C>T	uc002glc.2	+	3	1028	c.907C>T	c.(907-909)CTG>TTG	p.L303L	ARHGEF15_uc002glb.1_3'UTR|ARHGEF15_uc002gld.2_Silent_p.L303L|ARHGEF15_uc010vuw.1_Intron	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	303					negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						AGATCTTGATCTGCTTTCTGA	0.592													5	30					0	0	1	0	0
MFSD6L	162387	broad.mit.edu	37	17	8700978	8700978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:8700978C>T	uc002glp.1	-	1	1609	c.1461G>A	c.(1459-1461)ATG>ATA	p.M487I		NM_152599	NP_689812	Q8IWD5	MFS6L_HUMAN	major facilitator superfamily domain containing	487						integral to membrane				central_nervous_system(1)	1						GAGCCCTCTCCATGCGGGGAG	0.612													4	25					0	0	1	0	0
USP43	124739	broad.mit.edu	37	17	9615392	9615392	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:9615392C>T	uc010cod.2	+	14	2278	c.2278C>T	c.(2278-2280)CTG>TTG	p.L760L	USP43_uc002gma.3_Silent_p.L449L|USP43_uc010vva.1_Silent_p.L755L|USP43_uc010coe.2_Silent_p.L557L|USP43_uc002gmc.3_Silent_p.L272L	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	760					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CTGCCCCTCCCTGCCCCAGGT	0.557													3	29					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10204913	10204913	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:10204913C>T	uc002gmk.1	-	40	5865	c.5775G>A	c.(5773-5775)AGG>AGA	p.R1925R		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1925	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GGCTCTTGGCCCTCAGCTTGT	0.587													6	100					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10209806	10209806	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:10209806C>T	uc002gmk.1	-	37	5526	c.5436G>A	c.(5434-5436)GGG>GGA	p.G1812G		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1812	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TCTGCTTCTTCCCGCCCTTCA	0.552													14	156					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10216581	10216581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:10216581C>T	uc002gmk.1	-	30	4165	c.4075G>A	c.(4075-4077)GCC>ACC	p.A1359T		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1359	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TGCAGCTCGGCCTTGGCTTCC	0.627													17	108					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10293807	10293808	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:10293807_10293808CT>TA	uc002gmm.2	-	40	5872_5873	c.5777_5778AG>TA	c.(5776-5778)AAG>ATA	p.K1926I	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1926	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CCTCTCGGCTCTTCACTCGCAA	0.47									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				9	116					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10301820	10301820	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:10301820C>T	uc002gmm.2	-	30	4214	c.4119G>A	c.(4117-4119)CAG>CAA	p.Q1373Q	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1373	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TGGTTCTCCACTGGGCAACCT	0.572									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				17	182					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10356643	10356643	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:10356643C>T	uc002gmn.2	-	24	3048	c.2937G>A	c.(2935-2937)GTG>GTA	p.V979V	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	979	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGAGGTTTTTCACCTTTAGAT	0.438													7	93					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10406151	10406151	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:10406151C>T	uc002gmo.2	-	24	3109	c.3015G>A	c.(3013-3015)GAG>GAA	p.E1005E	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1005	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GCTGGTGGGCCTCCTGGAGAG	0.488													9	72					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10408573	10408573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:10408573C>T	uc002gmo.2	-	21	2436	c.2342G>A	c.(2341-2343)CGA>CAA	p.R781Q	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	781	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTTCTCATCTCGCATCTCCTC	0.463													5	24					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10428187	10428187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:10428187G>A	uc010coi.2	-	34	4986	c.4858C>T	c.(4858-4860)CTC>TTC	p.L1620F	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.L1620F|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1620	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TTCTTCTTGAGCCTAATGGCA	0.502													8	71					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10432220	10432220	+	Silent	SNP	G	A	A	rs148640299		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:10432220G>A	uc010coi.2	-	27	3659	c.3531C>T	c.(3529-3531)TTC>TTT	p.F1177F	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.F1177F|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1177	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCATTTTCTGGAACTCAGCCT	0.607													8	87					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10438429	10438429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:10438429C>T	uc010coi.2	-	19	2269	c.2141G>A	c.(2140-2142)GGA>GAA	p.G714E	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.G714E|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	714	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCTTGGAAATCCTTTCCTACA	0.418													4	29					0	0	1	0	0
MYH3	4621	broad.mit.edu	37	17	10543375	10543375	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:10543375G>A	uc002gmq.1	-	21	2697	c.2620C>T	c.(2620-2622)CTA>TTA	p.L874L		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	874	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TTTTCCTCTAGCTCCTTCCTT	0.433													7	61					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11511593	11511593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:11511593C>T	uc002gne.2	+	2	633	c.565C>T	c.(565-567)CCA>TCA	p.P189S	DNAH9_uc002gnd.1_Missense_Mutation_p.P189S	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	189	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GCTGCCTCTTCCAGCAGGCTC	0.507													8	85					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11775034	11775034	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:11775034C>T	uc002gne.2	+	52	10241	c.10173C>T	c.(10171-10173)GGC>GGT	p.G3391G	DNAH9_uc010coo.2_Silent_p.G2685G	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3391					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCTACCTTGGCTTCTTCACAA	0.433													6	83					0	0	1	0	0
MYOCD	93649	broad.mit.edu	37	17	12655783	12655783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:12655783C>T	uc002gnn.2	+	10	1477	c.1178C>T	c.(1177-1179)ACC>ATC	p.T393I	MYOCD_uc002gno.2_Missense_Mutation_p.T393I|MYOCD_uc002gnp.1_Missense_Mutation_p.T297I|MYOCD_uc002gnq.2_Missense_Mutation_p.T112I	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	393	SAP.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		GTGTCAGGCACCAAAACGGCT	0.478													5	45					0	0	1	0	0
TRIM16	10626	broad.mit.edu	37	17	15517241	15517241	+	Silent	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:15517241A>T	uc002gor.1	-	9	2044	c.1707T>A	c.(1705-1707)GTT>GTA	p.V569V	CDRT1_uc002gov.3_Silent_p.V259V			O95361	TRI16_HUMAN	SubName: Full=Putative uncharacterized protein; Flags: Fragment;	Error:Variant_position_missing_in_O95361_after_alignment					histone H3 acetylation|histone H4 acetylation|positive regulation of interleukin-1 beta secretion|positive regulation of keratinocyte differentiation|positive regulation of retinoic acid receptor signaling pathway|positive regulation of transcription, DNA-dependent|response to growth hormone stimulus|response to organophosphorus|response to retinoic acid	cytoplasm|plasma membrane|PML body	DNA binding|interleukin-1 binding|NACHT domain binding|zinc ion binding			ovary(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0839)|Epithelial(1;8.4e-29)|all cancers(1;3.06e-28)|Colorectal(1;1.57e-19)|OV - Ovarian serous cystadenocarcinoma(1;6.1e-17)|COAD - Colon adenocarcinoma(1;3.38e-12)|READ - Rectum adenocarcinoma(2;1.46e-05)|BRCA - Breast invasive adenocarcinoma(8;0.0559)		CATCCAGGTCAACCAATAGAT	0.468													14	101					0	0	1	0	0
TBC1D26	353149	broad.mit.edu	37	17	15641388	15641388	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:15641388G>A	uc010cov.2	+	6	526	c.276G>A	c.(274-276)AAG>AAA	p.K92K	TBC1D26_uc010cou.1_Silent_p.K92K|TBC1D26_uc002gpb.3_RNA	NM_178571	NP_848666	Q86UD7	TBC26_HUMAN	TBC1 domain family, member 26	92						intracellular	Rab GTPase activator activity				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)|READ - Rectum adenocarcinoma(1115;0.0222)|BRCA - Breast invasive adenocarcinoma(8;0.078)		GGAGCACCAAGAAGGTAACAT	0.532													5	51					0	0	1	0	0
NCOR1	9611	broad.mit.edu	37	17	15995347	15995347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:15995347G>A	uc002gpo.2	-	22	3086	c.2846C>T	c.(2845-2847)CCA>CTA	p.P949L	NCOR1_uc002gpn.2_Missense_Mutation_p.P965L|NCOR1_uc002gpp.1_Missense_Mutation_p.P856L|NCOR1_uc002gpq.1_5'UTR|NCOR1_uc002gpr.2_Missense_Mutation_p.P856L	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	949					cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GGTTCCAATTGGTATGTTACA	0.433													4	52					0	0	1	0	0
TNFRSF13B	23495	broad.mit.edu	37	17	16843645	16843645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:16843645G>A	uc002gqs.1	-	4	639	c.626C>T	c.(625-627)TCC>TTC	p.S209F	TNFRSF13B_uc010vwt.1_RNA|TNFRSF13B_uc002gqt.1_Missense_Mutation_p.S163F	NM_012452	NP_036584	O14836	TR13B_HUMAN	tumor necrosis factor receptor 13B	209	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding|receptor activity			kidney(2)	2						CTCACCCTGGGAAGACTTGGC	0.642									IgA_Deficiency_Selective				6	91					0	0	1	0	0
RAI1	10743	broad.mit.edu	37	17	17699768	17699768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:17699768C>T	uc002grm.2	+	3	3975	c.3506C>T	c.(3505-3507)CCC>CTC	p.P1169L	RAI1_uc002grn.1_Missense_Mutation_p.P1169L	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	1169	Nuclear localization signal (Potential).					cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		GGCCGGCTCCCCAACTGCCGT	0.647													10	47					0	0	1	0	0
LRRC48	83450	broad.mit.edu	37	17	17880975	17880975	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:17880975C>T	uc010vxd.1	+	4	442	c.63C>T	c.(61-63)GCC>GCT	p.A21A	LRRC48_uc002gsa.2_Silent_p.A21A|LRRC48_uc010vxc.1_Silent_p.A21A|LRRC48_uc002gsb.2_Silent_p.A21A	NM_001130090	NP_001123562	Q9H069	LRC48_HUMAN	leucine rich repeat containing 48 isoform a	21						cytoplasm				pancreas(1)	1	all_neural(463;0.228)					TCAAGCTGGCCGTCGGGGACC	0.602													7	31					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18022636	18022636	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:18022636C>T	uc010vxh.1	+	2	860	c.522C>T	c.(520-522)TTC>TTT	p.F174F		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	174	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					AACTCCCCTTCCCGTCGGGTG	0.711													9	38					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18022835	18022835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:18022835G>A	uc010vxh.1	+	2	1059	c.721G>A	c.(721-723)GAC>AAC	p.D241N		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	241	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CTATCACCGCGACGGCGACGA	0.652													4	23					0	0	1	0	0
EPN2	22905	broad.mit.edu	37	17	19186759	19186759	+	Silent	SNP	C	T	T	rs147412182		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:19186759C>T	uc002gvd.3	+	3	775	c.327C>T	c.(325-327)TTC>TTT	p.F109F	EPN2_uc002gvc.2_Silent_p.F109F|EPN2_uc010vyn.1_Silent_p.F109F|EPN2_uc010cql.1_Intron|EPN2_uc002gve.3_Silent_p.F109F|EPN2_uc002gvf.3_Intron|EPN2_uc010vyo.1_Intron|EPN2_uc002gvg.1_Silent_p.F109F|EPN2_uc010vyp.1_Silent_p.F109F|EPN2_uc010vyq.1_Silent_p.F109F|EPN2_uc002gvh.1_Silent_p.F109F	NM_014964	NP_055779	O95208	EPN2_HUMAN	epsin 2 isoform b	109	ENTH.				endocytosis		lipid binding			skin(1)	1	all_cancers(12;3.11e-05)|all_epithelial(12;0.00121)|Hepatocellular(7;0.00345)|Breast(13;0.143)					TGAAGGACTTCCAGTACATTG	0.572													4	29					0	0	1	0	0
CCDC144NL	339184	broad.mit.edu	37	17	20799262	20799262	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:20799262C>T	uc002gyf.2	-	1	192	c.72G>A	c.(70-72)AGG>AGA	p.R24R	uc002gyg.1_Intron|uc002gyh.1_Intron	NM_001004306	NP_001004306	Q6NUI1	C144L_HUMAN	coiled-coil domain containing 144 family,	24											0						TAGGGGTCTTCCTCGTGGCGT	0.637											OREG0024248	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	32					0	0	1	0	0
USP22	23326	broad.mit.edu	37	17	20907598	20907598	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:20907598G>A	uc002gym.3	-	12	1656	c.1452C>T	c.(1450-1452)ATC>ATT	p.I484I	USP22_uc002gyn.3_Silent_p.I472I|USP22_uc002gyl.3_Silent_p.I379I	NM_015276	NP_056091	Q9UPT9	UBP22_HUMAN	ubiquitin thiolesterase 22	484					cell cycle|embryo development|histone deubiquitination|histone H4 acetylation|histone ubiquitination|positive regulation of mitotic cell cycle|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	SAGA complex	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)	1						TGTGCTGCCGGATAAAGCTGG	0.562													5	45					0	0	1	0	0
DHRS7B	25979	broad.mit.edu	37	17	21086927	21086928	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:21086927_21086928CT>TA	uc002gyo.2	+	4	357_358	c.330_331CT>TA	c.(328-333)TACTTG>TATATG	p.L111M		NM_015510	NP_056325	Q6IAN0	DRS7B_HUMAN	dehydrogenase/reductase (SDR family) member 7B	111	Peroxisomal (Potential).					integral to membrane|peroxisomal membrane	binding|oxidoreductase activity			pancreas(1)	1						ACAAGCCTTACTTGGTGACCTT	0.495													4	31					0	0	1	0	0
KSR1	8844	broad.mit.edu	37	17	25909783	25909783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:25909783G>A	uc010crg.2	+	5	666	c.221G>A	c.(220-222)GGG>GAG	p.G74E	KSR1_uc002gzj.1_Intron	NM_014238	NP_055053	Q8IVT5	KSR1_HUMAN	kinase suppressor of ras	209					Ras protein signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(1)	4	Lung NSC(42;0.00836)		BRCA - Breast invasive adenocarcinoma(3;0.00122)	UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		TGGCCCCCAGGGAGCTCCCAG	0.672													4	50					0	0	1	0	0
NOS2	4843	broad.mit.edu	37	17	26105947	26105947	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:26105947G>A	uc002gzu.2	-	10	1404	c.1140C>T	c.(1138-1140)GTC>GTT	p.V380V	NOS2_uc010crh.1_Silent_p.V380V|NOS2_uc010wab.1_Silent_p.V380V	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	380					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	AGAAGTCCCGGACTCCGATCT	0.637													15	66					0	0	1	0	0
NLK	51701	broad.mit.edu	37	17	26495639	26495639	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:26495639C>T	uc010crj.2	+	6	1215	c.1003C>T	c.(1003-1005)CTA>TTA	p.L335L	NLK_uc010cri.1_RNA	NM_016231	NP_057315	Q9UBE8	NLK_HUMAN	nemo like kinase	335	Protein kinase.				intracellular protein kinase cascade|negative regulation of Wnt receptor signaling pathway|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|serine phosphorylation of STAT3 protein|transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|MAP kinase activity|SH2 domain binding|transcription factor binding|ubiquitin protein ligase binding			ovary(1)|lung(1)|central_nervous_system(1)	3	all_lung(13;0.000343)|Lung NSC(42;0.00184)			UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		TGCAGAACTACTAGGACGAAG	0.408													8	69					0	0	1	0	0
SARM1	23098	broad.mit.edu	37	17	26687822	26687822	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:26687822C>T	uc010wah.1	+	5	490	c.483C>T	c.(481-483)TTC>TTT	p.F161F	TMEM199_uc002hba.2_Silent_p.F161F	NM_152464	NP_689677	Q6SZW1	SARM1_HUMAN	transmembrane protein 199	Error:Variant_position_missing_in_Q6SZW1_after_alignment					innate immune response	cytoplasm|intrinsic to membrane	binding|transmembrane receptor activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		TTGCTGCCTTCGTCTGCACTT	0.527													7	91					0	0	1	0	0
SLC13A2	9058	broad.mit.edu	37	17	26818635	26818635	+	Missense_Mutation	SNP	C	T	T	rs139298501		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:26818635C>T	uc002hbh.2	+	5	822	c.755C>T	c.(754-756)TCG>TTG	p.S252L	SLC13A2_uc010wal.1_Missense_Mutation_p.S209L|SLC13A2_uc010wam.1_Missense_Mutation_p.S208L|SLC13A2_uc010wan.1_Missense_Mutation_p.S301L|SLC13A2_uc010wao.1_Missense_Mutation_p.S209L|SLC13A2_uc002hbi.2_Missense_Mutation_p.S181L	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	252						integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	CAGATCAACTCGTGAGTGACA	0.632													4	40					0	0	1	0	0
FOXN1	8456	broad.mit.edu	37	17	26861902	26861902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:26861902C>T	uc010crm.2	+	8	1511	c.1313C>T	c.(1312-1314)CCC>CTC	p.P438L	FOXN1_uc002hbj.2_Missense_Mutation_p.P438L	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	438					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					GGCAAGAACCCCCTGCAGGAC	0.667													6	25					0	0	1	0	0
FOXN1	8456	broad.mit.edu	37	17	26862034	26862034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:26862034G>A	uc010crm.2	+	8	1643	c.1445G>A	c.(1444-1446)CGG>CAG	p.R482Q	FOXN1_uc002hbj.2_Missense_Mutation_p.R482Q	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	482					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					CTTGAGCTGCGGGCCCAGCCA	0.677													11	48					0	0	1	0	0
FOXN1	8456	broad.mit.edu	37	17	26864335	26864335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:26864335G>A	uc010crm.2	+	9	2026	c.1828G>A	c.(1828-1830)GAC>AAC	p.D610N	FOXN1_uc002hbj.2_Missense_Mutation_p.D610N	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	610					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					GGCACTGGGTGACCTGCACCT	0.677													7	34					0	0	1	0	0
SPAG5	10615	broad.mit.edu	37	17	26906832	26906832	+	Silent	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:26906832A>G	uc002hbq.2	-	17	2913	c.2821T>C	c.(2821-2823)TTG>CTG	p.L941L	ALDOC_uc002hbp.2_5'Flank|ALDOC_uc010cro.2_5'Flank	NM_006461	NP_006452	Q96R06	SPAG5_HUMAN	sperm associated antigen 5	941					cell division|mitosis|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytoplasm|spindle pole	protein binding			central_nervous_system(1)	1	Lung NSC(42;0.00431)					CTTCCAAGCAAGGGCACAGGA	0.527													23	108					0	0	1	0	0
SPAG5	10615	broad.mit.edu	37	17	26910556	26910556	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:26910556G>A	uc002hbq.2	-	15	2750	c.2658C>T	c.(2656-2658)CTC>CTT	p.L886L	SGK494_uc010waq.1_Silent_p.L291L	NM_006461	NP_006452	Q96R06	SPAG5_HUMAN	sperm associated antigen 5	886					cell division|mitosis|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytoplasm|spindle pole	protein binding			central_nervous_system(1)	1	Lung NSC(42;0.00431)					TCTGTAGAAAGAGAGTCAGGC	0.433													11	71					0	0	1	0	0
KIAA0100	9703	broad.mit.edu	37	17	26965597	26965597	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:26965597G>A	uc002hbu.2	-	12	1392	c.1293C>T	c.(1291-1293)TCC>TCT	p.S431S		NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	431						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					CAAGTTGAATGGAAATGTTGA	0.433													5	93					0	0	1	0	0
SUPT6H	6830	broad.mit.edu	37	17	27005189	27005189	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:27005189C>T	uc002hby.2	+	9	1185	c.1095C>T	c.(1093-1095)TTC>TTT	p.F365F	SUPT6H_uc010crt.2_Silent_p.F365F	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	365					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					CCCTGGGCTTCATGCGAAATC	0.488													5	48					0	0	1	0	0
SUPT6H	6830	broad.mit.edu	37	17	27024690	27024690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:27024690C>T	uc002hby.2	+	31	4352	c.4262C>T	c.(4261-4263)TCC>TTC	p.S1421F	SUPT6H_uc010crt.2_Missense_Mutation_p.S1421F	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	1421	SH2.				chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					CCCATGGCATCCTTTGCCCGG	0.522													5	61					0	0	1	0	0
NEK8	284086	broad.mit.edu	37	17	27064861	27064861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:27064861C>T	uc002hcp.2	+	7	914	c.914C>T	c.(913-915)CCA>CTA	p.P305L		NM_178170	NP_835464	Q86SG6	NEK8_HUMAN	NIMA-related kinase 8	305						cytoplasm|primary cilium	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|pancreas(1)|liver(1)|skin(1)	6	Lung NSC(42;0.0158)					CCTGTGAGGCCAGCCATCCCA	0.627													11	138					0	0	1	0	0
PHF12	57649	broad.mit.edu	37	17	27244400	27244400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:27244400G>A	uc002hdg.1	-	7	1567	c.1037C>T	c.(1036-1038)TCG>TTG	p.S346L	PHF12_uc010wbb.1_Missense_Mutation_p.S328L|PHF12_uc002hdi.1_Missense_Mutation_p.S342L|PHF12_uc002hdj.1_Missense_Mutation_p.S346L|PHF12_uc010crw.1_Missense_Mutation_p.S49L|PHF12_uc002hdh.1_Missense_Mutation_p.S129L	NM_001033561	NP_001028733	Q96QT6	PHF12_HUMAN	PHD finger protein 12 isoform 1	346	Interaction with SIN3A.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	protein binding|zinc ion binding			ovary(1)	1	all_cancers(5;1.95e-14)|all_epithelial(6;5e-18)|Lung NSC(42;0.01)		Epithelial(11;1.64e-05)|all cancers(11;7.47e-05)|BRCA - Breast invasive adenocarcinoma(11;9.79e-05)			GACATGCTGCGAAACGGTGTC	0.517													7	63					0	0	1	0	0
PIPOX	51268	broad.mit.edu	37	17	27371943	27371943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:27371943G>A	uc002hdr.1	+	2	507	c.181G>A	c.(181-183)GAA>AAA	p.E61K		NM_016518	NP_057602	Q9P0Z9	SOX_HUMAN	pipecolic acid oxidase	61					tetrahydrofolate metabolic process	peroxisome	L-pipecolate oxidase activity|sarcosine oxidase activity				0	Lung NSC(42;0.015)		Epithelial(11;9.87e-06)|BRCA - Breast invasive adenocarcinoma(11;3.92e-05)|all cancers(11;5.59e-05)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)		Glycine(DB00145)	GGCGTACCTGGAAGACTTTTA	0.527													11	68					0	0	1	0	0
PIPOX	51268	broad.mit.edu	37	17	27381694	27381694	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:27381694C>T	uc002hdr.1	+	5	1118	c.792C>T	c.(790-792)TAC>TAT	p.Y264Y		NM_016518	NP_057602	Q9P0Z9	SOX_HUMAN	pipecolic acid oxidase	264					tetrahydrofolate metabolic process	peroxisome	L-pipecolate oxidase activity|sarcosine oxidase activity				0	Lung NSC(42;0.015)		Epithelial(11;9.87e-06)|BRCA - Breast invasive adenocarcinoma(11;3.92e-05)|all cancers(11;5.59e-05)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)		Glycine(DB00145)	CAGGAGAGTACCCAGGGCTGA	0.567													13	52					0	0	1	0	0
ADAP2	55803	broad.mit.edu	37	17	29253878	29253878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:29253878G>A	uc002hfx.2	+	3	538	c.259G>A	c.(259-261)GCC>ACC	p.A87T	ADAP2_uc010csk.2_Missense_Mutation_p.A93T|ADAP2_uc002hfy.2_Missense_Mutation_p.A87T|ADAP2_uc010csl.2_RNA	NM_018404	NP_060874	Q9NPF8	ADAP2_HUMAN	centaurin-alpha 2 protein	87	Arf-GAP.				heart development|regulation of ARF GTPase activity	mitochondrial envelope|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding, bridging|zinc ion binding	p.?(1)		ovary(1)	1						CCGTGTGAAGGCCAAGTTCGA	0.493													5	31					0	0	1	0	0
RAB11FIP4	84440	broad.mit.edu	37	17	29858712	29858712	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:29858712C>T	uc002hgn.1	+	15	2105	c.1876C>T	c.(1876-1878)CTG>TTG	p.L626L	RAB11FIP4_uc002hgo.2_Silent_p.L524L	NM_032932	NP_116321	Q86YS3	RFIP4_HUMAN	RAB11 family interacting protein 4 (class II)	626	Necessary for interaction with RAB11A, subcellular location, homo- or heterooligomerization.|FIP-RBD.				cytokinesis|interspecies interaction between organisms|protein transport	cleavage furrow|endocytic vesicle|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding			skin(1)	1		all_cancers(10;3.62e-13)|all_epithelial(10;0.000387)|all_lung(9;0.0132)|Breast(31;0.014)|all_hematologic(16;0.015)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0259)|Ovarian(249;0.0423)|Lung NSC(157;0.066)				CCTCGCCATCCTGGACCACAA	0.567													13	54					0	0	1	0	0
MIR365-2	100126356	broad.mit.edu	37	17	29902513	29902513	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:29902513C>T	hsa-mir-365-2|MI0000769	+			c.84C>T																				0						CCCTAAAAATCCTTATTGTTC	0.537													5	37					0	0	1	0	0
C17orf79	55352	broad.mit.edu	37	17	30179858	30179858	+	Silent	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:30179858A>G	uc002hgp.2	-	3	466	c.358T>C	c.(358-360)TTG>CTG	p.L120L	C17orf79_uc010css.2_RNA	NM_018405	NP_060875	Q9NQ92	COPR5_HUMAN	chromosome 17 open reading frame 79	120					histone H4-R3 methylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone binding				0		all_cancers(10;4.54e-07)|all_hematologic(16;0.0216)|Acute lymphoblastic leukemia(14;0.0255)|Myeloproliferative disorder(56;0.0393)|Ovarian(249;0.1)				TCTGCTTTCAACTCCGAGTCC	0.527													13	116					0	0	1	0	0
LRRC37B	114659	broad.mit.edu	37	17	30348964	30348964	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:30348964C>T	uc002hgu.2	+	1	810	c.799C>T	c.(799-801)CAA>TAA	p.Q267*	LRRC37B_uc010wbx.1_Nonsense_Mutation_p.Q185*|LRRC37B_uc010csu.2_Nonsense_Mutation_p.Q267*	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	267	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				GCCCAAAAGTCAAAATCCAGA	0.547													20	99					0	0	1	0	0
ACCN1	40	broad.mit.edu	37	17	31343015	31343015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:31343015C>T	uc002hhu.2	-	9	1685	c.1411G>A	c.(1411-1413)GAC>AAC	p.D471N	ACCN1_uc002hht.2_Missense_Mutation_p.D522N	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	471	Cytoplasmic (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	CTCCCTTCGTCCTCCTCTTTG	0.532													10	55					0	0	1	0	0
AMAC1	146861	broad.mit.edu	37	17	33520547	33520547	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:33520547C>T	uc002hjd.2	-	1	866	c.780G>A	c.(778-780)GGG>GGA	p.G260G		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	260	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		AGGCGAGGATCCCCACTGCCC	0.642													19	93					0	0	1	0	0
AMAC1	146861	broad.mit.edu	37	17	33520712	33520712	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:33520712C>T	uc002hjd.2	-	1	701	c.615G>A	c.(613-615)CTG>CTA	p.L205L		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	205	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		CCAGAAGCCTCAGGGACAGCG	0.627													28	110					0	0	1	0	0
AP2B1	163	broad.mit.edu	37	17	33932734	33932734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:33932734C>T	uc002hjr.2	+	4	343	c.154C>T	c.(154-156)CCA>TCA	p.P52S	AP2B1_uc002hjq.2_Missense_Mutation_p.P52S|AP2B1_uc010wci.1_Missense_Mutation_p.P52S|AP2B1_uc002hjs.2_5'UTR|AP2B1_uc002hjt.2_Missense_Mutation_p.P52S|AP2B1_uc010ctv.2_Missense_Mutation_p.P52S	NM_001282	NP_001273	P63010	AP2B1_HUMAN	adaptor-related protein complex 2, beta 1	52					axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|coated pit|cytosol|endocytic vesicle membrane|plasma membrane	clathrin binding|protein transporter activity			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		TTCTCTCTTTCCAGACGTAGT	0.438													6	60					0	0	1	0	0
GAS2L2	246176	broad.mit.edu	37	17	34073120	34073120	+	Missense_Mutation	SNP	C	T	T	rs139624793	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:34073120C>T	uc002hjv.1	-	6	1424	c.1396G>A	c.(1396-1398)GAG>AAG	p.E466K		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	466					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CCCAGGCACTCGGCTGGGCCA	0.622													9	109					0	0	1	0	0
GAS2L2	246176	broad.mit.edu	37	17	34073134	34073134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:34073134G>A	uc002hjv.1	-	6	1410	c.1382C>T	c.(1381-1383)TCC>TTC	p.S461F		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	461					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TGGGCCAAAGGAACGAGGCAG	0.627													11	110					0	0	1	0	0
GAS2L2	246176	broad.mit.edu	37	17	34074128	34074128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:34074128C>T	uc002hjv.1	-	5	1020	c.992G>A	c.(991-993)CGA>CAA	p.R331Q		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	331					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CCTCAGCCTTCGGTCTGAAGA	0.632													17	65					0	0	1	0	0
TAF15	8148	broad.mit.edu	37	17	34171515	34171515	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:34171515C>T	uc002hkd.2	+	15	1298	c.1212C>T	c.(1210-1212)GGC>GGT	p.G404G	TAF15_uc002hkc.2_Silent_p.G401G	NM_139215	NP_631961	Q92804	RBP56_HUMAN	TBP-associated factor 15 isoform 1	404	Arg/Gly-rich.				positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding|zinc ion binding		TAF15/NR4A3(33)	bone(33)|lung(1)|skin(1)	35		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0193)		GAGAGAGGGGCTACAGAGGTC	0.328			T	TEC|CHN1|ZNF384	extraskeletal myxoid chondrosarcomas|ALL								9	100					0	0	1	0	0
C17orf66	256957	broad.mit.edu	37	17	34191814	34191814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:34191814C>T	uc002hke.1	-	4	550	c.401G>A	c.(400-402)CGA>CAA	p.R134Q	C17orf66_uc010wck.1_Intron|C17orf66_uc010wcl.1_Intron|C17orf66_uc010wcm.1_Missense_Mutation_p.R100Q	NM_152781	NP_689994	A2RTY3	CQ066_HUMAN	hypothetical protein LOC256957	134							binding			breast(2)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		GGGCCTGGATCGCATCTCAGA	0.507													7	73					0	0	1	0	0
CCL23	6368	broad.mit.edu	37	17	34340846	34340846	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:34340846G>A	uc002hkt.1	-	3	260	c.189C>T	c.(187-189)ATC>ATT	p.I63I	CCL23_uc002hks.1_Silent_p.I80I	NM_145898	NP_665905	P55773	CCL23_HUMAN	small inducible cytokine A23 isoform CKbeta8	63					cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|inflammatory response|negative regulation of cell proliferation	extracellular space	chemokine activity|heparin binding				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)	Treprostinil(DB00374)	GTGAACACGGGATGCTTCGTG	0.517													7	25					0	0	1	0	0
ACACA	31	broad.mit.edu	37	17	35538187	35538187	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:35538187G>A	uc002hnm.2	-	40	4967	c.4776C>T	c.(4774-4776)TCC>TCT	p.S1592S	ACACA_uc002hnk.2_Silent_p.S1514S|ACACA_uc002hnl.2_Silent_p.S1534S|ACACA_uc002hnn.2_Silent_p.S1592S|ACACA_uc002hno.2_Silent_p.S1629S|ACACA_uc010cuy.2_Silent_p.S286S	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	1592					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	TTGTCCCTAAGGATTGTGCCT	0.453													23	89					0	0	1	0	0
MRPL45	84311	broad.mit.edu	37	17	36478149	36478149	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:36478149C>T	uc002hpy.2	+	7	953	c.801C>T	c.(799-801)CCC>CCT	p.P267P		NM_032351	NP_115727	Q9BRJ2	RM45_HUMAN	mitochondrial ribosomal protein L45 precursor	267					intracellular protein transport|translation	mitochondrial inner membrane presequence translocase complex|ribosome	P-P-bond-hydrolysis-driven protein transmembrane transporter activity|structural constituent of ribosome				0	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				AGATCGTTCCCCCATGGGCAC	0.512											OREG0024353	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	47					0	0	1	0	0
GPR179	440435	broad.mit.edu	37	17	36485362	36485362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:36485362C>T	uc002hpz.2	-	11	4111	c.4090G>A	c.(4090-4092)GAA>AAA	p.E1364K		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1364	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				CCAGCAGCTTCCCACCCAGGC	0.612													5	79					0	0	1	0	0
GPR179	440435	broad.mit.edu	37	17	36486685	36486685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:36486685C>T	uc002hpz.2	-	11	2788	c.2767G>A	c.(2767-2769)GAG>AAG	p.E923K		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	923	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				CTCCTAGCCTCCTCATGAAGC	0.642													3	14					0	0	1	0	0
GPR179	440435	broad.mit.edu	37	17	36487411	36487411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:36487411C>T	uc002hpz.2	-	11	2062	c.2041G>A	c.(2041-2043)GAG>AAG	p.E681K		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	681	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				TTCTTCAGCTCGTCCTGTGGG	0.587													8	36					0	0	1	0	0
GPR179	440435	broad.mit.edu	37	17	36499563	36499563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:36499563G>A	uc002hpz.2	-	1	131	c.110C>T	c.(109-111)CCT>CTT	p.P37L		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	37	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				GGAAGACAGAGGGGGCAGAGA	0.652													9	42					0	0	1	0	0
SOCS7	30837	broad.mit.edu	37	17	36521269	36521269	+	Missense_Mutation	SNP	C	T	T	rs145376452		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:36521269C>T	uc002hqa.2	+	4	1160	c.1037C>T	c.(1036-1038)CCG>CTG	p.P346L	SOCS7_uc010cvl.2_Intron|SOCS7_uc002hqb.2_RNA	NM_014598	NP_055413	O14512	SOCS7_HUMAN	suppressor of cytokine signaling 7	346	Mediates interaction with SORBS3.|Poly-Pro.				intracellular signal transduction|negative regulation of signal transduction|regulation of growth	cytoplasm|nucleus|plasma membrane	protein binding|SH3 domain binding			skin(1)	1	Breast(7;3.47e-17)					CCCCTACCTCCGCCTCCTCCA	0.498													9	50					0	0	1	0	0
PLXDC1	57125	broad.mit.edu	37	17	37296031	37296031	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:37296031C>T	uc002hrg.2	-	2	343	c.131G>A	c.(130-132)TGG>TAG	p.W44*	PLXDC1_uc002hrh.2_RNA|PLXDC1_uc002hri.2_RNA|PLXDC1_uc002hrj.1_RNA|PLXDC1_uc002hrk.1_RNA	NM_020405	NP_065138	Q8IUK5	PXDC1_HUMAN	plexin domain containing 1 precursor	44	Extracellular (Potential).				angiogenesis	cytoplasm|extracellular region|integral to membrane|tight junction				ovary(1)|kidney(1)|skin(1)	3						TCTCCGGTTCCAGCCCCGCAC	0.662													9	41					0	0	1	0	0
PPP1R1B	84152	broad.mit.edu	37	17	37786251	37786251	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:37786251C>T	uc002hrz.2	+	4	659	c.192C>T	c.(190-192)CTC>CTT	p.L64L	PPP1R1B_uc002hsa.2_Silent_p.L75L|PPP1R1B_uc010cvx.2_Intron|PPP1R1B_uc002hsb.2_Silent_p.L28L|PPP1R1B_uc002hsc.2_Silent_p.L28L	NM_032192	NP_115568	Q9UD71	PPR1B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	64					signal transduction	cytosol	protein kinase inhibitor activity|protein phosphatase inhibitor activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;1.04e-44)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GGCACCATCTCAAGTCGAAGA	0.597													7	37					0	0	1	0	0
GRB7	2886	broad.mit.edu	37	17	37898851	37898852	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:37898851_37898852CC>TT	uc002hsr.2	+	3	438_439	c.188_189CC>TT	c.(187-189)TCC>TTT	p.S63F	GRB7_uc002hss.2_Missense_Mutation_p.S63F|GRB7_uc010cwc.2_Missense_Mutation_p.S63F|GRB7_uc002hst.2_Missense_Mutation_p.S63F	NM_005310	NP_005301	Q14451	GRB7_HUMAN	growth factor receptor-bound protein 7	63					blood coagulation|epidermal growth factor receptor signaling pathway|leukocyte migration|negative regulation of translation|positive regulation of cell migration|stress granule assembly	cytosol|focal adhesion|stress granule	phosphatidylinositol binding|protein kinase binding|SH3/SH2 adaptor activity			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;6.86e-60)|all cancers(3;1.65e-53)|BRCA - Breast invasive adenocarcinoma(8;2.03e-43)|STAD - Stomach adenocarcinoma(3;1.43e-12)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CGTGCCACCTCCCTCCCCTCTA	0.624													11	130					0	0	1	0	0
IKZF3	22806	broad.mit.edu	37	17	37922621	37922621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:37922621C>T	uc002hsu.2	-	8	1014	c.952G>A	c.(952-954)GAA>AAA	p.E318K	IKZF3_uc002htd.2_Missense_Mutation_p.E284K|IKZF3_uc010cwd.2_Missense_Mutation_p.E175K|IKZF3_uc002hsv.2_Missense_Mutation_p.E245K|IKZF3_uc010cwe.2_Missense_Mutation_p.E184K|IKZF3_uc010cwf.2_Missense_Mutation_p.E136K|IKZF3_uc010cwg.2_Missense_Mutation_p.E97K|IKZF3_uc002hsw.2_Missense_Mutation_p.E279K|IKZF3_uc002hsx.2_Missense_Mutation_p.E262K|IKZF3_uc002hsy.2_Missense_Mutation_p.E279K|IKZF3_uc002hsz.2_Missense_Mutation_p.E223K|IKZF3_uc002hta.2_Missense_Mutation_p.E240K|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Missense_Mutation_p.E231K|IKZF3_uc002htc.2_Missense_Mutation_p.E71K|IKZF3_uc010wel.1_Missense_Mutation_p.E71K	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	318					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CGCAGGGCTTCGGCGCCAAGA	0.532													8	59					0	0	1	0	0
IKZF3	22806	broad.mit.edu	37	17	37949026	37949026	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:37949026G>A	uc002hsu.2	-	4	386	c.324C>T	c.(322-324)TTC>TTT	p.F108F	IKZF3_uc002htd.2_Silent_p.F74F|IKZF3_uc010cwd.2_Intron|IKZF3_uc002hsv.2_Silent_p.F74F|IKZF3_uc010cwe.2_Silent_p.F108F|IKZF3_uc010cwf.2_Intron|IKZF3_uc010cwg.2_Intron|IKZF3_uc002hsw.2_Silent_p.F108F|IKZF3_uc002hsx.2_Silent_p.F108F|IKZF3_uc002hsy.2_Silent_p.F108F|IKZF3_uc002hsz.2_Silent_p.F108F|IKZF3_uc002hta.2_Silent_p.F108F|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Intron|IKZF3_uc002htc.2_5'UTR	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	108					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			TGCTACTATCGAATGAGACAA	0.408													5	35					0	0	1	0	0
IKZF3	22806	broad.mit.edu	37	17	37949149	37949149	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:37949149T>G	uc002hsu.2	-	4	263	c.201A>C	c.(199-201)AGA>AGC	p.R67S	IKZF3_uc002htd.2_Missense_Mutation_p.R33S|IKZF3_uc010cwd.2_Intron|IKZF3_uc002hsv.2_Missense_Mutation_p.R33S|IKZF3_uc010cwe.2_Missense_Mutation_p.R67S|IKZF3_uc010cwf.2_Intron|IKZF3_uc010cwg.2_Intron|IKZF3_uc002hsw.2_Missense_Mutation_p.R67S|IKZF3_uc002hsx.2_Missense_Mutation_p.R67S|IKZF3_uc002hsy.2_Missense_Mutation_p.R67S|IKZF3_uc002hsz.2_Missense_Mutation_p.R67S|IKZF3_uc002hta.2_Missense_Mutation_p.R67S|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Intron|IKZF3_uc002htc.2_5'UTR	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	67					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CATTCTCATCTCTTTCACTGT	0.348													3	27					0	0	1	0	0
IKZF3	22806	broad.mit.edu	37	17	37985721	37985721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:37985721C>T	uc002hsu.2	-	3	144	c.82G>A	c.(82-84)GAC>AAC	p.D28N	IKZF3_uc002htd.2_Intron|IKZF3_uc010cwd.2_Missense_Mutation_p.D28N|IKZF3_uc002hsv.2_Intron|IKZF3_uc010cwe.2_Missense_Mutation_p.D28N|IKZF3_uc010cwf.2_Missense_Mutation_p.D28N|IKZF3_uc010cwg.2_Missense_Mutation_p.D28N|IKZF3_uc002hsw.2_Missense_Mutation_p.D28N|IKZF3_uc002hsx.2_Missense_Mutation_p.D28N|IKZF3_uc002hsy.2_Missense_Mutation_p.D28N|IKZF3_uc002hsz.2_Missense_Mutation_p.D28N|IKZF3_uc002hta.2_Missense_Mutation_p.D28N|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Missense_Mutation_p.D28N|IKZF3_uc002htc.2_5'UTR	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	28					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			AAACTGTAGTCATTCAAAACC	0.368													12	51					0	0	1	0	0
ZPBP2	124626	broad.mit.edu	37	17	38027073	38027073	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:38027073G>A	uc002hte.2	+	3	397	c.244_splice	c.e3+1	p.G82_splice	ZPBP2_uc002htf.2_Splice_Site_p.G60_splice	NM_199321	NP_955353	Q6X784	ZPBP2_HUMAN	zona pellucida binding protein 2 isoform 2						binding of sperm to zona pellucida	extracellular region				ovary(1)	1	Colorectal(19;0.000442)		Lung(15;0.00849)|LUSC - Lung squamous cell carcinoma(15;0.171)			ACGTTAACAGGTAAATTTGAT	0.279													5	28					0	0	1	0	0
GSDMA	284110	broad.mit.edu	37	17	38126810	38126810	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:38126810G>A	uc002htl.1	+	4	586	c.468G>A	c.(466-468)GTG>GTA	p.V156V	GSDMA_uc002htm.1_Silent_p.V156V	NM_178171	NP_835465	Q96QA5	GSDMA_HUMAN	gasdermin 1	156					apoptosis|induction of apoptosis	perinuclear region of cytoplasm					0						TGATGGAGGTGGTGGAGACGG	0.567													5	10					0	0	1	0	0
TOP2A	7153	broad.mit.edu	37	17	38568006	38568006	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:38568006G>A	uc002huq.2	-	8	980	c.854C>T	c.(853-855)TCC>TTC	p.S285F	TOP2A_uc002hur.1_5'Flank	NM_001067	NP_001058	P11388	TOP2A_HUMAN	DNA topoisomerase II, alpha isozyme	285					apoptotic chromosome condensation|DNA ligation|DNA repair|DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|phosphatidylinositol-mediated signaling|positive regulation of apoptosis|positive regulation of retroviral genome replication|resolution of meiotic recombination intermediates|sister chromatid segregation	cytoplasm|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|drug binding|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity|ubiquitin binding			ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7		Breast(137;0.00328)	STAD - Stomach adenocarcinoma(5;0.00183)		Amsacrine(DB00276)|Ciprofloxacin(DB00537)|Dexrazoxane(DB00380)|Doxorubicin(DB00997)|Enoxacin(DB00467)|Epirubicin(DB00445)|Etoposide(DB00773)|Fleroxacin(DB04576)|Gatifloxacin(DB01044)|Idarubicin(DB01177)|Levofloxacin(DB01137)|Lomefloxacin(DB00978)|Lucanthone(DB04967)|Mitoxantrone(DB01204)|Moxifloxacin(DB00218)|Norfloxacin(DB01059)|Ofloxacin(DB01165)|Pefloxacin(DB00487)|Podofilox(DB01179)|Sparfloxacin(DB01208)|Teniposide(DB00444)|Trovafloxacin(DB00685)|Valrubicin(DB00385)	TACTTTCAAGGAGTTACCAGT	0.358													10	29					0	0	1	0	0
TNS4	84951	broad.mit.edu	37	17	38652341	38652341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:38652341C>T	uc010cxb.2	-	2	501	c.337G>A	c.(337-339)GAC>AAC	p.D113N		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	113					apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			AAGGTGGGGTCCAGTTCCAGG	0.587													10	123					0	0	1	0	0
KRT25	147183	broad.mit.edu	37	17	38906672	38906672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:38906672C>T	uc002hve.2	-	6	1196	c.1135G>A	c.(1135-1137)GAA>AAA	p.E379K		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	379	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				GTCTCAATTTCTTTTTCCAGG	0.498													12	141					0	0	1	0	0
KRT28	162605	broad.mit.edu	37	17	38953468	38953468	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:38953468C>T	uc002hvh.1	-	4	822	c.756G>A	c.(754-756)GGG>GGA	p.G252G		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	252	Rod.|Linker 12.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				CGAGGTCTACCCCCGGGGCCG	0.592													8	63					0	0	1	0	0
KRT28	162605	broad.mit.edu	37	17	38954639	38954639	+	Missense_Mutation	SNP	C	T	T	rs78572335	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:38954639C>T	uc002hvh.1	-	3	604	c.538G>A	c.(538-540)GAA>AAA	p.E180K		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	180	Rod.|Coil 1B.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				AGCTCATTTTCATACCTTGGG	0.463													9	90					0	0	1	0	0
KRTAP1-3	81850	broad.mit.edu	37	17	39191045	39191045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39191045C>T	uc002hvv.2	-	1	63	c.29G>A	c.(28-30)GGA>GAA	p.G10E		NM_030966	NP_112228	Q8IUG1	KRA13_HUMAN	keratin associated protein 1-3	10						extracellular region|keratin filament	structural constituent of epidermis				0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			GCTGGGATATCCACAGAAGCT	0.587													4	62					0	0	1	0	0
KRTAP4-2	85291	broad.mit.edu	37	17	39334189	39334189	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39334189G>A	uc002hwd.2	-	1	272	c.228C>T	c.(226-228)TGC>TGT	p.C76C		NM_033062	NP_149051	Q9BYR5	KRA42_HUMAN	keratin associated protein 4-2	76	20 X 5 AA repeats OF C-C-[GRQVS]-[SPT]- [VSTQ].|13.					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			AGCTGGGACGGCAGCAGGTGG	0.667													9	75					0	0	1	0	0
KRTAP4-2	85291	broad.mit.edu	37	17	39334336	39334336	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39334336C>T	uc002hwd.2	-	1	125	c.81G>A	c.(79-81)CAG>CAA	p.Q27Q		NM_033062	NP_149051	Q9BYR5	KRA42_HUMAN	keratin associated protein 4-2	27	20 X 5 AA repeats OF C-C-[GRQVS]-[SPT]- [VSTQ].|3.					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			AGCAGGTGGTCTGGCAGCAGC	0.637													21	83					0	0	1	0	0
KRT33A	3883	broad.mit.edu	37	17	39503339	39503339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39503339C>T	uc002hwk.1	-	4	761	c.724G>A	c.(724-726)GAA>AAA	p.E242K		NM_004138	NP_004129	O76009	KT33A_HUMAN	keratin 33A	242	Coil 2.|Rod.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				TGCTCCACTTCCCTGCGGTTG	0.627													7	47					0	0	1	0	0
KRT31	3881	broad.mit.edu	37	17	39553626	39553626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39553626C>T	uc002hwn.2	-	1	219	c.166G>A	c.(166-168)GAG>AAG	p.E56K	KRT31_uc010cxn.2_Missense_Mutation_p.E56K	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	56	Head.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				GTCTCCTTCTCGCTACCATTG	0.627													20	96					0	0	1	0	0
KRT32	3882	broad.mit.edu	37	17	39623286	39623286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39623286C>T	uc002hwr.2	-	1	353	c.292G>A	c.(292-294)GAA>AAA	p.E98K		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	98	Coil 1A.|Rod.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				TGCATGGTTTCCTTCTCATTG	0.607													14	102					0	0	1	0	0
KRT35	3886	broad.mit.edu	37	17	39637053	39637053	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39637053C>T	uc002hws.2	-	1	340	c.297G>A	c.(295-297)GAG>GAA	p.E99E		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	99	Rod.|Coil 1A.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				ATTGCATGGTCTCCTTCTCAT	0.642													8	53					0	0	1	0	0
KRT36	8689	broad.mit.edu	37	17	39643308	39643308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39643308C>T	uc002hwt.2	-	6	1102	c.1102G>A	c.(1102-1104)GAC>AAC	p.D368N		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	368	Rod.|Coil 2.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				CGCTCCAGGTCGCAGCGGATC	0.647													6	111					0	0	1	0	0
KRT36	8689	broad.mit.edu	37	17	39643659	39643659	+	Missense_Mutation	SNP	C	T	T	rs145372311	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39643659C>T	uc002hwt.2	-	5	931	c.931G>A	c.(931-933)GAG>AAG	p.E311K		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	311	Rod.|Coil 2.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				CGTCTCAGCTCGATGATCTCC	0.627													12	26					0	0	1	0	0
KRT36	8689	broad.mit.edu	37	17	39643881	39643881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39643881C>T	uc002hwt.2	-	4	808	c.808G>A	c.(808-810)GAG>AAG	p.E270K		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	270	Rod.|Coil 2.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				ACCAGGGCCTCGTACTGGCAT	0.602													8	86					0	0	1	0	0
KRT36	8689	broad.mit.edu	37	17	39645853	39645853	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39645853G>A	uc002hwt.2	-	1	264	c.264C>T	c.(262-264)TCC>TCT	p.S88S		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	88	Head.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				TGCCGTTGAAGGAGCCCTCGC	0.632													29	70					0	0	1	0	0
KRT36	8689	broad.mit.edu	37	17	39645993	39645993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39645993G>A	uc002hwt.2	-	1	124	c.124C>T	c.(124-126)CTC>TTC	p.L42F		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	42	Head.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				GCACCGGCGAGACTGGGGACC	0.622													9	57					0	0	1	0	0
KRT13	3860	broad.mit.edu	37	17	39659624	39659624	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39659624T>C	uc002hwu.1	-	3	713	c.650A>G	c.(649-651)GAG>GGG	p.E217G	KRT13_uc002hwv.1_Missense_Mutation_p.E217G|KRT13_uc002hww.2_Missense_Mutation_p.E110G|KRT13_uc010wfr.1_Missense_Mutation_p.E110G|KRT13_uc010cxo.2_Missense_Mutation_p.E217G|KRT13_uc002hwx.1_Missense_Mutation_p.E205G	NM_153490	NP_705694	P13646	K1C13_HUMAN	keratin 13 isoform a	217	Coil 1B.|Rod.				epidermis development	intermediate filament	structural molecule activity			ovary(2)|skin(2)|pancreas(1)	5		Breast(137;0.000286)				CAGAGTGAGCTCATCCAGCAC	0.502													5	89					0	0	1	0	0
KRT13	3860	broad.mit.edu	37	17	39661323	39661323	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39661323T>G	uc002hwu.1	-	1	543	c.480A>C	c.(478-480)GAA>GAC	p.E160D	KRT13_uc002hwv.1_Missense_Mutation_p.E160D|KRT13_uc002hww.2_Missense_Mutation_p.E53D|KRT13_uc010wfr.1_Missense_Mutation_p.E53D|KRT13_uc010cxo.2_Missense_Mutation_p.E160D|KRT13_uc002hwx.1_Missense_Mutation_p.E148D	NM_153490	NP_705694	P13646	K1C13_HUMAN	keratin 13 isoform a	160	Coil 1B.|Rod.				epidermis development	intermediate filament	structural molecule activity			ovary(2)|skin(2)|pancreas(1)	5		Breast(137;0.000286)				CCCGGAGCTCTTCAATGGTCT	0.592													5	35					0	0	1	0	0
KRT15	3866	broad.mit.edu	37	17	39671762	39671762	+	Silent	SNP	G	A	A	rs142117852	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39671762G>A	uc002hwy.2	-	6	1400	c.1209C>T	c.(1207-1209)ATC>ATT	p.I403I	KRT15_uc002hwz.2_Silent_p.I305I|KRT15_uc002hxa.2_Silent_p.I238I|KRT15_uc002hxb.1_Silent_p.I238I	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	403	Rod.|Coil 2.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				GGTAAGTAGCGATCTCCTGCT	0.607													12	71					0	0	1	0	0
KRT15	3866	broad.mit.edu	37	17	39674981	39674981	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39674981C>T	uc002hwy.2	-	1	290	c.99G>A	c.(97-99)GGG>GGA	p.G33G	KRT15_uc002hwz.2_5'UTR|KRT15_uc002hxa.2_5'UTR|KRT15_uc002hxb.1_Intron	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	33	Gly-rich.|Head.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				CAGAGAGACTCCCCCCACCAA	0.587													7	63					0	0	1	0	0
KRT9	3857	broad.mit.edu	37	17	39727686	39727686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39727686C>T	uc002hxe.3	-	1	625	c.559G>A	c.(559-561)GAT>AAT	p.D187N	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	187	Rod.|Coil 1A.				intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				TCGTACCAATCCTGGATCTTA	0.488													6	118					0	0	1	0	0
KRT16	3868	broad.mit.edu	37	17	39767630	39767630	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39767630C>T	uc002hxg.3	-	3	877	c.738G>A	c.(736-738)GAG>GAA	p.E246E	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	246	Coil 1B.|Rod.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				AGGCCAGCTCCTCCTTCAGGC	0.647													4	64					0	0	1	0	0
HAP1	9001	broad.mit.edu	37	17	39881380	39881380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39881380C>T	uc002hxm.1	-	12	1601	c.1589G>A	c.(1588-1590)CGA>CAA	p.R530Q	JUP_uc010wfs.1_Intron|HAP1_uc002hxn.1_Missense_Mutation_p.R478Q|HAP1_uc002hxo.1_Missense_Mutation_p.R461Q|HAP1_uc002hxp.1_Missense_Mutation_p.R453Q	NM_177977	NP_817084	P54257	HAP1_HUMAN	huntingtin-associated protein 1 isoform 2	530	Glu-rich.				brain development|protein localization|synaptic transmission	actin cytoskeleton	protein binding			ovary(2)	2		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			CACCTGCTCTCGATCCTCACT	0.607													8	160					0	0	1	0	0
JUP	3728	broad.mit.edu	37	17	39914689	39914689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:39914689C>T	uc002hxq.2	-	10	2012	c.1735G>A	c.(1735-1737)GAG>AAG	p.E579K	JUP_uc010wfs.1_Intron|JUP_uc002hxr.2_Missense_Mutation_p.E579K|JUP_uc002hxs.2_Missense_Mutation_p.E579K	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	579	ARM 9.				adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		CGGAAGATCTCCATGCGGTTC	0.612													11	51					0	0	1	0	0
KLHL11	55175	broad.mit.edu	37	17	40011334	40011334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40011334G>A	uc002hyf.1	-	2	791	c.785C>T	c.(784-786)TCT>TTT	p.S262F		NM_018143	NP_060613	Q9NVR0	KLH11_HUMAN	kelch-like 11 precursor	262	BACK.					extracellular region					0		Breast(137;0.00156)				AACCTCTTCAGAATCAACTGT	0.368													8	43					0	0	1	0	0
ACLY	47	broad.mit.edu	37	17	40030083	40030083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40030083G>A	uc002hyg.2	-	23	2786	c.2623C>T	c.(2623-2625)CTC>TTC	p.L875F	ACLY_uc002hyh.2_Missense_Mutation_p.L865F|ACLY_uc002hyi.2_Missense_Mutation_p.L929F|ACLY_uc010wfx.1_Missense_Mutation_p.L919F|ACLY_uc010wfy.1_Missense_Mutation_p.L604F	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	875					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				AACCAGAGGAGGCCGAGGACC	0.572													8	91					0	0	1	0	0
ACLY	47	broad.mit.edu	37	17	40039454	40039454	+	Missense_Mutation	SNP	C	A	A	rs141297025	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40039454C>A	uc002hyg.2	-	20	2349	c.2186G>T	c.(2185-2187)CGG>CTG	p.R729L	ACLY_uc002hyh.2_Missense_Mutation_p.R719L|ACLY_uc002hyi.2_Missense_Mutation_p.R783L|ACLY_uc010wfx.1_Missense_Mutation_p.R773L|ACLY_uc010wfy.1_Missense_Mutation_p.R458L	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	729					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				CTTGATGCCCCGGCAAATCTT	0.532													4	75					1	1	1	1	0
ACLY	47	broad.mit.edu	37	17	40063726	40063726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40063726G>A	uc002hyg.2	-	7	879	c.716C>T	c.(715-717)CCT>CTT	p.P239L	ACLY_uc002hyh.2_Missense_Mutation_p.P239L|ACLY_uc002hyi.2_Missense_Mutation_p.P293L|ACLY_uc010wfx.1_Missense_Mutation_p.P293L|ACLY_uc010wfy.1_Intron	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	239					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				GAAGGGGGGAGGGAACTCGAT	0.577													6	94					0	0	1	0	0
ACLY	47	broad.mit.edu	37	17	40070073	40070073	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40070073G>A	uc002hyg.2	-	2	217	c.54C>T	c.(52-54)TTC>TTT	p.F18F	ACLY_uc002hyh.2_Silent_p.F18F|ACLY_uc002hyi.2_Silent_p.F72F|ACLY_uc010wfx.1_Silent_p.F72F|ACLY_uc010wfy.1_Silent_p.F18F	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	18					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				TGGTACAGATGAACTTGTAAA	0.562													8	160					0	0	1	0	0
KAT2A	2648	broad.mit.edu	37	17	40269426	40269426	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40269426G>A	uc002hyx.2	-	10	1677	c.1617C>T	c.(1615-1617)ATC>ATT	p.I539I		NM_021078	NP_066564	Q92830	KAT2A_HUMAN	general control of amino acid synthesis 5-like	539	N-acetyltransferase.				chromatin remodeling|histone deubiquitination|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	H3 histone acetyltransferase activity|histone deacetylase binding|protein binding|transcription coactivator activity			upper_aerodigestive_tract(1)|lung(1)	2						CGAGGCGGGCGATATACTCCT	0.627													4	48					0	0	1	0	0
RAB5C	5878	broad.mit.edu	37	17	40280676	40280676	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40280676G>A	uc002hyz.2	-	4	626	c.309C>T	c.(307-309)ATC>ATT	p.I103I	RAB5C_uc002hza.2_Silent_p.I103I|RAB5C_uc010cxx.2_Silent_p.I136I|RAB5C_uc010cxy.2_Silent_p.I15I	NM_201434	NP_958842	P51148	RAB5C_HUMAN	RAB5C, member RAS oncogene family isoform a	103					protein transport|small GTPase mediated signal transduction	early endosome membrane|melanosome|plasma membrane	GTP binding|GTPase activity|protein binding			large_intestine(1)|skin(1)	2		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.128)		CTGTGTTGGTGATGTCATAGA	0.527													9	92					0	0	1	0	0
STAT5B	6777	broad.mit.edu	37	17	40359636	40359636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40359636G>A	uc002hzh.2	-	16	2186	c.2017C>T	c.(2017-2019)CGG>TGG	p.R673W		NM_012448	NP_036580	P51692	STA5B_HUMAN	signal transducer and activator of transcription	673	SH2.				2-oxoglutarate metabolic process|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|fatty acid metabolic process|isoleucine metabolic process|JAK-STAT cascade involved in growth hormone signaling pathway|oxaloacetate metabolic process|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cytosol|nucleoplasm	calcium ion binding|glucocorticoid receptor binding|sequence-specific DNA binding transcription factor activity			ovary(3)|lung(2)|skin(1)	6		all_cancers(22;4.15e-07)|all_epithelial(22;2.83e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.135)	Dasatinib(DB01254)	TCTTTTGGCCGATCAGGAAAC	0.428													6	75					0	0	1	0	0
STAT3	6774	broad.mit.edu	37	17	40474489	40474489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40474489C>T	uc002hzl.1	-	21	2152	c.1912G>A	c.(1912-1914)GAA>AAA	p.E638K	STAT3_uc002hzk.1_Missense_Mutation_p.E638K|STAT3_uc002hzm.1_Missense_Mutation_p.E638K|STAT3_uc010wgh.1_Missense_Mutation_p.E540K|STAT3_uc002hzn.1_Missense_Mutation_p.E638K	NM_139276	NP_644805	P40763	STAT3_HUMAN	signal transducer and activator of transcription	638	SH2.				cellular component movement|eating behavior|eye photoreceptor cell differentiation|glucose homeostasis|interleukin-6-mediated signaling pathway|interspecies interaction between organisms|JAK-STAT cascade involved in growth hormone signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein import into nucleus|response to estradiol stimulus|sexual reproduction|temperature homeostasis	cytosol|nucleus|plasma membrane	calcium ion binding|ligand-regulated transcription factor activity|protein dimerization activity|protein kinase binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		all_cancers(22;1.39e-06)|all_epithelial(22;2.95e-05)|Breast(137;0.000135)		BRCA - Breast invasive adenocarcinoma(366;0.139)		GTGTATGGTTCCACGGACTGG	0.453									Hyperimmunoglobulin_E_Recurrent_Infection_Syndrome				14	163					0	0	1	0	0
STAT3	6774	broad.mit.edu	37	17	40498622	40498622	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40498622G>A	uc002hzl.1	-	3	478	c.238C>T	c.(238-240)CAG>TAG	p.Q80*	STAT3_uc002hzk.1_Nonsense_Mutation_p.Q80*|STAT3_uc002hzm.1_Nonsense_Mutation_p.Q80*|STAT3_uc010wgh.1_5'UTR|STAT3_uc002hzn.1_Nonsense_Mutation_p.Q80*	NM_139276	NP_644805	P40763	STAT3_HUMAN	signal transducer and activator of transcription	80					cellular component movement|eating behavior|eye photoreceptor cell differentiation|glucose homeostasis|interleukin-6-mediated signaling pathway|interspecies interaction between organisms|JAK-STAT cascade involved in growth hormone signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein import into nucleus|response to estradiol stimulus|sexual reproduction|temperature homeostasis	cytosol|nucleus|plasma membrane	calcium ion binding|ligand-regulated transcription factor activity|protein dimerization activity|protein kinase binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		all_cancers(22;1.39e-06)|all_epithelial(22;2.95e-05)|Breast(137;0.000135)		BRCA - Breast invasive adenocarcinoma(366;0.139)		AGATTGTGCTGATAGAGAACA	0.468									Hyperimmunoglobulin_E_Recurrent_Infection_Syndrome				11	189					0	0	1	0	0
COASY	80347	broad.mit.edu	37	17	40716743	40716744	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40716743_40716744CC>TT	uc002hzz.2	+	5	1221_1222	c.1064_1065CC>TT	c.(1063-1065)CCC>CTT	p.P355L	COASY_uc010cyj.2_Missense_Mutation_p.P384L|COASY_uc002iab.2_Missense_Mutation_p.P60L|COASY_uc002iad.2_Missense_Mutation_p.P355L|COASY_uc002iac.2_Missense_Mutation_p.P355L|COASY_uc002iae.2_Missense_Mutation_p.P150L|MLX_uc002iaf.2_5'Flank|MLX_uc002iag.2_5'Flank|MLX_uc002iah.2_5'Flank	NM_001042529	NP_001035994	Q13057	COASY_HUMAN	coenzyme A synthase isoform a	355	Phosphopantetheine adenylyltransferase.				coenzyme A biosynthetic process|pantothenate metabolic process	mitochondrial outer membrane	ATP binding|dephospho-CoA kinase activity|pantetheine-phosphate adenylyltransferase activity				0		all_cancers(22;1.06e-05)|Breast(137;0.000153)|all_epithelial(22;0.000344)		BRCA - Breast invasive adenocarcinoma(366;0.13)		CCAGAGCTCCCCACATGTCTCT	0.574													20	119					0	0	1	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40835847	40835847	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40835847G>A	uc002iay.2	+	2	292	c.76G>A	c.(76-78)GAC>AAC	p.D26N	CCR10_uc002iax.3_5'Flank|CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	26	Extracellular (Potential).|F5/8 type C.				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		AGACGGCTGCGACGAGGAGCT	0.642													5	35					0	0	1	0	0
EZH1	2145	broad.mit.edu	37	17	40858195	40858195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40858195G>A	uc002iaz.2	-	16	1814	c.1669C>T	c.(1669-1671)CGT>TGT	p.R557C	EZH1_uc002iba.2_Missense_Mutation_p.R548C|EZH1_uc010wgt.1_Missense_Mutation_p.R487C|EZH1_uc010wgu.1_Missense_Mutation_p.R563C|EZH1_uc010wgv.1_Missense_Mutation_p.R517C|EZH1_uc010wgw.1_Missense_Mutation_p.R418C|EZH1_uc010cyp.2_Missense_Mutation_p.R458C|EZH1_uc010cyq.2_Missense_Mutation_p.R474C|EZH1_uc010cyo.1_Missense_Mutation_p.R220C	NM_001991	NP_001982	Q92800	EZH1_HUMAN	enhancer of zeste homolog 1	557	Cys-rich.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	chromatin binding|DNA binding			ovary(3)	3		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0784)		CCAGGGAAACGATTCTGACCT	0.483													9	57					0	0	1	0	0
WNK4	65266	broad.mit.edu	37	17	40933060	40933060	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40933060C>T	uc002ibj.2	+	1	365	c.344C>T	c.(343-345)CCT>CTT	p.P115L	WNK4_uc010wgx.1_5'UTR|WNK4_uc002ibk.1_5'Flank	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	115					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		GAGGGAGCCCCTGTGAAGGCT	0.716													7	19					0	0	1	0	0
AOC2	314	broad.mit.edu	37	17	40997973	40997973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:40997973C>T	uc002ibu.2	+	1	1365	c.1330C>T	c.(1330-1332)CAT>TAT	p.H444Y	AOC2_uc002ibt.2_Missense_Mutation_p.H444Y	NM_009590	NP_033720	O75106	AOC2_HUMAN	amine oxidase, copper containing 2 isoform b	444					catecholamine metabolic process|visual perception	cytoplasm|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|electron carrier activity|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			ovary(2)	2		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		CCTTCAAAATCATTTCTATGG	0.517													5	59					0	0	1	0	0
LOC90586	90586	broad.mit.edu	37	17	41019511	41019511	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:41019511C>T	uc002ibw.1	+	1	350	c.216C>T	c.(214-216)CGC>CGT	p.R72R	LOC90586_uc002ibx.2_5'Flank	NR_002773				Homo sapiens amine oxidase pseudogene mRNA, splice variant HLAO1.												0						CTGTGATGCGCTTTCTGACCC	0.637													8	154					0	0	1	0	0
G6PC	2538	broad.mit.edu	37	17	41063293	41063293	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:41063293C>T	uc002icb.1	+	5	1003	c.924C>T	c.(922-924)GTC>GTT	p.V308V	G6PC_uc010whf.1_3'UTR	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	308	Helical; (Potential).				gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		TCCTGCACGTCTTTGACTCCT	0.562									Glycogen_Storage_Disease_type_Ia				26	156					0	0	1	0	0
VAT1	10493	broad.mit.edu	37	17	41170058	41170058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:41170058G>A	uc002icm.1	-	3	881	c.761C>T	c.(760-762)CCT>CTT	p.P254L	VAT1_uc010cyw.1_Missense_Mutation_p.P120L|VAT1_uc010whk.1_Missense_Mutation_p.P186L	NM_006373	NP_006364	Q99536	VAT1_HUMAN	vesicle amine transport protein 1	254						cytoplasm|integral to membrane	oxidoreductase activity|zinc ion binding				0		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.156)		CCCACCTTTAGGGGAAATCTT	0.552													8	60					0	0	1	0	0
BRCA1	672	broad.mit.edu	37	17	41244925	41244925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:41244925G>A	uc002icq.2	-	10	2855	c.2623C>T	c.(2623-2625)CCA>TCA	p.P875S	BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Missense_Mutation_p.P804S|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Missense_Mutation_p.P828S|BRCA1_uc002ict.2_Missense_Mutation_p.P875S|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_Missense_Mutation_p.P875S|BRCA1_uc002ide.1_Missense_Mutation_p.P706S|BRCA1_uc010cyy.1_Missense_Mutation_p.P875S|BRCA1_uc010whs.1_Missense_Mutation_p.P875S|BRCA1_uc010cyz.2_Missense_Mutation_p.P828S|BRCA1_uc010cza.2_Missense_Mutation_p.P849S|BRCA1_uc010wht.1_Missense_Mutation_p.P579S	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	875					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		GCATTTCCTGGATTTGAAAAC	0.398			D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			5	46					0	0	1	0	0
MEOX1	4222	broad.mit.edu	37	17	41738630	41738630	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:41738630G>A	uc002idz.2	-	1	302	c.273C>T	c.(271-273)TCC>TCT	p.S91S	MEOX1_uc002iea.2_Silent_p.S91S|MEOX1_uc002ieb.2_5'UTR	NM_004527	NP_004518	P50221	MEOX1_HUMAN	mesenchyme homeobox 1 isoform 1	91						nucleus	sequence-specific DNA binding				0		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.0753)		GCCAGTTGGGGGACTGTGGGA	0.667													18	94					0	0	1	0	0
ATXN7L3	56970	broad.mit.edu	37	17	42273443	42273443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:42273443G>A	uc002iga.2	-	6	573	c.482C>T	c.(481-483)CCC>CTC	p.P161L	ATXN7L3_uc010wiv.1_5'Flank|ATXN7L3_uc002ifz.2_Missense_Mutation_p.P168L	NM_001098833	NP_001092303	Q14CW9	AT7L3_HUMAN	ataxin 7-like 3 isoform b	161					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	SAGA complex	ligand-dependent nuclear receptor transcription coactivator activity|metal ion binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.113)		AGGGGAATTGGGGTTCTGGAA	0.483													9	93					0	0	1	0	0
UBTF	7343	broad.mit.edu	37	17	42293036	42293036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:42293036G>A	uc002igb.2	-	4	527	c.460C>T	c.(460-462)CCG>TCG	p.P154S	UBTF_uc002igc.2_Missense_Mutation_p.P154S|UBTF_uc010czs.2_Missense_Mutation_p.P154S|UBTF_uc002igd.2_Missense_Mutation_p.P154S|UBTF_uc010czt.2_Missense_Mutation_p.P154S|UBTF_uc002ige.2_Missense_Mutation_p.P154S	NM_014233	NP_055048	P17480	UBF1_HUMAN	upstream binding transcription factor, RNA	154	HMG box 1.				positive regulation of transcription from RNA polymerase I promoter|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm	DNA binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.114)		TTCTTCTCCGGAAGCTCCTTG	0.562													16	91					0	0	1	0	0
SLC4A1	6521	broad.mit.edu	37	17	42333050	42333050	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:42333050G>A	uc002igf.3	-	14	1940	c.1791C>T	c.(1789-1791)TTC>TTT	p.F597F		NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	597	Involved in anion transport.|Cytoplasmic (Potential).|Membrane (anion exchange).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		CCTTGCCAGGGAAATAGGAGC	0.587													4	75					0	0	1	0	0
SLC4A1	6521	broad.mit.edu	37	17	42333147	42333148	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:42333147_42333148CC>TT	uc002igf.3	-	14	1842_1843	c.1693_1694GG>AA	c.(1693-1695)GGC>AAC	p.G565N		NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	565	Involved in anion transport.|Extracellular (Potential).|Membrane (anion exchange).		G -> A (in WU antigen).		bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		GGGCAGGGGGCCCTGAGGTTTG	0.525													15	145					0	0	1	0	0
SLC4A1	6521	broad.mit.edu	37	17	42335538	42335538	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:42335538C>T	uc002igf.3	-	11	1247	c.1098G>A	c.(1096-1098)GGG>GGA	p.G366G	SLC4A1_uc002igg.3_Silent_p.G366G	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	366	Cytoplasmic.				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		CATCTGGGCCCCCATTTAAGT	0.582													8	71					0	0	1	0	0
GPATCH8	23131	broad.mit.edu	37	17	42474955	42474955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:42474955G>A	uc002igw.1	-	8	4554	c.4490C>T	c.(4489-4491)CCC>CTC	p.P1497L	GPATCH8_uc002igv.1_Missense_Mutation_p.P1419L|GPATCH8_uc010wiz.1_Missense_Mutation_p.P1419L	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	1497						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		ATGGCTGGGGGGATGTTGCAG	0.587													8	34					0	0	1	0	0
GJC1	10052	broad.mit.edu	37	17	42882138	42882138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:42882138C>T	uc002ihj.2	-	2	1559	c.1048G>A	c.(1048-1050)GAT>AAT	p.D350N	GJC1_uc002ihk.2_Missense_Mutation_p.D350N|GJC1_uc002ihl.2_Missense_Mutation_p.D350N|GJC1_uc010czx.2_Missense_Mutation_p.D350N|GJC1_uc010czy.1_Missense_Mutation_p.D211N	NM_005497	NP_005488	P36383	CXG1_HUMAN	connexin 45	350	Cytoplasmic (Potential).				cellular membrane organization|gap junction assembly|muscle contraction|synaptic transmission|transport	connexon complex|integral to membrane					0		Prostate(33;0.0959)				ACTGCCAGATCCAAGCGTTCC	0.577													4	96					0	0	1	0	0
GJC1	10052	broad.mit.edu	37	17	42882354	42882354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:42882354G>A	uc002ihj.2	-	2	1343	c.832C>T	c.(832-834)CCT>TCT	p.P278S	GJC1_uc002ihk.2_Missense_Mutation_p.P278S|GJC1_uc002ihl.2_Missense_Mutation_p.P278S|GJC1_uc010czx.2_Missense_Mutation_p.P278S|GJC1_uc010czy.1_Missense_Mutation_p.P139S	NM_005497	NP_005488	P36383	CXG1_HUMAN	connexin 45	278	Cytoplasmic (Potential).				cellular membrane organization|gap junction assembly|muscle contraction|synaptic transmission|transport	connexon complex|integral to membrane					0		Prostate(33;0.0959)				CAAGTGAAAGGATAATTATAA	0.443													20	98					0	0	1	0	0
C17orf46	124783	broad.mit.edu	37	17	43333362	43333362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:43333362C>T	uc002iis.1	-	4	283	c.187G>A	c.(187-189)GAA>AAA	p.E63K	LOC100133991_uc010dah.2_Intron|C17orf46_uc010wjk.1_Missense_Mutation_p.E42K	NM_152343	NP_689556	Q96LK8	CQ046_HUMAN	hypothetical protein LOC124783	63										large_intestine(1)|ovary(1)	2						ATCTCCAGTtctgggtctggg	0.478													3	35					0	0	1	0	0
ARHGAP27	201176	broad.mit.edu	37	17	43481001	43481001	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:43481001G>A	uc002iix.2	-	8	1048	c.599C>T	c.(598-600)TCG>TTG	p.S200L	ARHGAP27_uc010dak.2_Missense_Mutation_p.S173L|ARHGAP27_uc010wjl.1_Missense_Mutation_p.S319L	NM_199282	NP_954976	Q6ZUM4	RHG27_HUMAN	Rho GTPase activating protein 27 isoform a	541	PH.				positive regulation of Cdc42 GTPase activity|receptor-mediated endocytosis|signal transduction	cytoplasm|membrane	Rac GTPase activator activity|SH3 domain binding				0	Renal(3;0.0405)					GCCTGCAGCCGAGGTCTTTGA	0.493													7	57					0	0	1	0	0
IMP5	162540	broad.mit.edu	37	17	43922718	43922718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:43922718C>T	uc010wka.1	+	1	446	c.446C>T	c.(445-447)CCT>CTT	p.P149L	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	149	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		CTCACCATCCCTGTGGCTATG	0.652													3	32					0	0	1	0	0
MAPT	4137	broad.mit.edu	37	17	44039743	44039743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:44039743C>T	uc002ijr.3	+	2	360	c.40C>T	c.(40-42)CAC>TAC	p.H14Y	MAPT_uc010dau.2_Missense_Mutation_p.H14Y|MAPT_uc002ijs.3_Missense_Mutation_p.H14Y|MAPT_uc002ijx.3_Missense_Mutation_p.H14Y|MAPT_uc002ijt.3_Missense_Mutation_p.H14Y|MAPT_uc002iju.3_Missense_Mutation_p.H14Y|MAPT_uc002ijv.3_Missense_Mutation_p.H14Y	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	14					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				GATGGAAGATCACGCTGGGAC	0.567													7	18					0	0	1	0	0
MAPT	4137	broad.mit.edu	37	17	44067273	44067273	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:44067273G>A	uc002ijr.3	+	8	1532	c.1212G>A	c.(1210-1212)TTG>TTA	p.L404L	MAPT_uc010dau.2_Silent_p.L404L|MAPT_uc002ijs.3_Intron|MAPT_uc002ijx.3_Intron|MAPT_uc002ijt.3_Intron|MAPT_uc002iju.3_Intron|MAPT_uc002ijv.3_Intron	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	404					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				CTAAAACCTTGAAAAATAGGC	0.463													34	190					0	0	1	0	0
WNT3	7473	broad.mit.edu	37	17	44851070	44851070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:44851070C>T	uc002ikv.2	-	2	405	c.286G>A	c.(286-288)GAC>AAC	p.D96N		NM_030753	NP_110380	P56703	WNT3_HUMAN	wingless-type MMTV integration site family,	96					canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|cellular response to retinoic acid|dorsal/ventral axis specification|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic pattern specification|head morphogenesis|hemopoietic stem cell proliferation|inner ear morphogenesis|limb bud formation|mammary gland epithelium development|mesoderm formation|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|positive regulation of cell proliferation|Spemann organizer formation at the anterior end of the primitive streak|Wnt receptor signaling pathway, calcium modulating pathway	early endosome|extracellular space|late endosome|membrane fraction|membrane raft|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|signal transducer activity			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			GCCAGGCTGTCATCTATGGTG	0.662													13	62					0	0	1	0	0
C17orf57	124989	broad.mit.edu	37	17	45456599	45456599	+	Missense_Mutation	SNP	G	A	A	rs144068587	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:45456599G>A	uc002iln.2	+	14	1973	c.1562G>A	c.(1561-1563)CGA>CAA	p.R521Q	C17orf57_uc002ilm.2_Missense_Mutation_p.R425Q|C17orf57_uc010daz.1_Missense_Mutation_p.R473Q	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	521	EF-hand 1.						calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						GCCAAGGAGCGAAGTTTTCCT	0.244													6	36					0	0	1	0	0
C17orf57	124989	broad.mit.edu	37	17	45507190	45507190	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:45507190A>G	uc002iln.2	+	24	2912	c.2501A>G	c.(2500-2502)CAG>CGG	p.Q834R	C17orf57_uc002ilm.2_Missense_Mutation_p.Q738R	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	834							calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						GCAGCTACACAGATACTCTTA	0.373													5	59					0	0	1	0	0
TBX21	30009	broad.mit.edu	37	17	45822518	45822518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:45822518G>A	uc002ilv.1	+	6	1605	c.1394G>A	c.(1393-1395)GGA>GAA	p.G465E		NM_013351	NP_037483	Q9UL17	TBX21_HUMAN	T-box 21	465					lymphocyte migration|multicellular organismal development|positive regulation of transcription, DNA-dependent|response to virus	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0						GGCTCAGAGGGACGGGGACCA	0.657													5	29					0	0	1	0	0
TBX21	30009	broad.mit.edu	37	17	45822521	45822521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:45822521G>A	uc002ilv.1	+	6	1608	c.1397G>A	c.(1396-1398)CGG>CAG	p.R466Q		NM_013351	NP_037483	Q9UL17	TBX21_HUMAN	T-box 21	466					lymphocyte migration|multicellular organismal development|positive regulation of transcription, DNA-dependent|response to virus	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0						TCAGAGGGACGGGGACCAGAG	0.657													5	28					0	0	1	0	0
OSBPL7	114881	broad.mit.edu	37	17	45895749	45895749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:45895749G>A	uc002ilx.1	-	7	687	c.484C>T	c.(484-486)CCT>TCT	p.P162S	OSBPL7_uc002ilw.1_5'Flank	NM_145798	NP_665741	Q9BZF2	OSBL7_HUMAN	oxysterol-binding protein-like protein 7	162					lipid transport		lipid binding				0						TGGGCACCAGGAACCTGTGGG	0.607													8	86					0	0	1	0	0
CDK5RAP3	80279	broad.mit.edu	37	17	46054169	46054169	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:46054169T>C	uc002imr.2	+	9	974	c.890T>C	c.(889-891)TTC>TCC	p.F297S	CDK5RAP3_uc010wlc.1_Missense_Mutation_p.F317S|CDK5RAP3_uc002imq.1_Missense_Mutation_p.F72S|CDK5RAP3_uc002imu.2_Missense_Mutation_p.F141S|CDK5RAP3_uc002ims.2_Missense_Mutation_p.F210S|CDK5RAP3_uc002imv.2_Missense_Mutation_p.F141S|CDK5RAP3_uc002imw.2_Missense_Mutation_p.F141S|CDK5RAP3_uc002imx.2_Missense_Mutation_p.F72S	NM_176096	NP_788276	Q96JB5	CK5P3_HUMAN	CDK5 regulatory subunit associated protein 3	297					brain development|regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation		neuronal Cdc2-like kinase binding				0						TGGGGCATCTTCCCGGAATCA	0.517													5	37					0	0	1	0	0
COPZ2	51226	broad.mit.edu	37	17	46110610	46110610	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:46110610G>A	uc002imy.2	-	8	340	c.327C>T	c.(325-327)TTC>TTT	p.F109F		NM_016429	NP_057513	Q9P299	COPZ2_HUMAN	coatomer protein complex, subunit zeta 2	109					intracellular protein transport|vesicle-mediated transport	cis-Golgi network|COPI vesicle coat					0						CCACGTATAGGAAGAGGTCAA	0.488													4	15					0	0	1	0	0
SNX11	29916	broad.mit.edu	37	17	46190722	46190722	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:46190722C>T	uc002inf.1	+	5	543	c.189C>T	c.(187-189)TTC>TTT	p.F63F	SNX11_uc010wlg.1_Silent_p.F55F|SNX11_uc010wlh.1_Silent_p.F55F|SNX11_uc010wli.1_Intron|SNX11_uc010wlj.1_5'UTR|SNX11_uc002ing.1_Silent_p.F63F|SNX11_uc002inh.1_Silent_p.F63F	NM_152244	NP_689450	Q9Y5W9	SNX11_HUMAN	sorting nexin 11	63	PX.				cell communication|protein transport	membrane	phosphatidylinositol binding				0						ACCGTGAGTTCGTGTGGCTGA	0.478													23	217					0	0	1	0	0
IGF2BP1	10642	broad.mit.edu	37	17	47122386	47122386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:47122386C>T	uc002iom.2	+	12	1688	c.1354C>T	c.(1354-1356)CGT>TGT	p.R452C	IGF2BP1_uc010dbj.2_Missense_Mutation_p.R313C	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	452	KH 3.|Necessary for interaction with ELAVL4 and binding to TAU mRNA (By similarity).				CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						CTCCAAAGTTCGTATGGTTAT	0.468													25	101					0	0	1	0	0
ABI3	51225	broad.mit.edu	37	17	47299475	47299475	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:47299475G>A	uc002iop.1	+	7	1323	c.825G>A	c.(823-825)CTG>CTA	p.L275L	ABI3_uc002ioq.1_Silent_p.L269L	NM_016428	NP_057512	Q9P2A4	ABI3_HUMAN	NESH protein isoform 1	275	Pro-rich.				cellular component movement|regulation of cell migration	cytoplasm|lamellipodium	protein binding				0			Epithelial(5;6.37e-06)|all cancers(6;6.36e-05)			CCCTGCCACTGGACCTGCCTC	0.602										HNSCC(55;0.14)			11	97					0	0	1	0	0
SAMD14	201191	broad.mit.edu	37	17	48193050	48193050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48193050G>A	uc002iqg.2	-	7	999	c.700C>T	c.(700-702)CCG>TCG	p.P234S	SAMD14_uc002iqd.2_Missense_Mutation_p.P17S|SAMD14_uc002iqe.2_Missense_Mutation_p.P17S|SAMD14_uc002iqf.2_Missense_Mutation_p.P234S	NM_174920	NP_777580	Q8IZD0	SAM14_HUMAN	sterile alpha motif domain containing 14	234											0						GGCAGGAACGGGGAGCCCCCT	0.642													5	160					0	0	1	0	0
PPP1R9B	84687	broad.mit.edu	37	17	48212929	48212929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48212929G>A	uc002iqh.3	-	11	2392	c.2389C>T	c.(2389-2391)CTC>TTC	p.L797F		NM_032595	NP_115984	Q96SB3	NEB2_HUMAN	protein phosphatase 1, regulatory subunit 9B	795	Potential.|Interacts with TGN38 (By similarity).				cell cycle arrest|cell differentiation|cell migration|filopodium assembly|negative regulation of cell growth|nervous system development|regulation of cell growth by extracellular stimulus|regulation of cell proliferation|regulation of exit from mitosis|RNA splicing	adherens junction|cytoskeleton|dendritic spine|filopodium|lamellipodium|nucleoplasm|protein phosphatase type 1 complex|ruffle membrane|synapse	actin binding|protein phosphatase 1 binding|protein phosphatase inhibitor activity				0						TTGTCCAGGAGCTTGTCCATC	0.637													4	13					0	0	1	0	0
SGCA	6442	broad.mit.edu	37	17	48247506	48247506	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48247506G>A	uc002iqi.2	+	7	786	c.750G>A	c.(748-750)GTG>GTA	p.V250V	SGCA_uc002iqj.2_Intron|SGCA_uc010wmi.1_Intron|uc010dbn.1_5'Flank	NM_000023	NP_000014	Q16586	SGCA_HUMAN	sarcoglycan, alpha isoform 1 precursor	250	Extracellular (Potential).				muscle contraction|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma	calcium ion binding			ovary(2)	2						CTGTGCAGGTGGATAAGTCAG	0.632													5	23					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48262926	48262926	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48262926G>A	uc002iqm.2	-	51	4458	c.4332C>T	c.(4330-4332)CCC>CCT	p.P1444P		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	1444	Fibrillar collagen NC1.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	CAACGTCCAAGGGGGCCACAT	0.607			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						15	75					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48264261	48264261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48264261G>A	uc002iqm.2	-	48	3680	c.3554C>T	c.(3553-3555)CCT>CTT	p.P1185L		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	1185	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	GGGACCAGGAGGTCCAGGAGG	0.647			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						10	32					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48266794	48266794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48266794G>A	uc002iqm.2	-	39	2899	c.2773C>T	c.(2773-2775)CCT>TCT	p.P925S		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	925	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	GGGGGACCAGGGGGACCAACT	0.647			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						10	77					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48271366	48271366	+	Missense_Mutation	SNP	C	T	T	rs72648363		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48271366C>T	uc002iqm.2	-	25	1831	c.1705G>A	c.(1705-1707)GGC>AGC	p.G569S		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	569	Triple-helical region.		G -> R (in OI2A).		axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	CCAGGTGGGCCTGGGGGTCCG	0.587			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						5	67					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48277183	48277183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48277183C>T	uc002iqm.2	-	2	355	c.229G>A	c.(229-231)GAG>AAG	p.E77K		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	77	VWFC.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	TTCTTGGTCTCGTCACAGATC	0.607			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						15	136					0	0	1	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48602350	48602350	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48602350C>T	uc010wmr.1	+	13	2039	c.1877C>T	c.(1876-1878)ACC>ATC	p.T626I	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	589					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			GCCTATCTCACCGAGGAAGAC	0.632													16	71					0	0	1	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48606530	48606530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48606530C>T	uc010wmr.1	+	18	2996	c.2834C>T	c.(2833-2835)ACC>ATC	p.T945I	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	908					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			GGGAAATACACCCAGAGCCTG	0.532													10	33					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48680181	48680181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48680181G>A	uc002irk.1	+	20	4288	c.3916G>A	c.(3916-3918)GAA>AAA	p.E1306K	CACNA1G_uc002iri.1_Missense_Mutation_p.E1306K|CACNA1G_uc002irj.1_Missense_Mutation_p.E1283K|CACNA1G_uc002irl.1_Missense_Mutation_p.E1283K|CACNA1G_uc002irm.1_Missense_Mutation_p.E1283K|CACNA1G_uc002irn.1_Missense_Mutation_p.E1283K|CACNA1G_uc002iro.1_Missense_Mutation_p.E1283K|CACNA1G_uc002irp.1_Missense_Mutation_p.E1306K|CACNA1G_uc002irq.1_Missense_Mutation_p.E1283K|CACNA1G_uc002irr.1_Missense_Mutation_p.E1306K|CACNA1G_uc002irs.1_Missense_Mutation_p.E1306K|CACNA1G_uc002irt.1_Missense_Mutation_p.E1306K|CACNA1G_uc002irv.1_Missense_Mutation_p.E1306K|CACNA1G_uc002irw.1_Missense_Mutation_p.E1283K|CACNA1G_uc002iru.1_Missense_Mutation_p.E1283K|CACNA1G_uc002irx.1_Missense_Mutation_p.E1219K|CACNA1G_uc002iry.1_Missense_Mutation_p.E1219K|CACNA1G_uc002irz.1_Missense_Mutation_p.E1219K|CACNA1G_uc002isa.1_Missense_Mutation_p.E1219K|CACNA1G_uc002isb.1_Missense_Mutation_p.E1219K|CACNA1G_uc002isc.1_Missense_Mutation_p.E1219K|CACNA1G_uc002isd.1_Missense_Mutation_p.E1219K|CACNA1G_uc002ise.1_Missense_Mutation_p.E1219K|CACNA1G_uc002isf.1_Missense_Mutation_p.E1219K|CACNA1G_uc002isg.1_Missense_Mutation_p.E1219K|CACNA1G_uc002ish.1_Missense_Mutation_p.E1219K|CACNA1G_uc002isi.1_Missense_Mutation_p.E1196K|CACNA1G_uc002isj.2_Missense_Mutation_p.E30K	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1306	Extracellular (Potential).|III.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	TCTCTTGCAGGAACGCATCTT	0.552													4	37					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48680201	48680201	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48680201C>T	uc002irk.1	+	20	4308	c.3936C>T	c.(3934-3936)CTC>CTT	p.L1312L	CACNA1G_uc002iri.1_Silent_p.L1312L|CACNA1G_uc002irj.1_Silent_p.L1289L|CACNA1G_uc002irl.1_Silent_p.L1289L|CACNA1G_uc002irm.1_Silent_p.L1289L|CACNA1G_uc002irn.1_Silent_p.L1289L|CACNA1G_uc002iro.1_Silent_p.L1289L|CACNA1G_uc002irp.1_Silent_p.L1312L|CACNA1G_uc002irq.1_Silent_p.L1289L|CACNA1G_uc002irr.1_Silent_p.L1312L|CACNA1G_uc002irs.1_Silent_p.L1312L|CACNA1G_uc002irt.1_Silent_p.L1312L|CACNA1G_uc002irv.1_Silent_p.L1312L|CACNA1G_uc002irw.1_Silent_p.L1289L|CACNA1G_uc002iru.1_Silent_p.L1289L|CACNA1G_uc002irx.1_Silent_p.L1225L|CACNA1G_uc002iry.1_Silent_p.L1225L|CACNA1G_uc002irz.1_Silent_p.L1225L|CACNA1G_uc002isa.1_Silent_p.L1225L|CACNA1G_uc002isb.1_Silent_p.L1225L|CACNA1G_uc002isc.1_Silent_p.L1225L|CACNA1G_uc002isd.1_Silent_p.L1225L|CACNA1G_uc002ise.1_Silent_p.L1225L|CACNA1G_uc002isf.1_Silent_p.L1225L|CACNA1G_uc002isg.1_Silent_p.L1225L|CACNA1G_uc002ish.1_Silent_p.L1225L|CACNA1G_uc002isi.1_Silent_p.L1202L|CACNA1G_uc002isj.2_Silent_p.L36L	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1312	Extracellular (Potential).|III.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	TCCTGACCCTCTCCAATTACA	0.587													4	42					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48704023	48704023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48704023C>T	uc002irk.1	+	38	7417	c.7045C>T	c.(7045-7047)CCT>TCT	p.P2349S	CACNA1G_uc002irj.1_Missense_Mutation_p.P2143S|CACNA1G_uc002irl.1_Missense_Mutation_p.P2233S|CACNA1G_uc002irm.1_Missense_Mutation_p.P2270S|CACNA1G_uc002irn.1_Missense_Mutation_p.P2215S|CACNA1G_uc002iro.1_Missense_Mutation_p.P2222S|CACNA1G_uc002irp.1_Missense_Mutation_p.P2304S|CACNA1G_uc002irq.1_Missense_Mutation_p.P2326S|CACNA1G_uc002irr.1_Missense_Mutation_p.P2256S|CACNA1G_uc002irs.1_Missense_Mutation_p.P2293S|CACNA1G_uc002irt.1_Missense_Mutation_p.P2238S|CACNA1G_uc002irv.1_Missense_Mutation_p.P2245S|CACNA1G_uc002irw.1_Missense_Mutation_p.P2278S|CACNA1G_uc002iru.1_Missense_Mutation_p.P2315S|CACNA1G_uc002irx.1_Missense_Mutation_p.P2090S|CACNA1G_uc002iry.1_Missense_Mutation_p.P2079S|CACNA1G_uc002irz.1_Missense_Mutation_p.P2162S|CACNA1G_uc002isa.1_Missense_Mutation_p.P2135S|CACNA1G_uc002isb.1_Missense_Mutation_p.P2176S|CACNA1G_uc002isc.1_Missense_Mutation_p.P2251S|CACNA1G_uc002isd.1_Missense_Mutation_p.P2144S|CACNA1G_uc002ise.1_Missense_Mutation_p.P2172S|CACNA1G_uc002isf.1_Missense_Mutation_p.P2199S|CACNA1G_uc002isg.1_Missense_Mutation_p.P2117S|CACNA1G_uc002ish.1_Missense_Mutation_p.P2124S|CACNA1G_uc002isi.1_Missense_Mutation_p.P2112S	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	2349	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CTCTGGCCCCCCTGACAGCAT	0.657											OREG0024569	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	52					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48738468	48738468	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48738468C>G	uc002isl.2	+	8	1071	c.991C>G	c.(991-993)CTG>GTG	p.L331V	ABCC3_uc002isk.3_Missense_Mutation_p.L331V|ABCC3_uc002ism.2_5'Flank	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	331	Extracellular (By similarity).|ABC transmembrane type-1 1.				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	CAATCCACAGCTGCTCAGGTC	0.552													3	23					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48757187	48757187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:48757187G>A	uc002isl.2	+	26	3814	c.3734G>A	c.(3733-3735)CGA>CAA	p.R1245Q	ABCC3_uc002isn.2_5'UTR	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	1245	Cytoplasmic (By similarity).|ABC transmembrane type-1 2.				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	TGGATGATACGAATGATGTCA	0.527													5	59					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51901193	51901193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:51901193G>A	uc002iua.2	+	1	955	c.799G>A	c.(799-801)GAC>AAC	p.D267N	uc010wna.1_Intron	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	267	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CTTCTGCTTCGACCATGCCTT	0.557													5	39					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51901748	51901748	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:51901748G>A	uc002iua.2	+	1	1510	c.1354G>A	c.(1354-1356)GAA>AAA	p.E452K	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	452	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						AGCTGGGAATGAAAGAGGAGC	0.488													4	27					0	0	1	0	0
TOM1L1	10040	broad.mit.edu	37	17	52992013	52992013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:52992013C>T	uc002iud.2	+	6	687	c.512C>T	c.(511-513)TCA>TTA	p.S171L	TOM1L1_uc002iub.2_Missense_Mutation_p.S136L|TOM1L1_uc002iuc.2_Missense_Mutation_p.S171L|TOM1L1_uc010dca.1_Missense_Mutation_p.S171L|TOM1L1_uc010wnb.1_Missense_Mutation_p.S164L|TOM1L1_uc010wnc.1_Missense_Mutation_p.S94L|TOM1L1_uc010dbz.2_Missense_Mutation_p.S94L|TOM1L1_uc010wnd.1_Intron|TOM1L1_uc010dcb.1_RNA	NM_005486	NP_005477	O75674	TM1L1_HUMAN	target of myb1-like 1	171					intracellular protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	cytosol|endosome membrane|Golgi stack|lysosome	SH3 domain binding|ubiquitin binding			ovary(1)	1						GCTCAAATCTCATCAAATCCT	0.393													4	54					0	0	1	0	0
HLF	3131	broad.mit.edu	37	17	53392718	53392718	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:53392718C>T	uc002iug.1	+	3	1107	c.582C>T	c.(580-582)GAC>GAT	p.D194D	HLF_uc010dce.1_Silent_p.D109D|HLF_uc002iuh.2_Silent_p.D109D|HLF_uc010wni.1_Silent_p.D141D	NM_002126	NP_002117	Q16534	HLF_HUMAN	hepatic leukemia factor	194	Pro-rich (proline/acidic region (PAR)).				multicellular organismal development|rhythmic process|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						AAATGTTTGACCCTCGCAAAC	0.512			T	TCF3	ALL								17	77					0	0	1	0	0
TMEM100	55273	broad.mit.edu	37	17	53798418	53798418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:53798418G>A	uc002iuj.3	-	2	325	c.14C>T	c.(13-15)CCC>CTC	p.P5L	TMEM100_uc002iuk.3_Missense_Mutation_p.P5L	NM_018286	NP_060756	Q9NV29	TM100_HUMAN	transmembrane protein 100	5						integral to membrane					0						CTCCTTGATGGGCTCTTCAGT	0.502													4	29					0	0	1	0	0
SCPEP1	59342	broad.mit.edu	37	17	55058509	55058509	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:55058509A>T	uc002iuv.3	+	2	196	c.143A>T	c.(142-144)GAT>GTT	p.D48V	SCPEP1_uc010dcl.2_RNA|SCPEP1_uc010wnk.1_5'UTR	NM_021626	NP_067639	Q9HB40	RISC_HUMAN	serine carboxypeptidase 1 precursor	48					proteolysis	extracellular region	serine-type carboxypeptidase activity			skin(1)	1	Breast(9;2.86e-08)					GTCCGCAAGGATGCCTACATG	0.502													5	34					0	0	1	0	0
AKAP1	8165	broad.mit.edu	37	17	55183711	55183711	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:55183711C>T	uc002iux.2	+	2	1117	c.886C>T	c.(886-888)CAG>TAG	p.Q296*	AKAP1_uc010wnl.1_Nonsense_Mutation_p.Q296*|AKAP1_uc002iuy.2_RNA|AKAP1_uc010dcm.2_Nonsense_Mutation_p.Q296*	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	296					blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					CGCCAAAGCCCAGGATAGAGG	0.547													9	93					0	0	1	0	0
CUEDC1	404093	broad.mit.edu	37	17	55956990	55956990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:55956990G>A	uc002ivd.1	-	3	1165	c.446C>T	c.(445-447)CCC>CTC	p.P149L	CUEDC1_uc002ive.1_Missense_Mutation_p.P149L	NM_017949	NP_060419	Q9NWM3	CUED1_HUMAN	CUE domain-containing 1	149	Pro-rich.									skin(2)	2						CGGAGTCGGGGGAGCCAGAGG	0.597													19	86					0	0	1	0	0
OR4D1	26689	broad.mit.edu	37	17	56232607	56232607	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56232607C>T	uc010wno.1	+	1	93	c.93C>T	c.(91-93)TTC>TTT	p.F31F	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCCTTCTGTTCCTGTTAGTCT	0.458													24	130					0	0	1	0	0
OR4D1	26689	broad.mit.edu	37	17	56232932	56232932	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56232932T>G	uc010wno.1	+	1	418	c.418T>G	c.(418-420)TTG>GTG	p.L140V	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	140	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GAACACTCAATTGTGTGTGGG	0.542													4	40					0	0	1	0	0
OR4D1	26689	broad.mit.edu	37	17	56232968	56232968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56232968G>A	uc010wno.1	+	1	454	c.454G>A	c.(454-456)GGC>AGC	p.G152S	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTGGGTGGGGGGCTTTGTCCA	0.537													5	45					0	0	1	0	0
LPO	4025	broad.mit.edu	37	17	56320356	56320356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56320356C>T	uc002ivt.2	+	2	332	c.16C>T	c.(16-18)CAT>TAT	p.H6Y	LPO_uc010dco.2_Missense_Mutation_p.H6Y|LPO_uc010wnr.1_Missense_Mutation_p.H6Y|LPO_uc010wns.1_5'UTR|LPO_uc010dcp.2_Missense_Mutation_p.H6Y	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	6					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						GGTCCTTCTCCATCTCCCAGC	0.483													7	187					0	0	1	0	0
LPO	4025	broad.mit.edu	37	17	56332314	56332314	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56332314C>T	uc002ivt.2	+	9	1564	c.1248C>T	c.(1246-1248)ATC>ATT	p.I416I	LPO_uc010wns.1_Silent_p.I357I|LPO_uc010dcp.2_Silent_p.I333I|LPO_uc010dcq.2_Silent_p.I87I|LPO_uc010dcr.2_5'UTR	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	416					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						CCCGGAAAATCCTGGGAGCCT	0.602													25	73					0	0	1	0	0
LPO	4025	broad.mit.edu	37	17	56345271	56345271	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56345271G>A	uc002ivt.2	+	13	2371	c.2055G>A	c.(2053-2055)TGG>TGA	p.W685*	LPO_uc010wns.1_Nonsense_Mutation_p.W626*|LPO_uc010dcp.2_Nonsense_Mutation_p.W602*|LPO_uc010dcq.2_Nonsense_Mutation_p.W356*|LPO_uc010dcr.2_Nonsense_Mutation_p.W248*	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	685					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						ACCCATTCTGGGCCAACAGCT	0.562													15	76					0	0	1	0	0
MPO	4353	broad.mit.edu	37	17	56350866	56350866	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56350866G>A	uc002ivu.1	-	9	1707	c.1530C>T	c.(1528-1530)TTC>TTT	p.F510F		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	510					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	TGTCCAGGCGGAACATGAAGG	0.592													10	157					0	0	1	0	0
MPO	4353	broad.mit.edu	37	17	56355349	56355349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56355349G>A	uc002ivu.1	-	7	1220	c.1043C>T	c.(1042-1044)CCC>CTC	p.P348L		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	348					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	CCTGGCCAGGGGCTCCTCGCT	0.647													4	43					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56382491	56382491	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56382491G>A	uc002ivx.3	-	30	6346	c.5475C>T	c.(5473-5475)TTC>TTT	p.F1825F	BZRAP1_uc002ivv.2_Silent_p.F55F|BZRAP1_uc002ivw.2_Silent_p.F57F|BZRAP1_uc010dcs.2_Silent_p.F1765F|BZRAP1_uc010wnt.1_Silent_p.F1816F	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1825	SH3 3.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GGCCCTCCAGGAAGTTGGATG	0.632													4	54					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56382511	56382511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56382511C>T	uc002ivx.3	-	30	6326	c.5455G>A	c.(5455-5457)GGC>AGC	p.G1819S	BZRAP1_uc002ivv.2_Missense_Mutation_p.G49S|BZRAP1_uc002ivw.2_Missense_Mutation_p.G51S|BZRAP1_uc010dcs.2_Missense_Mutation_p.G1759S|BZRAP1_uc010wnt.1_Missense_Mutation_p.G1810S	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1819	SH3 3.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GGAACCAGGCCCCTTTGTCCA	0.622													7	44					0	0	1	0	0
BZRAP1	9256	broad.mit.edu	37	17	56386398	56386398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56386398G>A	uc002ivx.3	-	22	5106	c.4235C>T	c.(4234-4236)CCT>CTT	p.P1412L	BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Missense_Mutation_p.P1352L|BZRAP1_uc010wnt.1_Missense_Mutation_p.P1412L	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1412						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GGGCTTCTCAGGGGAGCCCCC	0.647													19	86					0	0	1	0	0
MTMR4	9110	broad.mit.edu	37	17	56572533	56572533	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56572533G>A	uc002iwj.2	-	16	3080	c.2970C>T	c.(2968-2970)GTC>GTT	p.V990V		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	990						cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TTGTGCTAGAGACTTGCTTTG	0.498													22	140					0	0	1	0	0
C17orf47	284083	broad.mit.edu	37	17	56620080	56620080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56620080C>T	uc002iwq.1	-	1	1604	c.1468G>A	c.(1468-1470)GAG>AAG	p.E490K	SEPT4_uc010wnx.1_5'Flank|SEPT4_uc010wny.1_5'Flank	NM_001038704	NP_001033793	Q8NEP4	CQ047_HUMAN	hypothetical protein LOC284083	490										breast(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CTTGGAAACTCCTTTGGTGGT	0.473													11	272					0	0	1	0	0
C17orf47	284083	broad.mit.edu	37	17	56620655	56620655	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56620655T>C	uc002iwq.1	-	1	1029	c.893A>G	c.(892-894)AAG>AGG	p.K298R	SEPT4_uc010wnx.1_5'Flank|SEPT4_uc010wny.1_5'Flank	NM_001038704	NP_001033793	Q8NEP4	CQ047_HUMAN	hypothetical protein LOC284083	298										breast(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GGCAGAATACTTATGAAGAGA	0.478													3	59					0	0	1	0	0
TEX14	56155	broad.mit.edu	37	17	56650616	56650616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:56650616G>A	uc010dcz.1	-	24	3693	c.3575C>T	c.(3574-3576)TCT>TTT	p.S1192F	TEX14_uc002iwr.1_Missense_Mutation_p.S1186F|TEX14_uc002iws.1_Missense_Mutation_p.S1146F|TEX14_uc010dda.1_Missense_Mutation_p.S926F	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	1192						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TTCCTTAAAAGAGCTGTCTGG	0.413													23	200					0	0	1	0	0
C17orf71	55181	broad.mit.edu	37	17	57290128	57290128	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:57290128C>T	uc002ixi.2	+	3	1986	c.1944C>T	c.(1942-1944)ATC>ATT	p.I648I		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	648					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					TGGATCATATCAATTTCCCAG	0.343													22	203					0	0	1	0	0
C17orf71	55181	broad.mit.edu	37	17	57290769	57290769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:57290769C>T	uc002ixi.2	+	3	2627	c.2585C>T	c.(2584-2586)TCT>TTT	p.S862F		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	862					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					TTCATGTGCTCTGGGCCTGAC	0.453													18	118					0	0	1	0	0
HEATR6	63897	broad.mit.edu	37	17	58137347	58137347	+	Silent	SNP	G	A	A	rs61752323		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:58137347G>A	uc002iyk.1	-	10	1544	c.1527C>T	c.(1525-1527)TCC>TCT	p.S509S	HEATR6_uc010ddk.1_Silent_p.S48S|HEATR6_uc010wos.1_Silent_p.S341S	NM_022070	NP_071353	Q6AI08	HEAT6_HUMAN	HEAT repeat containing 6	509							binding			ovary(1)|skin(1)	2	all_cancers(5;2.25e-13)|Breast(5;4.84e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		BRCA - Breast invasive adenocarcinoma(1;5.93e-19)|Epithelial(12;7.59e-12)|all cancers(12;1.26e-10)			CGATCATTACGGAGAAGGGGG	0.453													23	96					0	0	1	0	0
TBX2	6909	broad.mit.edu	37	17	59485447	59485447	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:59485447C>T	uc010wox.1	+	7	2000	c.1719C>T	c.(1717-1719)TTC>TTT	p.F573F	TBX2_uc002ize.2_3'UTR|TBX2_uc002izg.2_Silent_p.F419F	NM_005994	NP_005985	Q13207	TBX2_HUMAN	T-box 2	573					cell aging|positive regulation of cell proliferation		sequence-specific DNA binding				0						GAGGCCTCTTCCCCTACCCCT	0.343													4	65					0	0	1	0	0
INTS2	57508	broad.mit.edu	37	17	59945296	59945296	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:59945296G>A	uc002izn.2	-	24	3419	c.3343C>T	c.(3343-3345)CCT>TCT	p.P1115S	INTS2_uc002izm.2_Missense_Mutation_p.P1107S	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	1115					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						TACAATGGAGGAAATGCTCGA	0.378													5	44					0	0	1	0	0
MED13	9969	broad.mit.edu	37	17	60042398	60042398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:60042398G>A	uc002izo.2	-	20	4890	c.4813C>T	c.(4813-4815)CCC>TCC	p.P1605S		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	1605					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						GGCTGAGTGGGAAGTGAAGAT	0.388													5	21					0	0	1	0	0
MED13	9969	broad.mit.edu	37	17	60042544	60042544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:60042544G>A	uc002izo.2	-	20	4744	c.4667C>T	c.(4666-4668)CCT>CTT	p.P1556L		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	1556	Ser-rich.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						TGGAAACGAAGGTAGTTTATT	0.428													13	93					0	0	1	0	0
MED13	9969	broad.mit.edu	37	17	60059940	60059940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:60059940G>A	uc002izo.2	-	16	3501	c.3424C>T	c.(3424-3426)CTT>TTT	p.L1142F		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	1142					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						TCATCTTCAAGAAATAATCCT	0.403													4	108					0	0	1	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60349337	60349337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:60349337C>T	uc002izq.2	-	5	323	c.211G>A	c.(211-213)GAG>AAG	p.E71K	TBC1D3P2_uc010woz.1_RNA|uc010wpa.1_5'Flank					SubName: Full=Putative uncharacterized protein TBC1D3E;												0						CGGCTGATCTCCCGCCGAATT	0.557													27	417					0	0	1	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60351235	60351235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:60351235C>T	uc002izq.2	-	3	192	c.80G>A	c.(79-81)CGA>CAA	p.R27Q	TBC1D3P2_uc010woz.1_RNA					SubName: Full=Putative uncharacterized protein TBC1D3E;												0						CAGCCCAGCTCGGTGTCCCTG	0.602													27	269					0	0	1	0	0
EFCAB3	146779	broad.mit.edu	37	17	60484011	60484011	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:60484011T>G	uc002izu.1	+	7	737	c.659T>G	c.(658-660)TTT>TGT	p.F220C	EFCAB3_uc010wpc.1_Missense_Mutation_p.F272C	NM_173503	NP_775774	Q8N7B9	EFCB3_HUMAN	EF-hand calcium binding domain 3 isoform b	220							calcium ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(2;2.27e-11)			AAGGATTTATTTAAATTTCTT	0.388													5	13					0	0	1	0	0
EFCAB3	146779	broad.mit.edu	37	17	60493519	60493519	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:60493519G>A	uc002izu.1	+	10	1224	c.1146G>A	c.(1144-1146)TGG>TGA	p.W382*	EFCAB3_uc010wpc.1_Nonsense_Mutation_p.W434*	NM_173503	NP_775774	Q8N7B9	EFCB3_HUMAN	EF-hand calcium binding domain 3 isoform b	382							calcium ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(2;2.27e-11)			CATGGTCCTGGAATGTTTGCC	0.408													4	70					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60743815	60743815	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:60743815G>A	uc002jad.2	+	4	1097	c.695_splice	c.e4-1	p.S232_splice	MRC2_uc002jac.2_Splice_Site_p.S232_splice	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2						endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CGTGGTGGCAGGTAACGACTG	0.632													9	68					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60757548	60757548	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:60757548C>T	uc002jad.2	+	15	2718	c.2316C>T	c.(2314-2316)TTC>TTT	p.F772F	MRC2_uc010ddq.1_RNA|MRC2_uc002jae.2_5'Flank|MRC2_uc002jaf.2_5'Flank	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	772	Extracellular (Potential).|C-type lectin 4.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						ACCACAATTTCGACCGGAGCC	0.647													6	55					0	0	1	0	0
TANC2	26115	broad.mit.edu	37	17	61432354	61432354	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:61432354C>T	uc002jal.3	+	12	1986	c.1963C>T	c.(1963-1965)CTA>TTA	p.L655L	TANC2_uc010wpe.1_Silent_p.L565L|TANC2_uc002jam.1_Silent_p.L22L	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	655							binding			ovary(2)	2						AGGGTCCTATCTATATCTGAA	0.383													6	87					0	0	1	0	0
TANC2	26115	broad.mit.edu	37	17	61495703	61495703	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:61495703C>T	uc002jal.3	+	24	3974	c.3951C>T	c.(3949-3951)GCC>GCT	p.A1317A	TANC2_uc010wpe.1_Intron|TANC2_uc002jao.3_Silent_p.A428A	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1317	TPR 2.						binding			ovary(2)	2						CTACTAAGGCCCTGGAGCTGA	0.443													7	16					0	0	1	0	0
TANC2	26115	broad.mit.edu	37	17	61497682	61497682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:61497682C>T	uc002jal.3	+	25	4362	c.4339C>T	c.(4339-4341)CCC>TCC	p.P1447S	TANC2_uc010wpe.1_3'UTR|TANC2_uc002jao.3_Missense_Mutation_p.P558S	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1447							binding			ovary(2)	2						ACCCTCCTCTCCCCCGCATCG	0.582													4	53					0	0	1	0	0
TANC2	26115	broad.mit.edu	37	17	61498624	61498624	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:61498624G>T	uc002jal.3	+	25	5304	c.5281G>T	c.(5281-5283)GAA>TAA	p.E1761*	TANC2_uc010wpe.1_3'UTR|TANC2_uc002jao.3_Nonsense_Mutation_p.E872*	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1761							binding			ovary(2)	2						CAACCCTAACGAAATCAAACC	0.507													18	116					2.37509e-13	2.41071e-13	1	1	0
ACE	1636	broad.mit.edu	37	17	61558518	61558518	+	Missense_Mutation	SNP	A	G	G	rs141186617		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:61558518A>G	uc002jau.1	+	6	936	c.914A>G	c.(913-915)AAC>AGC	p.N305S	ACE_uc010wpi.1_Missense_Mutation_p.N305S|ACE_uc010ddu.1_Missense_Mutation_p.N122S	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	305	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GACAAGCCCAACCTCGATGTC	0.577													9	91					0	0	1	0	0
ACE	1636	broad.mit.edu	37	17	61568707	61568707	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:61568707C>T	uc002jau.1	+	19	2899	c.2877C>T	c.(2875-2877)GCC>GCT	p.A959A	ACE_uc002jav.1_Silent_p.A385A|ACE_uc010ddv.1_Silent_p.A186A|ACE_uc010wpj.1_Silent_p.A385A|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Silent_p.A205A	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	959	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	TCTGCCACGCCTCGGCCTGGG	0.607													10	85					0	0	1	0	0
ACE	1636	broad.mit.edu	37	17	61568713	61568713	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:61568713C>T	uc002jau.1	+	19	2905	c.2883C>T	c.(2881-2883)GCC>GCT	p.A961A	ACE_uc002jav.1_Silent_p.A387A|ACE_uc010ddv.1_Silent_p.A188A|ACE_uc010wpj.1_Silent_p.A387A|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Silent_p.A207A	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	961	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	ACGCCTCGGCCTGGGACTTCT	0.622													10	86					0	0	1	0	0
ACE	1636	broad.mit.edu	37	17	61570796	61570796	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:61570796G>A	uc002jau.1	+	20	2935	c.2913_splice	c.e20-1	p.R971_splice	ACE_uc002jav.1_Splice_Site_p.R397_splice|ACE_uc010ddv.1_Splice_Site_p.R198_splice|ACE_uc010wpj.1_Splice_Site_p.R397_splice|ACE_uc002jaw.1_Splice_Site|ACE_uc010wpk.1_Splice_Site_p.R217_splice	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1						arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	ACTATTCCTAGGATCAAGCAG	0.562													13	85					0	0	1	0	0
KCNH6	81033	broad.mit.edu	37	17	61601593	61601593	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:61601593T>A	uc002jay.2	+	2	250	c.170T>A	c.(169-171)GTG>GAG	p.V57E	KCNH6_uc002jax.1_Missense_Mutation_p.V57E|KCNH6_uc010wpl.1_5'UTR|KCNH6_uc010wpm.1_Missense_Mutation_p.V57E|KCNH6_uc002jaz.1_Missense_Mutation_p.V57E	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	57	PAS.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	TACTCCCGAGTGGAGGTGATG	0.612													10	164					0	0	1	0	0
KCNH6	81033	broad.mit.edu	37	17	61613365	61613365	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:61613365C>T	uc002jay.2	+	6	1517	c.1437C>T	c.(1435-1437)TTC>TTT	p.F479F	KCNH6_uc002jax.1_Silent_p.F479F|KCNH6_uc010wpl.1_Silent_p.F356F|KCNH6_uc010wpm.1_Silent_p.F479F|KCNH6_uc002jaz.1_Silent_p.F426F	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	479	Selectivity filter (By similarity).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	GCGTGGGCTTCGGCAATGTCT	0.597													8	66					0	0	1	0	0
GH2	2689	broad.mit.edu	37	17	61957840	61957840	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:61957840G>A	uc002jco.1	-	5	557	c.495C>T	c.(493-495)TTC>TTT	p.F165F	GH2_uc002jcj.2_Intron|CSH2_uc002jck.2_Intron|GH2_uc002jcl.1_Nonsense_Mutation_p.Q250*|GH2_uc002jcm.1_Missense_Mutation_p.S164L|GH2_uc002jcn.1_Silent_p.F150F	NM_002059	NP_002050	P01242	SOM2_HUMAN	growth hormone 2 isoform 1	165						extracellular region	hormone activity			upper_aerodigestive_tract(2)|pancreas(1)	3						AGGACTGATTGAAGATCTGCC	0.542													7	81					0	0	1	0	0
CSHL1	1444	broad.mit.edu	37	17	61988171	61988171	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:61988171G>A	uc002jda.1	-	2	186	c.124C>T	c.(124-126)CAA>TAA	p.Q42*	CSHL1_uc002jcz.1_Nonsense_Mutation_p.Q42*|CSHL1_uc002jdb.1_Intron|CSHL1_uc002jdc.1_Intron|CSHL1_uc002jdd.1_Intron|CSHL1_uc002jde.2_Nonsense_Mutation_p.Q70*|CSHL1_uc002jdf.2_Intron|CSHL1_uc002jdg.2_Nonsense_Mutation_p.Q42*|CSHL1_uc002jdh.2_Intron	NM_022579	NP_072101	Q14406	CSHL_HUMAN	chorionic somatomammotropin hormone-like 1	42						extracellular region	hormone activity|metal ion binding				0						CGATGGGCTTGGAGCATAGCC	0.572													8	139					0	0	1	0	0
CD79B	974	broad.mit.edu	37	17	62007708	62007708	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:62007708G>A	uc002jdq.1	-	3	239	c.156C>T	c.(154-156)TTC>TTT	p.F52F	CD79B_uc002jdo.1_Silent_p.F26F|CD79B_uc002jdp.1_Silent_p.F53F|CD79B_uc002jdr.1_Intron	NM_000626	NP_000617	P40259	CD79B_HUMAN	CD79B antigen isoform 1 precursor	52	Extracellular (Potential).|Ig-like V-type.				cell surface receptor linked signaling pathway|immune response	Golgi apparatus|integral to plasma membrane|nucleus	transmembrane receptor activity				0						TCCTGGCTATGAAACGTGGGC	0.582			Mis|O		DLBCL								11	25					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62022884	62022884	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:62022884A>G	uc002jds.1	-	19	3633	c.3556T>C	c.(3556-3558)TTC>CTC	p.F1186L		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1186	III.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	CAGTAGTAGAACTTGCCGGCA	0.547													17	315					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62049186	62049186	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:62049186G>A	uc002jds.1	-	4	584	c.507C>T	c.(505-507)ACC>ACT	p.T169T		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	169	Helical; Name=S2 of repeat I; (Potential).|I.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GGGACTCAAAGGTGTAGATCC	0.592													7	28					0	0	1	0	0
ICAM2	3384	broad.mit.edu	37	17	62082516	62082516	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:62082516G>A	uc002jdu.3	-	2	511	c.279C>T	c.(277-279)TTC>TTT	p.F93F	ICAM2_uc002jdw.3_Silent_p.F93F|ICAM2_uc010ded.2_Silent_p.F93F|ICAM2_uc002jdx.3_Silent_p.F93F|ICAM2_uc002jdv.3_Silent_p.F93F|ICAM2_uc010wpx.1_Silent_p.F93F	NM_000873	NP_000864	P13598	ICAM2_HUMAN	intercellular adhesion molecule 2 precursor	93	Ig-like C2-type 1.|Extracellular (Potential).				cell-cell adhesion|regulation of immune response	integral to plasma membrane	integrin binding			ovary(1)	1						CGGAGCAGGTGAAGTGGCATT	0.552													5	49					0	0	1	0	0
ERN1	2081	broad.mit.edu	37	17	62121386	62121386	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:62121386G>A	uc002jdz.2	-	22	3009	c.2896C>T	c.(2896-2898)CCA>TCA	p.P966S	uc002jdy.1_5'Flank	NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	966	Cytoplasmic (Potential).				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						TGGGGCTCTGGGGGCTCGTGG	0.647													21	168					0	0	1	0	0
POLG2	11232	broad.mit.edu	37	17	62486935	62486935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:62486935G>A	uc002jei.2	-	4	1030	c.947C>T	c.(946-948)CCT>CTT	p.P316L	POLG2_uc010deg.1_Missense_Mutation_p.P316L	NM_007215	NP_009146	Q9UHN1	DPOG2_HUMAN	DNA polymerase subunit gamma-2, mitochondrial	316					DNA repair|DNA-dependent DNA replication|glycyl-tRNA aminoacylation	mitochondrial chromosome	ATP binding|DNA-directed DNA polymerase activity|glycine-tRNA ligase activity|identical protein binding|single-stranded DNA binding			central_nervous_system(1)	1	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;4.97e-11)			CACATTGCCAGGATACATGTG	0.338													5	43					0	0	1	0	0
DDX5	1655	broad.mit.edu	37	17	62496325	62496326	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:62496325_62496326GG>AA	uc002jek.2	-	13	1807_1808	c.1560_1561CC>TT	c.(1558-1563)AGCCTG>AGTTTG	p.520_521SL>SL	DDX5_uc010deh.2_Silent_p.520_521SL>SL|DDX5_uc002jej.2_Silent_p.415_416SL>SL|DDX5_uc010wqa.1_Silent_p.441_442SL>SL	NM_004396	NP_004387	P17844	DDX5_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	520_521					cell growth|regulation of alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA helicase activity|transcription cofactor activity			ovary(2)|lung(1)	3	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			CTTTTAAGCAGGCTAGAGTAAC	0.436			T	ETV4	prostate								17	160					0	0	1	0	0
LOC146880	146880	broad.mit.edu	37	17	62754737	62754737	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:62754737G>A	uc010wqc.1	-	7		c.1613C>T				NR_026899				Homo sapiens cDNA FLJ30780 fis, clone FEBRA2000856.												0						TGAGACAAAGGGAGAAAGCTA	0.378													17	58					0	0	1	0	0
AMZ2P1	201283	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	G	G	rs138671696	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:62968690A>G	uc002jez.3	-	4		c.641T>C			AMZ2P1_uc002jfa.3_RNA|AMZ2P1_uc002jfb.3_RNA|AMZ2P1_uc010del.2_RNA					Homo sapiens cDNA FLJ32065 fis, clone OCBBF1000086, weakly similar to Archeobacterial metalloproteinase-like protein 2 (EC 3.-.-.-).												0						AAAATTCCACAAGTCTCTTGG	0.373													4	106					0	0	1	0	0
AMZ2P1	201283	broad.mit.edu	37	17	62968916	62968916	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:62968916G>A	uc002jez.3	-	3		c.506C>T			AMZ2P1_uc002jfa.3_RNA|AMZ2P1_uc002jfb.3_RNA|AMZ2P1_uc010del.2_RNA					Homo sapiens cDNA FLJ32065 fis, clone OCBBF1000086, weakly similar to Archeobacterial metalloproteinase-like protein 2 (EC 3.-.-.-).												0						GACTCTAAAGGAACACCTTGT	0.353													3	19					0	0	1	0	0
GNA13	10672	broad.mit.edu	37	17	63010527	63010527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:63010527C>T	uc002jfc.2	-	4	1191	c.982G>A	c.(982-984)GAA>AAA	p.E328K	GNA13_uc010wqh.1_Missense_Mutation_p.E233K	NM_006572	NP_006563	Q14344	GNA13_HUMAN	guanine nucleotide binding protein (G protein),	328					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase D activity|cellular component movement|platelet activation|Rho protein signal transduction	brush border membrane|heterotrimeric G-protein complex|melanosome	D5 dopamine receptor binding|G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|signal transducer activity|type 1 angiotensin receptor binding				0						CGGAAACATTCCACCAGGAAT	0.478													7	59					0	0	1	0	0
CCDC46	201134	broad.mit.edu	37	17	64092741	64092741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:64092741G>A	uc002jfl.2	-	7	871	c.652C>T	c.(652-654)CCT>TCT	p.P218S	CCDC46_uc002jfm.2_Missense_Mutation_p.P218S|CCDC46_uc010dep.2_Intron	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	218						centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			AGGTATCGAGGATTTTCTATC	0.244													3	8					0	0	1	0	0
APOH	350	broad.mit.edu	37	17	64210749	64210749	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:64210749C>T	uc002jfn.3	-	7	863	c.804G>A	c.(802-804)GTG>GTA	p.V268V		NM_000042	NP_000033	P02749	APOH_HUMAN	apolipoprotein H precursor	268	Sushi-like.				blood coagulation, intrinsic pathway|negative regulation of angiogenesis|negative regulation of blood coagulation|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of myeloid cell apoptosis|negative regulation of smooth muscle cell apoptosis|plasminogen activation|positive regulation of lipoprotein lipase activity|triglyceride metabolic process|triglyceride transport	cell surface|chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	eukaryotic cell surface binding|glycoprotein binding|heparin binding|lipoprotein lipase activator activity|phospholipid binding				0			BRCA - Breast invasive adenocarcinoma(6;9.74e-08)			TGGCTTTTTTCACAGGTACTT	0.358													13	61					0	0	1	0	0
PRKCA	5578	broad.mit.edu	37	17	64641554	64641554	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:64641554G>A	uc002jfp.1	+	5	498	c.454G>A	c.(454-456)GGA>AGA	p.G152R	PRKCA_uc002jfo.1_Missense_Mutation_p.G23R	NM_002737	NP_002728	P17252	KPCA_HUMAN	protein kinase C, alpha	152					activation of phospholipase C activity|energy reserve metabolic process|induction of apoptosis by extracellular signals|intracellular signal transduction|mRNA metabolic process|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of blood vessel endothelial cell migration|regulation of insulin secretion|response to interleukin-1|synaptic transmission	cytosol|endoplasmic reticulum|membrane fraction|nucleoplasm|plasma membrane	ATP binding|enzyme binding|histone kinase activity (H3-T6 specific)|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(1)|stomach(1)|lung(1)|breast(1)|ovary(1)	9			BRCA - Breast invasive adenocarcinoma(6;4.68e-09)		Phosphatidylserine(DB00144)|Vitamin E(DB00163)	CAGCCTCTGCGGAATGGATCA	0.522													9	35					0	0	1	0	0
CACNG5	27091	broad.mit.edu	37	17	64875094	64875095	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:64875094_64875095GG>AA	uc010wqi.1	+	3	438_439	c.201_202GG>AA	c.(199-204)GAGGAG>GAAAAG	p.E68K	CACNG5_uc002jfr.2_Missense_Mutation_p.E68K|CACNG5_uc010wqj.1_Missense_Mutation_p.E68K	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	68					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			CCACAGGTGAGGAGCGGGGGCG	0.465													8	83					0	0	1	0	0
HELZ	9931	broad.mit.edu	37	17	65184496	65184496	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:65184496G>A	uc010wqk.1	-	12	1288	c.1101C>T	c.(1099-1101)TTC>TTT	p.F367F	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Silent_p.F367F	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					ATCCAAAGTCGAAAACTATGG	0.368													10	92					0	0	1	0	0
HELZ	9931	broad.mit.edu	37	17	65214781	65214781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:65214781G>A	uc010wqk.1	-	4	327	c.140C>T	c.(139-141)CCT>CTT	p.P47L	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Missense_Mutation_p.P47L|HELZ_uc010des.1_Missense_Mutation_p.P47L	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					CAATGGACAAGGCCCTGTGAA	0.458													24	86					0	0	1	0	0
BPTF	2186	broad.mit.edu	37	17	65909211	65909212	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:65909211_65909212CC>TT	uc002jgf.2	+	11	5272_5273	c.5211_5212CC>TT	c.(5209-5214)ATCCGA>ATTTGA	p.R1738*	BPTF_uc002jge.2_Nonsense_Mutation_p.R1864*	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1864					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			AAGGAGGAATCCGAGAGGTCCC	0.406													12	84					0	0	1	0	0
KPNA2	3838	broad.mit.edu	37	17	66040613	66040613	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:66040613C>T	uc002jgk.2	+	9	1473	c.1341C>T	c.(1339-1341)ATC>ATT	p.I447I	KPNA2_uc002jgl.2_Silent_p.I447I	NM_002266	NP_002257	P52292	IMA2_HUMAN	karyopherin alpha 2	447	ARM 9.				DNA metabolic process|G2 phase of mitotic cell cycle|interspecies interaction between organisms|M phase specific microtubule process|NLS-bearing substrate import into nucleus|regulation of DNA recombination	cytoplasm|nuclear pore|nucleoplasm	histone deacetylase binding|nuclear localization sequence binding|protein transporter activity			central_nervous_system(2)	2	all_cancers(12;1.18e-09)		BRCA - Breast invasive adenocarcinoma(8;1.03e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			TTTCAAATATCTTTCAGGTAA	0.378													19	336					0	0	1	0	0
SLC16A6	9120	broad.mit.edu	37	17	66267065	66267065	+	Silent	SNP	G	A	A	rs144195353		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:66267065G>A	uc002jgz.1	-	5	1424	c.1236C>T	c.(1234-1236)GTC>GTT	p.V412V	ARSG_uc002jhc.2_Intron|SLC16A6_uc002jha.1_Silent_p.V412V	NM_004694	NP_004685	O15403	MOT7_HUMAN	solute carrier family 16, member 6	412	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity				0	all_cancers(12;1.24e-09)		BRCA - Breast invasive adenocarcinoma(8;3.17e-08)|LUSC - Lung squamous cell carcinoma(166;0.24)		Pyruvic acid(DB00119)	CAATGCCCACGACATCATCCT	0.468													8	48					0	0	1	0	0
ARSG	22901	broad.mit.edu	37	17	66339802	66339802	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:66339802C>T	uc002jhc.2	+	3	1072	c.276C>T	c.(274-276)CTC>CTT	p.L92L	ARSG_uc002jhb.1_5'UTR	NM_014960	NP_055775	Q96EG1	ARSG_HUMAN	Arylsulfatase G precursor	92					sulfur compound metabolic process	endoplasmic reticulum|extracellular space|lysosome	arylsulfatase activity|metal ion binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;5.34e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			CTTCCTTGCTCACCGGCCGGC	0.607													10	68					0	0	1	0	0
WIPI1	55062	broad.mit.edu	37	17	66446943	66446943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:66446943G>A	uc010dey.2	-	3	350	c.259C>T	c.(259-261)CAC>TAC	p.H87Y	WIPI1_uc002jhd.3_RNA|WIPI1_uc010wqo.1_Missense_Mutation_p.H5Y|WIPI1_uc002jhe.3_RNA	NM_017983	NP_060453	Q5MNZ9	WIPI1_HUMAN	WD repeat domain, phosphoinositide interacting	87					macroautophagy|vesicle targeting, trans-Golgi to endosome	autophagic vacuole membrane|clathrin-coated vesicle|cytosol|endosome membrane|PAS complex|pre-autophagosomal structure membrane|trans-Golgi network	androgen receptor binding|estrogen receptor binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding				0						TTCTTGAAGTGATACACGTTC	0.507													9	139					0	0	1	0	0
ABCA8	10351	broad.mit.edu	37	17	66898966	66898966	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:66898966C>T	uc002jhp.2	-	19	2711	c.2532G>A	c.(2530-2532)GTG>GTA	p.V844V	ABCA8_uc002jhq.2_Silent_p.V884V|ABCA8_uc010wqq.1_Silent_p.V884V|ABCA8_uc010wqr.1_Silent_p.V823V|ABCA8_uc002jhr.2_Silent_p.V884V	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	844	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GATATATTTTCACCATGGTAT	0.388													7	61					0	0	1	0	0
ABCA8	10351	broad.mit.edu	37	17	66902294	66902294	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:66902294C>T	uc002jhp.2	-	17	2348	c.2169G>A	c.(2167-2169)AAG>AAA	p.K723K	ABCA8_uc002jhq.2_Silent_p.K763K|ABCA8_uc010wqq.1_Silent_p.K763K|ABCA8_uc010wqr.1_Silent_p.K702K|ABCA8_uc002jhr.2_Silent_p.K763K	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	723						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TATCAAGATCCTTGTAAAGTT	0.313													11	57					0	0	1	0	0
ABCA8	10351	broad.mit.edu	37	17	66924059	66924059	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:66924059G>T	uc002jhp.2	-	9	1450	c.1271C>A	c.(1270-1272)CCA>CAA	p.P424Q	ABCA8_uc002jhq.2_Missense_Mutation_p.P424Q|ABCA8_uc010wqq.1_Missense_Mutation_p.P424Q|ABCA8_uc010wqr.1_Missense_Mutation_p.P363Q|ABCA8_uc002jhr.2_Missense_Mutation_p.P424Q	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	424						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TTACTCACTTGGCAAAATTTT	0.299													3	3					1	1	1	1	0
ABCA6	23460	broad.mit.edu	37	17	67079070	67079070	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:67079070C>T	uc002jhw.1	-	36	4735	c.4560G>A	c.(4558-4560)GTG>GTA	p.V1520V		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1520					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					GGACCAAAGTCACTTGAGACG	0.448													8	163					0	0	1	0	0
MAP2K6	5608	broad.mit.edu	37	17	67515549	67515549	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:67515549C>T	uc002jij.2	+	5	630	c.342C>T	c.(340-342)ACC>ACT	p.T114T	MAP2K6_uc002jii.2_Silent_p.T114T|MAP2K6_uc002jik.2_Silent_p.T144T	NM_002758	NP_002749	P52564	MP2K6_HUMAN	mitogen-activated protein kinase kinase 6	114	Protein kinase.				activation of MAPK activity|cell cycle arrest|DNA damage induced protein phosphorylation|innate immune response|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of muscle cell differentiation|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|pancreas(1)	5	Breast(10;6.05e-10)					TCACTGTCACCTTTTATGGCG	0.443													6	101					0	0	1	0	0
SLC39A11	201266	broad.mit.edu	37	17	70845857	70845857	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:70845857G>A	uc002jjb.2	-	6	653	c.538C>T	c.(538-540)CGA>TGA	p.R180*	SLC39A11_uc002jja.2_Nonsense_Mutation_p.R173*|SLC39A11_uc002jjc.1_Nonsense_Mutation_p.R173*	NM_001159770	NP_001153242	Q8N1S5	S39AB_HUMAN	solute carrier family 39, member 11 isoform 1	180					zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)	1						AGATTCCCTCGAGAAGGCACA	0.562													9	71					0	0	1	0	0
CDC42EP4	23580	broad.mit.edu	37	17	71281976	71281977	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:71281976_71281977GG>AA	uc002jjn.2	-	2	810_811	c.663_664CC>TT	c.(661-666)GTCCTC>GTTTTC	p.L222F	CDC42EP4_uc002jjo.2_Missense_Mutation_p.L222F|CDC42EP4_uc002jjp.1_Missense_Mutation_p.L152F	NM_012121	NP_036253	Q9H3Q1	BORG4_HUMAN	Cdc42 effector protein 4	222					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|cytoplasm|endomembrane system|membrane|microtubule cytoskeleton	GTP-Rho binding				0			LUSC - Lung squamous cell carcinoma(166;0.0352)|Lung(188;0.0711)			ATGATGCTGAGGACGTCACCCA	0.644													4	92					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71398251	71398251	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:71398251C>T	uc010dfm.2	-	19	2514	c.2514G>A	c.(2512-2514)GAG>GAA	p.E838E	SDK2_uc002jjt.3_5'UTR|SDK2_uc010dfn.2_Silent_p.E517E	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	838	Fibronectin type-III 3.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						TGGTAACCTCCTCTTCCTGTT	0.602													5	44					0	0	1	0	0
DNAI2	64446	broad.mit.edu	37	17	72308208	72308208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:72308208G>A	uc002jkf.2	+	12	1660	c.1561G>A	c.(1561-1563)GAG>AAG	p.E521K	DNAI2_uc002jkg.2_RNA|DNAI2_uc010dfp.2_RNA|uc002jkh.1_5'Flank|DNAI2_uc002jki.2_RNA	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	521					cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3						GCGGCTGAAGGAGAAGGGTAA	0.647									Kartagener_syndrome				11	38					0	0	1	0	0
KIF19	124602	broad.mit.edu	37	17	72346604	72346604	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:72346604C>T	uc002jkm.3	+	11	1416	c.1278C>T	c.(1276-1278)CTC>CTT	p.L426L	KIF19_uc002jkj.2_Silent_p.L426L|KIF19_uc002jkk.2_Silent_p.L384L|KIF19_uc002jkl.2_Silent_p.L384L	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	426	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						GGGAGCAGCTCGCCAGCGCCT	0.657													5	21					0	0	1	0	0
KIF19	124602	broad.mit.edu	37	17	72347041	72347041	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:72347041G>A	uc002jkm.3	+	12	1722	c.1584G>A	c.(1582-1584)CAG>CAA	p.Q528Q	KIF19_uc002jkj.2_Silent_p.Q528Q|KIF19_uc002jkk.2_Silent_p.Q486Q|KIF19_uc002jkl.2_Silent_p.Q486Q	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	528	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						TGCGCAAGCAGAAGGTGTCCA	0.498													16	94					0	0	1	0	0
CD300A	11314	broad.mit.edu	37	17	72469981	72469982	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:72469981_72469982CC>TT	uc002jkv.2	+	2	668_669	c.347_348CC>TT	c.(346-348)CCC>CTT	p.P116L	CD300A_uc002jkw.2_Intron|CD300A_uc010dfr.2_Intron|CD300A_uc010dfs.2_Intron	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	116	Extracellular (Potential).|Ig-like V-type.				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						TTTCATGATCCCGTTGTCGAGG	0.559													13	47					0	0	1	0	0
CD300A	11314	broad.mit.edu	37	17	72477888	72477888	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:72477888C>T	uc002jkv.2	+	6	1011	c.690C>T	c.(688-690)CAC>CAT	p.H230H	CD300A_uc002jkw.2_Silent_p.H117H|CD300A_uc010dfr.2_Intron|CD300A_uc010dfs.2_Silent_p.H34H	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	230	Cytoplasmic (Potential).				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						GTGAGCTGCACTACGCAAATC	0.622													5	16					0	0	1	0	0
CD300LB	124599	broad.mit.edu	37	17	72519788	72519788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:72519788C>T	uc002jkx.2	-	3	497	c.484G>A	c.(484-486)GGA>AGA	p.G162R	CD300LB_uc010wqz.1_Missense_Mutation_p.G162R	NM_174892	NP_777552	A8K4G0	CLM7_HUMAN	CD300 molecule-like family member b	125	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						GAAGCCGCTCCCTCTAGACAC	0.552													7	56					0	0	1	0	0
CD300LB	124599	broad.mit.edu	37	17	72521938	72521938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:72521938C>T	uc002jkx.2	-	2	443	c.430G>A	c.(430-432)GAA>AAA	p.E144K	CD300LB_uc010wqz.1_Missense_Mutation_p.E144K	NM_174892	NP_777552	A8K4G0	CLM7_HUMAN	CD300 molecule-like family member b	107	Ig-like V-type.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						CCTCTTCTTTCAATCCCACAC	0.527													59	161					0	0	1	0	0
CD300C	10871	broad.mit.edu	37	17	72541018	72541018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:72541018G>A	uc002jky.1	-	2	491	c.130C>T	c.(130-132)CGC>TGC	p.R44C		NM_006678	NP_006669	Q08708	CLM6_HUMAN	CD300C antigen precursor	44	Extracellular (Potential).|Ig-like V-type.				cellular defense response	integral to plasma membrane	transmembrane receptor activity				0						TTCTCATAGCGACACTGCACA	0.532													10	64					0	0	1	0	0
CD300E	342510	broad.mit.edu	37	17	72613448	72613448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:72613448C>T	uc002jlb.1	-	2	238	c.197G>A	c.(196-198)GGA>GAA	p.G66E		NM_181449	NP_852114	Q496F6	CLM2_HUMAN	CD300e molecule precursor	66	Ig-like V-type.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						CTTCTCTTCTCCCTTGGTCTC	0.522													8	82					0	0	1	0	0
RAB37	326624	broad.mit.edu	37	17	72738419	72738419	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:72738419G>A	uc002jlk.2	+	3	287	c.231G>A	c.(229-231)GTG>GTA	p.V77V	RAB37_uc002jlc.2_Silent_p.V70V|RAB37_uc010dfu.2_Silent_p.V70V|RAB37_uc002jld.2_Silent_p.V70V|RAB37_uc010wrb.1_Silent_p.V45V|RAB37_uc010wrc.1_Silent_p.V82V|RAB37_uc010wrd.1_Silent_p.V45V|RAB37_uc010wre.1_Silent_p.V40V|RAB37_uc002jll.3_RNA	NM_001006638	NP_001006639	Q96AX2	RAB37_HUMAN	RAB37, member RAS oncogene family isoform 2	77					protein transport|small GTPase mediated signal transduction	ER-Golgi intermediate compartment	GTP binding			ovary(1)	1						TGGATGGCGTGAGAGTGAAGC	0.587													4	22					0	0	1	0	0
FDXR	2232	broad.mit.edu	37	17	72859054	72859054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:72859054G>A	uc002jly.2	-	12	1448	c.1361C>T	c.(1360-1362)TCT>TTT	p.S454F	GRIN2C_uc002jlu.1_5'Flank|GRIN2C_uc002jlv.1_5'Flank|FDXR_uc010wri.1_Missense_Mutation_p.S402F|FDXR_uc010wrj.1_Missense_Mutation_p.S452F|FDXR_uc002jlw.2_Missense_Mutation_p.S211F|FDXR_uc002jlx.2_Missense_Mutation_p.S460F|FDXR_uc002jmc.2_Missense_Mutation_p.S426F|FDXR_uc010wrk.1_Missense_Mutation_p.S485F|FDXR_uc010wrl.1_Missense_Mutation_p.S497F|FDXR_uc002jma.2_Missense_Mutation_p.S455F|FDXR_uc010wrm.1_Missense_Mutation_p.S414F|FDXR_uc002jlz.2_Missense_Mutation_p.S446F|FDXR_uc002jmb.2_RNA	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	454					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					GTCTGAGAAAGAGACTGGCCG	0.632													4	53					0	0	1	0	0
OTOP2	92736	broad.mit.edu	37	17	72921689	72921689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:72921689G>A	uc010wrp.1	+	4	441	c.352G>A	c.(352-354)GAT>AAT	p.D118N	USH1G_uc002jme.1_5'Flank|USH1G_uc010wro.1_5'Flank|OTOP2_uc002jmf.1_Missense_Mutation_p.D118N	NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	118	Helical; (Potential).					integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					CCTCATCATGGATGTCTTCAA	0.557													6	126					0	0	1	0	0
C17orf28	283987	broad.mit.edu	37	17	72958339	72958339	+	Missense_Mutation	SNP	C	T	T	rs141799560	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:72958339C>T	uc002jmj.3	-	5	750	c.601G>A	c.(601-603)GAT>AAT	p.D201N	C17orf28_uc010wrs.1_5'UTR|C17orf28_uc002jmk.2_Missense_Mutation_p.D200N	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	201						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					CGGTTCATATCGTGGATGTAG	0.647													14	62					0	0	1	0	0
C17orf28	283987	broad.mit.edu	37	17	72960726	72960726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:72960726G>A	uc002jmj.3	-	2	217	c.68C>T	c.(67-69)CCC>CTC	p.P23L	C17orf28_uc010wrs.1_5'UTR|C17orf28_uc002jmk.2_Missense_Mutation_p.P23L	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	23						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					GGCTTCCACGGGCTGTGGGGG	0.612													5	34					0	0	1	0	0
KIAA0195	9772	broad.mit.edu	37	17	73492407	73492408	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:73492407_73492408CC>TT	uc002jnz.3	+	24	3373_3374	c.3098_3099CC>TT	c.(3097-3099)ACC>ATT	p.T1033I	KIAA0195_uc010wsa.1_Missense_Mutation_p.T1043I|KIAA0195_uc010wsb.1_Missense_Mutation_p.T673I|KIAA0195_uc002job.3_Missense_Mutation_p.T41I	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	1033					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			TCCTGGGAGACCTTTGGCTACG	0.624													16	42					0	0	1	0	0
LLGL2	3993	broad.mit.edu	37	17	73554278	73554278	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:73554278G>A	uc002joh.2	+	4	370	c.216G>A	c.(214-216)GAG>GAA	p.E72E	LLGL2_uc002jog.1_Silent_p.E72E|LLGL2_uc010dgf.1_Silent_p.E72E|LLGL2_uc002joi.2_Silent_p.E72E|LLGL2_uc010dgg.1_Silent_p.E72E|LLGL2_uc002joj.2_Silent_p.E61E	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	72					cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			TGCACCAGGAGAACAACGCTG	0.627													13	131					0	0	1	0	0
LLGL2	3993	broad.mit.edu	37	17	73569340	73569340	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:73569340C>T	uc002joh.2	+	20	2860	c.2706C>T	c.(2704-2706)GTC>GTT	p.V902V	LLGL2_uc002joi.2_Silent_p.V902V|LLGL2_uc010dgg.1_Silent_p.V902V|LLGL2_uc002joj.2_Silent_p.V891V|LLGL2_uc010wsd.1_Silent_p.V529V	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	902	WD 14.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			CCTCCTGCGTCTTCACCAAAT	0.677													29	87					0	0	1	0	0
RECQL5	9400	broad.mit.edu	37	17	73625320	73625320	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:73625320G>A	uc010dgl.2	-	16	2339	c.2183C>T	c.(2182-2184)CCT>CTT	p.P728L	RECQL5_uc010dgk.2_Missense_Mutation_p.P701L|RECQL5_uc002jot.3_5'Flank	NM_004259	NP_004250	O94762	RECQ5_HUMAN	RecQ protein-like 5 isoform 1	728					DNA recombination|DNA repair	cytoplasm|nuclear membrane|nucleolus|nucleoplasm	ATP binding|ATP-dependent helicase activity|DNA helicase activity|nucleic acid binding			kidney(3)	3	all_cancers(13;2.73e-08)|Breast(9;6.04e-09)|all_epithelial(9;6.79e-09)		all cancers(21;1.15e-06)|Epithelial(20;2.19e-06)|Lung(188;0.101)|LUSC - Lung squamous cell carcinoma(166;0.112)			CTTCTTCTCAGGGGAGGGCCC	0.652								Other_identified_genes_with_known_or_suspected_DNA_repair_function					6	38					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73726336	73726336	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:73726336G>A	uc002jpg.2	+	8	940	c.753G>A	c.(751-753)TGG>TGA	p.W251*	ITGB4_uc002jph.2_Nonsense_Mutation_p.W251*|ITGB4_uc010dgo.2_Nonsense_Mutation_p.W251*|ITGB4_uc002jpi.3_Nonsense_Mutation_p.W251*|ITGB4_uc010dgp.1_Nonsense_Mutation_p.W251*|ITGB4_uc002jpj.2_Nonsense_Mutation_p.W251*|ITGB4_uc010wsh.1_5'Flank	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	251	VWFA.|Extracellular (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			ACATTGGCTGGCGCCCGGACA	0.662													5	43					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73727994	73727994	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:73727994C>T	uc002jpg.2	+	11	1504	c.1317C>T	c.(1315-1317)TCC>TCT	p.S439S	ITGB4_uc002jph.2_Silent_p.S439S|ITGB4_uc010dgo.2_Silent_p.S439S|ITGB4_uc002jpi.3_Silent_p.S439S|ITGB4_uc010dgp.1_Silent_p.S439S|ITGB4_uc002jpj.2_Silent_p.S439S|ITGB4_uc010wsh.1_5'UTR	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	439	Extracellular (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			TGAAACCTTCCTTCTCCGACG	0.627													11	50					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73728000	73728000	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:73728000C>T	uc002jpg.2	+	11	1510	c.1323C>T	c.(1321-1323)TCC>TCT	p.S441S	ITGB4_uc002jph.2_Silent_p.S441S|ITGB4_uc010dgo.2_Silent_p.S441S|ITGB4_uc002jpi.3_Silent_p.S441S|ITGB4_uc010dgp.1_Silent_p.S441S|ITGB4_uc002jpj.2_Silent_p.S441S|ITGB4_uc010wsh.1_5'UTR	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	441	Extracellular (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CTTCCTTCTCCGACGGCCTCA	0.637													4	57					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73736438	73736438	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:73736438G>A	uc002jpg.2	+	21	2634	c.2447_splice	c.e21-1	p.V816_splice	ITGB4_uc002jph.2_Splice_Site_p.V816_splice|ITGB4_uc010dgo.2_Splice_Site_p.V816_splice|ITGB4_uc002jpi.3_Splice_Site_p.V816_splice|ITGB4_uc010dgp.1_Splice_Site_p.V816_splice|ITGB4_uc002jpj.2_Splice_Site_p.V816_splice	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor						cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCTTTCCTTAGTGCCCTACGG	0.647													7	72					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73738802	73738802	+	Silent	SNP	C	T	T	rs139130590	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:73738802C>T	uc002jpg.2	+	25	3109	c.2922C>T	c.(2920-2922)CTC>CTT	p.L974L	ITGB4_uc002jph.2_Silent_p.L974L|ITGB4_uc002jpi.3_Silent_p.L974L|ITGB4_uc010dgp.1_3'UTR|ITGB4_uc002jpj.2_Silent_p.L974L	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	974	Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CTGCCACCCTCGGCCGCCGCC	0.502													5	46					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73746258	73746258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:73746258G>A	uc002jpg.2	+	28	3570	c.3383G>A	c.(3382-3384)GGC>GAC	p.G1128D	ITGB4_uc002jph.2_Missense_Mutation_p.G1128D|ITGB4_uc002jpi.3_Missense_Mutation_p.G1128D|ITGB4_uc002jpj.2_Missense_Mutation_p.G1128D	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1128	Fibronectin type-III 1.|Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GGCGACCTGGGCGCCCCGCAG	0.617											OREG0024739	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	74					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73748623	73748623	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:73748623C>T	uc002jpg.2	+	32	4260	c.4073C>T	c.(4072-4074)TCG>TTG	p.S1358L	ITGB4_uc002jph.2_Missense_Mutation_p.S1358L|ITGB4_uc002jpi.3_Missense_Mutation_p.S1358L|ITGB4_uc002jpj.2_Missense_Mutation_p.S1358L|GALK1_uc010wsi.1_Intron	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1358	Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CGCTCTCCATCGGGCAGCCAG	0.602													16	129					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73752875	73752875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:73752875G>A	uc002jpg.2	+	37	5175	c.4988G>A	c.(4987-4989)CGG>CAG	p.R1663Q	ITGB4_uc002jph.2_Missense_Mutation_p.R1593Q|ITGB4_uc002jpi.3_Missense_Mutation_p.R1593Q|ITGB4_uc002jpj.2_Missense_Mutation_p.R1646Q|GALK1_uc010wsi.1_Intron	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1663	Fibronectin type-III 4.|Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			AGCTGGGAGCGGCCACGGAGG	0.687													12	91					0	0	1	0	0
WBP2	23558	broad.mit.edu	37	17	73843626	73843626	+	Silent	SNP	G	A	A	rs149635149	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:73843626G>A	uc002jps.2	-	6	720	c.597C>T	c.(595-597)CCC>CCT	p.P199P	UNC13D_uc002jpp.2_5'Flank|UNC13D_uc010wsk.1_5'Flank|UNC13D_uc002jpq.1_5'Flank|WBP2_uc002jpr.2_Silent_p.P165P|WBP2_uc010wsl.1_Silent_p.P165P|WBP2_uc002jpt.2_Silent_p.P195P|WBP2_uc002jpu.1_RNA|WBP2_uc010wsm.1_Silent_p.P154P|WBP2_uc010wsn.1_Silent_p.P168P	NM_012478	NP_036610	Q969T9	WBP2_HUMAN	WW domain binding protein 2	199	WW-binding 1.|Pro-rich.						protein binding				0			all cancers(21;2.61e-06)|Epithelial(20;2.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00092)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCCCAGGGTAGGGCGGTGGTG	0.657													4	42					0	0	1	0	0
ACOX1	51	broad.mit.edu	37	17	73945888	73945888	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:73945888G>A	uc002jqf.2	-	10	1679	c.1389C>T	c.(1387-1389)ATC>ATT	p.I463I	ACOX1_uc010wsq.1_Silent_p.I425I|ACOX1_uc002jqe.2_Silent_p.I463I|ACOX1_uc010wsr.1_Silent_p.I395I	NM_007292	NP_009223	Q15067	ACOX1_HUMAN	acyl-Coenzyme A oxidase 1 isoform b	463					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|prostaglandin metabolic process|very long-chain fatty acid metabolic process	peroxisomal matrix	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity|flavin adenine dinucleotide binding|protein N-terminus binding			ovary(1)	1						GCTGTGGCTGGATGCGCTGAC	0.517													6	69					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74003694	74003694	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74003694G>A	uc002jqi.2	-	22	5820	c.5592C>T	c.(5590-5592)GCC>GCT	p.A1864A	EVPL_uc010wss.1_Silent_p.A1886A|EVPL_uc010wst.1_Silent_p.A1334A	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1864	Globular 2.|Plectin 4.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TGCCCCCTGTGGCCGCCTGGG	0.602													11	149					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74004845	74004845	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74004845G>A	uc002jqi.2	-	22	4669	c.4441C>T	c.(4441-4443)CTG>TTG	p.L1481L	EVPL_uc010wss.1_Silent_p.L1503L|EVPL_uc010wst.1_Silent_p.L951L	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1481	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TCCCACCGCAGGGCTTCCGTG	0.592													18	124					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74005341	74005341	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74005341C>T	uc002jqi.2	-	22	4173	c.3945G>A	c.(3943-3945)AAG>AAA	p.K1315K	EVPL_uc010wss.1_Silent_p.K1337K|EVPL_uc010wst.1_Silent_p.K785K	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1315	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GCACCACCTCCTTGCTCACCG	0.706													17	222					0	0	1	0	0
EVPL	2125	broad.mit.edu	37	17	74006118	74006118	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74006118C>T	uc002jqi.2	-	22	3396	c.3168G>A	c.(3166-3168)CTG>CTA	p.L1056L	EVPL_uc010wss.1_Silent_p.L1078L|EVPL_uc010wst.1_Silent_p.L526L	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1056	Central fibrous rod domain.|Potential.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GCTCCTTCTTCAGCCCTTCCA	0.612													28	139					0	0	1	0	0
SRP68	6730	broad.mit.edu	37	17	74060089	74060089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74060089G>A	uc002jqk.1	-	4	564	c.529C>T	c.(529-531)CGC>TGC	p.R177C	SRP68_uc010wsu.1_Missense_Mutation_p.R76C|SRP68_uc002jql.1_Missense_Mutation_p.R139C	NM_014230	NP_055045	Q9UHB9	SRP68_HUMAN	signal recognition particle 68kDa	177					response to drug	cytosol|endoplasmic reticulum|nucleolus|ribosome|signal recognition particle, endoplasmic reticulum targeting	RNA binding|signal recognition particle binding			ovary(1)	1						GCATCCACGCGATTGCTCTCA	0.448													7	102					0	0	1	0	0
ZACN	353174	broad.mit.edu	37	17	74075362	74075362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74075362C>T	uc002jqn.2	+	1	100	c.17C>T	c.(16-18)TCC>TTC	p.S6F	ZACN_uc002jqo.2_RNA|ZACN_uc010dgu.2_RNA	NM_180990	NP_851321	Q401N2	ZACN_HUMAN	zinc activated ligand-gated ion channel	6					response to zinc ion	integral to membrane|membrane fraction|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity				0						GCCCTATGGTCCCTGCTCCAT	0.582													4	25					0	0	1	0	0
EXOC7	23265	broad.mit.edu	37	17	74082214	74082214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74082214G>A	uc002jqs.2	-	14	1690	c.1595C>T	c.(1594-1596)TCG>TTG	p.S532L	EXOC7_uc002jqp.1_5'Flank|EXOC7_uc010dgv.1_Intron|EXOC7_uc002jqq.2_Missense_Mutation_p.S481L|EXOC7_uc010wsw.1_Missense_Mutation_p.S504L|EXOC7_uc010wsx.1_Missense_Mutation_p.S473L|EXOC7_uc002jqr.2_Missense_Mutation_p.S450L|EXOC7_uc010wsv.1_Missense_Mutation_p.S453L	NM_001145297	NP_001138769	Q9UPT5	EXOC7_HUMAN	exocyst complex component 7 isoform 4	532					exocytosis|protein transport	centriolar satellite|cytosol|exocyst|plasma membrane	protein binding				0			LUSC - Lung squamous cell carcinoma(166;0.187)			GCTGGTGGCCGAAGAGCTGGT	0.602													8	73					0	0	1	0	0
FAM100B	283991	broad.mit.edu	37	17	74266362	74266362	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74266362C>T	uc010wsy.1	+	3	572	c.271C>T	c.(271-273)CTG>TTG	p.L91L		NM_182565	NP_872371	Q8IYN6	F100B_HUMAN	hypothetical protein LOC283991	91										central_nervous_system(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			CTCCGAGGGCCTGCAGAGCAG	0.682													6	27					0	0	1	0	0
QRICH2	84074	broad.mit.edu	37	17	74278019	74278019	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74278019A>T	uc002jrd.1	-	8	3871	c.3691T>A	c.(3691-3693)TAT>AAT	p.Y1231N	QRICH2_uc010wsz.1_Missense_Mutation_p.Y1157N|QRICH2_uc010dgw.1_Missense_Mutation_p.Y75N	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1231							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						AGTTGCTCATAGCGCCGCACC	0.642													7	38					0	0	1	0	0
QRICH2	84074	broad.mit.edu	37	17	74278176	74278176	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74278176G>A	uc002jrd.1	-	8	3714	c.3534C>T	c.(3532-3534)ATC>ATT	p.I1178I	QRICH2_uc010wsz.1_Silent_p.I1104I|QRICH2_uc010dgw.1_Silent_p.I22I	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1178							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						TGCTCTCAATGATCATCCTGA	0.637													4	24					0	0	1	0	0
QRICH2	84074	broad.mit.edu	37	17	74288017	74288017	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74288017G>A	uc002jrd.1	-	4	2473	c.2293C>T	c.(2293-2295)CTG>TTG	p.L765L	QRICH2_uc010wsz.1_Silent_p.L691L|QRICH2_uc010dgw.1_Intron	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	765							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						GGTTGTACCAGGCCATGTGGA	0.458													10	158					0	0	1	0	0
UBE2O	63893	broad.mit.edu	37	17	74387427	74387427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74387427G>A	uc002jrm.3	-	18	3541	c.3476C>T	c.(3475-3477)CCC>CTC	p.P1159L	UBE2O_uc002jrl.3_Missense_Mutation_p.P763L	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	1159							ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						CACCCCGTTGGGCAGTGCCTG	0.642													10	39					0	0	1	0	0
UBE2O	63893	broad.mit.edu	37	17	74392458	74392458	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74392458G>A	uc002jrm.3	-	14	2625	c.2560C>T	c.(2560-2562)CTG>TTG	p.L854L	UBE2O_uc002jrn.3_Silent_p.L854L|UBE2O_uc002jrl.3_Silent_p.L458L	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	854	Potential.						ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						ATGTCATCCAGAAACTTCTTC	0.552													11	151					0	0	1	0	0
JMJD6	23210	broad.mit.edu	37	17	74719996	74719996	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74719996G>A	uc002jso.2	-	3	987	c.663C>T	c.(661-663)ACC>ACT	p.T221T	JMJD6_uc002jsn.1_Silent_p.T221T|JMJD6_uc010dgz.2_Silent_p.T221T|C17orf95_uc002jsp.2_5'Flank|C17orf95_uc002jsq.2_5'Flank|C17orf95_uc002jsr.2_5'Flank|C17orf95_uc002jss.2_5'Flank|C17orf95_uc002jst.2_5'Flank	NM_015167	NP_055982	Q6NYC1	JMJD6_HUMAN	jumonji domain containing 6 isoform 2	221	JmjC.				mRNA processing|peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine|regulation of nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|RNA splicing|sprouting angiogenesis|transcription, DNA-dependent	nucleolus|nucleoplasm	histone demethylase activity (H3-R2 specific)|histone demethylase activity (H4-R3 specific)|identical protein binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptidyl-lysine 5-dioxygenase activity|single-stranded RNA binding			skin(2)|ovary(1)	3						CTTCGTCTCGGGTCACTTTGA	0.537													34	97					0	0	1	0	0
MFSD11	79157	broad.mit.edu	37	17	74771114	74771114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:74771114C>T	uc002jta.2	+	12	1883	c.910C>T	c.(910-912)CGT>TGT	p.R304C	MFSD11_uc002jtb.2_Missense_Mutation_p.R304C|MFSD11_uc010dha.2_Missense_Mutation_p.R252C|MFSD11_uc002jtc.2_Missense_Mutation_p.R304C|MFSD11_uc002jtd.3_Missense_Mutation_p.R304C|MFSD11_uc010dhb.2_Missense_Mutation_p.R252C|MFSD11_uc002jte.2_Missense_Mutation_p.R304C	NM_024311	NP_077287	O43934	MFS11_HUMAN	major facilitator superfamily domain containing	304						integral to membrane				ovary(1)	1						CAAGAACAATCGTTTTGGTAG	0.468													38	149					0	0	1	0	0
TMC6	11322	broad.mit.edu	37	17	76117646	76117646	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:76117646G>A	uc002juj.1	-	10	1500	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F	TMC6_uc002jui.1_Silent_p.F97F|TMC6_uc010dhf.1_Silent_p.F291F|TMC6_uc002juk.2_Silent_p.F458F|TMC6_uc010dhg.1_Intron|TMC6_uc002jul.1_Silent_p.F458F|TMC6_uc002jum.3_Silent_p.F249F|TMC6_uc002jun.3_Silent_p.F458F|TMC6_uc002juo.2_Silent_p.F231F	NM_007267	NP_009198	Q7Z403	TMC6_HUMAN	transmembrane channel-like 6	458	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane					0			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			CCTGGATCATGAACTCCGAGA	0.701									Epidermodysplasia_Verruciformis_Familial_Clustering_of				10	40					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76451898	76451898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:76451898G>A	uc010dhp.1	-	8	1220	c.998C>T	c.(997-999)TCG>TTG	p.S333L	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GATGTTTTCCGATGCTAATCC	0.557													6	26					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76455200	76455200	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:76455200G>A	uc010dhp.1	-	6	966	c.744C>T	c.(742-744)ATC>ATT	p.I248I	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			AGAAGCGGACGATGTTGATGC	0.642													30	337					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76455254	76455254	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:76455254G>A	uc010dhp.1	-	6	912	c.690C>T	c.(688-690)TTC>TTT	p.F230F	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TGGAGCGGATGAACTCGGGGT	0.498													20	384					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	76496520	76496520	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:76496520G>A	uc002jvt.1	+	2		c.1979G>A								Homo sapiens cDNA FLJ45552 fis, clone BRTHA2038279.																		GAGATGGAGGGACTGGGTCAG	0.567													7	12					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	76497195	76497195	+	RNA	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:76497195G>C	uc002jvt.1	+	2		c.2654G>C								Homo sapiens cDNA FLJ45552 fis, clone BRTHA2038279.																		CCTCCAAGTCGGACAGTTCCA	0.368													6	30					0	0	1	0	0
TIMP2	7077	broad.mit.edu	37	17	76851755	76851755	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:76851755G>A	uc002jwf.2	-	5	959	c.657C>T	c.(655-657)GAC>GAT	p.D219D	TIMP2_uc002jwe.2_Silent_p.D142D|TIMP2_uc010wty.1_Silent_p.D142D	NM_003255	NP_003246	P16035	TIMP2_HUMAN	TIMP metallopeptidase inhibitor 2 precursor	219							metal ion binding|metalloendopeptidase inhibitor activity			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.194)			CTGCTTATGGGTCCTCGATGT	0.592													4	42					0	0	1	0	0
TIMP2	7077	broad.mit.edu	37	17	76867038	76867039	+	Missense_Mutation	DNP	GG	AA	AA	rs138408968		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:76867038_76867039GG>AA	uc002jwf.2	-	3	583_584	c.281_282CC>TT	c.(280-282)TCC>TTT	p.S94F	TIMP2_uc002jwe.2_Missense_Mutation_p.S17F|TIMP2_uc010wty.1_Missense_Mutation_p.S17F	NM_003255	NP_003246	P16035	TIMP2_HUMAN	TIMP metallopeptidase inhibitor 2 precursor	94	NTR.						metal ion binding|metalloendopeptidase inhibitor activity			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.194)			ACACTGCCGAGGAGGGGGCCGT	0.545													17	127					0	0	1	0	0
CANT1	124583	broad.mit.edu	37	17	76993539	76993539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:76993539G>A	uc002jwn.2	-	4	605	c.166C>T	c.(166-168)CTC>TTC	p.L56F	CANT1_uc002jwk.2_Missense_Mutation_p.L56F|CANT1_uc002jwj.2_Missense_Mutation_p.L56F|CANT1_uc002jwl.2_RNA|CANT1_uc002jwm.1_5'Flank	NM_001159772	NP_001153244	Q8WVQ1	CANT1_HUMAN	calcium activated nucleotidase 1	56	Helical; Signal-anchor for type II membrane protein; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to membrane	calcium ion binding|nucleoside-diphosphatase activity|signal transducer activity				0			BRCA - Breast invasive adenocarcinoma(99;0.0362)|OV - Ovarian serous cystadenocarcinoma(97;0.139)			AGCAGCCAGAGGATGGCAGCA	0.692			T	ETV4	prostate								7	27					0	0	1	0	0
ENGASE	64772	broad.mit.edu	37	17	77076405	77076405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:77076405C>T	uc002jwv.2	+	5	690	c.682C>T	c.(682-684)CGT>TGT	p.R228C	ENGASE_uc002jwu.1_Missense_Mutation_p.R228C|ENGASE_uc010wtz.1_Missense_Mutation_p.R42C|ENGASE_uc002jww.2_5'UTR	NM_001042573	NP_001036038	Q8NFI3	ENASE_HUMAN	endo-beta-N-acetylglucosaminidase	228						cytosol	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity			skin(1)	1						TCAGTTTTTTCGTTTTGATGG	0.607													12	55					0	0	1	0	0
ENGASE	64772	broad.mit.edu	37	17	77079887	77079887	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:77079887C>T	uc002jwv.2	+	10	1304	c.1296C>T	c.(1294-1296)ATC>ATT	p.I432I	ENGASE_uc002jww.2_Silent_p.I138I	NM_001042573	NP_001036038	Q8NFI3	ENASE_HUMAN	endo-beta-N-acetylglucosaminidase	432						cytosol	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity			skin(1)	1						CCCAGGAGATCCAGCCCTTGT	0.657													25	67					0	0	1	0	0
ENPP7	339221	broad.mit.edu	37	17	77708953	77708953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:77708953G>A	uc002jxa.2	+	3	531	c.511G>A	c.(511-513)GAG>AAG	p.E171K		NM_178543	NP_848638	Q6UWV6	ENPP7_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	171					negative regulation of cell proliferation|negative regulation of DNA replication|sphingomyelin metabolic process	Golgi apparatus|integral to membrane|microvillus	sphingomyelin phosphodiesterase activity			central_nervous_system(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(97;0.016)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			AAATGAGACGGAGTGGAGAGC	0.592													19	41					0	0	1	0	0
TBC1D16	125058	broad.mit.edu	37	17	77984427	77984427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:77984427G>A	uc002jxj.2	-	3	427	c.311C>T	c.(310-312)CCC>CTC	p.P104L		NM_019020	NP_061893	Q8TBP0	TBC16_HUMAN	TBC1 domain family, member 16	104						intracellular	Rab GTPase activator activity				0	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.00739)|BRCA - Breast invasive adenocarcinoma(99;0.0819)			CTTGCGAACGGGGGAGCTCTC	0.701													7	58					0	0	1	0	0
CCDC40	55036	broad.mit.edu	37	17	78073553	78073553	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:78073553C>T	uc010dht.2	+	20	3435	c.3408C>T	c.(3406-3408)CTC>CTT	p.L1136L	CCDC40_uc002jxm.3_Silent_p.L919L|CCDC40_uc002jxn.3_Silent_p.L532L|GAA_uc002jxo.2_5'Flank|GAA_uc002jxp.2_5'Flank|GAA_uc002jxq.2_5'Flank	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	1136					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			CCAACAAGCTCGAGTCACCAG	0.602													5	31					0	0	1	0	0
GAA	2548	broad.mit.edu	37	17	78081398	78081398	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:78081398C>T	uc002jxo.2	+	5	917	c.735C>T	c.(733-735)TTC>TTT	p.F245F	GAA_uc002jxp.2_Silent_p.F245F|GAA_uc002jxq.2_Silent_p.F245F	NM_001079803	NP_001073271	P10253	LYAG_HUMAN	acid alpha-glucosidase preproprotein	245					cardiac muscle contraction|diaphragm contraction|glycogen catabolic process|lysosome organization|tongue morphogenesis|vacuolar sequestering|ventricular cardiac muscle tissue morphogenesis	lysosomal membrane	carbohydrate binding|maltose alpha-glucosidase activity			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)		Acarbose(DB00284)	CGGACCAGTTCCTTCAGCTGT	0.637													24	137					0	0	1	0	0
EIF4A3	9775	broad.mit.edu	37	17	78112043	78112043	+	Silent	SNP	G	A	A	rs61756263		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:78112043G>A	uc010wuc.1	-	9	838	c.765C>T	c.(763-765)TTC>TTT	p.F255F	EIF4A3_uc002jxs.2_Silent_p.F255F	NM_014740	NP_055555	P38919	IF4A3_HUMAN	eukaryotic translation initiation factor 4A,	255	Helicase C-terminal.				mRNA transport|negative regulation of translation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation|rRNA processing	catalytic step 2 spliceosome|cytoplasm|exon-exon junction complex|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|poly(A) RNA binding|protein binding			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)			CCACTGCCACGAAAAATTGCT	0.468													14	75					0	0	1	0	0
CARD14	79092	broad.mit.edu	37	17	78162232	78162232	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:78162232G>A	uc002jxw.1	+	5	927	c.732G>A	c.(730-732)CTG>CTA	p.L244L	CARD14_uc002jxt.1_RNA|CARD14_uc002jxv.2_Silent_p.L244L|CARD14_uc010wud.1_RNA|CARD14_uc002jxx.2_Silent_p.L7L|CARD14_uc010dhu.1_Silent_p.L42L	NM_024110	NP_077015	Q9BXL6	CAR14_HUMAN	caspase recruitment domain protein 14 isoform 1	244	Potential.				activation of NF-kappaB-inducing kinase activity|positive regulation of protein phosphorylation|regulation of apoptosis	aggresome|cytoplasm|plasma membrane	CARD domain binding			ovary(4)|skin(1)	5	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.017)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			CCTGTGAGCTGGAATTGCAAG	0.587													13	27					0	0	1	0	0
SLC26A11	284129	broad.mit.edu	37	17	78196486	78196486	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:78196486C>T	uc002jyb.1	+	4	536	c.267C>T	c.(265-267)TTC>TTT	p.F89F	SGSH_uc002jxz.3_5'Flank|SGSH_uc002jya.3_5'Flank|SGSH_uc002jxy.2_5'Flank|SGSH_uc010wue.1_5'Flank|SLC26A11_uc002jyc.1_Silent_p.F89F|SLC26A11_uc002jyd.1_Silent_p.F89F|SLC26A11_uc010dhv.1_Silent_p.F89F	NM_173626	NP_775897	Q86WA9	S2611_HUMAN	solute carrier family 26, member 11	89	Helical; (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosomal membrane|plasma membrane	anion:anion antiporter activity|secondary active sulfate transmembrane transporter activity				0	all_neural(118;0.0538)		OV - Ovarian serous cystadenocarcinoma(97;0.0344)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			TGGGCTGCTTCGTGTATTTCT	0.612													12	155					0	0	1	0	0
NPTX1	4884	broad.mit.edu	37	17	78445618	78445618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:78445618C>T	uc002jyp.1	-	4	1149	c.991G>A	c.(991-993)GAT>AAT	p.D331N		NM_002522	NP_002513	Q15818	NPTX1_HUMAN	neuronal pentraxin I precursor	331	Pentaxin.				central nervous system development|synaptic transmission|transport	transport vesicle	metal ion binding				0	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0487)			TGCGTGCCATCCTGGTAGGCC	0.622													6	53					0	0	1	0	0
RPTOR	57521	broad.mit.edu	37	17	78938108	78938108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:78938108C>T	uc002jyt.1	+	34	4791	c.3986C>T	c.(3985-3987)TCG>TTG	p.S1329L	RPTOR_uc010wug.1_Missense_Mutation_p.S1171L|RPTOR_uc002jyu.1_Missense_Mutation_p.S222L	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	1329	WD 7.				cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						TCCGTGTACTCGGTGGAGAAG	0.652													10	83					0	0	1	0	0
AATK	9625	broad.mit.edu	37	17	79094044	79094044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:79094044G>A	uc010dia.2	-	11	3772	c.3692C>T	c.(3691-3693)GCC>GTC	p.A1231V	AATK_uc010dhz.2_RNA	NM_001080395	NP_001073864	Q6ZMQ8	LMTK1_HUMAN	apoptosis-associated tyrosine kinase	1231						integral to membrane|mitochondrion|perinuclear region of cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(4)|ovary(2)|lung(2)|upper_aerodigestive_tract(1)	9	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			GAAGGACACGGCCTTCTTCTT	0.677													4	35					0	0	1	0	0
SLC38A10	124565	broad.mit.edu	37	17	79219714	79219714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:79219714G>A	uc002jzz.1	-	16	3377	c.3002C>T	c.(3001-3003)CCG>CTG	p.P1001L	SLC38A10_uc002jzy.1_Missense_Mutation_p.P919L	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	1001					amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CCCGCCTCTCGGCTGCTCGTG	0.697													8	58					0	0	1	0	0
SLC38A10	124565	broad.mit.edu	37	17	79226967	79226967	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:79226967C>A	uc002jzz.1	-	12	1737	c.1362G>T	c.(1360-1362)CTG>CTT	p.L454L	SLC38A10_uc002jzy.1_Silent_p.L372L|SLC38A10_uc002kab.2_Silent_p.L454L	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	454					amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			GGGCCTGCTCCAGCTCCTCTC	0.657											OREG0024813	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	105					0.184627	0.185639	1	1	0
C17orf55	284185	broad.mit.edu	37	17	79278553	79278554	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:79278553_79278554GG>AA	uc002kac.1	-	4	1040_1041	c.611_612CC>TT	c.(610-612)CCC>CTT	p.P204L		NM_178519	NP_848614			hypothetical protein LOC284185												0	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CTCTGGTCCAGGGGCCTGGGTT	0.683													3	11					0	0	1	0	0
TMEM105	284186	broad.mit.edu	37	17	79287742	79287742	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:79287742G>A	uc002kad.1	-	3	649	c.99C>T	c.(97-99)CTC>CTT	p.L33L		NM_178520	NP_848615	Q8N8V8	TM105_HUMAN	transmembrane protein 105	33	Helical; (Potential).					integral to membrane				ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.0892)			ACCAGGTAAGGAGATAAATCA	0.587													23	76					0	0	1	0	0
ACTG1	71	broad.mit.edu	37	17	79478095	79478095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:79478095G>A	uc002kaj.1	-	4	867	c.842C>T	c.(841-843)TCC>TTC	p.S281F	ACTG1_uc002kah.1_Missense_Mutation_p.S159F|ACTG1_uc002kai.1_Missense_Mutation_p.S238F|ACTG1_uc002kak.1_Missense_Mutation_p.S281F|ACTG1_uc010wun.1_Missense_Mutation_p.S281F|ACTG1_uc002kal.1_Missense_Mutation_p.S281F|ACTG1_uc002kag.2_RNA	NM_001614	NP_001605	P63261	ACTG_HUMAN	actin, gamma 1 propeptide	281					adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol	ATP binding|identical protein binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0547)			CTTCATGATGGAGTTGAAGGT	0.562													35	88					0	0	1	0	0
P4HB	5034	broad.mit.edu	37	17	79813082	79813082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:79813082G>A	uc002kbn.1	-	4	757	c.560C>T	c.(559-561)ACT>ATT	p.T187I	P4HB_uc002kbm.1_5'UTR	NM_000918	NP_000909	P07237	PDIA1_HUMAN	prolyl 4-hydroxylase, beta subunit precursor	187					cell redox homeostasis|glycerol ether metabolic process|lipid metabolic process|lipoprotein metabolic process|peptidyl-proline hydroxylation to 4-hydroxy-L-proline	cell surface|endoplasmic reticulum lumen|ER-Golgi intermediate compartment|extracellular region|melanosome|plasma membrane	electron carrier activity|procollagen-proline 4-dioxygenase activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0509)			ACTGTTGGAAGTGATCCCAAA	0.532													19	247					0	0	1	0	0
ARHGDIA	396	broad.mit.edu	37	17	79827768	79827768	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:79827768C>T	uc002kbp.2	-	1	78	c.39G>A	c.(37-39)CAG>CAA	p.Q13Q	ARHGDIA_uc002kjk.1_5'Flank|ARHGDIA_uc002kbq.2_Silent_p.Q13Q|ARHGDIA_uc002kbr.2_Silent_p.Q13Q|ARHGDIA_uc002kbs.1_Silent_p.Q13Q|ARHGDIA_uc002kbt.1_Silent_p.Q13Q|ARHGDIA_uc010dig.1_RNA	NM_004309	NP_004300	P52565	GDIR1_HUMAN	Rho GDP dissociation inhibitor (GDI) alpha	13					anti-apoptosis|cellular component movement|negative regulation of axonogenesis|negative regulation of cell adhesion|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis|regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytoskeleton|cytosol	GTPase activator activity|identical protein binding|Rho GDP-dissociation inhibitor activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			CCGCTGCAATCTGGGCCAGCT	0.632													6	53					0	0	1	0	0
NOTUM	147111	broad.mit.edu	37	17	79910844	79910844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:79910844C>T	uc010wvg.1	-	11	1756	c.1484G>A	c.(1483-1485)GGA>GAA	p.G495E		NM_178493	NP_848588	Q6P988	NOTUM_HUMAN	notum pectinacetylesterase homolog precursor	495						extracellular region	hydrolase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			TGCCTAGCTTCCGTTGCTCAG	0.672													9	137					0	0	1	0	0
ASPSCR1	79058	broad.mit.edu	37	17	79954661	79954661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:79954661C>T	uc002kcx.2	+	7	969	c.872C>T	c.(871-873)CCC>CTC	p.P291L	ASPSCR1_uc002kcw.1_Missense_Mutation_p.P291L|ASPSCR1_uc002kcy.2_Missense_Mutation_p.P291L|ASPSCR1_uc002kcz.2_Missense_Mutation_p.P185L|ASPSCR1_uc002kda.2_Missense_Mutation_p.P214L|ASPSCR1_uc002kdb.1_Missense_Mutation_p.P214L	NM_024083	NP_076988	Q9BZE9	ASPC1_HUMAN	alveolar soft part sarcoma chromosome region,	291							protein binding		ASPSCR1/TFE3(161)	soft_tissue(118)|kidney(43)|breast(1)	162	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			GGCCAGGATCCCCagcaggag	0.423			T	TFE3	alveolar soft part sarcoma								18	95					0	0	1	0	0
LRRC45	201255	broad.mit.edu	37	17	79984867	79984867	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:79984867C>A	uc002kde.2	+	6	994	c.754C>A	c.(754-756)CGG>AGG	p.R252R		NM_144999	NP_659436	Q96CN5	LRC45_HUMAN	leucine rich repeat containing 45	252	Potential.					centrosome				pancreas(1)	1	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			CCAGCACCTCCGGGAGGAGAA	0.637													3	18					1	1	1	1	0
FASN	2194	broad.mit.edu	37	17	80040808	80040808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:80040808G>A	uc002kdu.2	-	33	5866	c.5749C>T	c.(5749-5751)CGC>TGC	p.R1917C	FASN_uc002kdv.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1917	Beta-ketoacyl reductase (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	ATCCCGGAGCGAGAAGTCAAC	0.647													7	21					0	0	1	0	0
C17orf101	79701	broad.mit.edu	37	17	80373278	80373278	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:80373278G>A	uc002keu.1	-	2	401	c.300C>T	c.(298-300)TTC>TTT	p.F100F	C17orf101_uc002ket.1_Silent_p.F100F|C17orf101_uc010dip.1_Intron|HEXDC_uc002kev.3_5'Flank|HEXDC_uc010diq.2_5'Flank	NM_024648	NP_078924	Q6PK18	CQ101_HUMAN	hypothetical protein LOC79701 isoform 1	100	Lumenal (Potential).					integral to membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)	1						AACTACCTTCGAACCTGCGGT	0.567													11	160					0	0	1	0	0
HEXDC	284004	broad.mit.edu	37	17	80395114	80395114	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:80395114C>T	uc002kew.2	+	7	825	c.774C>T	c.(772-774)GCC>GCT	p.A258A	HEXDC_uc002kev.3_Silent_p.A258A|HEXDC_uc010diq.2_Silent_p.A258A|HEXDC_uc010wvm.1_RNA|HEXDC_uc010wvn.1_Silent_p.A21A			Q8WVB3	HEXDC_HUMAN	SubName: Full=Hexosaminidase (Glycosyl hydrolase family 20, catalytic domain) containing, isoform CRA_c; SubName: Full=Hexosaminidase D;	258					carbohydrate metabolic process	cytoplasm|nucleus	beta-N-acetylhexosaminidase activity|cation binding			ovary(1)|skin(1)	2	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			TCAAGGGTGCCACGGGGCCCA	0.667													9	142					0	0	1	0	0
NARF	26502	broad.mit.edu	37	17	80445839	80445839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:80445839G>A	uc002kfg.3	+	11	1317	c.1177G>A	c.(1177-1179)GAT>AAT	p.D393N	NARF_uc002kff.3_Missense_Mutation_p.D334N|NARF_uc010dit.2_Missense_Mutation_p.D439N|NARF_uc002kfj.3_Missense_Mutation_p.D345N|NARF_uc002kfi.3_RNA|NARF_uc002kfh.3_Missense_Mutation_p.D439N|NARF_uc002kfk.2_RNA	NM_012336	NP_036468	Q9UHQ1	NARF_HUMAN	nuclear prelamin A recognition factor isoform a	393						lamin filament	lamin binding			skin(1)	1	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			CGGACATGCGGATAAGGCCCT	0.483													19	66					0	0	1	0	0
FN3KRP	79672	broad.mit.edu	37	17	80684936	80684936	+	Silent	SNP	C	T	T	rs148008327	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:80684936C>T	uc002kfu.2	+	6	869	c.819C>T	c.(817-819)TTC>TTT	p.F273F	FN3KRP_uc010wvr.1_Silent_p.F223F	NM_024619	NP_078895	Q9HA64	KT3K_HUMAN	fructosamine 3 kinase related protein	273							kinase activity				0	Breast(20;0.000523)|all_neural(118;0.0952)		BRCA - Breast invasive adenocarcinoma(99;0.0344)|OV - Ovarian serous cystadenocarcinoma(97;0.061)			CCCCAGGATTCGAGAAGCGCC	0.512													13	90					0	0	1	0	0
ZNF750	79755	broad.mit.edu	37	17	80788178	80788178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:80788178C>T	uc002kga.2	-	3	2323	c.2012G>A	c.(2011-2013)AGC>AAC	p.S671N	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	671						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			CTCCATGGAGCTCAGTGTGGG	0.607													5	112					0	0	1	0	0
ZNF750	79755	broad.mit.edu	37	17	80788344	80788344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:80788344C>T	uc002kga.2	-	3	2157	c.1846G>A	c.(1846-1848)GAG>AAG	p.E616K	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	616						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GGAGCCTCCTCGCCGGGGCCT	0.682													6	65					0	0	1	0	0
ZNF750	79755	broad.mit.edu	37	17	80789330	80789330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:80789330C>T	uc002kga.2	-	2	1312	c.1001G>A	c.(1000-1002)AGA>AAA	p.R334K	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	334						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			AGGTGGGAGTCTGAGACCATA	0.512													22	195					0	0	1	0	0
TBCD	6904	broad.mit.edu	37	17	80887143	80887143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:80887143C>T	uc002kfz.2	+	31	2978	c.2848C>T	c.(2848-2850)CCC>TCC	p.P950S	TBCD_uc002kfy.1_Missense_Mutation_p.P950S|TBCD_uc002kgb.1_Missense_Mutation_p.P275S|TBCD_uc002kgc.2_Missense_Mutation_p.P95S|TBCD_uc002kgd.2_5'Flank	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	950					'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			AAAGCTGTTTCCCAGGTACTG	0.637													4	25					0	0	1	0	0
B3GNTL1	146712	broad.mit.edu	37	17	80963040	80963040	+	Missense_Mutation	SNP	C	T	T	rs142855993	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:80963040C>T	uc002kgg.1	-	6	469	c.455G>A	c.(454-456)CGA>CAA	p.R152Q	B3GNTL1_uc002kgf.1_Missense_Mutation_p.R41Q|B3GNTL1_uc002kge.1_RNA	NM_001009905	NP_001009905	Q67FW5	B3GNL_HUMAN	UDP-GlcNAc:betaGal	152							transferase activity, transferring glycosyl groups			ovary(1)|pancreas(1)	2	Breast(20;0.000443)|all_neural(118;0.0779)	all_cancers(8;0.0396)|all_epithelial(8;0.0556)	BRCA - Breast invasive adenocarcinoma(99;0.0517)|OV - Ovarian serous cystadenocarcinoma(97;0.0868)			ACGTGTGTATCGTTCGGTGGA	0.572													17	145					0	0	1	0	0
COLEC12	81035	broad.mit.edu	37	18	347136	347136	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:347136G>A	uc002kkm.2	-	5	701	c.486C>T	c.(484-486)TTC>TTT	p.F162F		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	162	Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				TGGTGATGAGGAAAGAGTTAT	0.488													15	73					0	0	1	0	0
YES1	7525	broad.mit.edu	37	18	756658	756658	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:756658A>G	uc002kky.2	-	2	391	c.170T>C	c.(169-171)CTT>CCT	p.L57P	YES1_uc002kkz.2_Missense_Mutation_p.L57P	NM_005433	NP_005424	P07947	YES_HUMAN	viral oncogene yes-1 homolog 1	57					blood coagulation|leukocyte migration|regulation of vascular permeability|T cell costimulation	cytosol|plasma membrane	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|ovary(1)	3					Dasatinib(DB01254)	TGTCATGGAAAGACTGCTGAA	0.473													19	115					0	0	1	0	0
ADCYAP1	116	broad.mit.edu	37	18	905403	905403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:905403G>A	uc010dkg.2	+	2	135	c.16G>A	c.(16-18)GGA>AGA	p.G6R	ADCYAP1_uc010dkh.2_Missense_Mutation_p.G6R	NM_001099733	NP_001093203	P18509	PACA_HUMAN	adenylate cyclase activating polypeptide	6					activation of adenylate cyclase activity|cell-cell signaling|female pregnancy|nerve growth factor receptor signaling pathway|regulation of G-protein coupled receptor protein signaling pathway	extracellular region|soluble fraction	neuropeptide hormone activity|peptide hormone receptor binding				0						CATGTGTAGCGGAGCGAGGCT	0.617													5	88					0	0	1	0	0
ADCYAP1	116	broad.mit.edu	37	18	905492	905492	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:905492G>A	uc010dkg.2	+	2	224	c.105G>A	c.(103-105)GGG>GGA	p.G35G	ADCYAP1_uc010dkh.2_Silent_p.G35G	NM_001099733	NP_001093203	P18509	PACA_HUMAN	adenylate cyclase activating polypeptide	35					activation of adenylate cyclase activity|cell-cell signaling|female pregnancy|nerve growth factor receptor signaling pathway|regulation of G-protein coupled receptor protein signaling pathway	extracellular region|soluble fraction	neuropeptide hormone activity|peptide hormone receptor binding				0						GGTTCCCCGGGATCAGGTAGG	0.642													9	35					0	0	1	0	0
SMCHD1	23347	broad.mit.edu	37	18	2722564	2722564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:2722564C>T	uc002klm.3	+	20	2695	c.2506C>T	c.(2506-2508)CGT>TGT	p.R836C	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_Intron	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	836					chromosome organization		ATP binding				0						TCTTCCTTTTCGTGTTGGAGT	0.373													4	46					0	0	1	0	0
EMILIN2	84034	broad.mit.edu	37	18	2891091	2891091	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:2891091C>T	uc002kln.2	+	4	1125	c.966C>T	c.(964-966)ATC>ATT	p.I322I		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	322	Potential.				cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		ACAGTAAGATCGACGCCCTGA	0.562													5	78					0	0	1	0	0
MYOM1	8736	broad.mit.edu	37	18	3067449	3067449	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:3067449G>A	uc002klp.2	-	38	5203	c.4869C>T	c.(4867-4869)TTC>TTT	p.F1623F	MYOM1_uc002klq.2_Silent_p.F1527F	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	1623	Ig-like C2-type 5.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						TCCCAGCCTCGAACTTGAGGT	0.582													8	48					0	0	1	0	0
MYOM1	8736	broad.mit.edu	37	18	3067525	3067525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:3067525C>T	uc002klp.2	-	38	5127	c.4793G>A	c.(4792-4794)GGA>GAA	p.G1598E	MYOM1_uc002klq.2_Missense_Mutation_p.G1502E	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	1598	Ig-like C2-type 5.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						AGGCGGGTCTCCCCACACGTT	0.527													4	40					0	0	1	0	0
EPB41L3	23136	broad.mit.edu	37	18	5396314	5396314	+	Silent	SNP	C	T	T	rs148045283	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:5396314C>T	uc002kmt.1	-	19	2945	c.2859G>A	c.(2857-2859)ACG>ACA	p.T953T	EPB41L3_uc010wzh.1_Silent_p.T784T|EPB41L3_uc002kmu.1_Silent_p.T731T|EPB41L3_uc010dkq.1_Silent_p.T622T|EPB41L3_uc002kms.1_Silent_p.T188T|EPB41L3_uc010wze.1_Silent_p.T258T|EPB41L3_uc010wzf.1_Silent_p.T250T|EPB41L3_uc010wzg.1_Silent_p.T225T|EPB41L3_uc010dkr.2_Silent_p.T345T	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	953	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						TGATGGTTTCCGTCTTCACCG	0.453													10	60					0	0	1	0	0
EPB41L3	23136	broad.mit.edu	37	18	5415827	5415827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:5415827G>A	uc002kmt.1	-	13	2143	c.2057C>T	c.(2056-2058)TCA>TTA	p.S686L	EPB41L3_uc010wzh.1_Intron|EPB41L3_uc002kmu.1_Intron|EPB41L3_uc010dkq.1_Intron|EPB41L3_uc002kms.1_Intron|EPB41L3_uc010wze.1_Intron|EPB41L3_uc010wzf.1_Intron|EPB41L3_uc010wzg.1_Intron|EPB41L3_uc010dkr.2_Intron	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	686	Spectrin--actin-binding (Potential).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						CTCTTCCTCTGAACTGTCACT	0.577													13	45					0	0	1	0	0
EPB41L3	23136	broad.mit.edu	37	18	5489133	5489133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:5489133G>A	uc002kmt.1	-	2	136	c.50C>T	c.(49-51)GCC>GTC	p.A17V	EPB41L3_uc010wzh.1_Missense_Mutation_p.A17V|EPB41L3_uc002kmu.1_Missense_Mutation_p.A17V|EPB41L3_uc010dkq.1_5'UTR|EPB41L3_uc010dks.1_Missense_Mutation_p.A39V|EPB41L3_uc002kmv.1_5'UTR	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	17					cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						CTGGGGCTCGGCCTCCTGGTC	0.512													7	48					0	0	1	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6243370	6243370	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:6243370C>T	uc002kmz.3	-	7	543	c.383G>A	c.(382-384)TGG>TAG	p.W128*	L3MBTL4_uc010dkt.2_Nonsense_Mutation_p.W128*|L3MBTL4_uc002kmy.3_5'Flank	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	128	MBT 1.				chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				AGCATTGGTCCAAAAATCATA	0.388													5	53					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	6958515	6958515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:6958515G>A	uc002knm.2	-	55	8019	c.7925C>T	c.(7924-7926)TCG>TTG	p.S2642L	LAMA1_uc002knk.2_5'Flank|LAMA1_uc002knl.2_Missense_Mutation_p.S95L|LAMA1_uc010wzj.1_Missense_Mutation_p.S2118L	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2642	Laminin G-like 3.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCCATGGAACGATCTTCTCAT	0.463													6	44					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	6982579	6982579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:6982579G>A	uc002knm.2	-	41	5901	c.5807C>T	c.(5806-5808)TCC>TTC	p.S1936F	LAMA1_uc010wzj.1_Missense_Mutation_p.S1412F	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1936	Domain II and I.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGAAACAAGGGATTCTGAGAG	0.552													10	104					0	0	1	0	0
LRRC30	339291	broad.mit.edu	37	18	7231186	7231186	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:7231186G>A	uc010wzk.1	+	1	50	c.50G>A	c.(49-51)AGG>AAG	p.R17K		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	17										ovary(1)|liver(1)	2						GGCCCCAAGAGGATGCTGTTC	0.632													4	67					0	0	1	0	0
PTPRM	5797	broad.mit.edu	37	18	7949229	7949229	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:7949229C>T	uc002knn.3	+	6	1217	c.714C>T	c.(712-714)TCC>TCT	p.S238S	PTPRM_uc010dkv.2_Silent_p.S238S|PTPRM_uc010wzl.1_Silent_p.S25S	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	238	Ig-like C2-type.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				TGACCAGCTCCCGACGCTTCA	0.468													4	43					0	0	1	0	0
KIAA0802	23255	broad.mit.edu	37	18	8798182	8798182	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:8798182C>T	uc002knr.2	+	10	2471	c.2329C>T	c.(2329-2331)CGA>TGA	p.R777*	KIAA0802_uc002knq.2_Nonsense_Mutation_p.R736*|KIAA0802_uc002kns.2_Nonsense_Mutation_p.R107*	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1087											0						CGACAGTGACCGAGGCTGTGG	0.652													9	55					0	0	1	0	0
FAM38B	63895	broad.mit.edu	37	18	10696236	10696236	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:10696236G>A	uc002kor.3	-	5	698	c.558C>T	c.(556-558)GTC>GTT	p.V186V	FAM38B_uc002koq.2_Silent_p.V84V	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2229						integral to membrane	ion channel activity			ovary(1)	1						ACGGCCCCGGGACCTGGTCCT	0.532													8	32					0	0	1	0	0
MPPE1	65258	broad.mit.edu	37	18	11889433	11889433	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:11889433T>C	uc002kqf.2	-	5	1088	c.447A>G	c.(445-447)GTA>GTG	p.V149V	MPPE1_uc002kqn.2_Silent_p.V149V|MPPE1_uc002kqg.2_RNA|MPPE1_uc002kqh.2_RNA|MPPE1_uc002kqi.2_RNA|MPPE1_uc002kqj.2_Silent_p.V149V|MPPE1_uc002kqk.2_Silent_p.V149V|MPPE1_uc002kql.2_Silent_p.V149V|MPPE1_uc002kqm.2_Silent_p.V149V|MPPE1_uc010dla.1_Silent_p.V149V	NM_023075	NP_075563	Q53F39	MPPE1_HUMAN	metallophosphoesterase 1 precursor	149					ER to Golgi vesicle-mediated transport|GPI anchor biosynthetic process	cis-Golgi network|endoplasmic reticulum exit site|ER-Golgi intermediate compartment membrane|integral to membrane	GPI anchor binding|manganese ion binding|phosphoric diester hydrolase activity				0						CCTTCAGCTGTACATGACTTG	0.468													7	56					0	0	1	0	0
AFG3L2	10939	broad.mit.edu	37	18	12356714	12356714	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:12356714G>A	uc002kqz.1	-	9	1256	c.1143C>T	c.(1141-1143)TTC>TTT	p.F381F		NM_006796	NP_006787	Q9Y4W6	AFG32_HUMAN	AFG3 ATPase family gene 3-like 2	381					cell death|protein catabolic process|proteolysis	integral to membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0					Adenosine triphosphate(DB00171)	CCACACCAACGAACATCTCCA	0.542													11	68					0	0	1	0	0
SEH1L	81929	broad.mit.edu	37	18	12984110	12984110	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:12984110C>T	uc002krr.2	+	8	1129	c.991C>T	c.(991-993)CAG>TAG	p.Q331*	SEH1L_uc002krq.2_Nonsense_Mutation_p.Q331*	NM_031216	NP_112493	Q96EE3	SEH1_HUMAN	sec13-like protein isoform 2	331					attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|carbohydrate metabolic process|cell division|glucose transport|mitotic metaphase plate congression|mitotic prometaphase|mRNA transport|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex					0						TGGGAGTTCTCAGCAGGGAAC	0.398													5	53					0	0	1	0	0
CEP192	55125	broad.mit.edu	37	18	13056459	13056459	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:13056459C>T	uc010xac.1	+	19	3950	c.3870C>T	c.(3868-3870)TTC>TTT	p.F1290F	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Silent_p.F815F|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_5'UTR|CEP192_uc002krs.1_Silent_p.F1031F	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	1290										ovary(4)|pancreas(1)	5						TCTGTGGCTTCTCAGGAGGCC	0.547													7	30					0	0	1	0	0
C18orf19	125228	broad.mit.edu	37	18	13666501	13666501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:13666501G>A	uc010dlh.2	-	5	1229	c.797C>T	c.(796-798)TCC>TTC	p.S266F	C18orf19_uc010dlg.2_3'UTR|C18orf19_uc010dli.2_Missense_Mutation_p.S266F|C18orf19_uc002ksj.3_Missense_Mutation_p.S266F|C18orf19_uc010dlj.2_RNA	NM_001098801	NP_001092271	Q96ND0	CR019_HUMAN	hypothetical protein LOC125228	266	Potential.					integral to membrane				breast(2)	2						TTTCTTAAAGGAAACTTTTTC	0.358													5	25					0	0	1	0	0
ZNF519	162655	broad.mit.edu	37	18	14124359	14124359	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:14124359G>A	uc002kst.1	-	2	273	c.120C>T	c.(118-120)CTC>CTT	p.L40L	ZNF519_uc002ksq.1_RNA|ZNF519_uc002ksr.1_Intron|ZNF519_uc010dlm.1_RNA	NM_145287	NP_660330	Q8TB69	ZN519_HUMAN	zinc finger protein 519	40	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCAGGGAGACGAGGTTTCTGT	0.413													4	41					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14542672	14542672	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:14542672G>C	uc010dln.2	-	1	928	c.474C>G	c.(472-474)ATC>ATG	p.I158M	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	158	ANK 1.									skin(3)	3						TGAGCATGACGATGAGATCCT	0.582													18	126					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14542880	14542880	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:14542880G>A	uc010dln.2	-	1	720	c.266C>T	c.(265-267)TCC>TTC	p.S89F	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	89										skin(3)	3						CTTCATAAAGGAGTTGTCATG	0.607													9	122					0	0	1	0	0
RBBP8	5932	broad.mit.edu	37	18	20570923	20570923	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:20570923C>T	uc002ktw.2	+	10	1162	c.831C>T	c.(829-831)CCC>CCT	p.P277P	RBBP8_uc002kty.2_Silent_p.P277P|RBBP8_uc002ktz.2_Silent_p.P277P|RBBP8_uc002kua.2_Silent_p.P277P|RBBP8_uc002ktx.1_Silent_p.P277P	NM_002894	NP_002885	Q99708	COM1_HUMAN	retinoblastoma binding protein 8 isoform a	277					cell cycle checkpoint|DNA double-strand break processing involved in repair via single-strand annealing|meiosis|regulation of transcription from RNA polymerase II promoter	nucleus	damaged DNA binding|protein binding|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)|lung(1)|skin(1)	3	all_cancers(21;4.34e-05)|all_epithelial(16;8.3e-07)|Lung NSC(20;0.0107)|Colorectal(14;0.0202)|all_lung(20;0.0291)|Ovarian(20;0.19)		OV - Ovarian serous cystadenocarcinoma(1;0.00196)			CCATGAGCCCCCTTGGTGATG	0.284								Direct_reversal_of_damage|Homologous_recombination					5	15					0	0	1	0	0
NPC1	4864	broad.mit.edu	37	18	21123466	21123466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:21123466G>A	uc002kum.3	-	14	2472	c.2198C>T	c.(2197-2199)CCC>CTC	p.P733L	NPC1_uc010xaz.1_Missense_Mutation_p.P466L|NPC1_uc010xba.1_Missense_Mutation_p.P578L	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	733	SSD.				autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					GAACATACTGGGAGCCACTTC	0.428													6	77					0	0	1	0	0
NPC1	4864	broad.mit.edu	37	18	21136323	21136323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:21136323G>A	uc002kum.3	-	8	1484	c.1210C>T	c.(1210-1212)CGG>TGG	p.R404W	NPC1_uc010xaz.1_Missense_Mutation_p.R205W|NPC1_uc010xba.1_Missense_Mutation_p.R249W	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	404			R -> W (in NPC1).|R -> P (in NPC1).|R -> Q (in NPC1).		autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					TGCTCCGTCCGGAAGAAAGGC	0.562													8	42					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21534491	21534491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:21534491C>T	uc002kuq.2	+	75	9967	c.9881C>T	c.(9880-9882)CCT>CTT	p.P3294L	LAMA3_uc002kur.2_Missense_Mutation_p.P3238L|LAMA3_uc002kus.3_Missense_Mutation_p.P1685L|LAMA3_uc002kut.3_Missense_Mutation_p.P1629L	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	3294	Laminin G-like 5.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTGAGGATCCCTGTGTGGAAA	0.453													7	29					0	0	1	0	0
TTC39C	125488	broad.mit.edu	37	18	21703848	21703848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:21703848G>A	uc002kuw.2	+	9	1689	c.1237G>A	c.(1237-1239)GAA>AAA	p.E413K	TTC39C_uc002kuu.2_Missense_Mutation_p.E352K	NM_001135993	NP_001129465	Q8N584	TT39C_HUMAN	tetratricopeptide repeat domain 39C isoform 1	413							binding			ovary(1)	1						TGTCTTTAAAGAAGTTCAGAA	0.383													3	17					0	0	1	0	0
CABYR	26256	broad.mit.edu	37	18	21735683	21735683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:21735683G>A	uc002kux.2	+	4	370	c.218G>A	c.(217-219)GGA>GAA	p.G73E	CABYR_uc010xbb.1_5'UTR|CABYR_uc002kuy.2_Missense_Mutation_p.G73E|CABYR_uc002kuz.2_Missense_Mutation_p.G73E|CABYR_uc002kva.2_Missense_Mutation_p.G55E|CABYR_uc002kvb.2_5'UTR|CABYR_uc002kvc.2_Missense_Mutation_p.G73E|CABYR_uc010dlw.2_RNA	NM_012189	NP_036321	O75952	CABYR_HUMAN	calcium-binding tyrosine	73					ciliary or flagellar motility|signal transduction|sperm capacitation	cytoplasm|cytoskeleton|flagellum|motile cilium|nucleus	calcium ion binding|cAMP-dependent protein kinase regulator activity|enzyme binding|protein heterodimerization activity|SH3 domain binding				0	all_cancers(21;9.13e-05)|all_epithelial(16;5.49e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0305)|Ovarian(20;0.17)					TGGTCAGAAGGAACGACACCA	0.323													5	49					0	0	1	0	0
OSBPL1A	114876	broad.mit.edu	37	18	21743222	21743222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:21743222G>A	uc002kve.2	-	28	2948	c.2774C>T	c.(2773-2775)CCC>CTC	p.P925L	OSBPL1A_uc002kvd.2_Missense_Mutation_p.P412L|OSBPL1A_uc010xbc.1_Missense_Mutation_p.P543L	NM_080597	NP_542164	Q9BXW6	OSBL1_HUMAN	oxysterol-binding protein-like 1A isoform B	925					cholesterol metabolic process|lipid transport|vesicle-mediated transport		phospholipid binding			ovary(4)	4	all_cancers(21;0.000396)|all_epithelial(16;4.36e-06)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0505)|Ovarian(20;0.17)					TCCATTGTAGGGATTAGGACC	0.408													3	34					0	0	1	0	0
CDH2	1000	broad.mit.edu	37	18	25570308	25570308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:25570308C>T	uc002kwg.2	-	10	1810	c.1351G>A	c.(1351-1353)GAC>AAC	p.D451N	CDH2_uc010xbn.1_Missense_Mutation_p.D420N	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	451	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						GTTTCAAAGTCGATTGGCTGG	0.393													5	28					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28739452	28739453	+	Missense_Mutation	DNP	AG	CT	CT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:28739452_28739453AG>CT	uc002kwn.2	-	2	365_366	c.103_104CT>AG	c.(103-105)CTT>AGT	p.L35S	DSC1_uc002kwm.2_Missense_Mutation_p.L35S	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	35					homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			AGGAACTCGAAGATAAACTTTC	0.332													4	30					0	0	1	0	0
DSG1	1828	broad.mit.edu	37	18	28934682	28934682	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:28934682C>T	uc002kwp.2	+	15	2735	c.2523C>T	c.(2521-2523)TAC>TAT	p.Y841Y	DSG1_uc010xbp.1_Silent_p.Y200Y	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	841	Desmoglein repeat 2.|Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			CCGAGTCTTACACCACCTCTG	0.527													6	115					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29054225	29054225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:29054225G>A	uc002kws.2	+	15	2352	c.2243G>A	c.(2242-2244)GGA>GAA	p.G748E	DSG3_uc002kwt.2_Missense_Mutation_p.G30E	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	748	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GCTGCTTCAGGATTCGGAGCA	0.532													6	23					0	0	1	0	0
MEP1B	4225	broad.mit.edu	37	18	29797906	29797906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:29797906G>A	uc002kxj.3	+	14	2116	c.2069G>A	c.(2068-2070)CGA>CAA	p.R690Q		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	690	Cytoplasmic (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						AGCTCAAATCGACCAAATTTG	0.383													6	25					0	0	1	0	0
FAM59A	64762	broad.mit.edu	37	18	29848134	29848134	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:29848134G>A	uc002kxl.2	-	6	2387	c.2331C>T	c.(2329-2331)TTC>TTT	p.F777F	FAM59A_uc002kxk.1_Silent_p.F776F	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	777										ovary(1)|skin(1)	2						AGGAGGCAGAGAAGATGTCCT	0.552													7	30					0	0	1	0	0
FAM59A	64762	broad.mit.edu	37	18	29867026	29867026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:29867026G>A	uc002kxl.2	-	4	1590	c.1534C>T	c.(1534-1536)CCT>TCT	p.P512S	FAM59A_uc002kxk.1_Missense_Mutation_p.P512S	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	512	Pro-rich.									ovary(1)|skin(1)	2						GGAGGTGGAGGTAGGGCAGTA	0.493													7	55					0	0	1	0	0
FAM59A	64762	broad.mit.edu	37	18	29867768	29867768	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:29867768G>A	uc002kxl.2	-	4	848	c.792C>T	c.(790-792)TTC>TTT	p.F264F	FAM59A_uc002kxk.1_Silent_p.F264F	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	264	CABIT.									ovary(1)|skin(1)	2						CCTCACGGATGAAGTGGAGGT	0.537													10	97					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31318740	31318740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:31318740G>A	uc010dmg.1	+	11	1427	c.1372G>A	c.(1372-1374)GTA>ATA	p.V458I	ASXL3_uc002kxq.2_Missense_Mutation_p.V165I	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	458					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TGCAGAAGAGGTAGAGACTAG	0.388													6	34					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31319674	31319674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:31319674G>A	uc010dmg.1	+	11	2361	c.2306G>A	c.(2305-2307)AGA>AAA	p.R769K	ASXL3_uc002kxq.2_Missense_Mutation_p.R476K	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	769	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CATCAGCAAAGAAAGTCACCT	0.478													6	43					0	0	1	0	0
FHOD3	80206	broad.mit.edu	37	18	34298119	34298119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:34298119C>T	uc002kzt.1	+	15	2379	c.2282C>T	c.(2281-2283)TCC>TTC	p.S761F	FHOD3_uc002kzs.1_Missense_Mutation_p.S778F|FHOD3_uc010dmz.1_Missense_Mutation_p.S493F|FHOD3_uc010dna.1_Missense_Mutation_p.S81F	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	761					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				GGGAGAGGTTCCATCTCCCCT	0.547													12	91					0	0	1	0	0
SETBP1	26040	broad.mit.edu	37	18	42532996	42532996	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:42532996C>T	uc010dni.2	+	4	3987	c.3691C>T	c.(3691-3693)CTG>TTG	p.L1231L		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	1231						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		GGTGGACACCCTGTCTACACT	0.517									Schinzel-Giedion_syndrome				3	14					0	0	1	0	0
KIAA1632	57724	broad.mit.edu	37	18	43435585	43435585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:43435585G>A	uc002lbm.2	-	43	7610	c.7510C>T	c.(7510-7512)CGT>TGT	p.R2504C		NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	2504					autophagy						0						GGCCTCAAACGGATCTGATCT	0.483													5	36					0	0	1	0	0
KIAA1632	57724	broad.mit.edu	37	18	43437823	43437823	+	Silent	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:43437823A>T	uc002lbm.2	-	42	7537	c.7437T>A	c.(7435-7437)TCT>TCA	p.S2479S	KIAA1632_uc010xcq.1_Silent_p.S1033S|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Silent_p.S1354S	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	2479					autophagy						0						CTTACCTGTTAGACAAAGGCG	0.493													6	46					0	0	1	0	0
KIAA1632	57724	broad.mit.edu	37	18	43446795	43446795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:43446795G>A	uc002lbm.2	-	38	6689	c.6589C>T	c.(6589-6591)CTT>TTT	p.L2197F	KIAA1632_uc010xcq.1_Missense_Mutation_p.L751F|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Missense_Mutation_p.L1072F	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	2197					autophagy						0						GGAATAGAAAGGCCCGCAGAC	0.438													9	97					0	0	1	0	0
ST8SIA5	29906	broad.mit.edu	37	18	44260065	44260065	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:44260065G>A	uc002lcj.1	-	7	1639	c.1071C>T	c.(1069-1071)TTC>TTT	p.F357F	ST8SIA5_uc002lci.1_Silent_p.F204F|ST8SIA5_uc010xcy.1_Silent_p.F393F|ST8SIA5_uc010xcz.1_Silent_p.F326F	NM_013305	NP_037437	O15466	SIA8E_HUMAN	ST8 alpha-N-acetyl-neuraminide	357	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane				upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						GCAAGTGCAGGAAGTTGAAGA	0.642													4	73					0	0	1	0	0
ST8SIA5	29906	broad.mit.edu	37	18	44260362	44260362	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:44260362G>A	uc002lcj.1	-	7	1342	c.774C>T	c.(772-774)TCC>TCT	p.S258S	ST8SIA5_uc002lci.1_Silent_p.S105S|ST8SIA5_uc010xcy.1_Silent_p.S294S|ST8SIA5_uc010xcz.1_Silent_p.S227S	NM_013305	NP_037437	O15466	SIA8E_HUMAN	ST8 alpha-N-acetyl-neuraminide	258	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane				upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						TGACGCGGATGGACACGTCGG	0.607													3	29					0	0	1	0	0
KATNAL2	83473	broad.mit.edu	37	18	44580782	44580782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:44580782C>T	uc002lco.2	+	3	283	c.89C>T	c.(88-90)CCG>CTG	p.P30L	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lcp.3_Intron	NM_031303	NP_112593	Q8IYT4	KATL2_HUMAN	katanin p60 subunit A-like 2	102						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						AATAATTTACCGCAAAGAAGT	0.388													6	102					0	0	1	0	0
KIAA0427	9811	broad.mit.edu	37	18	46385867	46385867	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:46385867G>C	uc002ldc.2	+	12	2019	c.1734G>C	c.(1732-1734)TGG>TGC	p.W578C	KIAA0427_uc002ldd.2_Missense_Mutation_p.W580C|KIAA0427_uc002lde.3_Missense_Mutation_p.W207C	NM_014772	NP_055587	O43310	CTIF_HUMAN	hypothetical protein LOC9811 isoform 1	578					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational initiation	perinuclear region of cytoplasm	protein binding				0						CTAACAGCTGGAACCCTCTGA	0.642													8	59					0	0	1	0	0
SMAD7	4092	broad.mit.edu	37	18	46474785	46474785	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:46474785G>A	uc002ldg.2	-	2	923	c.636C>T	c.(634-636)TCC>TCT	p.S212S	SMAD7_uc010xde.1_5'UTR	NM_005904	NP_005895	O15105	SMAD7_HUMAN	SMAD family member 7	212	Important for interaction with SMURF2.				adherens junction assembly|artery morphogenesis|BMP signaling pathway|cellular protein complex localization|negative regulation of BMP signaling pathway|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of peptidyl-serine phosphorylation|negative regulation of peptidyl-threonine phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription by competitive promoter binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of ubiquitin-protein ligase activity|pathway-restricted SMAD protein phosphorylation|positive regulation of anti-apoptosis|positive regulation of cell-cell adhesion|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein stabilization|regulation of activin receptor signaling pathway|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	centrosome|cytosol|nucleolus|plasma membrane|transcription factor complex	activin binding|beta-catenin binding|I-SMAD binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding				0	Colorectal(1;0.0518)					TCGGGTATCTGGAGTAAGGAG	0.393													4	61					0	0	1	0	0
LIPG	9388	broad.mit.edu	37	18	47113180	47113180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:47113180C>T	uc002ldv.2	+	9	1693	c.1441C>T	c.(1441-1443)CGC>TGC	p.R481C	LIPG_uc010xdh.1_Missense_Mutation_p.R407C	NM_006033	NP_006024	Q9Y5X9	LIPE_HUMAN	endothelial lipase precursor	481	PLAT.				cholesterol homeostasis|high-density lipoprotein particle remodeling|phospholipid catabolic process|phospholipid homeostasis|positive regulation of cholesterol transport|positive regulation of high-density lipoprotein particle clearance|reverse cholesterol transport	extracellular space	heparin binding|lipoprotein lipase activity|phospholipase A1 activity|protein binding|triglyceride lipase activity			ovary(1)|skin(1)	2						GCTCTGGTTTCGCAAGTGTCG	0.478													12	46					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47390724	47390724	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:47390724T>A	uc002leb.2	-	28	3918	c.3630A>T	c.(3628-3630)AAA>AAT	p.K1210N	MYO5B_uc002lea.2_Missense_Mutation_p.K351N	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1210	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCTTCAGCTTTTTGTTCTCTG	0.592													36	154					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50929170	50929170	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:50929170C>T	uc002lfe.1	+	19	3429	c.2842C>T	c.(2842-2844)CCC>TCC	p.P948S	DCC_uc010xdr.1_Missense_Mutation_p.P776S|DCC_uc010dpf.1_Missense_Mutation_p.P583S	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	948	Extracellular (Potential).|Fibronectin type-III 6.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CACCTCTGCTCCCAAGGACTT	0.463													5	103					0	0	1	0	0
STARD6	147323	broad.mit.edu	37	18	51858160	51858160	+	Missense_Mutation	SNP	C	T	T	rs145044397	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:51858160C>T	uc010xdt.1	-	4	337	c.337G>A	c.(337-339)GAC>AAC	p.D113N		NM_139171	NP_631910	P59095	STAR6_HUMAN	START domain containing protein 6	113	START.				lipid transport		lipid binding			ovary(1)	1				Colorectal(16;0.021)|READ - Rectum adenocarcinoma(59;0.188)		TACACTAAGTCGATAAAGTCT	0.378													4	30					0	0	1	0	0
ONECUT2	9480	broad.mit.edu	37	18	55104004	55104004	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:55104004C>T	uc002lgo.2	+	1	1088	c.1056C>T	c.(1054-1056)CCC>CCT	p.P352P		NM_004852	NP_004843	O95948	ONEC2_HUMAN	one cut domain, family member 2	352	CUT.				organ morphogenesis	nucleus	sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3		Colorectal(73;0.234)		READ - Rectum adenocarcinoma(59;0.227)|Colorectal(16;0.245)		ACAGTATCCCCCAGGCGATCT	0.607													6	54					0	0	1	0	0
NARS	4677	broad.mit.edu	37	18	55273957	55273957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:55273957G>A	uc002lgs.2	-	10	1256	c.1028C>T	c.(1027-1029)CCT>CTT	p.P343L	NARS_uc002lgt.2_Missense_Mutation_p.P342L|NARS_uc010xea.1_Missense_Mutation_p.P94L	NM_004539	NP_004530	O43776	SYNC_HUMAN	asparaginyl-tRNA synthetase	343					asparaginyl-tRNA aminoacylation	cytosol|soluble fraction	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding				0		Colorectal(73;0.227)			L-Asparagine(DB00174)	AGTCAGGAAAGGACACTCAGC	0.468													8	91					0	0	1	0	0
ATP8B1	5205	broad.mit.edu	37	18	55373778	55373778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:55373778C>T	uc002lgw.2	-	2	223	c.223G>A	c.(223-225)GAA>AAA	p.E75K	uc002lgv.1_Intron	NM_005603	NP_005594	O43520	AT8B1_HUMAN	ATPase, class I, type 8B, member 1	75	Cytoplasmic (Potential).				ATP biosynthetic process|bile acid and bile salt transport|negative regulation of transcription, DNA-dependent	apical plasma membrane|integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(5)|ovary(2)|central_nervous_system(2)|lung(1)	10		Colorectal(73;0.229)				TGAGGTTGTTCGTGGTACTTG	0.308									Byler_disease				4	21					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56203590	56203590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:56203590C>T	uc002lhj.3	-	5	4043	c.3829G>A	c.(3829-3831)GAT>AAT	p.D1277N	ALPK2_uc002lhk.1_Missense_Mutation_p.D608N	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1277							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TTTAGACTATCAGGTACAGCC	0.507													6	57					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56205072	56205072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:56205072C>T	uc002lhj.3	-	5	2561	c.2347G>A	c.(2347-2349)GAT>AAT	p.D783N	ALPK2_uc002lhk.1_Missense_Mutation_p.D114N	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	783							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						AGGGCAGTATCTGTGGGTTCA	0.537													3	26					0	0	1	0	0
ZNF532	55205	broad.mit.edu	37	18	56651250	56651250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:56651250G>A	uc002lho.2	+	11	4005	c.3458G>A	c.(3457-3459)AGG>AAG	p.R1153K	ZNF532_uc002lhp.2_Missense_Mutation_p.R1151K|ZNF532_uc010xeg.1_Missense_Mutation_p.R1151K|ZNF532_uc002lhr.2_Missense_Mutation_p.R1151K|ZNF532_uc002lhs.2_Missense_Mutation_p.R1151K|ZNF532_uc010xeh.1_Missense_Mutation_p.R241K	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	1153					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						CTGGAGTTCAGGCCTCCCCGA	0.488													8	30					0	0	1	0	0
CCBE1	147372	broad.mit.edu	37	18	57103181	57103181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:57103181C>T	uc002lib.2	-	11	1250	c.1180G>A	c.(1180-1182)GAG>AAG	p.E394K	CCBE1_uc010dpq.2_Missense_Mutation_p.E123K|CCBE1_uc002lia.2_Missense_Mutation_p.E247K	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	394					lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				TCTCTTGTCTCAGTTCTTCTT	0.512													20	203					0	0	1	0	0
CCBE1	147372	broad.mit.edu	37	18	57115254	57115254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:57115254G>A	uc002lib.2	-	7	806	c.736C>T	c.(736-738)CCA>TCA	p.P246S	CCBE1_uc010dpq.2_Silent_p.F21F|CCBE1_uc002lia.2_Missense_Mutation_p.P99S	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	246	Collagen-like 1.				lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				GGAGGTCCTGGAAGGTAGGTG	0.577													6	80					0	0	1	0	0
CCBE1	147372	broad.mit.edu	37	18	57115291	57115291	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:57115291G>A	uc002lib.2	-	7	769	c.699C>T	c.(697-699)ATC>ATT	p.I233I	CCBE1_uc010dpq.2_Missense_Mutation_p.S9L|CCBE1_uc002lia.2_Silent_p.I86I	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	233					lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				TGTCACCAGTGATATACTTGC	0.597													6	56					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59157822	59157822	+	Silent	SNP	C	T	T	rs147796041	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:59157822C>T	uc010dps.1	+	1	48	c.36C>T	c.(34-36)AAC>AAT	p.N12N	CDH20_uc002lif.2_Silent_p.N6N	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	12					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				ATGCAAAGAACTGGCTTGGAC	0.468													6	72					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59157987	59157987	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:59157987C>T	uc010dps.1	+	1	213	c.201C>T	c.(199-201)TTC>TTT	p.F67F	CDH20_uc002lif.2_Silent_p.F61F	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	67	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				ACCAGTTTTTCGTTCTGGAAG	0.478													17	61					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59195323	59195323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:59195323G>A	uc010dps.1	+	6	1153	c.1141G>A	c.(1141-1143)GAA>AAA	p.E381K	CDH20_uc002lif.2_Missense_Mutation_p.E375K	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	381	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				CATCAGTGTGGAAGACGTGGA	0.498													7	46					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59221604	59221604	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:59221604C>T	uc010dps.1	+	11	2094	c.2082C>T	c.(2080-2082)GCC>GCT	p.A694A	CDH20_uc002lif.2_Silent_p.A688A	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	694	Cytoplasmic (Potential).			A -> G (in Ref. 1; AAG23739).	homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				CGGGGGCCGCCCCCAAGACGC	0.692													8	54					0	0	1	0	0
RNF152	220441	broad.mit.edu	37	18	59483346	59483346	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:59483346C>T	uc002lih.1	-	2	763	c.351G>A	c.(349-351)ATG>ATA	p.M117I		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	117					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				GGCGGCAGCCCATGTCTCCGG	0.652													8	44					0	0	1	0	0
KDSR	2531	broad.mit.edu	37	18	61018226	61018226	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:61018226G>A	uc010dpw.2	-	6	659	c.504C>T	c.(502-504)ATC>ATT	p.I168I	KDSR_uc010xem.1_Intron	NM_002035	NP_002026	Q06136	KDSR_HUMAN	3-ketodihydrosphingosine reductase precursor	168	Cytoplasmic (Potential).				3-keto-sphinganine metabolic process	endoplasmic reticulum membrane|extracellular space|integral to membrane	3-dehydrosphinganine reductase activity|binding			skin(1)	1						ACACAAACACGATCCTGCCCA	0.547													5	93					0	0	1	0	0
SERPINB5	5268	broad.mit.edu	37	18	61154210	61154210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:61154210C>T	uc002liz.3	+	3	342	c.200C>T	c.(199-201)CCC>CTC	p.P67L	SERPINB5_uc002liy.2_Missense_Mutation_p.P67L	NM_002639	NP_002630	P36952	SPB5_HUMAN	serine (or cysteine) proteinase inhibitor, clade	67					cellular component movement|regulation of proteolysis	cytoplasm|extracellular space	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1						AAAGATGTACCCTTTGGATTT	0.378													8	53					0	0	1	0	0
SERPINB5	5268	broad.mit.edu	37	18	61160312	61160312	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:61160312C>T	uc002liz.3	+	5	693	c.551C>T	c.(550-552)CCT>CTT	p.P184L	SERPINB5_uc002liy.2_Missense_Mutation_p.P184L	NM_002639	NP_002630	P36952	SPB5_HUMAN	serine (or cysteine) proteinase inhibitor, clade	184					cellular component movement|regulation of proteolysis	cytoplasm|extracellular space	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1						AAAGAATGTCCTTTCAGAGTC	0.408													5	52					0	0	1	0	0
SERPINB12	89777	broad.mit.edu	37	18	61233987	61233987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:61233987G>A	uc010xen.1	+	7	961	c.961G>A	c.(961-963)GAT>AAT	p.D321N	SERPINB12_uc010xeo.1_Missense_Mutation_p.D341N	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	321					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						GGGCATTACGGATATCTTTGA	0.433													8	134					0	0	1	0	0
SERPINB8	5271	broad.mit.edu	37	18	61645657	61645657	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:61645657C>T	uc002ljv.2	+	2	284	c.115C>T	c.(115-117)CTG>TTG	p.L39L	SERPINB8_uc002ljs.1_Silent_p.L39L|SERPINB8_uc002ljt.2_Silent_p.L39L|SERPINB8_uc002lju.2_Silent_p.L39L|SERPINB8_uc010xex.1_Intron	NM_198833	NP_942130	P50452	SPB8_HUMAN	serine (or cysteine) proteinase inhibitor, clade	39					regulation of proteolysis	cytosol	protein binding|serine-type endopeptidase inhibitor activity			skin(1)	1		Esophageal squamous(42;0.129)				CTCCTCTGCCCTGGCCATGGT	0.483													6	34					0	0	1	0	0
RTTN	25914	broad.mit.edu	37	18	67776851	67776851	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:67776851G>A	uc002lkp.2	-	28	3854	c.3786C>T	c.(3784-3786)TCC>TCT	p.S1262S	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_Silent_p.S350S	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	1262							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				TCCGCTCAAGGGACGGCAGGC	0.512													8	43					0	0	1	0	0
CNDP1	84735	broad.mit.edu	37	18	72234468	72234468	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:72234468G>A	uc002llq.2	+	6	767	c.556G>A	c.(556-558)GAT>AAT	p.D186N	CNDP1_uc002lls.2_5'UTR	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	186					proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		TGTTACTTAGGATCTTCCTGT	0.294													6	30					0	0	1	0	0
CNDP1	84735	broad.mit.edu	37	18	72244185	72244185	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:72244185A>T	uc002llq.2	+	8	1134	c.923A>T	c.(922-924)AAT>ATT	p.N308I	CNDP1_uc002lls.2_Missense_Mutation_p.N111I	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	308					proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		GAGGAAATAAATACATACAAA	0.438													6	45					0	0	1	0	0
ZNF407	55628	broad.mit.edu	37	18	72343954	72343954	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:72343954T>C	uc002llw.2	+	1	1036	c.979T>C	c.(979-981)TTT>CTT	p.F327L	ZNF407_uc010xfc.1_Missense_Mutation_p.F327L|ZNF407_uc010dqu.1_Missense_Mutation_p.F327L|ZNF407_uc002llu.2_Missense_Mutation_p.F326L	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	327					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GGGAAGCACGTTTAAAGATTT	0.353													5	90					0	0	1	0	0
ZNF407	55628	broad.mit.edu	37	18	72775158	72775158	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:72775158C>T	uc002llw.2	+	8	5538	c.5481C>T	c.(5479-5481)TTC>TTT	p.F1827F		NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1827					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GAGCCACCTTCGTGGAGACAG	0.607													19	123					0	0	1	0	0
TSHZ1	10194	broad.mit.edu	37	18	73000406	73000406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:73000406C>T	uc002lly.2	+	2	3472	c.2909C>T	c.(2908-2910)TCG>TTG	p.S970L		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	1015						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		CAGAATGTTTCGAAAGTCCTC	0.502													8	53					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76754664	76754664	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:76754664G>A	uc002lmt.2	+	2	2673	c.2673G>A	c.(2671-2673)GCG>GCA	p.A891A	SALL3_uc010dra.2_Silent_p.A498A	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	891					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GCCGCAGCGCGGGCAGCCCCG	0.726													9	28					0	0	1	0	0
NFATC1	4772	broad.mit.edu	37	18	77170468	77170468	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:77170468C>T	uc010xfg.1	+	2	646	c.193C>T	c.(193-195)CTG>TTG	p.L65L	NFATC1_uc002lnc.1_Silent_p.L65L|NFATC1_uc010xff.1_Silent_p.L65L|NFATC1_uc002lnd.2_Silent_p.L65L|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Silent_p.L65L|NFATC1_uc010xfi.1_Silent_p.L52L|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Silent_p.L52L|NFATC1_uc002lng.2_Silent_p.L52L|NFATC1_uc010xfk.1_Silent_p.L52L	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	65					intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		GCACTCCACCCTGCCGGCCCC	0.657													9	98					0	0	1	0	0
ADNP2	22850	broad.mit.edu	37	18	77893556	77893556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr18:77893556C>T	uc002lnw.2	+	4	715	c.260C>T	c.(259-261)TCA>TTA	p.S87L		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	87	C2H2-type 1.				cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		GTGCTTACTTCATTCAAGAAT	0.378													5	51					0	0	1	0	0
PPAP2C	8612	broad.mit.edu	37	19	291316	291316	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:291316G>A	uc002loi.2	-	1	120	c.21C>T	c.(19-21)TTC>TTT	p.F7F	PPAP2C_uc002loh.2_5'Flank|PPAP2C_uc002loj.2_Intron	NM_003712	NP_003703	O43688	LPP2_HUMAN	phosphatidic acid phosphatase type 2C isoform 1	7	Helical; (Potential).				sphingolipid metabolic process	integral to membrane|plasma membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|sphingosine-1-phosphate phosphatase activity			central_nervous_system(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGAGCAGCACGAAGACCCACC	0.746													17	96					0	0	1	0	0
MIER2	54531	broad.mit.edu	37	19	307152	307152	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:307152G>A	uc002lok.1	-	13	1592	c.1583C>T	c.(1582-1584)CCG>CTG	p.P528L		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	528					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCGGGGGCCGGGCACGTGGG	0.677													4	12					0	0	1	0	0
MIER2	54531	broad.mit.edu	37	19	327146	327146	+	Silent	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:327146A>T	uc002lok.1	-	5	489	c.480T>A	c.(478-480)CCT>CCA	p.P160P		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	160					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACTCCGGTTAGGGAAGAGGT	0.597													23	105					0	0	1	0	0
THEG	51298	broad.mit.edu	37	19	371267	371267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:371267G>A	uc002lol.2	-	6	730	c.691C>T	c.(691-693)CGC>TGC	p.R231C	THEG_uc002lom.2_Missense_Mutation_p.R207C	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	231	THEG 3.				cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCTTCAGGCGACTCGACGCT	0.652													21	169					0	0	1	0	0
THEG	51298	broad.mit.edu	37	19	375767	375767	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:375767C>A	uc002lol.2	-	1	243	c.204G>T	c.(202-204)GAG>GAT	p.E68D	THEG_uc002lom.2_Missense_Mutation_p.E68D	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	68					cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCCGGCCACCTCCTCGGGGG	0.602													22	97					6.44725e-10	6.54013e-10	1	1	0
PRTN3	5657	broad.mit.edu	37	19	843546	843546	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:843546G>A	uc002lqa.1	+	2	171	c.147G>A	c.(145-147)GGG>GGA	p.G49G		NM_002777	NP_002768	P24158	PRTN3_HUMAN	myeloblastin	49	Peptidase S1.				collagen catabolic process|positive regulation of cell proliferation|proteolysis		protein binding|serine-type endopeptidase activity			ovary(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGATGCGGGGGAACCCGGGCA	0.711													4	11					0	0	1	0	0
WDR18	57418	broad.mit.edu	37	19	990244	990244	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:990244C>T	uc002lqm.1	+	4	503	c.477C>T	c.(475-477)TCC>TCT	p.S159S	WDR18_uc002lqn.1_RNA|WDR18_uc010drx.1_Silent_p.S122S|WDR18_uc010dry.1_Silent_p.S159S	NM_024100	NP_077005	Q9BV38	WDR18_HUMAN	WD repeat domain 18	159										skin(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGACCCCTCCAGGATTCCGG	0.726													4	21					0	0	1	0	0
GRIN3B	116444	broad.mit.edu	37	19	1005305	1005305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:1005305G>A	uc002lqo.1	+	3	1805	c.1805G>A	c.(1804-1806)GGC>GAC	p.G602D		NM_138690	NP_619635	O60391	NMD3B_HUMAN	glutamate receptor, ionotropic,	602	Cytoplasmic (Potential).				ionotropic glutamate receptor signaling pathway|protein insertion into membrane|regulation of calcium ion transport	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|ionotropic glutamate receptor activity|neurotransmitter receptor activity				0		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000226)|all_lung(49;0.000353)|Breast(49;0.00066)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Glycine(DB00145)|L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	AGCCCCTACGGCCTCACGCCA	0.642													6	55					0	0	1	0	0
ABCA7	10347	broad.mit.edu	37	19	1041405	1041405	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:1041405C>T	uc002lqw.3	+	2	276	c.45C>T	c.(43-45)TTC>TTT	p.F15F	ABCA7_uc010dsb.1_5'Flank|ABCA7_uc010dsa.2_Silent_p.F15F	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	15					phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGAAGAATTTCATGTATCGCC	0.632													11	97					0	0	1	0	0
ABCA7	10347	broad.mit.edu	37	19	1054255	1054255	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:1054255G>T	uc002lqw.3	+	27	3872	c.3641G>T	c.(3640-3642)TGG>TTG	p.W1214L	ABCA7_uc010dsb.1_Missense_Mutation_p.W1076L|ABCA7_uc002lqy.2_5'Flank	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	1214					phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTACAGGGCTGGGCACTGACC	0.692													5	29					0.000602214	0.000607971	1	1	0
HMHA1	23526	broad.mit.edu	37	19	1068724	1068724	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:1068724G>A	uc002lqz.1	+	2	633	c.402G>A	c.(400-402)AAG>AAA	p.K134K	HMHA1_uc010xgd.1_Silent_p.K150K|HMHA1_uc010xge.1_Intron|HMHA1_uc002lra.1_5'UTR|HMHA1_uc002lrb.1_5'Flank	NM_012292	NP_036424	Q92619	HMHA1_HUMAN	minor histocompatibility antigen HA-1	134					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGAAACTTAAGGAGTGTGTGT	0.577													6	45					0	0	1	0	0
ADAMTSL5	339366	broad.mit.edu	37	19	1507328	1507329	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:1507328_1507329GG>AA	uc002ltd.2	-	9	1208_1209	c.764_765CC>TT	c.(763-765)GCC>GTT	p.A255V	ADAMTSL5_uc010dsl.2_Missense_Mutation_p.A24V|ADAMTSL5_uc010xgq.1_Missense_Mutation_p.A265V	NM_213604	NP_998769	Q6ZMM2	ATL5_HUMAN	ADAMTS-like 5 precursor	255						proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Acute lymphoblastic leukemia(61;5.61e-13)|all_hematologic(61;2.65e-08)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CATGCGTGCCGGCCGCCTCGTA	0.658													15	114					0	0	1	0	0
TCF3	6929	broad.mit.edu	37	19	1611752	1611752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:1611752G>A	uc002ltr.2	-	19	1986	c.1919C>T	c.(1918-1920)CCC>CTC	p.P640L	TCF3_uc002ltn.2_Missense_Mutation_p.P89L|TCF3_uc002lto.2_Missense_Mutation_p.P401L|TCF3_uc002ltt.3_Missense_Mutation_p.P637L|TCF3_uc002ltq.2_Missense_Mutation_p.P644L|TCF3_uc002lts.1_Missense_Mutation_p.P552L	NM_003200	NP_003191	P15923	TFE2_HUMAN	transcription factor 3 isoform E12	640					B cell lineage commitment|B cell lineage commitment|G1 phase of mitotic cell cycle|immunoglobulin V(D)J recombination|muscle cell differentiation|positive regulation of B cell proliferation|positive regulation of cell cycle|positive regulation of muscle cell differentiation|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus|protein complex|transcription factor complex	bHLH transcription factor binding|DNA binding|E-box binding|identical protein binding|mitogen-activated protein kinase kinase kinase binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|vitamin D response element binding			lung(2)|breast(2)|ovary(1)|large_intestine(1)|skin(1)	7		Acute lymphoblastic leukemia(61;5.94e-12)|all_hematologic(61;1.27e-07)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCTGGGTGGGGAGCTGAAAG	0.617			T	PBX1|HLF|TFPT	pre B-ALL								13	58					0	0	1	0	0
ATP8B3	148229	broad.mit.edu	37	19	1785236	1785236	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:1785236C>T	uc002ltw.2	-	27	3688	c.3454G>A	c.(3454-3456)GGT>AGT	p.G1152S	ATP8B3_uc002ltv.2_Missense_Mutation_p.G1115S|ATP8B3_uc002ltx.2_RNA	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	1152	Helical; (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGTAGAAACCAAGGCTGAGG	0.592													8	9					0	0	1	0	0
ATP8B3	148229	broad.mit.edu	37	19	1785617	1785617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:1785617C>T	uc002ltw.2	-	26	3478	c.3244G>A	c.(3244-3246)GCC>ACC	p.A1082T	ATP8B3_uc002ltv.2_Missense_Mutation_p.A1045T|ATP8B3_uc002ltx.2_RNA	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	1082	Helical; (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGGCGATGGCTTGGACGAAG	0.612													4	32					0	0	1	0	0
ATP8B3	148229	broad.mit.edu	37	19	1796238	1796238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:1796238G>A	uc002ltw.2	-	17	2014	c.1780C>T	c.(1780-1782)CCC>TCC	p.P594S	ATP8B3_uc002ltv.2_Missense_Mutation_p.P547S|ATP8B3_uc002ltx.2_RNA	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	594	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCTCGTCGGGGGAGGCCGCC	0.662											OREG0025127	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	27					0	0	1	0	0
AP3D1	8943	broad.mit.edu	37	19	2120980	2120980	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:2120980G>A	uc002luz.2	-	14	1585	c.1362C>T	c.(1360-1362)TTC>TTT	p.F454F	AP3D1_uc002luy.2_Silent_p.F363F|AP3D1_uc002lva.2_Silent_p.F454F	NM_003938	NP_003929	O14617	AP3D1_HUMAN	adaptor-related protein complex 3, delta 1	454	HEAT 9.				eye pigment biosynthetic process|intracellular protein transport|regulation of sequestering of zinc ion|vesicle-mediated transport	endosome membrane|Golgi membrane|membrane coat	binding|protein transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGACACGGCGAACTTGCGGA	0.662													14	54					0	0	1	0	0
DOT1L	84444	broad.mit.edu	37	19	2216325	2216325	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:2216325C>T	uc002lvb.3	+	20	2005	c.1969C>T	c.(1969-1971)CTG>TTG	p.L657L	DOT1L_uc002lvc.1_5'UTR|uc002lvd.1_5'Flank|DOT1L_uc002lve.1_5'UTR	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	657						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCAGGAGCTCCTGCAGCTCAA	0.682													13	89					0	0	1	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2403135	2403135	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:2403135G>A	uc010xgx.1	+	5	510	c.510G>A	c.(508-510)GTG>GTA	p.V170V	TMPRSS9_uc002lvv.1_Silent_p.V204V	NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	170	LDL-receptor class A.|Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGACCAAGGTGAACCCGGAGT	0.602													10	31					0	0	1	0	0
LMNB2	84823	broad.mit.edu	37	19	2434083	2434083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:2434083G>A	uc002lvy.2	-	8	1250	c.1163C>T	c.(1162-1164)CCA>CTA	p.P388L	LMNB2_uc002lwa.1_Missense_Mutation_p.P408L	NM_032737	NP_116126	Q03252	LMNB2_HUMAN	lamin B2	388	Tail.					nuclear inner membrane	structural molecule activity			large_intestine(1)|ovary(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGCGAGGATGGGCTGGGGGA	0.706													4	43					0	0	1	0	0
ZNF554	115196	broad.mit.edu	37	19	2833937	2833937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:2833937C>T	uc002lwm.2	+	5	902	c.704C>T	c.(703-705)TCA>TTA	p.S235L	ZNF554_uc002lwl.2_Missense_Mutation_p.S184L	NM_001102651	NP_001096121	Q86TJ5	ZN554_HUMAN	zinc finger protein 554	235					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTTGTTTTATCACAGGGAAGC	0.488													19	88					0	0	1	0	0
ZNF556	80032	broad.mit.edu	37	19	2873621	2873621	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:2873621G>A	uc002lwp.1	+	2	217	c.130_splice	c.e2+1	p.D44_splice	ZNF556_uc002lwq.2_Splice_Site_p.D44_splice	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCTCAGTAGGTGAGGATAGC	0.348													9	78					0	0	1	0	0
ZNF556	80032	broad.mit.edu	37	19	2878141	2878141	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:2878141G>A	uc002lwp.1	+	4	1272	c.1185G>A	c.(1183-1185)GAG>GAA	p.E395E	ZNF556_uc002lwq.2_Silent_p.E394E	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	395					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACACTGGGGAGAAACCTGTAA	0.433													7	85					0	0	1	0	0
ZNF556	80032	broad.mit.edu	37	19	2878184	2878184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:2878184C>T	uc002lwp.1	+	4	1315	c.1228C>T	c.(1228-1230)CTT>TTT	p.L410F	ZNF556_uc002lwq.2_Missense_Mutation_p.L409F	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	410					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTCAGGCGGGCTTTGCTCTTC	0.453													5	113					0	0	1	0	0
ZNF556	80032	broad.mit.edu	37	19	2878238	2878238	+	Missense_Mutation	SNP	G	A	A	rs35494032	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:2878238G>A	uc002lwp.1	+	4	1369	c.1282G>A	c.(1282-1284)GAA>AAA	p.E428K	ZNF556_uc002lwq.2_Missense_Mutation_p.E427K	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	428	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGTAAATGCGAAAAATGTGG	0.448													30	109					0	0	1	0	0
FZR1	51343	broad.mit.edu	37	19	3526983	3526983	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:3526983C>T	uc010dtk.2	+	5	427	c.393C>T	c.(391-393)TCC>TCT	p.S131S	FZR1_uc002lxt.2_Silent_p.S131S|FZR1_uc002lxv.2_Intron	NM_001136198	NP_001129670	Q9UM11	FZR_HUMAN	Fzr1 protein isoform 1	131					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|DNA repair|G2/M transition DNA damage checkpoint|mitosis|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding			lung(1)|kidney(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		CACAGTATTCCCTTAGCACCA	0.657													7	61					0	0	1	0	0
FZR1	51343	broad.mit.edu	37	19	3527037	3527037	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:3527037C>T	uc010dtk.2	+	5	481	c.447C>T	c.(445-447)TCC>TCT	p.S149S	FZR1_uc002lxt.2_Silent_p.S149S|FZR1_uc002lxv.2_Intron	NM_001136198	NP_001129670	Q9UM11	FZR_HUMAN	Fzr1 protein isoform 1	149					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|DNA repair|G2/M transition DNA damage checkpoint|mitosis|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding			lung(1)|kidney(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCCCTACTCCCTGTCTCCCG	0.642													19	59					0	0	1	0	0
FZR1	51343	broad.mit.edu	37	19	3527686	3527686	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:3527686C>T	uc010dtk.2	+	6	562	c.528C>T	c.(526-528)TTC>TTT	p.F176F	FZR1_uc002lxt.2_Silent_p.F176F|FZR1_uc002lxv.2_Intron	NM_001136198	NP_001129670	Q9UM11	FZR_HUMAN	Fzr1 protein isoform 1	176					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|DNA repair|G2/M transition DNA damage checkpoint|mitosis|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding			lung(1)|kidney(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		AGATCCCCTTCAAGGTGCTGG	0.642													8	21					0	0	1	0	0
TJP3	27134	broad.mit.edu	37	19	3735877	3735877	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:3735877G>A	uc010xhv.1	+	9	1170	c.1170G>A	c.(1168-1170)AGG>AGA	p.R390R	TJP3_uc010xhs.1_Silent_p.R357R|TJP3_uc010xht.1_Silent_p.R321R|TJP3_uc010xhu.1_Silent_p.R366R|TJP3_uc010xhw.1_Silent_p.R376R	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	371						tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		AGTTGCCCAGGGAAAGCAGCT	0.512													37	113					0	0	1	0	0
TJP3	27134	broad.mit.edu	37	19	3746849	3746849	+	Missense_Mutation	SNP	G	A	A	rs144396449	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:3746849G>A	uc010xhv.1	+	17	2396	c.2396G>A	c.(2395-2397)CGG>CAG	p.R799Q	TJP3_uc010xhs.1_Missense_Mutation_p.R766Q|TJP3_uc010xht.1_Missense_Mutation_p.R730Q|TJP3_uc010xhu.1_Missense_Mutation_p.R775Q|TJP3_uc010xhw.1_Missense_Mutation_p.R785Q	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	780						tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGCAGACGCGGCCCATCTGG	0.657													3	16					0	0	1	0	0
DAPK3	1613	broad.mit.edu	37	19	3964923	3964923	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:3964923G>A	uc002lzc.1	-	2	222	c.129C>T	c.(127-129)TTC>TTT	p.F43F	DAPK3_uc002lzd.1_Silent_p.F43F	NM_001348	NP_001339	O43293	DAPK3_HUMAN	death-associated protein kinase 3	43	Protein kinase.				apoptosis|chromatin modification|induction of apoptosis|intracellular protein kinase cascade	cytoplasm|PML body	ATP binding|leucine zipper domain binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|ovary(1)|large_intestine(1)	7		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTTCTTGATGAACTTGGCTG	0.542													13	94					0	0	1	0	0
EEF2	1938	broad.mit.edu	37	19	3981385	3981385	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:3981385G>A	uc002lze.2	-	7	1046	c.963C>T	c.(961-963)ATC>ATT	p.I321I		NM_001961	NP_001952	P13639	EF2_HUMAN	eukaryotic translation elongation factor 2	321						cytosol|ribonucleoprotein complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|GBM - Glioblastoma multiforme(1328;0.0223)|STAD - Stomach adenocarcinoma(1328;0.18)		TGTCCAGTTTGATGTCCAGTT	0.512													17	175					0	0	1	0	0
CREB3L3	84699	broad.mit.edu	37	19	4154994	4154994	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:4154994G>A	uc002lzl.2	+	2	242	c.126G>A	c.(124-126)CTG>CTA	p.L42L	CREB3L3_uc002lzm.2_Silent_p.L33L|CREB3L3_uc010xib.1_Silent_p.L33L|CREB3L3_uc010xic.1_Silent_p.L33L	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	42	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		ACGTGGAGCTGGGCGAGGGCT	0.637													8	124					0	0	1	0	0
SIRT6	51548	broad.mit.edu	37	19	4180894	4180894	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:4180894G>A	uc002lzo.2	-	2	139	c.79C>T	c.(79-81)CCG>TCG	p.P27S	ANKRD24_uc010dtt.1_5'Flank|SIRT6_uc002lzn.2_5'UTR|SIRT6_uc002lzp.2_Missense_Mutation_p.P27S|SIRT6_uc010xid.1_Intron|SIRT6_uc002lzq.2_Missense_Mutation_p.P27S|SIRT6_uc002lzr.2_Intron	NM_016539	NP_057623	Q8N6T7	SIRT6_HUMAN	sirtuin 6	27					chromatin silencing|protein ADP-ribosylation	nuclear telomeric heterochromatin|nucleoplasm	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity|NAD+ binding|NAD-dependent histone deacetylase activity (H3-K9 specific)|protein binding|zinc ion binding			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.023)|STAD - Stomach adenocarcinoma(1328;0.18)		AGCTCCTCCGGGGGGTCGAAG	0.637													4	37					0	0	1	0	0
SIRT6	51548	broad.mit.edu	37	19	4180901	4180901	+	Silent	SNP	G	A	A	rs34786277	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:4180901G>A	uc002lzo.2	-	2	132	c.72C>T	c.(70-72)TTC>TTT	p.F24F	ANKRD24_uc010dtt.1_5'Flank|SIRT6_uc002lzn.2_5'UTR|SIRT6_uc002lzp.2_Silent_p.F24F|SIRT6_uc010xid.1_Intron|SIRT6_uc002lzq.2_Silent_p.F24F|SIRT6_uc002lzr.2_Intron	NM_016539	NP_057623	Q8N6T7	SIRT6_HUMAN	sirtuin 6	24					chromatin silencing|protein ADP-ribosylation	nuclear telomeric heterochromatin|nucleoplasm	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity|NAD+ binding|NAD-dependent histone deacetylase activity (H3-K9 specific)|protein binding|zinc ion binding			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.023)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGGGGGGTCGAAGATCTGTG	0.632													7	32					0	0	1	0	0
CHAF1A	10036	broad.mit.edu	37	19	4409665	4409665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:4409665C>T	uc002mal.2	+	3	969	c.869C>T	c.(868-870)CCC>CTC	p.P290L		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	290	Binds to CBX1 chromo shadow domain.				cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGAGCTCTCCCTCTTCCACC	0.617								Chromatin_Structure					12	44					0	0	1	0	0
PLIN4	729359	broad.mit.edu	37	19	4511891	4511891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:4511891G>A	uc002mar.1	-	3	2039	c.2039C>T	c.(2038-2040)ACC>ATC	p.T680I	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	680	18.|27 X 33 AA approximate tandem repeat.					lipid particle|plasma membrane					0						CTTGGTGCCGGTCAGCACGGT	0.572													12	204					0	0	1	0	0
PLIN4	729359	broad.mit.edu	37	19	4513255	4513255	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:4513255G>A	uc002mar.1	-	3	675	c.675C>T	c.(673-675)TCC>TCT	p.S225S	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	225	27 X 33 AA approximate tandem repeat.|4.					lipid particle|plasma membrane					0						TGAGCCCAGTGGACACAGCAT	0.572													16	145					0	0	1	0	0
PLIN5	440503	broad.mit.edu	37	19	4523854	4523854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:4523854C>T	uc002mas.2	-	8	1131	c.1078G>A	c.(1078-1080)GAG>AAG	p.E360K		NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	360						lipid particle					0						TCCAGCAGCTCGTCCACGCAG	0.751													4	21					0	0	1	0	0
PLIN5	440503	broad.mit.edu	37	19	4525805	4525805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:4525805G>A	uc002mas.2	-	6	613	c.560C>T	c.(559-561)TCG>TTG	p.S187L		NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	187						lipid particle					0						ATCCTCCACCGAACCCACTTC	0.463													6	27					0	0	1	0	0
C19orf10	56005	broad.mit.edu	37	19	4658084	4658084	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:4658084G>A	uc002may.2	-	6	524	c.455C>T	c.(454-456)CCC>CTC	p.P152L		NM_019107	NP_061980	Q969H8	CS010_HUMAN	hypothetical protein LOC56005 precursor	152						ER-Golgi intermediate compartment|extracellular region					0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.015)		GAATGCCCCGGGCCTGTGAGC	0.577													5	19					0	0	1	0	0
DPP9	91039	broad.mit.edu	37	19	4704291	4704291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:4704291G>A	uc002mba.2	-	6	710	c.452C>T	c.(451-453)TCT>TTT	p.S151F	DPP9_uc002mbb.2_Missense_Mutation_p.S151F|DPP9_uc002mbc.2_Missense_Mutation_p.S151F	NM_139159	NP_631898	Q86TI2	DPP9_HUMAN	dipeptidylpeptidase 9	122					proteolysis	cytosol|membrane	aminopeptidase activity|serine-type peptidase activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00884)		CTCCTCCCGAGAGTAGACCCC	0.642													19	112					0	0	1	0	0
ARRDC5	645432	broad.mit.edu	37	19	4896785	4896785	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:4896785G>A	uc002mbm.2	-	2	399	c.399C>T	c.(397-399)TTC>TTT	p.F133F		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	133					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		AAGCTTGTACGAAATAGAAGA	0.458													7	85					0	0	1	0	0
KDM4B	23030	broad.mit.edu	37	19	5047612	5047612	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:5047612C>T	uc002mbq.3	+	6	784	c.558C>T	c.(556-558)TTC>TTT	p.F186F	KDM4B_uc010xil.1_Silent_p.F186F|KDM4B_uc010xim.1_Silent_p.F186F	NM_015015	NP_055830	O94953	KDM4B_HUMAN	jumonji domain containing 2B	186	JmjC.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			lung(1)	1						AGACCACCTTCGCCTGGCACA	0.627													15	60					0	0	1	0	0
PTPRS	5802	broad.mit.edu	37	19	5208026	5208026	+	Silent	SNP	G	A	A	rs138437349		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:5208026G>A	uc002mbv.2	-	37	5919	c.5685C>T	c.(5683-5685)ATC>ATT	p.I1895I	PTPRS_uc002mbu.1_Silent_p.I1464I|PTPRS_uc010xin.1_Silent_p.I1437I|PTPRS_uc002mbw.2_Silent_p.I1857I|PTPRS_uc002mbx.2_Silent_p.I1452I|PTPRS_uc002mby.2_Silent_p.I1448I	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1895	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		GCTCCAGCACGATGCTAAGCG	0.602													12	39					0	0	1	0	0
PTPRS	5802	broad.mit.edu	37	19	5215583	5215583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:5215583G>A	uc002mbv.2	-	27	4354	c.4120C>T	c.(4120-4122)CCC>TCC	p.P1374S	PTPRS_uc002mbu.1_Missense_Mutation_p.P943S|PTPRS_uc010xin.1_Intron|PTPRS_uc002mbw.2_Missense_Mutation_p.P1336S|PTPRS_uc002mbx.2_Missense_Mutation_p.P931S|PTPRS_uc002mby.2_Missense_Mutation_p.P927S	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1374	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		TCTGCGATGGGAATTGGCGGG	0.672													8	62					0	0	1	0	0
PTPRS	5802	broad.mit.edu	37	19	5238958	5238958	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:5238958G>A	uc002mbv.2	-	13	2055	c.1821C>T	c.(1819-1821)CCC>CCT	p.P607P	PTPRS_uc002mbu.1_Silent_p.P594P|PTPRS_uc010xin.1_Silent_p.P594P|PTPRS_uc002mbw.2_Silent_p.P594P|PTPRS_uc002mbx.2_Silent_p.P598P|PTPRS_uc002mby.2_Silent_p.P594P	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	607	Extracellular (Potential).|Fibronectin type-III 3.				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		GCCGCACCACGGGGGTGAAGG	0.716													9	62					0	0	1	0	0
ZNRF4	148066	broad.mit.edu	37	19	5456451	5456451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:5456451G>A	uc002mca.3	+	1	1026	c.949G>A	c.(949-951)GAG>AAG	p.E317K		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	317	RING-type; atypical.|Cytoplasmic (Potential).					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		GGATGAGTATGAGGAGGGCGA	0.627													4	52					0	0	1	0	0
SAFB2	9667	broad.mit.edu	37	19	5610062	5610062	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:5610062G>A	uc002mcd.2	-	9	1452	c.1240C>T	c.(1240-1242)CTG>TTG	p.L414L		NM_014649	NP_055464	Q14151	SAFB2_HUMAN	scaffold attachment factor B2	414	RRM.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;0.000228)		GTGGAGGACAGCCCGCTGACC	0.557													4	22					0	0	1	0	0
PRR22	163154	broad.mit.edu	37	19	5784069	5784069	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:5784069G>A	uc002mdb.1	-	1	542	c.183C>T	c.(181-183)CCC>CCT	p.P61P	PRR22_uc010xiv.1_Intron	NM_153359	NP_699190	Q8IZ63	PRR22_HUMAN	proline rich 22 isoform 2	61											0						GGAAACCTGTGGGCGGCAGGC	0.657													11	77					0	0	1	0	0
FUT3	2525	broad.mit.edu	37	19	5844472	5844472	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:5844472G>A	uc002mdk.2	-	2	476	c.379C>T	c.(379-381)CCG>TCG	p.P127S	FUT3_uc002mdm.2_Missense_Mutation_p.P127S|FUT3_uc002mdj.2_Missense_Mutation_p.P127S|FUT3_uc002mdl.2_Missense_Mutation_p.P127S	NM_001097641	NP_001091110	P21217	FUT3_HUMAN	fucosyltransferase 3	127	Lumenal (Potential).				protein glycosylation	Golgi cisterna membrane|integral to membrane|membrane fraction	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity				0						TGCCCCTGCGGCCTCGGGGAA	0.597													19	97					0	0	1	0	0
RFX2	5990	broad.mit.edu	37	19	5997222	5997222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:5997222G>A	uc002meb.2	-	16	2131	c.1862C>T	c.(1861-1863)TCC>TTC	p.S621F	RFX2_uc002mec.2_Missense_Mutation_p.S596F	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	621					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						GATCACCATGGAGCTGGGGAC	0.642													5	18					0	0	1	0	0
ACSBG2	81616	broad.mit.edu	37	19	6165883	6165883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:6165883G>A	uc002mef.1	+	7	822	c.595G>A	c.(595-597)GAT>AAT	p.D199N	ACSBG2_uc002mee.1_Missense_Mutation_p.D12N|ACSBG2_uc002meg.1_Missense_Mutation_p.D199N|ACSBG2_uc002meh.1_Missense_Mutation_p.D199N|ACSBG2_uc002mei.1_Missense_Mutation_p.D149N|ACSBG2_uc010xiz.1_Missense_Mutation_p.D199N	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	199					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						ACAGTGGGATGATTTCATGGA	0.517											OREG0025194	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	37					0	0	1	0	0
MLLT1	4298	broad.mit.edu	37	19	6230620	6230620	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:6230620G>A	uc002mek.2	-	4	545	c.381C>T	c.(379-381)CCC>CCT	p.P127P		NM_005934	NP_005925	Q03111	ENL_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	127					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|protein binding			skin(1)	1						ACTCCGTGGTGGGGTTGTTGA	0.667			T	MLL	AL								20	144					0	0	1	0	0
SLC25A41	284427	broad.mit.edu	37	19	6432104	6432104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:6432104G>A	uc010dus.2	-	2	405	c.319C>T	c.(319-321)CGC>TGC	p.R107C	SLC25A41_uc010dut.2_5'UTR	NM_173637	NP_775908	Q8N5S1	S2541_HUMAN	solute carrier family 25, member 41	107	Solcar 1.|Helical; Name=1; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						GTGCCCGTGCGAGACACCGCC	0.617													7	49					0	0	1	0	0
CRB3	92359	broad.mit.edu	37	19	6465617	6465617	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:6465617C>T	uc002mey.2	+	3	675	c.144C>T	c.(142-144)TCC>TCT	p.S48S	CRB3_uc002mez.2_Silent_p.S48S|CRB3_uc002mfa.2_Silent_p.S48S	NM_139161	NP_631900	Q9BUF7	CRUM3_HUMAN	crumbs 3 isoform a precursor	48	Extracellular (Potential).				protein localization in plasma membrane|tight junction assembly	apical plasma membrane|integral to membrane|tight junction	SH3 domain binding				0						GCTCCAGCTCCGATGGCAACC	0.498													43	215					0	0	1	0	0
DENND1C	79958	broad.mit.edu	37	19	6468065	6468065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:6468065G>A	uc002mfe.2	-	23	1948	c.1856C>T	c.(1855-1857)TCC>TTC	p.S619F	DENND1C_uc002mfb.2_Missense_Mutation_p.S169F|DENND1C_uc002mfc.2_Missense_Mutation_p.S169F|DENND1C_uc002mfd.2_Missense_Mutation_p.S169F|DENND1C_uc010xje.1_Missense_Mutation_p.S575F	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	619						clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						GGATGGCAGGGAAAGGGGCTG	0.537													5	38					0	0	1	0	0
DENND1C	79958	broad.mit.edu	37	19	6479879	6479879	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:6479879G>A	uc002mfe.2	-	3	209	c.117C>T	c.(115-117)TTC>TTT	p.F39F	DENND1C_uc002mfd.2_5'UTR|DENND1C_uc010xje.1_Intron	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	39	UDENN.					clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						CCTGGTCCCTGAAGTCTGGAG	0.642													4	14					0	0	1	0	0
TUBB4	10382	broad.mit.edu	37	19	6495472	6495472	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:6495472G>A	uc002mfg.1	-	4	1145	c.1038C>T	c.(1036-1038)CCC>CCT	p.P346P	TUBB4_uc002mff.1_Silent_p.P274P|MIR220B_hsa-mir-220b|MI0005529_5'Flank	NM_006087	NP_006078	P04350	TBB4_HUMAN	tubulin, beta 4	346					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(2)	2		Hepatocellular(1079;0.00213)|Renal(1328;0.0183)		Lung(535;3.23e-05)|STAD - Stomach adenocarcinoma(1328;8.24e-05)|GBM - Glioblastoma multiforme(1328;0.00839)|READ - Rectum adenocarcinoma(264;0.155)		TCACGTTGTTGGGGATCCACT	0.632													35	207					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6714447	6714448	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:6714447_6714448CC>AT	uc002mfm.2	-	5	576_577	c.514_515GG>AT	c.(514-516)GGC>ATC	p.G172I		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	172					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GACCGGGATGCCTTCCGGGTTC	0.564													9	33					0	0	1	0	0
SH2D3A	10045	broad.mit.edu	37	19	6754880	6754880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:6754880C>T	uc002mft.2	-	5	1137	c.943G>A	c.(943-945)GGG>AGG	p.G315R	SH2D3A_uc010xjg.1_Missense_Mutation_p.G193R	NM_005490	NP_005481	Q9BRG2	SH23A_HUMAN	SH2 domain containing 3A	315					JNK cascade|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			breast(2)	2						GCGGTGCTCCCAGGATGGTGC	0.647													17	97					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6897307	6897307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:6897307C>T	uc002mfw.2	+	4	424	c.386C>T	c.(385-387)TCC>TTC	p.S129F	EMR1_uc010dvc.2_Missense_Mutation_p.S129F|EMR1_uc010dvb.2_Intron|EMR1_uc010xji.1_Intron|EMR1_uc010xjj.1_Missense_Mutation_p.S129F	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	129	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					GGCAATTTCTCCTGTACTGGT	0.493													5	28					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6919729	6919729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:6919729C>T	uc002mfw.2	+	13	1629	c.1591C>T	c.(1591-1593)CCA>TCA	p.P531S	EMR1_uc010dvc.2_Missense_Mutation_p.P531S|EMR1_uc010dvb.2_Missense_Mutation_p.P479S|EMR1_uc010xji.1_Missense_Mutation_p.P390S|EMR1_uc010xjj.1_Missense_Mutation_p.P354S	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	531	Ser/Thr-rich.|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					CTTCTCAGATCCAATCATCTA	0.483													14	70					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6926469	6926469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:6926469G>A	uc002mfw.2	+	16	2117	c.2079G>A	c.(2077-2079)ATG>ATA	p.M693I	EMR1_uc010dvc.2_Missense_Mutation_p.M628I|EMR1_uc010dvb.2_Missense_Mutation_p.M641I|EMR1_uc010xji.1_Missense_Mutation_p.M552I|EMR1_uc010xjj.1_Missense_Mutation_p.M516I	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	693	Cytoplasmic (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					TGTTCTTGATGGTCAGAAACC	0.537													6	97					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6926546	6926546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:6926546G>A	uc002mfw.2	+	16	2194	c.2156G>A	c.(2155-2157)GGG>GAG	p.G719E	EMR1_uc010dvc.2_Missense_Mutation_p.G654E|EMR1_uc010dvb.2_Missense_Mutation_p.G667E|EMR1_uc010xji.1_Missense_Mutation_p.G578E|EMR1_uc010xjj.1_Missense_Mutation_p.G542E	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	719	Helical; Name=4; (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					TTTGGTTATGGGCTGCCGATG	0.512													19	112					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6928183	6928183	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:6928183C>T	uc002mfw.2	+	17	2288	c.2250C>T	c.(2248-2250)TTC>TTT	p.F750F	EMR1_uc010dvc.2_Silent_p.F685F|EMR1_uc010dvb.2_Silent_p.F698F|EMR1_uc010xji.1_Silent_p.F609F|EMR1_uc010xjj.1_Silent_p.F573F	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	750	Helical; Name=5; (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					AGACAGGGTTCATCTGGAGTT	0.498													18	116					0	0	1	0	0
ZNF557	79230	broad.mit.edu	37	19	7082959	7082959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:7082959C>T	uc002mgb.2	+	8	961	c.476C>T	c.(475-477)TCC>TTC	p.S159F	ZNF557_uc002mga.2_Missense_Mutation_p.S166F|ZNF557_uc002mgc.2_Missense_Mutation_p.S166F	NM_001044388	NP_001037853	Q8N988	ZN557_HUMAN	zinc finger protein 557 isoform b	159	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2				Lung(535;0.179)		ACAAAATCTTCCCTTACACGG	0.408													6	14					0	0	1	0	0
INSR	3643	broad.mit.edu	37	19	7117339	7117339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:7117339C>T	uc002mgd.1	-	22	3986	c.3877G>A	c.(3877-3879)GAC>AAC	p.D1293N	INSR_uc002mge.1_Missense_Mutation_p.D1281N	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	1293	Protein kinase.|Cytoplasmic (Potential).				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GGGTGCAGGTCGTCCTTGAGC	0.562													53	340					0	0	1	0	0
C19orf45	374877	broad.mit.edu	37	19	7566164	7566164	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:7566164C>T	uc002mgm.2	+	2	597	c.456C>T	c.(454-456)TTC>TTT	p.F152F		NM_198534	NP_940936	Q8NA69	CS045_HUMAN	hypothetical protein LOC374877	152											0						GCCTCATCTTCGACCGCGACT	0.751													6	24					0	0	1	0	0
C19orf45	374877	broad.mit.edu	37	19	7570920	7570920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:7570920G>A	uc002mgm.2	+	7	1217	c.1076G>A	c.(1075-1077)GGG>GAG	p.G359E	C19orf45_uc010xjo.1_Missense_Mutation_p.G31E	NM_198534	NP_940936	Q8NA69	CS045_HUMAN	hypothetical protein LOC374877	359											0						GTGACCCTAGGGGAGCCAAAG	0.582													10	56					0	0	1	0	0
MCOLN1	57192	broad.mit.edu	37	19	7594574	7594574	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:7594574C>T	uc002mgo.2	+	11	1460	c.1335C>T	c.(1333-1335)ATC>ATT	p.I445I	MCOLN1_uc002mgp.2_Silent_p.I410I	NM_020533	NP_065394	Q9GZU1	MCLN1_HUMAN	mucolipin 1	445	Helical; (Potential).				calcium ion transport|cellular iron ion homeostasis|transferrin transport	integral to plasma membrane|late endosome membrane|lysosomal membrane	cation channel activity|iron ion transmembrane transporter activity			breast(1)	1						GTGGCTGGATCGTGCTGGGGC	0.582													8	138					0	0	1	0	0
PNPLA6	10908	broad.mit.edu	37	19	7622070	7622070	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:7622070C>T	uc010xjq.1	+	29	3522	c.3327C>T	c.(3325-3327)TAC>TAT	p.Y1109Y	PNPLA6_uc002mgq.1_Silent_p.Y1061Y|PNPLA6_uc010xjp.1_Silent_p.Y1034Y|PNPLA6_uc002mgr.1_Silent_p.Y1061Y|PNPLA6_uc002mgs.2_Silent_p.Y1099Y|PNPLA6_uc002mgt.1_RNA	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	1100	Patatin.|Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						TGTGGCGGTACGTGCGCGCCA	0.667													8	58					0	0	1	0	0
KIAA1543	57662	broad.mit.edu	37	19	7675609	7675609	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:7675609C>T	uc002mgv.3	+	7	1025	c.924C>T	c.(922-924)GCC>GCT	p.A308A	KIAA1543_uc002mgu.3_Silent_p.A335A	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	308	CH.				epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						TGATGCTGGCCGAGTTGTTCA	0.662													9	139					0	0	1	0	0
KIAA1543	57662	broad.mit.edu	37	19	7677037	7677037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:7677037C>T	uc002mgv.3	+	11	1759	c.1658C>T	c.(1657-1659)TCG>TTG	p.S553L	KIAA1543_uc002mgu.3_Missense_Mutation_p.S580L|KIAA1543_uc002mgw.2_5'Flank	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	553					epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						GCGGTGGCTTCGTCCCCAGCA	0.647													4	13					0	0	1	0	0
CLEC4G	339390	broad.mit.edu	37	19	7794808	7794808	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:7794808C>T	uc002mhp.3	-	8	711	c.642G>A	c.(640-642)CGG>CGA	p.R214R		NM_198492	NP_940894	Q6UXB4	CLC4G_HUMAN	C-type lectin domain family 4, member G	214	Extracellular (Potential).|C-type lectin.					integral to membrane	protein binding|sugar binding				0						CACGCGTGTTCCGAGTGAGGA	0.672													11	45					0	0	1	0	0
CD209	30835	broad.mit.edu	37	19	7809887	7809887	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:7809887G>A	uc002mht.2	-	5	907	c.840C>T	c.(838-840)TCC>TCT	p.S280S	CD209_uc010xju.1_Silent_p.S119S|CD209_uc010dvp.2_Silent_p.S256S|CD209_uc002mhr.2_Silent_p.S256S|CD209_uc002mhs.2_Silent_p.S210S|CD209_uc002mhu.2_Silent_p.S188S|CD209_uc010dvq.2_Silent_p.S280S|CD209_uc002mhq.2_Silent_p.S280S|CD209_uc002mhv.2_Silent_p.S256S|CD209_uc002mhx.2_Silent_p.S236S|CD209_uc002mhw.2_Silent_p.S144S|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	280	Extracellular (Probable).|C-type lectin.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						AGGCGGTGATGGAGTCGTGCC	0.587													9	79					0	0	1	0	0
CD209	30835	broad.mit.edu	37	19	7810924	7810924	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:7810924C>T	uc002mht.2	-	4	295	c.228G>A	c.(226-228)GCG>GCA	p.A76A	CD209_uc010xju.1_Silent_p.A76A|CD209_uc010dvp.2_Silent_p.A52A|CD209_uc002mhr.2_Silent_p.A52A|CD209_uc002mhs.2_Silent_p.A52A|CD209_uc002mhu.2_Silent_p.A76A|CD209_uc010dvq.2_Silent_p.A76A|CD209_uc002mhq.2_Silent_p.A76A|CD209_uc002mhv.2_Silent_p.A52A|CD209_uc002mhx.2_Silent_p.A32A|CD209_uc002mhw.2_Silent_p.A32A|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	76	Extracellular (Probable).				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						TCTGGTAGATCGCGTCTTGCC	0.463													11	149					0	0	1	0	0
CLEC4M	10332	broad.mit.edu	37	19	7828326	7828326	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:7828326C>T	uc002mih.2	+	2	212	c.94C>T	c.(94-96)CAA>TAA	p.Q32*	CLEC4M_uc010xjv.1_Nonsense_Mutation_p.Q32*|CLEC4M_uc002mhy.2_Intron|CLEC4M_uc010xjw.1_Nonsense_Mutation_p.Q32*|CLEC4M_uc010dvt.2_Nonsense_Mutation_p.Q32*|CLEC4M_uc010dvs.2_Nonsense_Mutation_p.Q31*|CLEC4M_uc010xjx.1_Intron|CLEC4M_uc002mhz.2_Nonsense_Mutation_p.Q32*|CLEC4M_uc002mic.2_Intron|CLEC4M_uc002mia.2_Nonsense_Mutation_p.Q32*	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	32	Cytoplasmic (Probable).				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						AAGAGACTTTCAATTCCAGCA	0.468													8	70					0	0	1	0	0
MAP2K7	5609	broad.mit.edu	37	19	7976151	7976151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:7976151C>T	uc002mit.2	+	8	937	c.872C>T	c.(871-873)CCC>CTC	p.P291L	MAP2K7_uc002miv.2_Missense_Mutation_p.P291L|MAP2K7_uc010xka.1_RNA|MAP2K7_uc010xkb.1_Missense_Mutation_p.P291L|MAP2K7_uc010dvv.2_Missense_Mutation_p.P166L	NM_145185	NP_660186	O14733	MP2K7_HUMAN	mitogen-activated protein kinase kinase 7	291	Protein kinase.				activation of JUN kinase activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus	ATP binding|JUN kinase kinase activity|magnesium ion binding|protein binding|protein kinase binding|protein phosphatase binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			large_intestine(7)|central_nervous_system(2)|ovary(1)|lung(1)	11					Etoposide(DB00773)	CGCATTGACCCCCCAGACCCC	0.706													6	73					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8176655	8176655	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8176655C>T	uc002mjf.2	-	31	3983	c.3962_splice	c.e31-1	p.D1321_splice		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor							proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TCATCCAGGTCTGCAGGAGAT	0.637													10	58					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8181669	8181669	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8181669C>T	uc002mjf.2	-	28	3622	c.3601G>A	c.(3601-3603)GAA>AAA	p.E1201K		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1201	EGF-like 17.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GGGTTCTCTTCACACTCGTCC	0.612													10	58					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8188893	8188893	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8188893C>T	uc002mjf.2	-	22	2753	c.2732_splice	c.e22-1	p.D911_splice		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor							proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						AATCTCACATCTGCACGGGGG	0.617													3	15					0	0	1	0	0
KANK3	256949	broad.mit.edu	37	19	8399453	8399453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8399453C>T	uc010dwa.2	-	3	1324	c.1258G>A	c.(1258-1260)GAG>AAG	p.E420K	KANK3_uc002mjp.1_5'Flank	NM_198471	NP_940873	Q6NY19	KANK3_HUMAN	ankyrin repeat domain 47	420											0						GAGGGCGCCTCTGCCGGGGAC	0.751													6	16					0	0	1	0	0
PRAM1	84106	broad.mit.edu	37	19	8563973	8563973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8563973G>A	uc002mkd.2	-	2	739	c.719C>T	c.(718-720)TCC>TTC	p.S240F	PRAM1_uc002mkc.2_Missense_Mutation_p.S240F	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	288	Pro-rich.						lipid binding|protein binding				0						CTGCGGCACGGACTTCTTAGG	0.617													8	49					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8610586	8610586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8610586G>A	uc002mkg.2	-	13	1418	c.1304C>T	c.(1303-1305)CCA>CTA	p.P435L	MYO1F_uc002mkh.2_3'UTR	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	435	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						GTACTGGATTGGAGTCCAGCG	0.577													20	238					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8615533	8615533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8615533C>T	uc002mkg.2	-	9	931	c.817G>A	c.(817-819)GTC>ATC	p.V273I	MYO1F_uc002mkh.2_Missense_Mutation_p.V273I	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	273	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						AGCTGCAGGACCAGCTGCTGG	0.587													5	76					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8651442	8651442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8651442C>T	uc002mkj.1	-	20	2677	c.2403G>A	c.(2401-2403)ATG>ATA	p.M801I	ADAMTS10_uc002mki.1_Missense_Mutation_p.M288I|ADAMTS10_uc002mkk.1_Missense_Mutation_p.M433I	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	801	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						TCCCTGTTACCATGACGATGA	0.597											OREG0025221	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	97					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8651448	8651448	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8651448G>A	uc002mkj.1	-	20	2671	c.2397C>T	c.(2395-2397)ATC>ATT	p.I799I	ADAMTS10_uc002mki.1_Silent_p.I286I|ADAMTS10_uc002mkk.1_Silent_p.I431I	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	799	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						TTACCATGACGATGAGAGATG	0.597											OREG0025221	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	84					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8654160	8654160	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8654160G>A	uc002mkj.1	-	18	2398	c.2124C>T	c.(2122-2124)ATC>ATT	p.I708I	ADAMTS10_uc002mki.1_Silent_p.I195I|ADAMTS10_uc002mkk.1_Silent_p.I340I	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	708	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						AGACGCCCTCGATGGTCTCGC	0.667													6	75					0	0	1	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8669951	8669951	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8669951G>A	uc002mkj.1	-	4	655	c.381C>T	c.(379-381)CAC>CAT	p.H127H	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	127					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GGCCCTGCAGGTGACCAGCGT	0.622													5	21					0	0	1	0	0
ACTL9	284382	broad.mit.edu	37	19	8808425	8808425	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8808425G>A	uc002mkl.2	-	1	748	c.627C>T	c.(625-627)TTC>TTT	p.F209F		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	209						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						TGTAGCCCTGGAAGACGGGCA	0.682													5	30					0	0	1	0	0
OR2Z1	284383	broad.mit.edu	37	19	8842024	8842024	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8842024T>A	uc010xkg.1	+	1	634	c.634T>A	c.(634-636)TCC>ACC	p.S212T		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						GCTCCCTCTTTCCCTCATCGC	0.592													6	49					0	0	1	0	0
MBD3L1	85509	broad.mit.edu	37	19	8953831	8953831	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8953831G>A	uc002mko.2	+	1	563	c.477G>A	c.(475-477)GGG>GGA	p.G159G		NM_145208	NP_660209	Q8WWY6	MB3L1_HUMAN	methyl-CpG binding domain protein 3-like	159					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						AACAGGAAGGGAAAGTGAAGA	0.493													5	23					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	8979244	8979244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8979244C>T	uc002mkp.2	-	71	42331	c.42127G>A	c.(42127-42129)GAA>AAA	p.E14043K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.E860K|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGACCAGGTTCATTGTAACCT	0.363													5	34					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	8994157	8994157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8994157C>T	uc002mkp.2	-	65	41732	c.41528G>A	c.(41527-41529)AGG>AAG	p.R13843K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.R660K|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13846	Extracellular (Potential).|SEA 12.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAAGGTCAGCCTGCAGCCAGA	0.527													6	29					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	8999555	8999555	+	Silent	SNP	C	T	T	rs143160605	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:8999555C>T	uc002mkp.2	-	56	40824	c.40620G>A	c.(40618-40620)AAG>AAA	p.K13540K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.K357K|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13542	SEA 10.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGCCCCATCCTTCTTGGGCC	0.602													9	20					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9005594	9005594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9005594G>A	uc002mkp.2	-	46	40016	c.39812C>T	c.(39811-39813)CCC>CTC	p.P13271L	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.P88L|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13273	SEA 8.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGGGTGTAGGGTCCCAGCTC	0.547													9	62					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9009651	9009651	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9009651C>T	uc002mkp.2	-	39	39279	c.39075G>A	c.(39073-39075)GGG>GGA	p.G13025G	MUC16_uc010dwi.2_5'Flank|MUC16_uc010dwj.2_5'Flank|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCATGTCCTCCCCATACTGCA	0.552													8	43					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9020092	9020092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9020092C>T	uc002mkp.2	-	21	37607	c.37403G>A	c.(37402-37404)AGC>AAC	p.S12468N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12470	Extracellular (Potential).|SEA 3.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGTCCAGGGCTTTTGGGGTC	0.542													16	58					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9026256	9026256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9026256C>T	uc002mkp.2	-	14	36934	c.36730G>A	c.(36730-36732)GAG>AAG	p.E12244K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12246	SEA 2.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGTCCTCCTCGTACTGCAGG	0.532													9	85					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9045903	9045903	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9045903C>T	uc002mkp.2	-	5	35932	c.35728G>A	c.(35728-35730)GAT>AAT	p.D11910N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11912	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGGGCTTATCAGTTGTTATA	0.507													13	57					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9046592	9046592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9046592G>A	uc002mkp.2	-	5	35243	c.35039C>T	c.(35038-35040)CCC>CTC	p.P11680L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11682	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTCACTAGAGGGAACAGTCCG	0.517													5	50					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9047995	9047995	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9047995G>A	uc002mkp.2	-	5	33840	c.33636C>T	c.(33634-33636)GTC>GTT	p.V11212V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11214	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGAACTAGTGACCAGTGAAG	0.488													4	10					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9048589	9048589	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9048589C>T	uc002mkp.2	-	5	33246	c.33042G>A	c.(33040-33042)GAG>GAA	p.E11014E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11016	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAGGTGTGGTCTCTGGTTCAC	0.517													4	36					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9056230	9056230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9056230C>T	uc002mkp.2	-	3	31420	c.31216G>A	c.(31216-31218)GAG>AAG	p.E10406K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10408	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTCCCAGCTCAACGCTCTCT	0.483													8	60					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9056445	9056445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9056445G>A	uc002mkp.2	-	3	31205	c.31001C>T	c.(31000-31002)TCT>TTT	p.S10334F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10336	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAGGTTGAAGAGGAGAATGG	0.517													5	17					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9060710	9060710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9060710C>T	uc002mkp.2	-	3	26940	c.26736G>A	c.(26734-26736)ATG>ATA	p.M8912I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8914	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGTGATATTCATACTGGGAG	0.498													9	41					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9063773	9063773	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9063773G>A	uc002mkp.2	-	3	23877	c.23673C>T	c.(23671-23673)TTC>TTT	p.F7891F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7893	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGATGTAGAGAACCAGCTGA	0.498													4	37					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9064755	9064755	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9064755G>A	uc002mkp.2	-	3	22895	c.22691C>T	c.(22690-22692)TCT>TTT	p.S7564F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7566	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGACACTTTAGAAAGAACAGT	0.498													5	32					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9065029	9065029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9065029G>A	uc002mkp.2	-	3	22621	c.22417C>T	c.(22417-22419)CCT>TCT	p.P7473S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7475	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTGAGAAAGGATGAATTTTC	0.473													4	39					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9065824	9065824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9065824C>T	uc002mkp.2	-	3	21826	c.21622G>A	c.(21622-21624)GCC>ACC	p.A7208T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7210	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGATGTGGCTTTGGATGTC	0.478													4	67					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9066073	9066073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9066073G>A	uc002mkp.2	-	3	21577	c.21373C>T	c.(21373-21375)CCT>TCT	p.P7125S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7127	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAGTCACAGGAAGAGGAGAG	0.517													9	27					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9067646	9067647	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9067646_9067647GG>AA	uc002mkp.2	-	3	20003_20004	c.19799_19800CC>TT	c.(19798-19800)ACC>ATT	p.T6600I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6602	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTCAGAAGTGGTGGTCCCCAC	0.441													18	67					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9068506	9068506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9068506C>T	uc002mkp.2	-	3	19144	c.18940G>A	c.(18940-18942)GAA>AAA	p.E6314K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6316	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAATAGAATTCATTTGGTGAA	0.463													11	42					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9069981	9069981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9069981G>A	uc002mkp.2	-	3	17669	c.17465C>T	c.(17464-17466)TCC>TTC	p.S5822F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5824	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTTCTGCTGGAAGTGATAAC	0.478													5	33					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9070567	9070567	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9070567C>T	uc002mkp.2	-	3	17083	c.16879G>A	c.(16879-16881)GAA>AAA	p.E5627K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5629	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGCTGGTTTCTTCCACAGGG	0.532													3	13					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9071744	9071744	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9071744G>A	uc002mkp.2	-	3	15906	c.15702C>T	c.(15700-15702)TCC>TCT	p.S5234S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5236	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTCTGGGGTGGAAATTTTGC	0.478													10	42					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9075298	9075298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9075298C>T	uc002mkp.2	-	3	12352	c.12148G>A	c.(12148-12150)GAA>AAA	p.E4050K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4052	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding	p.E4050D(1)		lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGTAATTTCTGTTCTAGGC	0.507													9	46					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9075336	9075336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9075336G>A	uc002mkp.2	-	3	12314	c.12110C>T	c.(12109-12111)TCC>TTC	p.S4037F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4039	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAACCTGGGGAAGAGATAAT	0.483													7	43					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9076411	9076411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9076411G>A	uc002mkp.2	-	3	11239	c.11035C>T	c.(11035-11037)CGT>TGT	p.R3679C		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3680	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTCTGGACACGAGAAAAAGTT	0.433													5	26					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9077304	9077304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9077304G>A	uc002mkp.2	-	3	10346	c.10142C>T	c.(10141-10143)TCA>TTA	p.S3381L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3382	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATCTGTCAATGAGCTCACAGA	0.473													9	95					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9080501	9080501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9080501C>T	uc002mkp.2	-	2	9734	c.9530G>A	c.(9529-9531)GGA>GAA	p.G3177E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3178	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding	p.A3175fs*111(1)		lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGTGGAATTTCCTTGTGCTGC	0.493													5	46					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9082904	9082904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9082904C>T	uc002mkp.2	-	1	9115	c.8911G>A	c.(8911-8913)GCA>ACA	p.A2971T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2972	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding	p.A2971E(1)		lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCATGCCCTGCCATAGAAGGG	0.502													5	34					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9085999	9085999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9085999G>A	uc002mkp.2	-	1	6020	c.5816C>T	c.(5815-5817)TCA>TTA	p.S1939L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1939	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGAATGGATGAAAAAGGCAA	0.488													6	23					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9089417	9089417	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9089417C>T	uc002mkp.2	-	1	2602	c.2398G>A	c.(2398-2400)GAA>AAA	p.E800K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	800	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTGTCTCTTCCCCTGATGGA	0.512													7	107					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9089741	9089741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9089741C>T	uc002mkp.2	-	1	2278	c.2074G>A	c.(2074-2076)GAA>AAA	p.E692K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	692	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGTTCCTTCCCTGAAAGCT	0.507													12	37					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9089878	9089878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9089878C>T	uc002mkp.2	-	1	2141	c.1937G>A	c.(1936-1938)GGT>GAT	p.G646D		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	646	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACTGGGACACCGTTCGTGGC	0.567													13	71					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9091236	9091236	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9091236C>T	uc002mkp.2	-	1	783	c.579G>A	c.(577-579)ATG>ATA	p.M193I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	193	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAAATGTTTTCATTGGAGATG	0.458													12	51					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9091517	9091517	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9091517T>C	uc002mkp.2	-	1	502	c.298A>G	c.(298-300)AGA>GGA	p.R100G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	100	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGCTGGTTCTTTGCTCGGAG	0.537													6	84					0	0	1	0	0
OR7G2	390882	broad.mit.edu	37	19	9213024	9213024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9213024C>T	uc010xkk.1	-	1	959	c.959G>A	c.(958-960)GGA>GAA	p.G320E		NM_001005193	NP_001005193	Q8NG99	OR7G2_HUMAN	olfactory receptor, family 7, subfamily G,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CCTCAAGGTTCCTTTCATGTC	0.443													4	44					0	0	1	0	0
OR7G2	390882	broad.mit.edu	37	19	9213734	9213734	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9213734G>A	uc010xkk.1	-	1	249	c.249C>T	c.(247-249)TTC>TTT	p.F83F		NM_001005193	NP_001005193	Q8NG99	OR7G2_HUMAN	olfactory receptor, family 7, subfamily G,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GATTGGAGAGGAAGAAGTACA	0.502													12	85					0	0	1	0	0
OR7D2	162998	broad.mit.edu	37	19	9296644	9296644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9296644C>T	uc002mkz.1	+	1	375	c.187C>T	c.(187-189)CTC>TTC	p.L63F		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	63	Helical; Name=2; (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						GTACTTCTTCCTCTCCAACCT	0.542													15	58					0	0	1	0	0
OR7D4	125958	broad.mit.edu	37	19	9324757	9324757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9324757C>T	uc002mla.1	-	1	757	c.757G>A	c.(757-759)GGA>AGA	p.G253R		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AGTCCTGTTCCATAGAACAAG	0.522													4	26					0	0	1	0	0
OR7E24	26648	broad.mit.edu	37	19	9361987	9361987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9361987G>A	uc002mlb.1	+	1	268	c.268G>A	c.(268-270)GGT>AGT	p.G90S		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	90	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GGCTGACATCGGTTTCACCTC	0.532													9	26					0	0	1	0	0
OR7E24	26648	broad.mit.edu	37	19	9362256	9362256	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9362256G>T	uc002mlb.1	+	1	537	c.537G>T	c.(535-537)TTG>TTT	p.L179F		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGCACAATTTGATTATGTTAC	0.438													8	24					3.09899e-07	3.13861e-07	1	1	0
OR7E24	26648	broad.mit.edu	37	19	9362472	9362472	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9362472G>A	uc002mlb.1	+	1	753	c.753G>A	c.(751-753)GGG>GGA	p.G251G		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	251	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CATCAGATGGGAAGTATAAAG	0.443													3	8					0	0	1	0	0
ZNF177	7730	broad.mit.edu	37	19	9492070	9492070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9492070C>T	uc002mli.2	+	12	1246	c.583C>T	c.(583-585)CTT>TTT	p.L195F	ZNF177_uc002mlj.2_Missense_Mutation_p.L145F|ZNF177_uc002mlk.2_Missense_Mutation_p.L195F	NM_003451	NP_003442	Q13360	ZN177_HUMAN	zinc finger protein 177	195	C2H2-type 3.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TCCTTCATCCCTTCAGAAACA	0.458													11	29					0	0	1	0	0
ZNF266	10781	broad.mit.edu	37	19	9524000	9524000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9524000G>A	uc002mll.2	-	4	1867	c.1601C>T	c.(1600-1602)TCC>TTC	p.S534F	ZNF266_uc002mlm.2_Missense_Mutation_p.S534F|ZNF266_uc002mln.2_Missense_Mutation_p.S534F|ZNF266_uc002mlo.2_Missense_Mutation_p.S534F|ZNF266_uc010dwp.2_Missense_Mutation_p.S534F|ZNF266_uc010dwq.2_Missense_Mutation_p.S534F	NM_198058	NP_932175	Q14584	ZN266_HUMAN	zinc finger protein 266	534	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATTTCGAAAGGAACTGGAAGA	0.433													7	53					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9578896	9578896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9578896C>T	uc002mlp.1	-	10	937	c.727G>A	c.(727-729)GAA>AAA	p.E243K	ZNF560_uc010dwr.1_Missense_Mutation_p.E137K	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	243					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TGAATACATTCAGACGTGTTG	0.388													5	23					0	0	1	0	0
ZNF426	79088	broad.mit.edu	37	19	9639686	9639686	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:9639686G>A	uc002mlq.2	-	8	1299	c.1035C>T	c.(1033-1035)TTC>TTT	p.F345F	ZNF426_uc010dws.2_Silent_p.F307F	NM_024106	NP_077011	Q9BUY5	ZN426_HUMAN	zinc finger protein 426	345	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGTACTGAGTGAAGGCTTTCC	0.443													4	36					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10077060	10077060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:10077060G>A	uc002mmq.1	-	64	4798	c.4712C>T	c.(4711-4713)TCG>TTG	p.S1571L		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1571	Fibrillar collagen NC1.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			AACCCTGAACGAGTCCCGCGC	0.612													7	42					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10080268	10080268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:10080268C>T	uc002mmq.1	-	56	4167	c.4081G>A	c.(4081-4083)GGG>AGG	p.G1361R		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1361	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CCAGGGATCCCTCGAAGACCC	0.662													3	21					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10084879	10084879	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:10084879C>T	uc002mmq.1	-	47	3558	c.3472G>A	c.(3472-3474)GAG>AAG	p.E1158K		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1158	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TCCCCTTTCTCTCCCGGAGGG	0.607													9	41					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10089819	10089819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:10089819C>T	uc002mmq.1	-	39	2949	c.2863G>A	c.(2863-2865)GAG>AAG	p.E955K		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	955	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TTGGCCCCCTCTCTGCCTTCC	0.587													5	38					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10091780	10091780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:10091780C>T	uc002mmq.1	-	33	2575	c.2489G>A	c.(2488-2490)GGA>GAA	p.G830E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	830	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TCCCCGCTCTCCTTCCAGGCC	0.522													6	114					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10108068	10108068	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:10108068G>A	uc002mmq.1	-	11	1328	c.1242C>T	c.(1240-1242)TTC>TTT	p.F414F		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	414	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GGTCGCCAGGGAATCCTGGGG	0.592													4	42					0	0	1	0	0
ICAM4	3386	broad.mit.edu	37	19	10397703	10397703	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:10397703C>T	uc002mns.1	+	1	54	c.15C>T	c.(13-15)TTC>TTT	p.F5F	ICAM4_uc002mnr.1_Silent_p.F5F|ICAM4_uc002mnt.1_Silent_p.F5F|ICAM5_uc002mnu.3_5'Flank	NM_001544	NP_001535	Q14773	ICAM4_HUMAN	intercellular adhesion molecule 4 isoform 1	5					cell-cell adhesion|regulation of immune response	extracellular region|integral to membrane|plasma membrane	integrin binding			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(20;2.64e-09)|Epithelial(33;4.31e-06)|all cancers(31;9.75e-06)			GGTCTCTGTTCCCTCTGTCGC	0.672													4	20					0	0	1	0	0
FDX1L	112812	broad.mit.edu	37	19	10421176	10421176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:10421176G>A	uc002mny.1	-	5	557	c.538C>T	c.(538-540)CCC>TCC	p.P180S	ZGLP1_uc002mnw.3_5'Flank|FDX1L_uc002mnx.1_RNA	NM_001031734	NP_001026904	Q6P4F2	ADXL_HUMAN	ferredoxin 1-like precursor	180					electron transport chain|transport	mitochondrial matrix	2 iron, 2 sulfur cluster binding|electron carrier activity|metal ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(20;9.5e-10)|Epithelial(33;2.11e-06)|all cancers(31;5.06e-06)			TGGGGCTTGGGGACATGGCCA	0.612													5	45					0	0	1	0	0
TYK2	7297	broad.mit.edu	37	19	10475316	10475316	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:10475316G>A	uc002moc.3	-	9	1719	c.1341C>T	c.(1339-1341)ATC>ATT	p.I447I	TYK2_uc010dxe.2_Silent_p.I262I|TYK2_uc002mod.2_Silent_p.I447I	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	447					intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			TCCCATCCCGGATGCTCATCA	0.672													7	54					0	0	1	0	0
KEAP1	9817	broad.mit.edu	37	19	10600447	10600447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:10600447G>A	uc002moq.1	-	4	1564	c.1408C>T	c.(1408-1410)CGT>TGT	p.R470C	KEAP1_uc002mop.1_Missense_Mutation_p.R188C|KEAP1_uc002mor.1_Missense_Mutation_p.R470C	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	470	Kelch 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			TAAAGGAGACGATTGAGGACA	0.557													4	39					0	0	1	0	0
KRI1	65095	broad.mit.edu	37	19	10668259	10668259	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:10668259A>C	uc002moy.1	-	16	1613	c.1604T>G	c.(1603-1605)GTG>GGG	p.V535G	KRI1_uc002mow.1_Missense_Mutation_p.V154G|KRI1_uc002mox.1_Missense_Mutation_p.V531G	NM_023008	NP_075384	Q8N9T8	KRI1_HUMAN	KRI1 homolog	535										ovary(1)	1			Epithelial(33;9.2e-06)|all cancers(31;3.9e-05)			GTCACAGGGCACCACTGTGCG	0.617													19	67					0	0	1	0	0
SLC44A2	57153	broad.mit.edu	37	19	10742769	10742769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:10742769C>T	uc002mpf.2	+	10	899	c.760C>T	c.(760-762)CGC>TGC	p.R254C	SLC44A2_uc002mpe.3_Missense_Mutation_p.R252C|SLC44A2_uc002mpg.1_5'Flank	NM_020428	NP_065161	Q8IWA5	CTL2_HUMAN	solute carrier family 44, member 2 isoform 1	254	Cytoplasmic (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane|plasma membrane	choline transmembrane transporter activity|signal transducer activity			ovary(1)	1			Epithelial(33;8.7e-06)|all cancers(31;2.77e-05)		Choline(DB00122)	CATCCTGCTTCGCTTCCTGGC	0.547													45	204					0	0	1	0	0
ILF3	3609	broad.mit.edu	37	19	10791923	10791923	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:10791923C>T	uc002mpn.2	+	11	1415	c.1098C>T	c.(1096-1098)GCC>GCT	p.A366A	ILF3_uc002mpm.2_Silent_p.A366A|ILF3_uc002mpl.2_Silent_p.A366A|ILF3_uc002mpk.2_Silent_p.A366A|ILF3_uc010xli.1_Intron|ILF3_uc002mpo.2_Silent_p.A366A|ILF3_uc002mpp.2_Silent_p.A187A	NM_012218	NP_036350	Q12906	ILF3_HUMAN	interleukin enhancer binding factor 3 isoform a	366					M phase|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleolus|ribonucleoprotein complex	DNA binding|double-stranded RNA binding|protein binding|protein binding			ovary(3)	3			Epithelial(33;6.86e-06)|all cancers(31;1.65e-05)			CCACCTATGCCATTACGCCCA	0.512													25	124					0	0	1	0	0
LDLR	3949	broad.mit.edu	37	19	11216102	11216102	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:11216102G>A	uc002mqk.3	+	4	688	c.520G>A	c.(520-522)GAA>AAA	p.E174K	LDLR_uc010xlk.1_Missense_Mutation_p.E174K|LDLR_uc010xll.1_Missense_Mutation_p.E133K|LDLR_uc010xlm.1_Missense_Mutation_p.E27K|LDLR_uc010xln.1_Intron|LDLR_uc010xlo.1_Intron	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	174	LDL-receptor class A 4.|Extracellular (Potential).				cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	CCCCGACTGCGAAGATGGCTC	0.647													46	173					0	0	1	0	0
LDLR	3949	broad.mit.edu	37	19	11222211	11222211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:11222211C>T	uc002mqk.3	+	8	1250	c.1082C>T	c.(1081-1083)CCC>CTC	p.P361L	LDLR_uc010xlk.1_Missense_Mutation_p.P361L|LDLR_uc010xll.1_Missense_Mutation_p.P320L|LDLR_uc010xlm.1_Missense_Mutation_p.P214L|LDLR_uc010xln.1_Missense_Mutation_p.P234L|LDLR_uc010xlo.1_Missense_Mutation_p.P193L	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	361	EGF-like 2; calcium-binding (Potential).|Extracellular (Potential).				cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	TGTCAGGATCCCGACACCTGC	0.597													60	246					0	0	1	0	0
KANK2	25959	broad.mit.edu	37	19	11303708	11303708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:11303708G>A	uc010dxv.2	-	6	1606	c.1048C>T	c.(1048-1050)CCC>TCC	p.P350S	KANK2_uc002mqm.2_Missense_Mutation_p.P350S|KANK2_uc002mqo.3_Missense_Mutation_p.P350S|KANK2_uc002mqp.1_Missense_Mutation_p.P159S|KANK2_uc002mqq.2_Missense_Mutation_p.P350S	NM_015493	NP_056308	Q63ZY3	KANK2_HUMAN	ankyrin repeat domain 25 isoform 1	350											0						CGCTGTGCGGGGGCGCCAGCG	0.716													4	20					0	0	1	0	0
DOCK6	57572	broad.mit.edu	37	19	11333707	11333708	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:11333707_11333708CC>TT	uc002mqs.3	-	25	3071_3072	c.3030_3031GG>AA	c.(3028-3033)CGGGGC>CGAAGC	p.G1011S	DOCK6_uc010xlq.1_Missense_Mutation_p.G350S	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	1011					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						AAGACAAAGCCCCGGTCCACCA	0.624													5	59					0	0	1	0	0
CCDC151	115948	broad.mit.edu	37	19	11541767	11541767	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:11541767G>A	uc002mrs.2	-	2	461	c.318C>T	c.(316-318)CTC>CTT	p.L106L	CCDC151_uc002mrr.2_Silent_p.L41L|CCDC151_uc010dxz.2_Silent_p.L106L	NM_145045	NP_659482	A5D8V7	CC151_HUMAN	coiled-coil domain containing 151	106	Potential.									ovary(1)	1						TCTCCTTGCGGAGCTGACTGA	0.572													11	171					0	0	1	0	0
ZNF833	401898	broad.mit.edu	37	19	11796202	11796202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:11796202G>A	uc010dyg.2	+	3	823	c.161G>A	c.(160-162)CGA>CAA	p.R54Q	ZNF833_uc002msl.3_RNA	NM_001013691	NP_001013713			zinc finger protein 833												0						AGTTCCATTCGAAAACATGCA	0.353													8	9					0	0	1	0	0
ZNF443	10224	broad.mit.edu	37	19	12542270	12542270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:12542270G>A	uc002mtu.2	-	4	914	c.716C>T	c.(715-717)TCC>TTC	p.S239F		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	239	C2H2-type 4.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						TCTTAGATAGGAACTGTAAAA	0.358													11	84					0	0	1	0	0
ZNF709	163051	broad.mit.edu	37	19	12575771	12575771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:12575771G>A	uc002mtv.3	-	4	1126	c.965C>T	c.(964-966)TCC>TTC	p.S322F	ZNF709_uc002mtw.3_Missense_Mutation_p.S290F|ZNF709_uc002mtx.3_Missense_Mutation_p.S322F	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	322	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTTTCTAAAGGAACTAGGAAA	0.373													4	31					0	0	1	0	0
ZNF490	57474	broad.mit.edu	37	19	12692059	12692059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:12692059G>A	uc002mtz.2	-	5	959	c.830C>T	c.(829-831)CCC>CTC	p.P277L		NM_020714	NP_065765	Q9ULM2	ZN490_HUMAN	zinc finger protein 490	277					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACATTTGTAGGGTTTCTCTCC	0.418													10	54					0	0	1	0	0
ZNF791	163049	broad.mit.edu	37	19	12739938	12739939	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:12739938_12739939CC>TT	uc002mua.2	+	4	1757_1758	c.1595_1596CC>TT	c.(1594-1596)GCC>GTT	p.A532V	ZNF791_uc010xml.1_Missense_Mutation_p.A500V|ZNF791_uc010dyu.1_Missense_Mutation_p.A423V|ZNF791_uc010xmm.1_Missense_Mutation_p.A423V	NM_153358	NP_699189	Q3KP31	ZN791_HUMAN	zinc finger protein 791	532	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TGTGGGAAGGCCTTTAGTCTTC	0.396													10	85					0	0	1	0	0
HOOK2	29911	broad.mit.edu	37	19	12882216	12882216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:12882216G>A	uc002muy.2	-	8	766	c.595C>T	c.(595-597)CGG>TGG	p.R199W	HOOK2_uc002muz.2_Missense_Mutation_p.R199W	NM_013312	NP_037444	Q96ED9	HOOK2_HUMAN	hook homolog 2 isoform 1	199	Sufficient for interaction with microtubules.|Potential.				early endosome to late endosome transport|endocytosis|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|protein transport	centrosome|FHF complex|microtubule	identical protein binding|microtubule binding			ovary(1)|breast(1)|skin(1)	3						CCTACCTGCCGCTCCAGATCC	0.597													4	21					0	0	1	0	0
MAST1	22983	broad.mit.edu	37	19	12954351	12954351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:12954351G>A	uc002mvm.2	+	4	385	c.257G>A	c.(256-258)GGA>GAA	p.G86E	MAST1_uc002mvk.2_Missense_Mutation_p.G82E|MAST1_uc002mvl.2_Intron	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	86					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						AGGGCGGACGGACGCCGGTGG	0.672													5	63					0	0	1	0	0
MAST1	22983	broad.mit.edu	37	19	12958122	12958122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:12958122G>A	uc002mvm.2	+	5	474	c.346G>A	c.(346-348)GAG>AAG	p.E116K	MAST1_uc002mvk.2_Missense_Mutation_p.E112K|MAST1_uc002mvl.2_Silent_p.R89R	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	116					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						CTCCTCCCAGGAGCGCCTTCA	0.662											OREG0025277	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	62					0	0	1	0	0
MAST1	22983	broad.mit.edu	37	19	12980016	12980016	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:12980016C>T	uc002mvm.2	+	22	3038	c.2910C>T	c.(2908-2910)ATC>ATT	p.I970I		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	970	PDZ.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						CCATCACCATCCAGCGCTCGG	0.582													7	56					0	0	1	0	0
FARSA	2193	broad.mit.edu	37	19	13039215	13039215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:13039215G>A	uc002mvs.2	-	7	830	c.782C>T	c.(781-783)GCC>GTC	p.A261V	FARSA_uc002mvt.2_RNA|FARSA_uc010xmv.1_Missense_Mutation_p.A230V|FARSA_uc010dyy.1_Missense_Mutation_p.A182V	NM_004461	NP_004452	Q9Y285	SYFA_HUMAN	phenylalanyl-tRNA synthetase, alpha subunit	261					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|phenylalanine-tRNA ligase activity|protein binding|tRNA binding			ovary(1)	1					L-Phenylalanine(DB00120)	CTGGAAGAGGGCGTCAAAGTT	0.597													21	88					0	0	1	0	0
DAND5	199699	broad.mit.edu	37	19	13084260	13084260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:13084260C>T	uc002mwc.1	+	2	425	c.382C>T	c.(382-384)CAT>TAT	p.H128Y	DAND5_uc010dyz.1_3'UTR	NM_152654	NP_689867	Q8N907	DAND5_HUMAN	dante precursor	128	CTCK.					extracellular region				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(19;1.87e-18)			GTGCTTTGGTCATTGCTCCTC	0.627													12	95					0	0	1	0	0
NFIX	4784	broad.mit.edu	37	19	13136080	13136080	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:13136080C>T	uc010xmx.1	+	2	350	c.297C>T	c.(295-297)TTC>TTT	p.F99F	NFIX_uc002mwd.2_Silent_p.F91F|NFIX_uc002mwe.2_Silent_p.F83F|NFIX_uc002mwf.2_Silent_p.F94F|NFIX_uc002mwg.1_Silent_p.F90F			Q14938	NFIX_HUMAN	RecName: Full=Nuclear factor 1;	91	CTF/NF-I.			F -> Y (in Ref. 1; AAA53422).	DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(19;8.2e-22)			GCGAGGACTTCGTGCTGACCA	0.652													7	39					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13397454	13397454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:13397454G>A	uc010dze.2	-	20	3655	c.3419C>T	c.(3418-3420)ACC>ATC	p.T1140I	CACNA1A_uc010dzc.2_Missense_Mutation_p.T665I|CACNA1A_uc002mwy.3_Missense_Mutation_p.T1139I|CACNA1A_uc010xne.1_Missense_Mutation_p.T668I	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1140	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	ATTCTCGGGGGTCTTGGGGGG	0.647													5	23					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13418631	13418631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:13418631C>T	uc010dze.2	-	15	2190	c.1954G>A	c.(1954-1956)GAT>AAT	p.D652N	CACNA1A_uc010dzc.2_Missense_Mutation_p.D177N|CACNA1A_uc002mwy.3_Missense_Mutation_p.D651N|CACNA1A_uc010xne.1_Missense_Mutation_p.D177N	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	652	Extracellular (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GGAAAAGTATCGAAGTTGGTG	0.557													16	94					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13476228	13476228	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:13476228G>A	uc010dze.2	-	5	923	c.687C>T	c.(685-687)ATC>ATT	p.I229I	CACNA1A_uc002mwy.3_Silent_p.I229I	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	229	I.|Helical; Name=S5 of repeat I; (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GGAGGAGGCCGATCTGCAGCA	0.458													8	46					0	0	1	0	0
C19orf57	79173	broad.mit.edu	37	19	14000019	14000019	+	Silent	SNP	G	A	A	rs141570550	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:14000019G>A	uc002mxl.1	-	6	1709	c.1650C>T	c.(1648-1650)TTC>TTT	p.F550F	C19orf57_uc002mxk.1_Silent_p.F432F|C19orf57_uc002mxm.1_Intron	NM_024323	NP_077299	Q0VDD7	CS057_HUMAN	hypothetical protein LOC79173	550					multicellular organismal development		protein binding			ovary(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			GTGGGGCTTCGAAGTCAGAGG	0.607													7	31					0	0	1	0	0
IL27RA	9466	broad.mit.edu	37	19	14157118	14157118	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:14157118G>A	uc002mxx.2	+	7	1344	c.921G>A	c.(919-921)GAG>GAA	p.E307E		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	307	Extracellular (Potential).				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						CAAGCTGGGAGCCTCTCACCA	0.602													14	205					0	0	1	0	0
ASF1B	55723	broad.mit.edu	37	19	14231337	14231337	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:14231337G>A	uc002mye.2	-	4	715	c.543C>T	c.(541-543)ATC>ATT	p.I181I	PRKACA_uc002myc.2_5'Flank	NM_018154	NP_060624	Q9NVP2	ASF1B_HUMAN	anti-silencing function 1B	181					cell differentiation|chromatin modification|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus					0						CCAAGCCCTTGATAGGAGTGC	0.612													4	60					0	0	1	0	0
PKN1	5585	broad.mit.edu	37	19	14562679	14562679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:14562679C>T	uc002myp.2	+	7	1177	c.1009C>T	c.(1009-1011)CCA>TCA	p.P337S	PKN1_uc002myq.2_Missense_Mutation_p.P343S	NM_002741	NP_002732	Q16512	PKN1_HUMAN	protein kinase N1 isoform 2	337	C2.				activation of JUN kinase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	endosome|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|GTP-Rho binding|histone binding|histone deacetylase binding|histone kinase activity (H3-T11 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|Rac GTPase binding			ovary(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8						CAGAGACCTCCCAGAGACCAT	0.692													6	26					0	0	1	0	0
PKN1	5585	broad.mit.edu	37	19	14562690	14562690	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:14562690C>T	uc002myp.2	+	7	1188	c.1020C>T	c.(1018-1020)ATC>ATT	p.I340I	PKN1_uc002myq.2_Silent_p.I346I	NM_002741	NP_002732	Q16512	PKN1_HUMAN	protein kinase N1 isoform 2	340	C2.				activation of JUN kinase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	endosome|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|GTP-Rho binding|histone binding|histone deacetylase binding|histone kinase activity (H3-T11 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|Rac GTPase binding			ovary(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8						CAGAGACCATCCCGTGGAACC	0.687													5	28					0	0	1	0	0
GIPC1	10755	broad.mit.edu	37	19	14589289	14589290	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:14589289_14589290GG>AT	uc002myt.2	-	9	1210_1211	c.940_941CC>AT	c.(940-942)CCT>ATT	p.P314I	GIPC1_uc002myu.2_Missense_Mutation_p.P314I|GIPC1_uc002myv.2_Missense_Mutation_p.P217I|GIPC1_uc002myw.2_Missense_Mutation_p.P217I|GIPC1_uc002myx.2_Missense_Mutation_p.P314I|GIPC1_uc002myy.2_Missense_Mutation_p.P217I	NM_005716	NP_005707	O14908	GIPC1_HUMAN	regulator of G-protein signalling 19 interacting	314					endothelial cell migration|G-protein coupled receptor protein signaling pathway|glutamate secretion|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|protein targeting|regulation of protein stability|regulation of synaptic plasticity|synaptic transmission	cell cortex|dendritic shaft|dendritic spine|membrane fraction|soluble fraction|synaptic vesicle|vesicle membrane	actin binding|myosin binding|protein homodimerization activity|receptor binding				0						GAACTCGTCAGGGAAGGCAAAG	0.644													4	35					0	0	1	0	0
CLEC17A	388512	broad.mit.edu	37	19	14710878	14710878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:14710878C>T	uc010dzn.1	+	12	855	c.778C>T	c.(778-780)CCC>TCC	p.P260S	CLEC17A_uc002mzh.1_Missense_Mutation_p.P243S|CLEC17A_uc010xnt.1_RNA|CLEC17A_uc010xnu.1_Intron|CLEC17A_uc010dzo.1_Missense_Mutation_p.P260S			Q6ZS10	CL17A_HUMAN	SubName: Full=CLEC17A protein;	260	Extracellular (Potential).					cell surface|integral to membrane	fucose binding|mannose binding|metal ion binding|receptor activity				0						AGGCTGGCTGCCCTTTGAGGG	0.512													9	36					0	0	1	0	0
CCDC105	126402	broad.mit.edu	37	19	15131353	15131353	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15131353G>A	uc002nae.2	+	3	855	c.756G>A	c.(754-756)CTG>CTA	p.L252L		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	252					microtubule cytoskeleton organization	microtubule				ovary(1)	1						ACCAGCCTCTGGACAAGGTTC	0.632													5	46					0	0	1	0	0
OR1I1	126370	broad.mit.edu	37	19	15197948	15197948	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15197948G>A	uc010xoe.1	+	1	72	c.72G>A	c.(70-72)CAG>CAA	p.Q24Q		NM_001004713	NP_001004713	O60431	OR1I1_HUMAN	olfactory receptor, family 1, subfamily I,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3						CAGAGCATCAGACCCTCCTCT	0.478													12	47					0	0	1	0	0
NOTCH3	4854	broad.mit.edu	37	19	15281175	15281175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15281175C>T	uc002nan.2	-	27	5157	c.5081G>A	c.(5080-5082)CGG>CAG	p.R1694Q		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1694	Cytoplasmic (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			CACGGGTTCCCGCCGGCCCTT	0.667													5	44					0	0	1	0	0
NOTCH3	4854	broad.mit.edu	37	19	15300083	15300083	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15300083C>T	uc002nan.2	-	7	1268	c.1192_splice	c.e7+1	p.G398_splice	NOTCH3_uc002nao.1_Splice_Site_p.G398_splice	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor						Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			GCTCCCCTCACCGATAGAGCA	0.642													11	83					0	0	1	0	0
NOTCH3	4854	broad.mit.edu	37	19	15302627	15302627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15302627C>T	uc002nan.2	-	5	807	c.731G>A	c.(730-732)CGA>CAA	p.R244Q	NOTCH3_uc002nao.1_Missense_Mutation_p.R244Q	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	244	Extracellular (Potential).|EGF-like 6; calcium-binding (Potential).		Missing (in CADASIL).		Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			ATTGAGACATCGGTGTCCTGG	0.617													6	66					0	0	1	0	0
BRD4	23476	broad.mit.edu	37	19	15355236	15355236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15355236G>A	uc002nar.2	-	13	2609	c.2387C>T	c.(2386-2388)TCG>TTG	p.S796L		NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	796					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			GGGTGGGGGCGAGGACTTCAT	0.473			T	NUT|C15orf55	lethal midline carcinoma of young people								11	27					0	0	1	0	0
BRD4	23476	broad.mit.edu	37	19	15367917	15367917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15367917G>A	uc002nar.2	-	8	1631	c.1409C>T	c.(1408-1410)TCC>TTC	p.S470F	BRD4_uc002nas.2_Missense_Mutation_p.S470F|BRD4_uc002nat.3_Missense_Mutation_p.S470F|BRD4_uc002nau.3_Missense_Mutation_p.S470F	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	470					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			CACTGCCGGGGAGGACACGGC	0.617			T	NUT|C15orf55	lethal midline carcinoma of young people								6	43					0	0	1	0	0
RASAL3	64926	broad.mit.edu	37	19	15569183	15569183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15569183C>T	uc002nbe.2	-	8	930	c.844G>A	c.(844-846)GAC>AAC	p.D282N	RASAL3_uc010eaa.1_5'Flank	NM_022904	NP_075055	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	282	PH.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity				0						ATCCAGCGGTCTCTCTCAGCG	0.632													4	15					0	0	1	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15586356	15586356	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15586356G>A	uc002nbf.3	-	2	1258	c.1125C>T	c.(1123-1125)GCC>GCT	p.A375A	PGLYRP2_uc002nbg.3_Silent_p.A375A	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	375					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						CACCCAGGAAGGCCTCAGTGA	0.517													29	153					0	0	1	0	0
CYP4F22	126410	broad.mit.edu	37	19	15636216	15636217	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15636216_15636217GG>AA	uc002nbh.3	+	3	236_237	c.69_70GG>AA	c.(67-72)GCGGTG>GCAATG	p.V24M		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	24						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						GCATATACGCGGTGTCCACCCT	0.644													8	41					0	0	1	0	0
CYP4F12	66002	broad.mit.edu	37	19	15794549	15794549	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15794549C>T	uc002nbl.2	+	7	955	c.894C>T	c.(892-894)TTC>TTT	p.F298F		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					CTTTGGATTTCATTGATGTGC	0.438													9	151					0	0	1	0	0
OR10H2	26538	broad.mit.edu	37	19	15839649	15839649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15839649C>T	uc002nbm.2	+	1	816	c.796C>T	c.(796-798)CCC>TCC	p.P266S		NM_013939	NP_039227	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					GCCCAAAGGTCCCCACTCTCA	0.547													18	63					0	0	1	0	0
OR10H5	284433	broad.mit.edu	37	19	15905541	15905541	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15905541A>G	uc010xos.1	+	1	683	c.683A>G	c.(682-684)AAG>AGG	p.K228R		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GCCATCTTGAAGATCCCTTCT	0.572													3	47					0	0	1	0	0
OR10H1	26539	broad.mit.edu	37	19	15918812	15918812	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15918812G>A	uc002nbq.2	-	1	125	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CGACGAGGATGAATTGGGTCA	0.537													9	85					0	0	1	0	0
OR10H1	26539	broad.mit.edu	37	19	15918838	15918838	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:15918838C>T	uc002nbq.2	-	1	99	c.10G>A	c.(10-12)GCC>ACC	p.A4T		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GAGTGATTGGCTCTCTGCATG	0.532													16	53					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16045048	16045048	+	Silent	SNP	C	T	T	rs140733161		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:16045048C>T	uc002nbu.2	-	2	207	c.171G>A	c.(169-171)CAG>CAA	p.Q57Q	CYP4F11_uc010eab.1_Silent_p.Q57Q|CYP4F11_uc002nbt.2_Silent_p.Q57Q	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	57					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						AAAACCAGTTCTGTTTCGGGG	0.612													4	53					0	0	1	0	0
OR10H4	126541	broad.mit.edu	37	19	16059904	16059904	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:16059904C>T	uc010xov.1	+	1	87	c.87C>T	c.(85-87)TTC>TTT	p.F29F		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CCATCTTGTTCCTGCTGTACC	0.483													18	76					0	0	1	0	0
OR10H4	126541	broad.mit.edu	37	19	16060264	16060264	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:16060264C>T	uc010xov.1	+	1	447	c.447C>T	c.(445-447)ACC>ACT	p.T149T		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TGGCCTGTACCTGGGCTGGTG	0.527													10	40					0	0	1	0	0
RAB8A	4218	broad.mit.edu	37	19	16222790	16222790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:16222790C>T	uc002ndn.3	+	1	301	c.79C>T	c.(79-81)CGC>TGC	p.R27C	RAB8A_uc002ndm.1_Missense_Mutation_p.R27C|RAB8A_uc010xpc.1_Missense_Mutation_p.R27C	NM_005370	NP_005361	P61006	RAB8A_HUMAN	mel transforming oncogene	27					cilium assembly|Golgi vesicle fusion to target membrane|protein transport|small GTPase mediated signal transduction|vesicle docking involved in exocytosis	Golgi apparatus|nonmotile primary cilium|perinuclear region of cytoplasm|plasma membrane	GTP binding|protein binding			skin(1)	1						TGTCCTGTTCCGCTTCTCCGA	0.632													44	194					0	0	1	0	0
CIB3	117286	broad.mit.edu	37	19	16280539	16280540	+	Missense_Mutation	DNP	AG	GC	GC			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:16280539_16280540AG>GC	uc002nds.2	-	3	99_100	c.99_100CT>GC	c.(97-102)CGCTAC>CGGCAC	p.Y34H	CIB3_uc010eae.2_Intron|CIB3_uc010eaf.2_Intron|CIB3_uc010eag.2_Intron	NM_054113	NP_473454	Q96Q77	CIB3_HUMAN	DNA-dependent protein kinase catalytic	34							calcium ion binding			ovary(1)	1						AGGTCCTGGTAGCGATAGAAGA	0.53													7	23					0	0	1	0	0
AP1M1	8907	broad.mit.edu	37	19	16339651	16339651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:16339651C>T	uc002ndu.2	+	9	1132	c.959C>T	c.(958-960)GCC>GTC	p.A320V	AP1M1_uc002ndv.2_Missense_Mutation_p.A332V|AP1M1_uc010xpd.1_Intron	NM_032493	NP_115882	Q9BXS5	AP1M1_HUMAN	adaptor-related protein complex 1, mu 1 subunit	320	MHD.				cellular membrane organization|endosome to melanosome transport|interspecies interaction between organisms|intracellular protein transport|melanosome organization|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(3)|breast(1)	4						CCCAATGATGCCGACTCACCC	0.602													4	44					0	0	1	0	0
EPS15L1	58513	broad.mit.edu	37	19	16528870	16528870	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:16528870T>G	uc002ndz.1	-	11	1002	c.996A>C	c.(994-996)CAA>CAC	p.Q332H	EPS15L1_uc002ndx.2_Missense_Mutation_p.Q332H|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpe.1_Missense_Mutation_p.Q222H|EPS15L1_uc010xpf.1_Missense_Mutation_p.Q235H|EPS15L1_uc002nea.1_Missense_Mutation_p.Q332H|EPS15L1_uc010eah.1_Missense_Mutation_p.Q332H|EPS15L1_uc002neb.1_Missense_Mutation_p.Q178H|EPS15L1_uc002nec.1_Missense_Mutation_p.Q332H	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	332	EH 3.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						CTAACGCGAATTGGTCTTTGC	0.547											OREG0025334	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	61					0	0	1	0	0
SIN3B	23309	broad.mit.edu	37	19	16977262	16977262	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:16977262G>A	uc002ney.1	+	13	1811	c.1797G>A	c.(1795-1797)GCG>GCA	p.A599A	SIN3B_uc002nez.1_Silent_p.A567A|SIN3B_uc010xpi.1_Silent_p.A157A	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	599					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						ATGAGAAGGCGTACCTCAAGT	0.592													13	52					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17025287	17025287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17025287G>A	uc002nfb.2	-	29	3981	c.3949C>T	c.(3949-3951)CCG>TCG	p.P1317S		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1270						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GCTGTCAGCGGGACAGTGCCG	0.632													7	33					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17038839	17038839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17038839C>T	uc002nfb.2	-	25	3523	c.3491G>A	c.(3490-3492)CGA>CAA	p.R1164Q		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1117						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GGCGGTGGCTCGCTCAGACCC	0.617													13	77					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17086957	17086957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17086957G>A	uc002nfb.2	-	16	1936	c.1904C>T	c.(1903-1905)TCA>TTA	p.S635L		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	588						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						ATACGTCACTGAAACCTTGGC	0.393													9	36					0	0	1	0	0
MYO9B	4650	broad.mit.edu	37	19	17321170	17321170	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17321170C>G	uc010eak.2	+	37	5929	c.5777C>G	c.(5776-5778)TCT>TGT	p.S1926C	MYO9B_uc002nfi.2_Missense_Mutation_p.S1926C|MYO9B_uc002nfj.1_Intron|MYO9B_uc002nfm.1_Missense_Mutation_p.S86C	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	1926	Tail.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						GGGTTTTCGTCTCCCTATGAG	0.627													2	9					0	0	1	0	0
USHBP1	83878	broad.mit.edu	37	19	17362445	17362445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17362445C>T	uc002nfs.1	-	12	1981	c.1868G>A	c.(1867-1869)CGA>CAA	p.R623Q	USHBP1_uc002nfr.1_Missense_Mutation_p.R249Q|USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Missense_Mutation_p.R559Q	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	623	Potential.						PDZ domain binding			ovary(1)	1						CCGTCTGGCTCGCCCCTTCTG	0.612													17	117					0	0	1	0	0
USHBP1	83878	broad.mit.edu	37	19	17369153	17369153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17369153C>T	uc002nfs.1	-	8	1201	c.1088G>A	c.(1087-1089)CGG>CAG	p.R363Q	USHBP1_uc002nfr.1_5'UTR|USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Missense_Mutation_p.R299Q	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	363							PDZ domain binding			ovary(1)	1						GTCGGCCTCCCGCAGAGCAAG	0.527													4	73					0	0	1	0	0
GTPBP3	84705	broad.mit.edu	37	19	17452353	17452353	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17452353T>C	uc010eas.2	+	9	1385	c.1320T>C	c.(1318-1320)GGT>GGC	p.G440G	GTPBP3_uc010xpo.1_Silent_p.G462G|GTPBP3_uc002ngh.3_Silent_p.G419G|GTPBP3_uc002ngg.3_Silent_p.G472G|GTPBP3_uc002ngi.3_Silent_p.G106G	NM_032620	NP_116009	Q969Y2	GTPB3_HUMAN	GTP binding protein 3 (mitochondrial) isoform V	440					tRNA modification	mitochondrion	GTP binding|GTPase activity			skin(1)	1						ACCTCCAGGGTTGCCTGGATG	0.612													4	75					0	0	1	0	0
SLC27A1	376497	broad.mit.edu	37	19	17612167	17612167	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17612167G>A	uc002ngu.1	+	11	1772	c.1722G>A	c.(1720-1722)AAG>AAA	p.K574K	SLC27A1_uc010xpp.1_Silent_p.K395K|SLC27A1_uc002ngv.1_Silent_p.K176K	NM_198580	NP_940982	Q6PCB7	S27A1_HUMAN	solute carrier family 27, member 1	574	Cytoplasmic (Potential).				cardiolipin biosynthetic process|fatty acid metabolic process|long-chain fatty acid transport|negative regulation of phospholipid biosynthetic process|phosphatidic acid biosynthetic process|phosphatidylcholine biosynthetic process|phosphatidylethanolamine biosynthetic process|phosphatidylinositol biosynthetic process|phosphatidylserine biosynthetic process|transmembrane transport	endomembrane system|integral to membrane	fatty acid transporter activity|nucleotide binding				0						AGCTGCAGAAGGTGCTGGCAC	0.642													9	55					0	0	1	0	0
FAM129C	199786	broad.mit.edu	37	19	17644466	17644466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17644466G>A	uc010xpr.1	+	5	614	c.476G>A	c.(475-477)CGA>CAA	p.R159Q	FAM129C_uc010xpq.1_Missense_Mutation_p.R159Q|FAM129C_uc010xps.1_Missense_Mutation_p.R128Q|FAM129C_uc010xpt.1_RNA	NM_173544	NP_775815	Q86XR2	NIBL2_HUMAN	B-cell novel protein 1 isoform a	159											0						ACTTCCCAGCGAGAATATCTC	0.473													20	67					0	0	1	0	0
GLT25D1	79709	broad.mit.edu	37	19	17679497	17679497	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17679497C>T	uc002nhc.1	+	5	816	c.804C>T	c.(802-804)GTC>GTT	p.V268V	GLT25D1_uc010eax.1_Silent_p.V36V	NM_024656	NP_078932	Q8NBJ5	GT251_HUMAN	glycosyltransferase 25 domain containing 1	268					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity				0						ACATCATCGTCTTTGCCTTCT	0.567													5	32					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17743712	17743712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17743712C>T	uc002nhd.2	-	28	3571	c.3571G>A	c.(3571-3573)GAC>AAC	p.D1191N		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1103	MHD1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						CGATGCTTGTCGTGCTCTGGC	0.537													5	38					0	0	1	0	0
MAP1S	55201	broad.mit.edu	37	19	17836764	17836764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17836764C>T	uc002nhe.1	+	5	580	c.571C>T	c.(571-573)CTC>TTC	p.L191F	MAP1S_uc010eaz.1_RNA|MAP1S_uc010eba.1_Missense_Mutation_p.L191F|MAP1S_uc002nhf.1_Intron|MAP1S_uc010xpv.1_Missense_Mutation_p.L165F	NM_018174	NP_060644	Q66K74	MAP1S_HUMAN	BPY2 interacting protein 1	191	Necessary for the microtubule-organizing center localization.				apoptosis|brain development|microtubule bundle formation|mitochondrion transport along microtubule|neuron projection morphogenesis	cytosol|dendrite|microtubule|neuronal cell body|nucleus|perinuclear region of cytoplasm|spindle|synapse	actin filament binding|beta-tubulin binding|DNA binding|microtubule binding			central_nervous_system(1)	1						GGCGCTCCGGCTCCAGCTGCG	0.682													7	18					0	0	1	0	0
MAP1S	55201	broad.mit.edu	37	19	17844133	17844133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17844133C>T	uc002nhe.1	+	6	2929	c.2920C>T	c.(2920-2922)CTC>TTC	p.L974F	MAP1S_uc010eba.1_Intron|MAP1S_uc002nhf.1_Missense_Mutation_p.L222F|MAP1S_uc010xpv.1_Missense_Mutation_p.L948F	NM_018174	NP_060644	Q66K74	MAP1S_HUMAN	BPY2 interacting protein 1	974	Necessary for association with actin (By similarity).|Necessary for interaction with RASSF1 isoform A and isoform C.|Necessary for the mitochondrial aggregation and genome destruction.				apoptosis|brain development|microtubule bundle formation|mitochondrion transport along microtubule|neuron projection morphogenesis	cytosol|dendrite|microtubule|neuronal cell body|nucleus|perinuclear region of cytoplasm|spindle|synapse	actin filament binding|beta-tubulin binding|DNA binding|microtubule binding			central_nervous_system(1)	1						CGTGCGCGCGCTCTGCTACGT	0.672													5	18					0	0	1	0	0
FCHO1	23149	broad.mit.edu	37	19	17892525	17892525	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17892525C>T	uc010ebb.2	+	22	2022	c.1833C>T	c.(1831-1833)GTC>GTT	p.V611V	FCHO1_uc002nhg.3_Silent_p.V611V|FCHO1_uc002nhh.2_Silent_p.V611V|FCHO1_uc010xpw.1_Silent_p.V561V|FCHO1_uc002nhi.2_Silent_p.V67V|FCHO1_uc002nhj.2_5'UTR	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	611										breast(1)	1						CCCCAGGAGTCTCCCGGGGTC	0.627													28	116					0	0	1	0	0
FCHO1	23149	broad.mit.edu	37	19	17892612	17892612	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17892612C>T	uc010ebb.2	+	22	2109	c.1920C>T	c.(1918-1920)TTC>TTT	p.F640F	FCHO1_uc002nhg.3_Silent_p.F640F|FCHO1_uc002nhh.2_Silent_p.F640F|FCHO1_uc010xpw.1_Silent_p.F590F|FCHO1_uc002nhi.2_Silent_p.F96F|FCHO1_uc002nhj.2_5'UTR	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	640										breast(1)	1						ACGCCTACTTCCGTGGCCACA	0.637													20	79					0	0	1	0	0
B3GNT3	10331	broad.mit.edu	37	19	17922427	17922427	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17922427C>T	uc002nhk.1	+	3	700	c.615C>T	c.(613-615)TTC>TTT	p.F205F	B3GNT3_uc002nhl.1_Silent_p.F205F|B3GNT3_uc010ebd.1_Silent_p.F205F|B3GNT3_uc010ebe.1_Silent_p.F205F	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	205	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						ACGCCAGCTTCGTGCTCAACG	0.582													12	34					0	0	1	0	0
JAK3	3718	broad.mit.edu	37	19	17942510	17942510	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:17942510G>A	uc002nhn.3	-	20	2878	c.2778C>T	c.(2776-2778)CTC>CTT	p.L926L	JAK3_uc010ebh.2_Intron|JAK3_uc002nho.2_Silent_p.L926L	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	926	Protein kinase 2.				B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						AATAGAGAAGGAGGCGGCTGG	0.697		2	Mis		acute megakaryocytic leukemia|								5	21					0	0	1	0	0
IL12RB1	3594	broad.mit.edu	37	19	18180412	18180412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:18180412C>T	uc002nhw.1	-	10	1197	c.1133G>A	c.(1132-1134)GGG>GAG	p.G378E	IL12RB1_uc010xqb.1_Missense_Mutation_p.G378E|IL12RB1_uc002nhx.1_Missense_Mutation_p.G418E	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	378	Extracellular (Potential).|Fibronectin type-III 4.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						GGCAAGGCCCCCGTCCTGGCC	0.627													9	43					0	0	1	0	0
IL12RB1	3594	broad.mit.edu	37	19	18193024	18193024	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:18193024G>A	uc002nhw.1	-	3	239	c.175C>T	c.(175-177)CGT>TGT	p.R59C	IL12RB1_uc010xqb.1_Missense_Mutation_p.R59C|IL12RB1_uc002nhx.1_Missense_Mutation_p.R99C|IL12RB1_uc002nhy.2_Missense_Mutation_p.R59C	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	59	Extracellular (Potential).|Fibronectin type-III 1.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						CACTCGTAACGATCACTGGAT	0.592													4	22					0	0	1	0	0
RAB3A	5864	broad.mit.edu	37	19	18313430	18313430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:18313430G>A	uc002nie.2	-	2	290	c.121C>T	c.(121-123)CGC>TGC	p.R41C		NM_002866	NP_002857	P20336	RAB3A_HUMAN	RAB3A, member RAS oncogene family	41					glutamate secretion|protein transport|small GTPase mediated signal transduction	clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|plasma membrane|synaptic vesicle	GTP binding|GTPase activity				0						TCAGCATAGCGGAAGAGGAAG	0.542											OREG0025360	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	157					0	0	1	0	0
PDE4C	5143	broad.mit.edu	37	19	18321934	18321934	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:18321934G>A	uc010xqc.1	-	15	2424	c.1944C>T	c.(1942-1944)CCC>CCT	p.P648P	PDE4C_uc002nik.3_Silent_p.P648P|PDE4C_uc002nil.3_Silent_p.P648P|PDE4C_uc002nif.3_Silent_p.P417P|PDE4C_uc002nig.3_Silent_p.P363P|PDE4C_uc002nih.3_Silent_p.P418P|PDE4C_uc010ebk.2_Silent_p.P542P|PDE4C_uc002nii.3_Silent_p.P616P|PDE4C_uc010ebl.2_Silent_p.P362P	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	648					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding	p.P648P(1)		ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	CGTCCCGCTCGGGGTTGGTGA	0.438													11	99					0	0	1	0	0
PDE4C	5143	broad.mit.edu	37	19	18322014	18322014	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:18322014C>T	uc010xqc.1	-	15	2344	c.1864G>A	c.(1864-1866)GAC>AAC	p.D622N	PDE4C_uc002nik.3_Missense_Mutation_p.D622N|PDE4C_uc002nil.3_Missense_Mutation_p.D622N|PDE4C_uc002nif.3_Missense_Mutation_p.D391N|PDE4C_uc002nig.3_Missense_Mutation_p.D337N|PDE4C_uc002nih.3_Missense_Mutation_p.D392N|PDE4C_uc010ebk.2_Missense_Mutation_p.D516N|PDE4C_uc002nii.3_Missense_Mutation_p.D590N|PDE4C_uc010ebl.2_Missense_Mutation_p.D336N	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	622					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	TCCAGCAGGTCCTGTGCATCT	0.622													15	55					0	0	1	0	0
PDE4C	5143	broad.mit.edu	37	19	18327613	18327613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:18327613C>T	uc010xqc.1	-	12	1903	c.1423G>A	c.(1423-1425)GAT>AAT	p.D475N	PDE4C_uc002nik.3_Missense_Mutation_p.D475N|PDE4C_uc002nil.3_Missense_Mutation_p.D475N|PDE4C_uc002nif.3_Missense_Mutation_p.D244N|PDE4C_uc002nig.3_Missense_Mutation_p.D190N|PDE4C_uc002nih.3_Missense_Mutation_p.D245N|PDE4C_uc010ebk.2_Missense_Mutation_p.D369N|PDE4C_uc002nii.3_Missense_Mutation_p.D443N|PDE4C_uc010ebl.2_Missense_Mutation_p.D189N|PDE4C_uc010xqd.1_Missense_Mutation_p.D244N	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	475					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	TGGAAGATATCGCAGTTCTCT	0.602													25	68					0	0	1	0	0
KIAA1683	80726	broad.mit.edu	37	19	18368106	18368106	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:18368106C>A	uc002nin.2	-	4	3643	c.3427G>T	c.(3427-3429)GTT>TTT	p.V1143F	PDE4C_uc002nil.3_5'Flank|KIAA1683_uc010ebn.2_Missense_Mutation_p.V1330F|KIAA1683_uc010xqe.1_Missense_Mutation_p.V1097F|KIAA1683_uc010xqf.1_RNA	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	1143	IQ 6.					mitochondrion				ovary(2)	2						GTGGCTTGAACTATCTTCGCT	0.622													10	53					0.000978159	0.000987223	1	1	0
LRRC25	126364	broad.mit.edu	37	19	18507060	18507060	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:18507060G>A	uc002niw.2	-	1	1356	c.714C>T	c.(712-714)TCC>TCT	p.S238S	LRRC25_uc002nix.2_Silent_p.S238S	NM_145256	NP_660299	Q8N386	LRC25_HUMAN	leucine rich repeat containing 25 precursor	238	Cytoplasmic (Potential).					integral to membrane					0						AGTCGGGAGTGGAGGGGCAGG	0.607													14	67					0	0	1	0	0
SSBP4	170463	broad.mit.edu	37	19	18538197	18538197	+	Silent	SNP	C	T	T	rs150017206		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:18538197C>T	uc002niy.2	+	2	334	c.96C>T	c.(94-96)ATC>ATT	p.I32I	SSBP4_uc010ebp.2_Silent_p.I32I|SSBP4_uc002niz.2_Silent_p.I32I	NM_032627	NP_116016	Q9BWG4	SSBP4_HUMAN	single stranded DNA binding protein 4 isoform a	32	LisH.					nucleus	single-stranded DNA binding				0						TGCTGCACATCGGTGCCCAGA	0.637													14	34					0	0	1	0	0
ELL	8178	broad.mit.edu	37	19	18557151	18557152	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:18557151_18557152GG>AT	uc002njh.2	-	10	1743_1744	c.1671_1672CC>AT	c.(1669-1674)CTCCGG>CTATGG	p.R558W	ELL_uc010ebq.2_Missense_Mutation_p.R501W|ELL_uc002njg.2_Missense_Mutation_p.R425W	NM_006532	NP_006523	P55199	ELL_HUMAN	elongation factor RNA polymerase II	558					positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	Cajal body|nuclear speck|transcription elongation factor complex	protein binding			lung(1)	1				GBM - Glioblastoma multiforme(1328;7.81e-07)		GAGAGCTGCCGGAGCTGGGCGT	0.678			T	MLL	AL								8	12					0	0	1	0	0
CRTC1	23373	broad.mit.edu	37	19	18888006	18888006	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:18888006C>T	uc002nkb.3	+	14	1807	c.1719C>T	c.(1717-1719)CTC>CTT	p.L573L	CRTC1_uc010ebv.2_Silent_p.L589L|CRTC1_uc010ebw.2_Silent_p.L409L|CRTC1_uc002nkc.3_Silent_p.L271L	NM_015321	NP_056136	Q6UUV9	CRTC1_HUMAN	mucoepidermoid carcinoma translocated 1 isoform	573					interspecies interaction between organisms|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	cAMP response element binding protein binding|protein binding		CRTC1/MAML2(516)	salivary_gland(474)|lung(35)|thyroid(4)|breast(3)|skin(2)|ovary(1)	519						CCCCCAGCCTCTCTAAAGAAC	0.632													8	71					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19329750	19329750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:19329750G>A	uc002nlz.2	+	3	199	c.100G>A	c.(100-102)GAA>AAA	p.E34K		NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	34					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CGATGCCAGCGAAAGGGGGCT	0.607													7	29					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19335124	19335124	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:19335124C>T	uc002nlz.2	+	5	759	c.660C>T	c.(658-660)ATC>ATT	p.I220I	NCAN_uc010ecc.1_5'Flank	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	220	Link 1.				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			GGTATCCTATCACCCAGTCCC	0.577													35	100					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19338712	19338712	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:19338712C>T	uc002nlz.2	+	8	2382	c.2283C>T	c.(2281-2283)TTC>TTT	p.F761F	NCAN_uc010ecc.1_Silent_p.F325F	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	761					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CTGGGGTCTTCGACACAGCAG	0.582													20	74					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19338912	19338912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:19338912C>T	uc002nlz.2	+	8	2582	c.2483C>T	c.(2482-2484)CCC>CTC	p.P828L	NCAN_uc010ecc.1_Missense_Mutation_p.P392L	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	828					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			ACTGTGAATCCCATGGATTCC	0.562													12	59					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19339201	19339201	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:19339201G>A	uc002nlz.2	+	8	2871	c.2772G>A	c.(2770-2772)GGG>GGA	p.G924G	NCAN_uc010ecc.1_Silent_p.G488G	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	924					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			GTCCCCTAGGGAAACCGGCTG	0.632													22	91					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19345875	19345875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:19345875C>T	uc002nlz.2	+	10	3319	c.3220C>T	c.(3220-3222)CCC>TCC	p.P1074S	NCAN_uc010ecc.1_Missense_Mutation_p.P638S	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1074	EGF-like 2; calcium-binding (Potential).				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CCTTTGCCTCCCCAGCTATGG	0.542													29	120					0	0	1	0	0
TM6SF2	53345	broad.mit.edu	37	19	19379523	19379523	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:19379523G>A	uc002nmd.1	-	6	575	c.525C>T	c.(523-525)ACC>ACT	p.T175T	HAPLN4_uc002nmc.2_Intron	NM_001001524	NP_001001524	Q9BZW4	TM6S2_HUMAN	transmembrane 6 superfamily member 2	175	Helical; (Potential).					integral to membrane					0			Epithelial(12;0.0151)			GGTAGGGGATGGTGAGGAAGA	0.602													4	35					0	0	1	0	0
SF4	57794	broad.mit.edu	37	19	19387761	19387762	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:19387761_19387762GG>AA	uc002nmh.2	-	13	1907_1908	c.1905_1906CC>TT	c.(1903-1908)AACCCC>AATTCC	p.P636S	SF4_uc002nmf.2_Missense_Mutation_p.P186S|SF4_uc002nmg.2_Missense_Mutation_p.P186S|SF4_uc002nmi.2_Missense_Mutation_p.P426S|SF4_uc002nmj.2_Missense_Mutation_p.P426S|SF4_uc002nme.2_Missense_Mutation_p.P186S	NM_172231	NP_757386	Q8IWZ8	SUGP1_HUMAN	splicing factor 4	636					nuclear mRNA splicing, via spliceosome	nucleoplasm|spliceosomal complex	RNA binding				0						CGTACCAGGGGGTTGGGCCGGA	0.629													5	87					0	0	1	0	0
KIAA0892	23383	broad.mit.edu	37	19	19448000	19448001	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:19448000_19448001CC>TT	uc002nmk.3	+	4	421_422	c.382_383CC>TT	c.(382-384)CCG>TTG	p.P128L		NM_015329	NP_056144	Q9Y6X3	SCC4_HUMAN	hypothetical protein LOC23383 precursor	128	TPR 1.				cell division|maintenance of mitotic sister chromatid cohesion	chromatin|nucleoplasm|SMC loading complex	protein N-terminus binding				0						TGCAGCAAAGCCGCTGCTGCGG	0.53													5	27					0	0	1	0	0
NDUFA13	51079	broad.mit.edu	37	19	19646358	19646358	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:19646358C>T	uc010xqy.1	+	7	1069	c.810C>T	c.(808-810)GCC>GCT	p.A270A	YJEFN3_uc002nmt.1_Silent_p.A188A|YJEFN3_uc010ecf.1_Silent_p.A138A|YJEFN3_uc002nmu.1_RNA|CILP2_uc002nmv.3_5'Flank|CILP2_uc002nmw.3_5'Flank	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	Error:Variant_position_missing_in_Q9P0J0_after_alignment					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	TTAACGAAGCCTATGGGCTGG	0.697													5	26					0	0	1	0	0
GMIP	51291	broad.mit.edu	37	19	19740809	19740809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:19740809G>A	uc002nnd.2	-	21	2993	c.2876C>T	c.(2875-2877)CCG>CTG	p.P959L	LPAR2_uc002nnb.3_5'Flank|LPAR2_uc002nna.3_5'Flank|LPAR2_uc002nnc.3_5'Flank|GMIP_uc010xrb.1_Missense_Mutation_p.P933L|GMIP_uc010xrc.1_Missense_Mutation_p.P930L	NM_016573	NP_057657	Q9P107	GMIP_HUMAN	GEM interacting protein	959					negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			ovary(1)	1						CTGGACGTCCGGGCAGCAGGT	0.597													4	16					0	0	1	0	0
LOC284441	284441	broad.mit.edu	37	19	20368550	20368550	+	Translation_Start_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:20368550G>A	uc002nov.2	+	1	94	c.-657G>A	c.(-659--655)AGGTG>AGATG			NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						GAGCAGGAAGGTGGTGGTGTG	0.542													5	38					0	0	1	0	0
ZNF626	199777	broad.mit.edu	37	19	20807457	20807457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:20807457G>A	uc002npb.1	-	4	1376	c.1226C>T	c.(1225-1227)TCC>TTC	p.S409F	ZNF626_uc002npc.1_Missense_Mutation_p.S333F	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	409	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						AAGGTTAGAGGAGTACTTAAA	0.398													4	35					0	0	1	0	0
ZNF626	199777	broad.mit.edu	37	19	20807625	20807625	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:20807625G>A	uc002npb.1	-	4	1208	c.1058C>T	c.(1057-1059)TCC>TTC	p.S353F	ZNF626_uc002npc.1_Missense_Mutation_p.S277F	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	353	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						AAGGGTAGAGGAGTACTTAAA	0.393													7	39					0	0	1	0	0
ZNF626	199777	broad.mit.edu	37	19	20808005	20808005	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:20808005C>T	uc002npb.1	-	4	828	c.678G>A	c.(676-678)GAG>GAA	p.E226E	ZNF626_uc002npc.1_Silent_p.E150E	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	226					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TGTAGGGTTTCTCTCCAGTAT	0.398													3	19					0	0	1	0	0
ZNF708	7562	broad.mit.edu	37	19	21476108	21476108	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:21476108G>A	uc002npq.1	-	4	1858	c.1660C>T	c.(1660-1662)CAT>TAT	p.H554Y	ZNF708_uc002npr.1_Missense_Mutation_p.H490Y|ZNF708_uc010ecs.1_Missense_Mutation_p.H490Y	NM_021269	NP_067092	P17019	ZN708_HUMAN	zinc finger protein 708	554	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(4)|skin(2)	6						TCTTTGGTATGAATTCTCTTA	0.318													4	31					0	0	1	0	0
ZNF429	353088	broad.mit.edu	37	19	21719572	21719572	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:21719572C>T	uc002nqd.1	+	4	854	c.717C>T	c.(715-717)AAC>AAT	p.N239N	ZNF429_uc010ecu.1_Intron	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	239	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AAGCATTTAACCACTACTCAA	0.393													5	35					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22154571	22154571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:22154571C>T	uc002nqp.2	-	6	3030	c.2881G>A	c.(2881-2883)GAA>AAA	p.E961K	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TTGCCACATTCTTCACATTTG	0.428													4	16					0	0	1	0	0
ZNF681	148213	broad.mit.edu	37	19	23937634	23937634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:23937634C>T	uc002nrk.3	-	3	359	c.217G>A	c.(217-219)GAA>AAA	p.E73K	ZNF681_uc002nrl.3_Missense_Mutation_p.E4K|ZNF681_uc002nrj.3_Missense_Mutation_p.E4K|ZNF681_uc002nrm.1_RNA	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	73	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				CCTGGGGGTTCGGCCACCATC	0.418													12	50					0	0	1	0	0
LOC100101266	100101266	broad.mit.edu	37	19	24345721	24345721	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:24345721C>T	uc010edb.1	-	1		c.529G>A				NR_003603				Homo sapiens hepatitis A virus cellular receptor 1 pseudogene (LOC100101266), non-coding RNA.												0						TTGAAATGCTCGTTGTTGTTG	0.453													8	103					0	0	1	0	0
CCNE1	898	broad.mit.edu	37	19	30313211	30313211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:30313211C>T	uc002nsn.2	+	10	1088	c.905C>T	c.(904-906)TCG>TTG	p.S302L	CCNE1_uc002nso.2_Missense_Mutation_p.S287L|CCNE1_uc002nsp.2_Missense_Mutation_p.S49L	NM_001238	NP_001229	P24864	CCNE1_HUMAN	cyclin E1 isoform 1	302					androgen receptor signaling pathway|cell division|positive regulation of transcription, DNA-dependent|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol|nucleoplasm	androgen receptor binding|protein kinase binding|transcription coactivator activity			lung(2)	2	all_cancers(1;2.19e-31)|all_epithelial(1;1.49e-30)|all_lung(1;1.37e-11)|Lung NSC(1;2.35e-11)|Ovarian(5;0.000902)|Breast(6;0.0203)|Esophageal squamous(110;0.195)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|Epithelial(1;6.85e-98)|all cancers(1;1.38e-94)|OV - Ovarian serous cystadenocarcinoma(1;1.38e-90)|STAD - Stomach adenocarcinoma(5;5.8e-07)|GBM - Glioblastoma multiforme(4;0.0394)|Lung(7;0.092)|LUAD - Lung adenocarcinoma(5;0.115)|BRCA - Breast invasive adenocarcinoma(6;0.183)|COAD - Colon adenocarcinoma(1;0.188)|Colorectal(1;0.202)			CTTGCTGCTTCGGCCTTGTAT	0.443													19	124					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30934472	30934472	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:30934472G>A	uc002nsu.1	+	2	141	c.3G>A	c.(1-3)ATG>ATA	p.M1I	ZNF536_uc010edd.1_Missense_Mutation_p.M1I	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					TTTCAGGGATGGAAGAAGCGA	0.587													18	90					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30934614	30934614	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:30934614G>A	uc002nsu.1	+	2	283	c.145G>A	c.(145-147)GAG>AAG	p.E49K	ZNF536_uc010edd.1_Missense_Mutation_p.E49K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	49					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					TGCCTTCCCCGAGCTCCATCC	0.667													6	63					0	0	1	0	0
TSHZ3	57616	broad.mit.edu	37	19	31767827	31767827	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:31767827G>A	uc002nsy.3	-	2	2937	c.2872C>T	c.(2872-2874)CGA>TGA	p.R958*		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	958	Homeobox; atypical.				negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					CCTGTCCTTCGAAGCTGGTAT	0.542													6	35					0	0	1	0	0
TSHZ3	57616	broad.mit.edu	37	19	31768061	31768061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:31768061C>T	uc002nsy.3	-	2	2703	c.2638G>A	c.(2638-2640)GAG>AAG	p.E880K		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	880					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					TCAGCCTCCTCCAGAGTGGCC	0.582													9	38					0	0	1	0	0
DPY19L3	147991	broad.mit.edu	37	19	32949392	32949392	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:32949392C>T	uc002ntg.2	+	12	1475	c.1299C>T	c.(1297-1299)TTC>TTT	p.F433F	DPY19L3_uc002nth.1_Silent_p.F433F|DPY19L3_uc002nti.1_RNA	NM_207325	NP_997208	Q6ZPD9	D19L3_HUMAN	dpy-19-like 3	433	Helical; (Potential).					integral to membrane				ovary(4)	4	Esophageal squamous(110;0.162)					TTGTAGCATTCGTTGTTGCCT	0.358													19	87					0	0	1	0	0
SLC7A9	11136	broad.mit.edu	37	19	33333180	33333180	+	Missense_Mutation	SNP	G	A	A	rs143618205		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:33333180G>A	uc002ntv.3	-	11	1235	c.1118C>T	c.(1117-1119)TCG>TTG	p.S373L	SLC7A9_uc002ntt.3_RNA|SLC7A9_uc002ntu.3_Missense_Mutation_p.S373L|SLC7A9_uc002ntw.3_Missense_Mutation_p.S164L	NM_001126335	NP_001119807	P82251	BAT1_HUMAN	solute carrier family 7, member 9	373	Extracellular (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	integral to plasma membrane	L-cystine transmembrane transporter activity|neutral amino acid transmembrane transporter activity|peptide antigen binding	p.S373L(1)		skin(1)	1	Esophageal squamous(110;0.137)				L-Cystine(DB00138)	ATTGACTAACGAGTTTATGTC	0.398													5	62					0	0	1	0	0
RHPN2	85415	broad.mit.edu	37	19	33486951	33486951	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:33486951G>A	uc002nuf.2	-	11	1467	c.1401C>T	c.(1399-1401)ATC>ATT	p.I467I	RHPN2_uc010xro.1_Silent_p.I316I|RHPN2_uc002nue.2_Silent_p.I197I	NM_033103	NP_149094	Q8IUC4	RHPN2_HUMAN	rhophilin, Rho GTPase binding protein 2	467					signal transduction	perinuclear region of cytoplasm	protein binding			central_nervous_system(5)|ovary(1)	6	Esophageal squamous(110;0.137)					TGGGGGCGTCGATCAGGTTCA	0.622													10	54					0	0	1	0	0
WDR88	126248	broad.mit.edu	37	19	33623218	33623218	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:33623218C>T	uc002nui.2	+	1	221	c.143C>T	c.(142-144)TCG>TTG	p.S48L		NM_173479	NP_775750	Q6ZMY6	WDR88_HUMAN	PQQ repeat and WD repeat domain containing	48										ovary(1)|breast(1)|central_nervous_system(1)	3	Esophageal squamous(110;0.137)					TTCAAGCTGTCGATCCCGCAC	0.657													13	110					0	0	1	0	0
WDR88	126248	broad.mit.edu	37	19	33638591	33638591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:33638591G>A	uc002nui.2	+	4	595	c.517G>A	c.(517-519)GAC>AAC	p.D173N		NM_173479	NP_775750	Q6ZMY6	WDR88_HUMAN	PQQ repeat and WD repeat domain containing	173	WD 2.									ovary(1)|breast(1)|central_nervous_system(1)	3	Esophageal squamous(110;0.137)					GAGGGCCTGGGACCTGGAGAC	0.488													5	41					0	0	1	0	0
SLC7A10	56301	broad.mit.edu	37	19	33700389	33700389	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:33700389C>T	uc002num.2	-	10	1413	c.1266G>A	c.(1264-1266)GTG>GTA	p.V422V	SLC7A10_uc002nul.2_Silent_p.V269V	NM_019849	NP_062823	Q9NS82	AAA1_HUMAN	solute carrier family 7, member 10	422					blood coagulation|cellular nitrogen compound metabolic process|ion transport|leukocyte migration	integral to plasma membrane	L-serine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(110;0.137)					TGAGAAGGTTCACCTGGGGAA	0.607													7	49					0	0	1	0	0
CHST8	64377	broad.mit.edu	37	19	34263248	34263248	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:34263248C>T	uc002nus.3	+	5	1060	c.555C>T	c.(553-555)TTC>TTT	p.F185F	CHST8_uc002nut.3_Silent_p.F185F|CHST8_uc002nuu.2_Silent_p.F185F	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	185	Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					CCCGTATCTTCGTGGAGGACC	0.706													9	43					0	0	1	0	0
LSM14A	26065	broad.mit.edu	37	19	34712476	34712476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:34712476C>T	uc002nvb.3	+	9	1397	c.1201C>T	c.(1201-1203)CGT>TGT	p.R401C	LSM14A_uc002nva.3_Missense_Mutation_p.R401C|LSM14A_uc010xru.1_Missense_Mutation_p.R360C|LSM14A_uc002nvc.3_Missense_Mutation_p.R207C	NM_001114093	NP_001107565	Q8ND56	LS14A_HUMAN	LSM14 homolog A isoform a	401					cytoplasmic mRNA processing body assembly|multicellular organismal development|regulation of translation	cytoplasmic mRNA processing body|intracellular membrane-bounded organelle|stress granule				skin(1)	1	Esophageal squamous(110;0.162)					AATCCCACTTCGTCCAAACCG	0.507													4	42					0	0	1	0	0
WTIP	126374	broad.mit.edu	37	19	34984006	34984006	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:34984006C>T	uc002nvm.2	+	3	834	c.834C>T	c.(832-834)TTC>TTT	p.F278F		NM_001080436	NP_001073905			Wilms tumor 1 interacting protein												0	all_lung(56;5.94e-07)|Lung NSC(56;9.35e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			AGGAGGACTTCCTGGTGAGTC	0.627													15	94					0	0	1	0	0
ZNF599	148103	broad.mit.edu	37	19	35250155	35250155	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:35250155G>A	uc010edn.1	-	4	1939	c.1551C>T	c.(1549-1551)ACC>ACT	p.T517T	ZNF599_uc010edm.1_Silent_p.T480T	NM_001007248	NP_001007249	Q96NL3	ZN599_HUMAN	zinc finger protein 599	517	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			TTGCAGGTTGGGTAAAAGCCT	0.408													6	28					0	0	1	0	0
FXYD7	53822	broad.mit.edu	37	19	35639605	35639605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:35639605G>A	uc002nye.1	+	2	124	c.40G>A	c.(40-42)GAA>AAA	p.E14K	FXYD7_uc010xsp.1_5'UTR|FXYD7_uc002nyf.1_Missense_Mutation_p.E14K	NM_022006	NP_071289	P58549	FXYD7_HUMAN	FXYD domain-containing ion transport regulator	14						integral to membrane	ion channel activity				0	all_lung(56;7.56e-09)|Lung NSC(56;1.1e-08)|Esophageal squamous(110;0.162)		Epithelial(14;2.32e-21)|OV - Ovarian serous cystadenocarcinoma(14;3.17e-20)|all cancers(14;2.43e-18)|LUSC - Lung squamous cell carcinoma(66;0.0849)			AGCTCCTGAGGAACCTGACCC	0.393													4	92					0	0	1	0	0
FXYD7	53822	broad.mit.edu	37	19	35642569	35642569	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:35642569C>T	uc002nye.1	+	5	297	c.213C>T	c.(211-213)CCC>CCT	p.P71P	FXYD7_uc002nyf.1_Silent_p.P105P	NM_022006	NP_071289	P58549	FXYD7_HUMAN	FXYD domain-containing ion transport regulator	71						integral to membrane	ion channel activity				0	all_lung(56;7.56e-09)|Lung NSC(56;1.1e-08)|Esophageal squamous(110;0.162)		Epithelial(14;2.32e-21)|OV - Ovarian serous cystadenocarcinoma(14;3.17e-20)|all cancers(14;2.43e-18)|LUSC - Lung squamous cell carcinoma(66;0.0849)			CTGAGCTTCCCTCTTCAGGTG	0.527													7	61					0	0	1	0	0
USF2	7392	broad.mit.edu	37	19	35761365	35761365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:35761365C>T	uc002nyq.1	+	5	554	c.445C>T	c.(445-447)CCC>TCC	p.P149S	USF2_uc010xss.1_Missense_Mutation_p.P149S|USF2_uc002nyr.1_Missense_Mutation_p.P82S|USF2_uc002nys.1_5'UTR|USF2_uc002nyt.1_Intron|USF2_uc002nyu.1_5'UTR|USF2_uc002nyv.1_5'UTR	NM_003367	NP_003358	Q15853	USF2_HUMAN	upstream stimulatory factor 2 isoform 1	149					lipid homeostasis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter by glucose	nucleus	bHLH transcription factor binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity				0	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)		Epithelial(14;7.4e-20)|OV - Ovarian serous cystadenocarcinoma(14;6.47e-19)|all cancers(14;4.17e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			GATCCAAAATCCCTTCAGCAA	0.587													7	63					0	0	1	0	0
MAG	4099	broad.mit.edu	37	19	35801017	35801017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:35801017G>A	uc002nyy.1	+	8	1621	c.1472G>A	c.(1471-1473)AGG>AAG	p.R491K	MAG_uc002nyx.1_Missense_Mutation_p.R491K|MAG_uc010eds.1_Missense_Mutation_p.R466K|MAG_uc002nyz.1_Missense_Mutation_p.R491K	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	491	Ig-like C2-type 4.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			TGCACCGCGAGGAACCTCTAT	0.697													6	62					0	0	1	0	0
CD22	933	broad.mit.edu	37	19	35832029	35832029	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:35832029C>T	uc010edt.2	+	7	1572	c.1495C>T	c.(1495-1497)CTG>TTG	p.L499L	CD22_uc010xst.1_Silent_p.L327L|CD22_uc010edu.2_Silent_p.L411L|CD22_uc010edv.2_Silent_p.L499L|CD22_uc002nzb.3_Silent_p.L322L|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	499	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	CCCTGTCGCCCTGAATGTCCA	0.622													16	78					0	0	1	0	0
CD22	933	broad.mit.edu	37	19	35832778	35832778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:35832778G>A	uc010edt.2	+	9	2022	c.1945G>A	c.(1945-1947)GTG>ATG	p.V649M	CD22_uc010xst.1_Missense_Mutation_p.V477M|CD22_uc010edu.2_Missense_Mutation_p.V561M|CD22_uc010edv.2_Missense_Mutation_p.V649M|CD22_uc002nzb.3_Missense_Mutation_p.V472M|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	649	Extracellular (Potential).|Ig-like C2-type 6.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	ATTGGAGCCGGTGAAGGTCCA	0.607													4	54					0	0	1	0	0
DMKN	93099	broad.mit.edu	37	19	36001154	36001155	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:36001154_36001155CC>TT	uc002nzm.3	-	6	1102	c.919_splice	c.e6-1	p.G307_splice	DMKN_uc002nzj.2_5'UTR|DMKN_uc002nzk.3_Splice_Site|DMKN_uc002nzl.3_Splice_Site_p.G20_splice|DMKN_uc002nzo.3_Splice_Site_p.G246_splice|DMKN_uc002nzn.3_Splice_Site_p.G246_splice|DMKN_uc002nzw.2_Splice_Site|DMKN_uc002nzr.2_Splice_Site|DMKN_uc002nzp.2_Splice_Site|DMKN_uc002nzq.2_Splice_Site|DMKN_uc002nzt.2_Splice_Site|DMKN_uc002nzs.2_Splice_Site|DMKN_uc002nzu.2_Splice_Site|DMKN_uc002nzv.2_Splice_Site|DMKN_uc010xsv.1_Splice_Site|DMKN_uc010xsw.1_Splice_Site_p.G20_splice|DMKN_uc002nzx.3_Splice_Site|DMKN_uc002nzy.3_Splice_Site|DMKN_uc002nzz.2_Splice_Site|DMKN_uc002oac.3_Splice_Site_p.G307_splice|DMKN_uc010eeb.2_Splice_Site_p.G307_splice|DMKN_uc002oaa.3_Splice_Site_p.G307_splice|DMKN_uc002oab.3_Splice_Site_p.G307_splice	NM_033317	NP_201574	Q6E0U4	DMKN_HUMAN	dermokine isoform 2 precursor							extracellular region				large_intestine(1)|ovary(1)|skin(1)	3	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			GTGCTGGATCCCTGCAGGGGAA	0.574											OREG0025431	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	9					0	0	1	0	0
SBSN	374897	broad.mit.edu	37	19	36017662	36017662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:36017662C>T	uc002oae.1	-	2	563	c.493G>A	c.(493-495)GAA>AAA	p.E165K	SBSN_uc002oad.1_Missense_Mutation_p.E508K	NM_198538	NP_940940	Q6UWP8	SBSN_HUMAN	suprabasin isoform 2 precursor	165	Ala/Gly/His-rich.					extracellular region				ovary(1)	1	all_lung(56;1.62e-08)|Lung NSC(56;2.47e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			TTCTCCACTTCCTTTCCAGCC	0.597													7	86					0	0	1	0	0
TMEM147	10430	broad.mit.edu	37	19	36038232	36038232	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:36038232C>T	uc002oaj.1	+	7	655	c.558C>T	c.(556-558)TTC>TTT	p.F186F	uc010eec.1_5'Flank|uc002oag.2_5'Flank|TMEM147_uc002oai.1_Silent_p.F137F|TMEM147_uc002oak.1_Silent_p.F141F	NM_032635	NP_116024	Q9BVK8	TM147_HUMAN	transmembrane protein 147	186	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	protein binding				0	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			GCAGGACCTTCGTCCACCTCT	0.572													7	71					0	0	1	0	0
HAUS5	23354	broad.mit.edu	37	19	36110382	36110382	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:36110382C>A	uc002oam.1	+	14	1287	c.1236C>A	c.(1234-1236)ACC>ACA	p.T412T		NM_015302	NP_056117	O94927	HAUS5_HUMAN	HAUS augmin-like complex, subunit 5	412					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle					0						CCAGCAAGACCCGCCTGTGCC	0.632													4	26					3.59834e-05	3.63958e-05	1	1	0
MLL4	9757	broad.mit.edu	37	19	36223347	36223347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:36223347C>T	uc010eei.2	+	29	5897	c.5897C>T	c.(5896-5898)TCT>TTT	p.S1966F		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1966	Poly-Pro.				chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCGGCCCCATCTCCACCACCC	0.657													5	22					0	0	1	0	0
PRODH2	58510	broad.mit.edu	37	19	36297436	36297436	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:36297436T>C	uc002obx.1	-	8	1143	c.1125A>G	c.(1123-1125)GGA>GGG	p.G375G		NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	375					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCAGCTTCACTCCGAAGGCCA	0.627													9	97					0	0	1	0	0
PRODH2	58510	broad.mit.edu	37	19	36297438	36297438	+	Missense_Mutation	SNP	C	T	T	rs148473605		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:36297438C>T	uc002obx.1	-	8	1141	c.1123G>A	c.(1123-1125)GGA>AGA	p.G375R		NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	375					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGCTTCACTCCGAAGGCCAGG	0.627													9	98					0	0	1	0	0
PRODH2	58510	broad.mit.edu	37	19	36303284	36303284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:36303284G>A	uc002obx.1	-	3	595	c.577C>T	c.(577-579)CCG>TCG	p.P193S		NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	193					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GCAGAGTCCGGCTCCTCCTCA	0.662													5	81					0	0	1	0	0
NPHS1	4868	broad.mit.edu	37	19	36321760	36321760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:36321760C>T	uc002oby.2	-	28	3580	c.3580G>A	c.(3580-3582)GAT>AAT	p.D1194N		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	1194	Binds to NPHS2.|Cytoplasmic (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGCACTTCATCGTAGAGGGGT	0.478													12	90					0	0	1	0	0
HCST	10870	broad.mit.edu	37	19	36393501	36393501	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:36393501C>T	uc002ocl.1	+	1	120	c.6C>T	c.(4-6)ATC>ATT	p.I2I	NFKBID_uc002oci.1_5'Flank|NFKBID_uc002ocj.1_5'Flank|HCST_uc002ock.1_Silent_p.I2I	NM_014266	NP_055081	Q9UBK5	HCST_HUMAN	hematopoietic cell signal transducer isoform 1	2					regulation of immune response	integral to membrane|plasma membrane					0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCACCATGATCCATCTGGGTC	0.572													28	241					0	0	1	0	0
ZNF382	84911	broad.mit.edu	37	19	37101641	37101641	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:37101641C>T	uc002oek.2	+	4	342	c.229C>T	c.(229-231)CTA>TTA	p.L77L	ZNF382_uc010efa.2_Silent_p.L28L|ZNF382_uc010efb.2_Silent_p.L76L|ZNF382_uc002oel.2_Silent_p.L77L	NM_032825	NP_116214	Q96SR6	ZN382_HUMAN	zinc finger protein 382	77	Mediates interaction with TRIM28 (By similarity).|KRAB.|Represses transcription (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			TTACAGCTACCTAGGTGAGTC	0.348													3	25					0	0	1	0	0
ZNF585A	199704	broad.mit.edu	37	19	37643417	37643417	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:37643417C>T	uc002ofo.1	-	5	1615	c.1384G>A	c.(1384-1386)GGA>AGA	p.G462R	ZNF585A_uc002ofm.1_Missense_Mutation_p.G407R|ZNF585A_uc002ofn.1_Missense_Mutation_p.G407R	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	462					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GGCTTTTCTCCTGTGTGAATT	0.383													11	79					0	0	1	0	0
ZNF585A	199704	broad.mit.edu	37	19	37644011	37644011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:37644011G>A	uc002ofo.1	-	5	1021	c.790C>T	c.(790-792)CAT>TAT	p.H264Y	ZNF585A_uc002ofm.1_Missense_Mutation_p.H209Y|ZNF585A_uc002ofn.1_Missense_Mutation_p.H209Y	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	264	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCGCCTGTATGGATTTTCTGA	0.428													21	129					0	0	1	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677182	37677182	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:37677182G>A	uc002ofq.2	-	5	1511	c.1257C>T	c.(1255-1257)TTC>TTT	p.F419F	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Silent_p.F233F	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	419	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CCTTCCGGATGAAGGCCAGTC	0.413													5	51					0	0	1	0	0
ZNF527	84503	broad.mit.edu	37	19	37879562	37879562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:37879562C>T	uc010efk.1	+	5	722	c.611C>T	c.(610-612)TCA>TTA	p.S204L	ZNF527_uc002ogf.3_Missense_Mutation_p.S172L|ZNF527_uc010xtq.1_RNA	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	204					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CCCCAAAATTCAGTCATAATT	0.323													9	35					0	0	1	0	0
ZNF793	390927	broad.mit.edu	37	19	38028151	38028151	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38028151C>T	uc010efm.2	+	8	1033	c.591C>T	c.(589-591)TTC>TTT	p.F197F	ZNF793_uc010xts.1_Silent_p.F197F|ZNF793_uc010efo.2_Intron	NM_001013659	NP_001013681	Q6ZN11	ZN793_HUMAN	zinc finger protein 793	197					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGAAAGCTTTCACCCAGAACC	0.458													4	25					0	0	1	0	0
ZNF607	84775	broad.mit.edu	37	19	38190151	38190151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38190151G>A	uc002ohc.1	-	5	1477	c.881C>T	c.(880-882)TCC>TTC	p.S294F	ZNF607_uc002ohb.1_Missense_Mutation_p.S293F	NM_032689	NP_116078	Q96SK3	ZN607_HUMAN	zinc finger protein 607	294	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)			CACAAGGTGGGAAAACTGACG	0.423													8	50					0	0	1	0	0
ZNF573	126231	broad.mit.edu	37	19	38231045	38231045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38231045C>T	uc002ohe.2	-	4	368	c.346G>A	c.(346-348)GAA>AAA	p.E116K	ZNF573_uc010efs.2_Missense_Mutation_p.E29K|ZNF573_uc002ohd.2_Missense_Mutation_p.E114K|ZNF573_uc002ohf.2_Missense_Mutation_p.E58K|ZNF573_uc002ohg.2_Missense_Mutation_p.E28K	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	96					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			ATATCTGTTTCATAAGTGGGT	0.313													4	47					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38573729	38573729	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38573729C>T	uc002ohk.2	+	3	2033	c.1524C>T	c.(1522-1524)TTC>TTT	p.F508F		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	508					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			AGGATTACTTCGTGGGCAAAG	0.552													6	52					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38621191	38621191	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38621191C>T	uc002ohk.2	+	10	3431	c.2922C>T	c.(2920-2922)CTC>CTT	p.L974L		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	974	PDZ.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GGAACGGGCTCGGGCAGCTGG	0.667													7	82					0	0	1	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38621203	38621203	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38621203C>T	uc002ohk.2	+	10	3443	c.2934C>T	c.(2932-2934)GGC>GGT	p.G978G		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	978	PDZ.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GGCAGCTGGGCTTCCACGTGA	0.657													18	82					0	0	1	0	0
YIF1B	90522	broad.mit.edu	37	19	38798389	38798389	+	Silent	SNP	G	A	A	rs143345887	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38798389G>A	uc002ohz.2	-	6	592	c.543C>T	c.(541-543)TTC>TTT	p.F181F	YIF1B_uc002ohw.2_Silent_p.F150F|YIF1B_uc002ohx.2_Silent_p.F166F|YIF1B_uc010xtx.1_Silent_p.F164F|YIF1B_uc010xty.1_Silent_p.F150F|YIF1B_uc002oia.2_Silent_p.F178F|YIF1B_uc002ohy.2_Silent_p.F178F|YIF1B_uc002oib.2_Silent_p.F178F	NM_001039672	NP_001034761	Q5BJH7	YIF1B_HUMAN	Yip1 interacting factor homolog B isoform 5	181	Extracellular (Potential).					integral to membrane					0	all_cancers(60;1.07e-06)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GGTCTGGGGAGAACCTGCAGG	0.507													4	43					0	0	1	0	0
KCNK6	9424	broad.mit.edu	37	19	38817556	38817556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38817556G>A	uc002oic.2	+	2	756	c.646G>A	c.(646-648)GGC>AGC	p.G216S	KCNK6_uc002oid.2_Missense_Mutation_p.G82S	NM_004823	NP_004814	Q9Y257	KCNK6_HUMAN	potassium channel, subfamily K, member 6	216						voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)	1	all_cancers(60;5.83e-07)		Lung(45;0.00047)|LUSC - Lung squamous cell carcinoma(53;0.000613)		Ibutilide(DB00308)|Quinidine(DB00908)	GTCCACCATCGGCCTGGGCGA	0.627													34	151					0	0	1	0	0
RASGRP4	115727	broad.mit.edu	37	19	38903606	38903606	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38903606G>A	uc002oir.2	-	12	1714	c.1500C>T	c.(1498-1500)TTC>TTT	p.F500F	RASGRP4_uc010efz.1_RNA|RASGRP4_uc010ega.1_RNA|RASGRP4_uc010xua.1_Silent_p.F431F|RASGRP4_uc010xub.1_Silent_p.F466F|RASGRP4_uc010xuc.1_Silent_p.F408F|RASGRP4_uc010xud.1_Silent_p.F403F|RASGRP4_uc010xue.1_Silent_p.F311F|RASGRP4_uc010egb.2_Silent_p.F486F	NM_170604	NP_733749	Q8TDF6	GRP4_HUMAN	RAS guanyl releasing protein 4 isoform a	500	EF-hand.				activation of phospholipase C activity|cell growth|cell proliferation|myeloid cell differentiation|positive regulation of Ras protein signal transduction|regulation of G-protein coupled receptor protein signaling pathway|response to extracellular stimulus|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|membrane fraction|plasma membrane|soluble fraction	diacylglycerol binding|GTP-dependent protein binding|metal ion binding|Ras guanyl-nucleotide exchange factor activity			pancreas(1)|lung(1)|skin(1)	3	all_cancers(60;4.21e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CATGGCAGGCGAAGGGAAAAT	0.567													6	74					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38924499	38924499	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38924499C>T	uc002oit.2	+	1	160	c.30C>T	c.(28-30)GTC>GTT	p.V10V	RYR1_uc002oiu.2_Silent_p.V10V	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	10	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AAGACGAGGTCCAGTTCCTGC	0.647													6	146					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38985036	38985036	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38985036C>T	uc002oit.2	+	39	6449	c.6319C>T	c.(6319-6321)CAA>TAA	p.Q2107*	RYR1_uc002oiu.2_Nonsense_Mutation_p.Q2107*|RYR1_uc002oiv.1_5'Flank	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2107	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCGCTGGGCCCAAGAGGACTT	0.672													9	29					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38991518	38991518	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38991518C>T	uc002oit.2	+	47	7632	c.7502C>T	c.(7501-7503)TCC>TTC	p.S2501F	RYR1_uc002oiu.2_Missense_Mutation_p.S2501F|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2501	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CACAAGGCGTCCATGGTGCTC	0.637													5	41					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38993309	38993309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38993309C>T	uc002oit.2	+	48	7907	c.7777C>T	c.(7777-7779)CGT>TGT	p.R2593C	RYR1_uc002oiu.2_Missense_Mutation_p.R2593C|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2593	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GTCTCGGGGTCGTTCGCTCAC	0.562													7	36					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38993313	38993313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38993313C>T	uc002oit.2	+	48	7911	c.7781C>T	c.(7780-7782)TCG>TTG	p.S2594L	RYR1_uc002oiu.2_Missense_Mutation_p.S2594L|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2594	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CGGGGTCGTTCGCTCACCAAG	0.542													8	37					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38996016	38996016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:38996016C>T	uc002oit.2	+	53	8508	c.8378C>T	c.(8377-8379)CCC>CTC	p.P2793L	RYR1_uc002oiu.2_Missense_Mutation_p.P2793L|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2793	5.|Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	ATGCTGAGGCCCTACAAGACC	0.552													3	19					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39003027	39003027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:39003027G>A	uc002oit.2	+	63	9506	c.9376G>A	c.(9376-9378)GGC>AGC	p.G3126S	RYR1_uc002oiu.2_Missense_Mutation_p.G3126S|RYR1_uc002oiv.1_Missense_Mutation_p.G46S|RYR1_uc010xuf.1_Missense_Mutation_p.G46S	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3126	Helical; Name=M'; (Potential).				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GAAAGGCGTGGGCCAGAACCT	0.622													4	47					0	0	1	0	0
MAP4K1	11184	broad.mit.edu	37	19	39090569	39090569	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:39090569G>A	uc002oix.1	-	22	1773	c.1665C>T	c.(1663-1665)CTC>CTT	p.L555L	MAP4K1_uc002oiw.1_Silent_p.L142L|MAP4K1_uc002oiy.1_Silent_p.L555L|MAP4K1_uc010xug.1_Intron	NM_007181	NP_009112	Q92918	M4K1_HUMAN	mitogen-activated protein kinase kinase kinase	555	CNH.				activation of JUN kinase activity|peptidyl-serine phosphorylation		ATP binding|MAP kinase kinase kinase kinase activity|protein binding|small GTPase regulator activity			skin(4)|lung(3)|ovary(1)	8	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CCAGACCTGAGAGAGACATGA	0.498													17	120					0	0	1	0	0
LGALS4	3960	broad.mit.edu	37	19	39299543	39299543	+	Silent	SNP	G	A	A	rs145088175	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:39299543G>A	uc002ojg.2	-	3	394	c.180C>T	c.(178-180)GTC>GTT	p.V60V	LGALS4_uc010xuj.1_Silent_p.V60V	NM_006149	NP_006140	P56470	LEG4_HUMAN	galectin-4	60	Galectin 1.				cell adhesion	cytosol|plasma membrane	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;1.02e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			AGTGGAAGGCGACGTCTGAGC	0.632													7	20					0	0	1	0	0
HNRNPL	3191	broad.mit.edu	37	19	39338017	39338017	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:39338017G>A	uc010xul.1	-	2	336	c.325C>T	c.(325-327)CTG>TTG	p.L109L	HNRNPL_uc010xum.1_5'UTR	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	109	RRM 1.				nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			CCGTCAATCAGGCCCCTGATG	0.522													4	67					0	0	1	0	0
SARS2	54938	broad.mit.edu	37	19	39409116	39409116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:39409116G>A	uc002oka.2	-	9	1022	c.862C>T	c.(862-864)CCT>TCT	p.P288S	SARS2_uc002ojz.2_Missense_Mutation_p.P98S|SARS2_uc010xup.1_Missense_Mutation_p.P290S|SARS2_uc002okb.2_Missense_Mutation_p.P288S|SARS2_uc010xuq.1_Missense_Mutation_p.P288S|SARS2_uc010xur.1_RNA	NM_017827	NP_060297	Q9NP81	SYSM_HUMAN	seryl-tRNA synthetase 2 isoform b precursor	288					seryl-tRNA aminoacylation	mitochondrial matrix	ATP binding|protein binding|serine-tRNA ligase activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(60;2.74e-06)|all_epithelial(25;4.36e-06)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			AAGCGGGCAGGGTCGATGTTG	0.592													5	70					0	0	1	0	0
PAPL	390928	broad.mit.edu	37	19	39589264	39589264	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:39589264C>T	uc002oki.2	+	3	562	c.288C>T	c.(286-288)GTC>GTT	p.V96V	PAPL_uc010egl.2_Silent_p.V96V	NM_001004318	NP_001004318	Q6ZNF0	PAPL_HUMAN	iron/zinc purple acid phosphatase-like protein	96						extracellular region	acid phosphatase activity|metal ion binding				0						TACACCGAGTCACGCTTCGCA	0.647													5	52					0	0	1	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39915501	39915501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:39915501C>T	uc010xuz.1	+	19	4053	c.3728C>T	c.(3727-3729)TCC>TTC	p.S1243F	PLEKHG2_uc010xuy.1_Missense_Mutation_p.S1184F|PLEKHG2_uc002olj.2_Intron|PLEKHG2_uc010xva.1_Missense_Mutation_p.S1021F	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	1243					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CCAGGAGGCTCCTTAGCCTCT	0.587													20	164					0	0	1	0	0
TIMM50	92609	broad.mit.edu	37	19	39978708	39978708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:39978708C>T	uc002olu.1	+	9	1146	c.1013C>T	c.(1012-1014)TCA>TTA	p.S338L	TIMM50_uc002olt.1_RNA|TIMM50_uc002olv.1_Missense_Mutation_p.S37L	NM_001001563	NP_001001563	Q3ZCQ8	TIM50_HUMAN	translocase of inner mitochondrial membrane 50	235	Mitochondrial intermembrane (Potential).|FCP1 homology.				mitochondrial membrane organization|protein transport|release of cytochrome c from mitochondria|transmembrane transport	integral to membrane|mitochondrial inner membrane presequence translocase complex|nuclear speck	interleukin-2 receptor binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|ribonucleoprotein binding|RNA binding			ovary(1)	1	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CAGGATATTTCATGTCTGAAT	0.522													17	135					0	0	1	0	0
LGALS14	56891	broad.mit.edu	37	19	40197299	40197299	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:40197299G>A	uc002omg.2	+	2	301	c.78G>A	c.(76-78)CCG>CCA	p.P26P	LGALS14_uc002omf.2_Silent_p.P55P	NM_020129	NP_064514	Q8TCE9	PPL13_HUMAN	lectin, galactoside-binding, soluble, 14 isoform	26	Galectin.					nucleus	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;4.39e-06)|all_lung(34;6.76e-08)|Lung NSC(34;7.98e-08)|Ovarian(47;0.06)	Myeloproliferative disorder(2;0.0741)	Epithelial(26;1.08e-24)|OV - Ovarian serous cystadenocarcinoma(5;1.92e-24)|all cancers(26;4.12e-22)			CAGGGACACCGATCCTCACTT	0.493													11	39					0	0	1	0	0
DYRK1B	9149	broad.mit.edu	37	19	40317395	40317395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:40317395G>A	uc002omj.2	-	9	1608	c.1328C>T	c.(1327-1329)CCG>CTG	p.P443L	DYRK1B_uc002omi.2_Missense_Mutation_p.P415L|DYRK1B_uc002omk.2_Missense_Mutation_p.P403L	NM_004714	NP_004705	Q9Y463	DYR1B_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	443					positive regulation of transcription, DNA-dependent	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|transcription coactivator activity			ovary(4)|stomach(1)|central_nervous_system(1)|skin(1)	7	all_cancers(60;5.79e-06)|all_lung(34;5.2e-08)|Lung NSC(34;6.14e-08)|Ovarian(47;0.06)		Epithelial(26;5.74e-25)|OV - Ovarian serous cystadenocarcinoma(5;3.13e-24)|all cancers(26;8.59e-23)			GCTGCCTGCCGGGCCCGTGTT	0.721													3	12					0	0	1	0	0
DYRK1B	9149	broad.mit.edu	37	19	40319018	40319018	+	Silent	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:40319018G>T	uc002omj.2	-	6	1006	c.726C>A	c.(724-726)CCC>CCA	p.P242P	DYRK1B_uc002omi.2_Silent_p.P242P|DYRK1B_uc002omk.2_Silent_p.P242P	NM_004714	NP_004705	Q9Y463	DYR1B_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	242	Protein kinase.				positive regulation of transcription, DNA-dependent	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|transcription coactivator activity			ovary(4)|stomach(1)|central_nervous_system(1)|skin(1)	7	all_cancers(60;5.79e-06)|all_lung(34;5.2e-08)|Lung NSC(34;6.14e-08)|Ovarian(47;0.06)		Epithelial(26;5.74e-25)|OV - Ovarian serous cystadenocarcinoma(5;3.13e-24)|all cancers(26;8.59e-23)			AGATGTTTTCGGGCTTGAGGT	0.627													3	31					0.115264	0.115996	1	1	0
FBL	2091	broad.mit.edu	37	19	40328403	40328403	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:40328403G>A	uc002omn.2	-	6	744	c.630C>T	c.(628-630)ATC>ATT	p.I210I	FBL_uc002omm.1_Silent_p.I124I|FBL_uc002omo.2_Silent_p.I209I	NM_001436	NP_001427	P22087	FBRL_HUMAN	fibrillarin	210					rRNA processing|tRNA processing	box C/D snoRNP complex|Cajal body	methyltransferase activity|protein binding|RNA binding			ovary(1)	1	all_cancers(60;5.79e-06)|all_lung(34;5.2e-08)|Lung NSC(34;6.14e-08)|Ovarian(47;0.06)	Renal(1328;0.000518)|Hepatocellular(1079;0.0893)	Epithelial(26;5.74e-25)|OV - Ovarian serous cystadenocarcinoma(5;3.13e-24)|all cancers(26;8.59e-23)	GBM - Glioblastoma multiforme(1328;0.000826)|STAD - Stomach adenocarcinoma(1328;0.138)		TCACAGGAATGATGTTGGTCC	0.532													9	85					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40368576	40368576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:40368576C>T	uc002omp.3	-	28	12780	c.12772G>A	c.(12772-12774)GAA>AAA	p.E4258K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4258	VWFD 10.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CCCCGACATTCGTCCCAACAC	0.647													10	68					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40408554	40408554	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:40408554G>A	uc002omp.3	-	8	4293	c.4285C>T	c.(4285-4287)CTG>TTG	p.L1429L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1429	VWFD 3.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GTGGGCGGCAGGCAGGGAGAG	0.627													5	66					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40408594	40408594	+	Silent	SNP	G	A	A	rs141092836		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:40408594G>A	uc002omp.3	-	8	4253	c.4245C>T	c.(4243-4245)TTC>TTT	p.F1415F		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1415	VWFD 3.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			AGGAGTTGCCGAACTCATTGG	0.632													10	74					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40424151	40424151	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:40424151G>A	uc002omp.3	-	4	2060	c.2052C>T	c.(2050-2052)TTC>TTT	p.F684F		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	684	VWFD 1.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGCAGACAGCGAAGGGGCCAT	0.642													33	199					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40433814	40433814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:40433814G>A	uc002omp.3	-	2	463	c.455C>T	c.(454-456)TCA>TTA	p.S152L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	152	IgGFc-binding.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			ATTCCTGGCTGAGGTGCCGGG	0.597													6	51					0	0	1	0	0
ZNF780B	163131	broad.mit.edu	37	19	40540947	40540947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:40540947G>A	uc002omu.2	-	5	1884	c.1819C>T	c.(1819-1821)CAT>TAT	p.H607Y	ZNF780B_uc002omv.2_Missense_Mutation_p.H459Y	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	607	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TCACCAGTATGAAATTTCTGA	0.423													5	46					0	0	1	0	0
AKT2	208	broad.mit.edu	37	19	40739804	40739804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:40739804G>A	uc002onf.2	-	14	1683	c.1421C>T	c.(1420-1422)TCC>TTC	p.S474F	AKT2_uc010egs.2_Missense_Mutation_p.S431F|AKT2_uc010egt.2_Missense_Mutation_p.S412F|AKT2_uc010xvj.1_Missense_Mutation_p.S412F|AKT2_uc002one.2_Missense_Mutation_p.S370F	NM_001626	NP_001617	P31751	AKT2_HUMAN	AKT2 kinase	474	AGC-kinase C-terminal.			S->D: Constitutively active; when associated with E-309.|S->A: Impairs interaction with TTC3; when associated with A-309.	insulin receptor signaling pathway|negative regulation of plasma membrane long-chain fatty acid transport|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2			Lung(22;0.000499)			GGCCGAGTAGGAGAACTGGGG	0.622			A		ovarian|pancreatic 								5	39					0	0	1	0	0
AKT2	208	broad.mit.edu	37	19	40746009	40746009	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:40746009G>A	uc002onf.2	-	7	844	c.582C>T	c.(580-582)GTC>GTT	p.V194V	AKT2_uc010egs.2_Silent_p.V194V|AKT2_uc010egt.2_Silent_p.V132V|AKT2_uc010xvj.1_Silent_p.V132V|AKT2_uc010egu.1_Silent_p.V132V|AKT2_uc010xvk.1_Silent_p.V194V|AKT2_uc002one.2_Silent_p.V90V	NM_001626	NP_001617	P31751	AKT2_HUMAN	AKT2 kinase	194	Protein kinase.				insulin receptor signaling pathway|negative regulation of plasma membrane long-chain fatty acid transport|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2			Lung(22;0.000499)			CTGTGTGAGCGACTTCATCCT	0.622			A		ovarian|pancreatic 								40	249					0	0	1	0	0
C19orf47	126526	broad.mit.edu	37	19	40842102	40842102	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:40842102T>A	uc002oni.3	-	4	249	c.248A>T	c.(247-249)AAT>ATT	p.N83I	C19orf47_uc002ong.2_5'UTR|C19orf47_uc002onh.2_Missense_Mutation_p.N16I	NM_178830	NP_849152	Q8N9M1	CS047_HUMAN	hypothetical protein LOC126526	83										ovary(1)|skin(1)	2			Lung(22;0.000636)			TATCTCCTTATTGAGATCCAG	0.597													8	52					0	0	1	0	0
PLD3	23646	broad.mit.edu	37	19	40883698	40883698	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:40883698C>T	uc002onm.3	+	12	1589	c.1191C>T	c.(1189-1191)CTC>CTT	p.L397L	PLD3_uc002onj.3_Silent_p.L397L|PLD3_uc002onk.3_Silent_p.L397L|PLD3_uc002onl.3_Silent_p.L397L|PLD3_uc002onn.2_Silent_p.L397L	NM_001031696	NP_001026866	Q8IV08	PLD3_HUMAN	phospholipase D3	397	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum membrane|integral to membrane	NAPE-specific phospholipase D activity|phospholipase D activity|protein binding			skin(2)|ovary(1)	3			Lung(22;0.000636)|LUSC - Lung squamous cell carcinoma(20;0.00248)			CTCAGAAACTCTTTGTGGTCC	0.602													4	34					0	0	1	0	0
SPTBN4	57731	broad.mit.edu	37	19	41056227	41056227	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:41056227G>A	uc002ony.2	+	22	4754	c.4668G>A	c.(4666-4668)AAG>AAA	p.K1556K	SPTBN4_uc002onx.2_Silent_p.K1556K|SPTBN4_uc002onz.2_Silent_p.K1556K|SPTBN4_uc010egx.2_Silent_p.K299K|SPTBN4_uc010egy.1_Silent_p.K232K|SPTBN4_uc002ooa.2_Silent_p.K232K	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1556	Spectrin 13.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			ACATCAAAAAGAACCAGGTGA	0.403													4	56					0	0	1	0	0
ADCK4	79934	broad.mit.edu	37	19	41220227	41220227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:41220227G>A	uc002oor.2	-	3	480	c.178C>T	c.(178-180)CGC>TGC	p.R60C	ADCK4_uc002ooq.1_Missense_Mutation_p.R60C|ADCK4_uc002oos.2_Missense_Mutation_p.R60C|ITPKC_uc002oot.2_5'Flank	NM_024876	NP_079152	Q96D53	ADCK4_HUMAN	aarF domain containing kinase 4 isoform a	60						integral to membrane	protein serine/threonine kinase activity				0			Lung(22;9.49e-05)|LUSC - Lung squamous cell carcinoma(20;0.000219)			CGTGCCCTGCGAATGTCCTCC	0.602													12	56					0	0	1	0	0
RAB4B	53916	broad.mit.edu	37	19	41285941	41285941	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:41285941C>T	uc002opd.1	+	2	144	c.34C>T	c.(34-36)CTG>TTG	p.L12L	MIA_uc010xvt.1_RNA|RAB4B_uc002opc.1_RNA|RAB4B_uc002ope.1_RNA|EGLN2_uc010ehd.2_5'UTR|RAB4B_uc002opf.1_Silent_p.L38L	NM_016154	NP_057238	P61018	RAB4B_HUMAN	ras-related GTP-binding protein 4b	12					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	intracellular|plasma membrane	GTP binding|GTPase activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			CTTCAAATTCCTGGTGATTGG	0.473													15	80					0	0	1	0	0
RAB4B	53916	broad.mit.edu	37	19	41289884	41289884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:41289884C>T	uc002opd.1	+	5	444	c.334C>T	c.(334-336)CCC>TCC	p.P112S	RAB4B_uc002opc.1_RNA|RAB4B_uc002ope.1_Intron|EGLN2_uc010ehd.2_5'UTR|RAB4B_uc002opf.1_Missense_Mutation_p.P138S	NM_016154	NP_057238	P61018	RAB4B_HUMAN	ras-related GTP-binding protein 4b	112					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	intracellular|plasma membrane	GTP binding|GTPase activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			CCTGGCCAGCCCCAACATCGT	0.622													7	42					0	0	1	0	0
CYP2A6	1548	broad.mit.edu	37	19	41352930	41352930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:41352930C>T	uc002opl.3	-	5	702	c.681G>A	c.(679-681)ATG>ATA	p.M227I	CYP2A6_uc010ehe.1_Missense_Mutation_p.M23I|CYP2A6_uc010ehf.1_RNA	NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	227					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	GCAGGTGTTTCATCACCGAAG	0.557													12	88					0	0	1	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41447273	41447273	+	Missense_Mutation	SNP	G	A	A	rs34110144		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:41447273G>A	uc010ehh.1	+	5	726	c.718G>A	c.(718-720)GAA>AAA	p.E240K	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450, family 2, subfamily B, polypeptide 6;											ovary(1)|skin(1)	2						AAACCTACAGGAAATCAATGC	0.517													5	100					0	0	1	0	0
CYP2B6	1555	broad.mit.edu	37	19	41509910	41509910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:41509910G>A	uc002opr.1	+	2	183	c.176G>A	c.(175-177)CGA>CAA	p.R59Q	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Missense_Mutation_p.R19Q	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	59					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	TGGCAGTTCCGAGAGAAATAT	0.398													6	36					0	0	1	0	0
CYP2B6	1555	broad.mit.edu	37	19	41509945	41509945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:41509945G>A	uc002opr.1	+	2	218	c.211G>A	c.(211-213)GGA>AGA	p.G71R	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Missense_Mutation_p.G31R	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	71					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	GGTACACCTGGGACCGAGGCC	0.502													4	56					0	0	1	0	0
CYP2F1	1572	broad.mit.edu	37	19	41622176	41622176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:41622176G>A	uc002opu.1	+	2	139	c.83G>A	c.(82-84)GGA>GAA	p.G28E	CYP2F1_uc010xvw.1_Intron|CYP2F1_uc010xvv.1_Missense_Mutation_p.G28E|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	28					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						AGAGATAAGGGAAAGCTGCCT	0.562													20	158					0	0	1	0	0
CYP2S1	29785	broad.mit.edu	37	19	41700523	41700523	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:41700523G>A	uc002opw.2	+	2	307	c.252G>A	c.(250-252)CAG>CAA	p.Q84Q	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_5'UTR	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	84					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						TGGTTGGGCAGGAGGCTGTGC	0.612													9	56					0	0	1	0	0
AXL	558	broad.mit.edu	37	19	41749591	41749591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:41749591C>T	uc010ehj.2	+	12	1706	c.1516C>T	c.(1516-1518)CGT>TGT	p.R506C	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Missense_Mutation_p.R506C|AXL_uc010ehk.2_Missense_Mutation_p.R497C	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	506	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						GTCCTACAGTCGTCGGACCAC	0.562													8	104					0	0	1	0	0
CEACAM7	1087	broad.mit.edu	37	19	42187819	42187819	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42187819G>A	uc002ori.1	-	3	605	c.603C>T	c.(601-603)CTC>CTT	p.L201L	CEACAM7_uc010ehx.2_Silent_p.L201L|CEACAM7_uc010ehy.1_Intron	NM_006890	NP_008821	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion	201	Ig-like C2-type.					anchored to membrane|integral to membrane|plasma membrane				ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		TGAGTAGAACGAGGGTCCTGT	0.537													5	87					0	0	1	0	0
CEACAM5	1048	broad.mit.edu	37	19	42231174	42231174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42231174C>T	uc002ork.2	+	9	2168	c.2047C>T	c.(2047-2049)CTC>TTC	p.L683F	CEACAM5_uc002orj.1_Missense_Mutation_p.L682F|CEACAM5_uc002orl.2_Missense_Mutation_p.L683F	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	683						anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		TTCTCCTGGTCTCTCAGCTGG	0.498													24	399					0	0	1	0	0
CEACAM3	1084	broad.mit.edu	37	19	42301836	42301836	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42301836C>T	uc002orn.1	+	2	456	c.380C>T	c.(379-381)TCA>TTA	p.S127L	CEACAM3_uc010eia.1_Missense_Mutation_p.S127L|CEACAM3_uc002oro.1_RNA	NM_001815	NP_001806	P40198	CEAM3_HUMAN	carcinoembryonic antigen-related cell adhesion	127	Ig-like V-type.|Extracellular (Potential).					integral to membrane				skin(1)	1						GTCATAAAGTCAGATCTTGTG	0.453													26	175					0	0	1	0	0
LYPD4	147719	broad.mit.edu	37	19	42342118	42342118	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42342118C>T	uc002orp.1	-	4	1413	c.429G>A	c.(427-429)CCG>CCA	p.P143P	LYPD4_uc002orq.1_Silent_p.P108P	NM_173506	NP_775777	Q6UWN0	LYPD4_HUMAN	LY6/PLAUR domain containing 4 precursor	143	UPAR/Ly6.					anchored to membrane|plasma membrane				ovary(1)	1						CCACACAGGTCGGGCAGCTAC	0.493													5	58					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42485724	42485724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42485724G>A	uc002osg.2	-	11	1521	c.1367C>T	c.(1366-1368)TCC>TTC	p.S456F	ATP1A3_uc010xwf.1_Missense_Mutation_p.S467F|ATP1A3_uc010xwg.1_Missense_Mutation_p.S426F|ATP1A3_uc010xwh.1_Missense_Mutation_p.S469F|ATP1A3_uc002osh.2_Missense_Mutation_p.S456F	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	456	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						CAGCTTCACGGAGCCAGAGGA	0.552													9	44					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42489190	42489190	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42489190G>A	uc002osg.2	-	8	1027	c.873C>T	c.(871-873)TTC>TTT	p.F291F	ATP1A3_uc010xwf.1_Silent_p.F302F|ATP1A3_uc010xwg.1_Silent_p.F261F|ATP1A3_uc010xwh.1_Silent_p.F304F|ATP1A3_uc002osh.2_Silent_p.F291F	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	291	Helical; (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						AGACACCCAGGAAGACAGCCA	0.587													3	16					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42489220	42489220	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42489220G>A	uc002osg.2	-	8	997	c.843C>T	c.(841-843)TTC>TTT	p.F281F	ATP1A3_uc010xwf.1_Silent_p.F292F|ATP1A3_uc010xwg.1_Silent_p.F251F|ATP1A3_uc010xwh.1_Silent_p.F294F|ATP1A3_uc002osh.2_Silent_p.F281F	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	281	Helical; (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						TGAGCTGGATGAAGTGCTCAA	0.602													6	19					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42489539	42489539	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42489539G>A	uc002osg.2	-	7	797	c.643C>T	c.(643-645)CAG>TAG	p.Q215*	ATP1A3_uc010xwf.1_Nonsense_Mutation_p.Q226*|ATP1A3_uc010xwg.1_Nonsense_Mutation_p.Q185*|ATP1A3_uc010xwh.1_Nonsense_Mutation_p.Q228*|ATP1A3_uc002osh.2_Nonsense_Mutation_p.Q215*	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	215	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						GAGCGAGTCTGGGGCTCGGAT	0.587													6	66					0	0	1	0	0
ZNF574	64763	broad.mit.edu	37	19	42582801	42582801	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42582801C>A	uc002osm.3	+	2	212	c.43C>A	c.(43-45)CGC>AGC	p.R15S	ZNF574_uc002osk.3_Missense_Mutation_p.R105S	NM_022752	NP_073589	Q6ZN55	ZN574_HUMAN	zinc finger protein 574	15					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.059)				CATTGAGCACCGCTATGTCTG	0.557													4	128					1	1	1	1	0
ZNF574	64763	broad.mit.edu	37	19	42584584	42584584	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42584584G>T	uc002osm.3	+	2	1995	c.1826G>T	c.(1825-1827)TGT>TTT	p.C609F	ZNF574_uc002osk.3_Missense_Mutation_p.C699F	NM_022752	NP_073589	Q6ZN55	ZN574_HUMAN	zinc finger protein 574	609	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.059)				CCCTACAAGTGTCGCGAGTGC	0.647													10	47					4.68919e-08	4.75052e-08	1	1	0
POU2F2	5452	broad.mit.edu	37	19	42600013	42600013	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42600013G>A	uc002osp.2	-	9	799	c.732C>T	c.(730-732)TTC>TTT	p.F244F	POU2F2_uc002osn.2_Silent_p.F228F|POU2F2_uc002oso.2_Silent_p.F17F|POU2F2_uc002osq.2_Silent_p.F228F|POU2F2_uc002osr.1_Silent_p.F244F	NM_002698	NP_002689	P09086	PO2F2_HUMAN	POU domain, class 2, transcription factor 2	244	POU-specific.				humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2		Prostate(69;0.059)				TGAGGGCCTCGAAGCGGGAAA	0.622													10	79					0	0	1	0	0
POU2F2	5452	broad.mit.edu	37	19	42626697	42626697	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42626697C>T	uc002osp.2	-	2	127	c.60G>A	c.(58-60)GAG>GAA	p.E20E	POU2F2_uc002osn.2_Silent_p.E20E|POU2F2_uc002oso.2_5'UTR|POU2F2_uc002osq.2_Silent_p.E20E|POU2F2_uc002osr.1_Silent_p.E20E	NM_002698	NP_002689	P09086	PO2F2_HUMAN	POU domain, class 2, transcription factor 2	20					humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2		Prostate(69;0.059)				GACCTTGCTTCTCGGCCTCCA	0.622													4	33					0	0	1	0	0
DEDD2	162989	broad.mit.edu	37	19	42713960	42713960	+	Missense_Mutation	SNP	G	A	A	rs150206484		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42713960G>A	uc002osu.1	-	4	549	c.481C>T	c.(481-483)CGG>TGG	p.R161W	DEDD2_uc002osv.1_RNA|DEDD2_uc002osw.1_Missense_Mutation_p.R156W|DEDD2_uc002osx.1_Silent_p.V44V|DEDD2_uc002osy.1_Missense_Mutation_p.R161W|DEDD2_uc010eid.2_RNA	NM_133328	NP_579874	Q8WXF8	DEDD2_HUMAN	death effector domain-containing  DNA binding	161	Bipartite nuclear localization signal (Potential).				activation of pro-apoptotic gene products|apoptotic nuclear change|cellular homeostasis|induction of apoptosis via death domain receptors|intracellular signal transduction|negative regulation of transcription, DNA-dependent|RNA processing|rRNA catabolic process|transcription, DNA-dependent	nucleolus	DNA binding|receptor signaling complex scaffold activity				0		Prostate(69;0.0704)				GGCCGGCCCCGACTCCGCCGC	0.667													4	41					0	0	1	0	0
CIC	23152	broad.mit.edu	37	19	42798161	42798161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42798161C>T	uc002otf.1	+	17	4155	c.4115C>T	c.(4114-4116)CCC>CTC	p.P1372L		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	1372					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				GAGGTGCTGCCCTCCCCCACC	0.642			T	DUX4	soft tissue sarcoma								5	97					0	0	1	0	0
PRR19	284338	broad.mit.edu	37	19	42813791	42813791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42813791C>T	uc002oti.2	+	2	433	c.55C>T	c.(55-57)CGT>TGT	p.R19C	PRR19_uc002oth.1_Missense_Mutation_p.R19C|PRR19_uc002otj.2_Missense_Mutation_p.R19C	NM_199285	NP_954979	A6NJB7	PRR19_HUMAN	proline rich 19	19											0		Prostate(69;0.00682)				GAAACCTGGTCGTGTCCGTCG	0.582													14	84					0	0	1	0	0
PRR19	284338	broad.mit.edu	37	19	42813931	42813931	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42813931C>T	uc002oti.2	+	2	573	c.195C>T	c.(193-195)ACC>ACT	p.T65T	PRR19_uc002oth.1_Silent_p.T65T|PRR19_uc002otj.2_Silent_p.T65T	NM_199285	NP_954979	A6NJB7	PRR19_HUMAN	proline rich 19	65											0		Prostate(69;0.00682)				TGGTCATAACCCAGGGCCGGC	0.637													20	130					0	0	1	0	0
MEGF8	1954	broad.mit.edu	37	19	42847676	42847676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:42847676C>T	uc002otl.3	+	9	2196	c.1561C>T	c.(1561-1563)CTT>TTT	p.L521F	MEGF8_uc002otm.3_Missense_Mutation_p.L62F	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	521	Extracellular (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				AGCTGCGGTGCTTGGTGGCAG	0.637													7	57					0	0	1	0	0
CEACAM1	634	broad.mit.edu	37	19	43026158	43026158	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43026158C>T	uc002otv.2	-	3	734	c.621G>A	c.(619-621)AGG>AGA	p.R207R	uc010eif.1_Intron|uc002ott.1_RNA|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc010eii.2_5'Flank|CEACAM1_uc002otw.2_Silent_p.R207R|CEACAM1_uc010eij.2_Silent_p.R207R|CEACAM1_uc002otx.2_Silent_p.R207R|CEACAM1_uc002oty.2_Silent_p.R207R|CEACAM1_uc002otz.2_Silent_p.R207R|CEACAM1_uc010eik.2_Intron|CEACAM1_uc002oua.2_Silent_p.R207R|CEACAM1_uc002oub.2_Silent_p.R207R|CEACAM1_uc002ouc.2_Silent_p.R207R	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	207	Ig-like C2-type 1.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	CTGTGTCATTCCTTGTGACAC	0.522													26	159					0	0	1	0	0
CEACAM1	634	broad.mit.edu	37	19	43026277	43026277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43026277C>T	uc002otv.2	-	3	615	c.502G>A	c.(502-504)GAA>AAA	p.E168K	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc010eii.2_5'Flank|CEACAM1_uc002otw.2_Missense_Mutation_p.E168K|CEACAM1_uc010eij.2_Missense_Mutation_p.E168K|CEACAM1_uc002otx.2_Missense_Mutation_p.E168K|CEACAM1_uc002oty.2_Missense_Mutation_p.E168K|CEACAM1_uc002otz.2_Missense_Mutation_p.E168K|CEACAM1_uc010eik.2_Intron|CEACAM1_uc002oua.2_Missense_Mutation_p.E168K|CEACAM1_uc002oub.2_Missense_Mutation_p.E168K|CEACAM1_uc002ouc.2_Missense_Mutation_p.E168K	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	168	Ig-like C2-type 1.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	GTCTCAGGTTCACAGGTGAAG	0.557													16	180					0	0	1	0	0
CEACAM1	634	broad.mit.edu	37	19	43031210	43031210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43031210C>T	uc002otv.2	-	2	520	c.407G>A	c.(406-408)GGA>GAA	p.G136E	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc002otw.2_Missense_Mutation_p.G136E|CEACAM1_uc010eij.2_Missense_Mutation_p.G136E|CEACAM1_uc002otx.2_Missense_Mutation_p.G136E|CEACAM1_uc002oty.2_Missense_Mutation_p.G136E|CEACAM1_uc002otz.2_Missense_Mutation_p.G136E|CEACAM1_uc010eik.2_Missense_Mutation_p.G136E|CEACAM1_uc002oua.2_Missense_Mutation_p.G136E|CEACAM1_uc002oub.2_Missense_Mutation_p.G136E|CEACAM1_uc002ouc.2_Missense_Mutation_p.G136E	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	136	Ig-like V-type.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	ATGGAACTGTCCAGTTGCTTC	0.498													13	250					0	0	1	0	0
CEACAM1	634	broad.mit.edu	37	19	43031474	43031474	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43031474C>T	uc002otv.2	-	2	256	c.143G>A	c.(142-144)GGG>GAG	p.G48E	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc002otw.2_Missense_Mutation_p.G48E|CEACAM1_uc010eij.2_Missense_Mutation_p.G48E|CEACAM1_uc002otx.2_Missense_Mutation_p.G48E|CEACAM1_uc002oty.2_Missense_Mutation_p.G48E|CEACAM1_uc002otz.2_Missense_Mutation_p.G48E|CEACAM1_uc010eik.2_Missense_Mutation_p.G48E|CEACAM1_uc002oua.2_Missense_Mutation_p.G48E|CEACAM1_uc002oub.2_Missense_Mutation_p.G48E|CEACAM1_uc002ouc.2_Missense_Mutation_p.G48E	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	48	Ig-like V-type.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	AACCTCCTTCCCCTCTGCAAC	0.517													15	116					0	0	1	0	0
PSG3	5671	broad.mit.edu	37	19	43233445	43233445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43233445G>A	uc002oue.2	-	5	1205	c.1073C>T	c.(1072-1074)TCT>TTT	p.S358F	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.S358F|PSG3_uc010eil.2_Missense_Mutation_p.S380F	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	358	Ig-like C2-type 3.			Missing (in Ref. 9).	defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TGGTGGGTTAGAGTCCGCGAA	0.453													15	85					0	0	1	0	0
PSG8	440533	broad.mit.edu	37	19	43269689	43269689	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43269689C>T	uc002ouo.2	-	1	143	c.45G>A	c.(43-45)TGG>TGA	p.W15*	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc002oui.2_5'UTR|PSG8_uc002ouh.2_Nonsense_Mutation_p.W15*|PSG8_uc010ein.2_Nonsense_Mutation_p.W15*|PSG8_uc002ouj.3_Intron|PSG8_uc002ouk.3_Intron|PSG8_uc002oul.3_Intron|PSG8_uc002oum.3_Intron|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Intron	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	15						extracellular region					0		Prostate(69;0.00899)				GGAGCCCCTTCCAGGTGATGC	0.587													6	70					0	0	1	0	0
PSG1	5669	broad.mit.edu	37	19	43383710	43383710	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43383710G>A	uc002ovb.2	-	1	162	c.24C>T	c.(22-24)CCC>CCT	p.P8P	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Silent_p.P8P|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Silent_p.P8P|PSG1_uc010eio.1_Silent_p.P8P|PSG1_uc002oux.1_5'Flank|PSG1_uc002ouy.1_Silent_p.P8P|PSG1_uc002ouz.1_Silent_p.P8P|PSG1_uc002ova.1_Silent_p.P8P|PSG1_uc002ovc.2_Silent_p.P8P|PSG1_uc002ovd.1_Silent_p.P8P	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	8					female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				GCTGTGTGCAGGGAGGGGCTG	0.572													22	98					0	0	1	0	0
PSG7	5676	broad.mit.edu	37	19	43430675	43430675	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43430675C>T	uc002ovl.3	-	5	1005	c.903G>A	c.(901-903)ACG>ACA	p.T301T	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Silent_p.T179T	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	301	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				TTTCATTTCTCGTGACACTGG	0.502													23	170					0	0	1	0	0
PSG4	5672	broad.mit.edu	37	19	43702350	43702350	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43702350C>T	uc002ovy.2	-	3	610	c.508G>A	c.(508-510)GAT>AAT	p.D170N	PSG6_uc010xwk.1_Missense_Mutation_p.D9N|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Intron|PSG4_uc002ovz.2_Missense_Mutation_p.D170N	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	170	Ig-like C2-type 1.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				GTCGCAGGATCACAGGTTAAG	0.542													21	130					0	0	1	0	0
PSG9	5678	broad.mit.edu	37	19	43762574	43762574	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43762574G>A	uc002owd.3	-	5	1122	c.1023C>T	c.(1021-1023)TTC>TTT	p.F341F	PSG9_uc002owe.3_Silent_p.F248F|PSG9_uc010xwm.1_Silent_p.F248F|PSG9_uc002owf.3_Silent_p.F155F|PSG9_uc002owg.2_Silent_p.F248F|PSG9_uc002owh.2_Silent_p.F155F	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	341	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GGTAATAGGTGAATGAAGGGT	0.463													8	134					0	0	1	0	0
PSG9	5678	broad.mit.edu	37	19	43773539	43773539	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43773539C>T	uc002owd.3	-	1	144	c.45G>A	c.(43-45)TGG>TGA	p.W15*	PSG9_uc002owe.3_Nonsense_Mutation_p.W15*|PSG9_uc010xwm.1_Nonsense_Mutation_p.W15*|PSG9_uc002owf.3_Nonsense_Mutation_p.W15*|PSG9_uc002owg.2_Nonsense_Mutation_p.W15*|PSG9_uc002owh.2_Nonsense_Mutation_p.W15*	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	15					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GGAGCCCCTTCCAGGTGATGC	0.617													24	105					0	0	1	0	0
CD177	57126	broad.mit.edu	37	19	43857890	43857890	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43857890C>T	uc002owi.2	+	1	66	c.24C>T	c.(22-24)GCC>GCT	p.A8A	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	8					blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				TACTGCTGGCCCTCCTGGGGT	0.562													7	109					0	0	1	0	0
TEX101	83639	broad.mit.edu	37	19	43922367	43922367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43922367G>A	uc010xwo.1	+	6	763	c.568G>A	c.(568-570)GGC>AGC	p.G190S	TEX101_uc002owk.2_Missense_Mutation_p.G208S	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	190						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				AGCCATGATTGGCTGCAGGCT	0.502													10	73					0	0	1	0	0
TEX101	83639	broad.mit.edu	37	19	43922545	43922545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43922545C>T	uc010xwo.1	+	6	941	c.746C>T	c.(745-747)TCC>TTC	p.S249F	TEX101_uc002owk.2_Missense_Mutation_p.S267F	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	249						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				ATTCACTTTTCCTAAGAAGGC	0.483													15	59					0	0	1	0	0
LYPD3	27076	broad.mit.edu	37	19	43965848	43965848	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:43965848G>A	uc002owl.1	-	5	804	c.696C>T	c.(694-696)TCC>TCT	p.S232S	LYPD3_uc002owm.2_3'UTR	NM_014400	NP_055215	O95274	LYPD3_HUMAN	GPI-anchored metastasis-associated protein	232						anchored to plasma membrane				pancreas(1)	1		Prostate(69;0.0153)				GGATTCGAGGGGAGAAGTAGG	0.622													18	166					0	0	1	0	0
KCNN4	3783	broad.mit.edu	37	19	44280756	44280756	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:44280756C>T	uc002oxl.2	-	2	588	c.192G>A	c.(190-192)ACG>ACA	p.T64T	KCNN4_uc010eiz.2_5'Flank|KCNN4_uc010eja.1_RNA	NM_002250	NP_002241	O15554	KCNN4_HUMAN	intermediate conductance calcium-activated	64	Helical; Name=Segment S2; (Potential).				defense response	voltage-gated potassium channel complex	calcium-activated potassium channel activity|calmodulin binding			ovary(2)	2		Prostate(69;0.0352)			Clotrimazole(DB00257)|Halothane(DB01159)|Quinine(DB00468)	AAATGCTGATCGTGCATTTAA	0.597													5	53					0	0	1	0	0
ZNF45	7596	broad.mit.edu	37	19	44417558	44417558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:44417558G>A	uc002oxu.1	-	4	2129	c.2030C>T	c.(2029-2031)TCA>TTA	p.S677L	ZNF45_uc002oxw.1_Missense_Mutation_p.S677L|ZNF45_uc002oxv.1_Missense_Mutation_p.S677L	NM_003425	NP_003416	Q02386	ZNF45_HUMAN	zinc finger protein 45	677					multicellular organismal development	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						TTTCCTGTGTGAATCCTCTGA	0.388													6	19					0	0	1	0	0
ZNF45	7596	broad.mit.edu	37	19	44418876	44418876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:44418876G>A	uc002oxu.1	-	4	811	c.712C>T	c.(712-714)CAT>TAT	p.H238Y	ZNF45_uc002oxw.1_Missense_Mutation_p.H238Y|ZNF45_uc002oxv.1_Missense_Mutation_p.H238Y	NM_003425	NP_003416	Q02386	ZNF45_HUMAN	zinc finger protein 45	238	C2H2-type 3.				multicellular organismal development	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						ACTCTCTGATGATGGGGAAGA	0.428													10	76					0	0	1	0	0
ZNF221	7638	broad.mit.edu	37	19	44470696	44470696	+	Missense_Mutation	SNP	C	T	T	rs150319141	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:44470696C>T	uc002oxx.2	+	6	1370	c.1042C>T	c.(1042-1044)CGT>TGT	p.R348C	ZNF221_uc010ejb.1_Missense_Mutation_p.R348C|ZNF221_uc010xws.1_Missense_Mutation_p.R348C	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	zinc finger protein 221	348	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Prostate(69;0.0352)				CAAGAACTTTCGTCAGAGATC	0.408													12	66					0	0	1	0	0
ZNF230	7773	broad.mit.edu	37	19	44515279	44515279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:44515279C>T	uc002oyb.1	+	5	1339	c.1088C>T	c.(1087-1089)CCA>CTA	p.P363L		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	363					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				GGAGAAAAACCATACAGATGT	0.438													8	36					0	0	1	0	0
ZNF224	7767	broad.mit.edu	37	19	44611004	44611004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:44611004C>T	uc002oyh.1	+	6	993	c.691C>T	c.(691-693)CCG>TCG	p.P231S	uc002oyi.2_RNA	NM_013398	NP_037530	Q9NZL3	ZN224_HUMAN	zinc finger protein 224	231					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				TGGAGAGAAACCGTTCAAATG	0.423													11	71					0	0	1	0	0
ZNF226	7769	broad.mit.edu	37	19	44679805	44679805	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:44679805C>T	uc002oyp.2	+	6	534	c.390C>T	c.(388-390)TTC>TTT	p.F130F	ZNF226_uc002oyq.2_Silent_p.F13F|ZNF226_uc002oyr.2_Silent_p.F13F|ZNF226_uc010ejg.2_3'UTR|ZNF226_uc002oys.2_Silent_p.F130F|ZNF226_uc002oyt.2_Silent_p.F130F	NM_001032373	NP_001027545	Q9NYT6	ZN226_HUMAN	zinc finger protein 226 isoform a	130					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				AAGGTGATTTCCCTTACCAGG	0.383													4	32					0	0	1	0	0
ZNF229	7772	broad.mit.edu	37	19	44932917	44932917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:44932917C>T	uc002oze.1	-	6	2473	c.2039G>A	c.(2038-2040)GGA>GAA	p.G680E	ZNF229_uc010ejk.1_Missense_Mutation_p.G334E|ZNF229_uc010ejl.1_Missense_Mutation_p.G674E	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	680					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				GGGCTTTTTTCCCGTGTGGAC	0.507													7	42					0	0	1	0	0
CEACAM20	125931	broad.mit.edu	37	19	45015147	45015147	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:45015147G>A	uc010ejn.1	-	12	1694	c.1678C>T	c.(1678-1680)CTG>TTG	p.L560L	CEACAM20_uc010ejo.1_Silent_p.L548L|CEACAM20_uc010ejp.1_Silent_p.L467L|CEACAM20_uc010ejq.1_Silent_p.L455L	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	560	Cytoplasmic (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				GGGGGCATCAGAGGTTTGGGT	0.507													33	308					0	0	1	0	0
CEACAM20	125931	broad.mit.edu	37	19	45021201	45021201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:45021201G>A	uc010ejn.1	-	6	1131	c.1115C>T	c.(1114-1116)ACC>ATC	p.T372I	CEACAM20_uc010ejo.1_Missense_Mutation_p.T372I|CEACAM20_uc010ejp.1_Intron|CEACAM20_uc010ejq.1_Intron	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	372	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				ACACTGCAGGGTCAGGCTGGA	0.567													32	225					0	0	1	0	0
CEACAM19	56971	broad.mit.edu	37	19	45182151	45182151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:45182151C>T	uc002ozo.3	+	4	1082	c.602C>T	c.(601-603)TCT>TTT	p.S201F	CEACAM19_uc002ozp.3_Missense_Mutation_p.S201F	NM_020219	NP_064604	Q7Z692	CEA19_HUMAN	carcinoembryonic antigen-related cell adhesion	201	Cytoplasmic (Potential).					integral to membrane					0	Lung NSC(12;0.00308)|all_lung(12;0.00806)	Prostate(69;0.0376)				ggccagggatctctgtccatc	0.02													65	483					0	0	1	0	0
CEACAM16	388551	broad.mit.edu	37	19	45208885	45208885	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:45208885C>T	uc010xxd.1	+	5	893	c.687C>T	c.(685-687)CTC>CTT	p.L229L	CEACAM16_uc002ozq.2_Silent_p.L288L	NM_001039213	NP_001034302	A7LI12	A7LI12_HUMAN	carcinoembryonic antigen-related cell adhesion	229										ovary(1)	1	Lung NSC(12;0.000698)|all_lung(12;0.002)	Prostate(69;0.0376)|Ovarian(192;0.231)				TGGCCATCCTCCAGGATTCCA	0.602													30	179					0	0	1	0	0
BCL3	602	broad.mit.edu	37	19	45262039	45262039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:45262039C>T	uc010xxe.1	+	8	1188	c.1118C>T	c.(1117-1119)CCC>CTC	p.P373L		NM_005178	NP_005169	P20749	BCL3_HUMAN	B-cell CLL/lymphoma 3	373	Pro/Ser-rich.				DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|I-kappaB kinase/NF-kappaB cascade|maintenance of protein location in nucleus|negative regulation of apoptosis|negative regulation of interleukin-8 biosynthetic process|negative regulation of transcription, DNA-dependent|positive regulation of translation|protein import into nucleus, translocation|regulation of DNA binding|regulation of NF-kappaB import into nucleus|response to UV-C|response to virus	Bcl3-Bcl10 complex|Bcl3/NF-kappaB2 complex|nucleus|perinuclear region of cytoplasm	protein binding, bridging|transcription factor binding			ovary(1)|lung(1)	2	Lung NSC(12;0.000698)|all_lung(12;0.002)	Ovarian(192;0.0728)				CAGCCAGACCCCTCCCCTGAC	0.577			T	IGH@	CLL 								14	144					0	0	1	0	0
CBLC	23624	broad.mit.edu	37	19	45284519	45284519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:45284519G>A	uc002ozs.2	+	3	619	c.556G>A	c.(556-558)GAA>AAA	p.E186K	CBLC_uc010ejt.2_Missense_Mutation_p.E186K	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	186	EF-hand-like.|Cbl-PTB.				cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				CCACCCTGTGGAACCAGGCTG	0.642			M		AML								63	501					0	0	1	0	0
CBLC	23624	broad.mit.edu	37	19	45284534	45284534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:45284534G>A	uc002ozs.2	+	3	634	c.571G>A	c.(571-573)GCC>ACC	p.A191T	CBLC_uc010ejt.2_Missense_Mutation_p.A191T	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	191	EF-hand-like.|Cbl-PTB.				cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				AGGCTGCACAGCCCTGGCCTT	0.642			M		AML								72	536					0	0	1	0	0
BCAM	4059	broad.mit.edu	37	19	45315790	45315790	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:45315790G>A	uc002ozu.2	+	4	533	c.489G>A	c.(487-489)GAG>GAA	p.E163E	BCAM_uc002ozt.1_Silent_p.E163E	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	163	Extracellular (Potential).|Ig-like V-type 2.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				CTGTGATGGAGGACTCTGCCC	0.388													18	298					0	0	1	0	0
APOC4	346	broad.mit.edu	37	19	45448544	45448544	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:45448544G>A	uc002pag.1	+	3	406	c.366G>A	c.(364-366)GGG>GGA	p.G122G	APOC2_uc002pah.2_5'Flank	NM_001646	NP_001637	P55056	APOC4_HUMAN	apolipoprotein C-IV precursor	122					lipid metabolic process|positive regulation of sequestering of triglyceride|triglyceride homeostasis	high-density lipoprotein particle|very-low-density lipoprotein particle	lipid transporter activity			breast(1)	1	Lung NSC(12;0.00858)|all_lung(12;0.0197)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00334)|Epithelial(262;0.178)		TTGTCTGTGGGGACAAGGACC	0.358													59	292					0	0	1	0	0
SFRS16	11129	broad.mit.edu	37	19	45567819	45567819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:45567819C>T	uc002pak.2	+	13	1438	c.1340C>T	c.(1339-1341)TCC>TTC	p.S447F	SFRS16_uc002pal.2_RNA|SFRS16_uc010xxh.1_Missense_Mutation_p.S385F|SFRS16_uc002pam.2_Missense_Mutation_p.S447F	NM_007056	NP_008987	Q8N2M8	CLASR_HUMAN	splicing factor, arginine/serine-rich 16	447	Ser-rich.|Arg-rich.				mRNA processing|RNA splicing	nucleus					0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GGTGGGGGCTCCCGAGACGGA	0.567													5	19					0	0	1	0	0
PPP1R13L	10848	broad.mit.edu	37	19	45899670	45899670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:45899670G>A	uc002pbn.2	-	5	814	c.737C>T	c.(736-738)CCT>CTT	p.P246L	PPP1R13L_uc002pbo.2_Missense_Mutation_p.P246L|PPP1R13L_uc002pbp.2_Missense_Mutation_p.P246L	NM_006663	NP_006654	Q8WUF5	IASPP_HUMAN	protein phosphatase 1, regulatory subunit 13	246	Pro-rich.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	transcription corepressor activity|transcription factor binding			skin(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0182)		GGCTTTCGGAGGCCGCCGGCG	0.657													12	66					0	0	1	0	0
FOSB	2354	broad.mit.edu	37	19	45974140	45974140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:45974140G>A	uc002pbx.3	+	2	972	c.380G>A	c.(379-381)GGA>GAA	p.G127E	ERCC1_uc002pbu.1_Intron|FOSB_uc002pbw.2_Missense_Mutation_p.G127E|FOSB_uc010eke.2_Missense_Mutation_p.G88E|FOSB_uc002pby.3_Missense_Mutation_p.G127E|FOSB_uc010eka.1_Missense_Mutation_p.G88E|FOSB_uc010ekb.1_Missense_Mutation_p.G127E|FOSB_uc010ekc.1_Intron|FOSB_uc010ekf.2_Missense_Mutation_p.G88E|FOSB_uc010ekd.1_Missense_Mutation_p.G127E|FOSB_uc010ekg.2_Intron|FOSB_uc002pca.3_Missense_Mutation_p.G78E	NM_006732	NP_006723	P53539	FOSB_HUMAN	FBJ murine osteosarcoma viral oncogene homolog B	127					behavior|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|lung(1)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00814)|Epithelial(262;0.18)|GBM - Glioblastoma multiforme(486;0.242)		TCCACCAGCGGAACTACCAGT	0.657													5	80					0	0	1	0	0
GIPR	2696	broad.mit.edu	37	19	46176122	46176122	+	Silent	SNP	C	T	T	rs148407413		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:46176122C>T	uc002pcu.1	+	5	393	c.294C>T	c.(292-294)TTC>TTT	p.F98F	GIPR_uc002pct.1_Silent_p.F98F|GIPR_uc010xxp.1_Silent_p.F62F|GIPR_uc010xxq.1_RNA|MIR642_hsa-mir-642|MI0003657_5'Flank	NM_000164	NP_000155	P48546	GIPR_HUMAN	gastric inhibitory polypeptide receptor	98	Extracellular (Potential).				generation of precursor metabolites and energy|response to nutrient	integral to membrane|plasma membrane				skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0056)|GBM - Glioblastoma multiforme(486;0.0832)|Epithelial(262;0.199)		CTGCAGGTTTCGTCCTCCGCC	0.478													7	45					0	0	1	0	0
GIPR	2696	broad.mit.edu	37	19	46180351	46180351	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:46180351C>T	uc002pcu.1	+	8	877	c.778C>T	c.(778-780)CTG>TTG	p.L260L	GIPR_uc002pct.1_Silent_p.L260L|GIPR_uc010xxp.1_Silent_p.L224L|GIPR_uc010xxq.1_RNA	NM_000164	NP_000155	P48546	GIPR_HUMAN	gastric inhibitory polypeptide receptor	260	Helical; Name=4; (Potential).				generation of precursor metabolites and energy|response to nutrient	integral to membrane|plasma membrane				skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0056)|GBM - Glioblastoma multiforme(486;0.0832)|Epithelial(262;0.199)		CCGCTACTACCTGCTCCTCGG	0.692													4	52					0	0	1	0	0
DMWD	1762	broad.mit.edu	37	19	46289876	46289876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:46289876G>A	uc002pdj.1	-	3	924	c.878C>T	c.(877-879)TCG>TTG	p.S293L	DMWD_uc002pdk.1_Missense_Mutation_p.S293L|DMWD_uc010eko.1_5'UTR	NM_004943	NP_004934	Q09019	DMWD_HUMAN	dystrophia myotonica-containing WD repeat motif	293	WD 2.				meiosis						0		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00604)|GBM - Glioblastoma multiforme(486;0.0807)|Epithelial(262;0.236)		GCCATCGGGCGAGAAGGCGAA	0.647													5	40					0	0	1	0	0
RSPH6A	81492	broad.mit.edu	37	19	46307638	46307638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:46307638C>T	uc002pdm.2	-	3	1668	c.1525G>A	c.(1525-1527)GAG>AAG	p.E509K	RSPH6A_uc002pdl.2_Missense_Mutation_p.E245K	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	509	Glu-rich.					intracellular				ovary(1)|central_nervous_system(1)	2						TCCTCCTCCTCGTCGCCCTCC	0.657													7	41					0	0	1	0	0
SYMPK	8189	broad.mit.edu	37	19	46332353	46332353	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:46332353G>A	uc002pdn.2	-	14	2105	c.1860C>T	c.(1858-1860)TTC>TTT	p.F620F	SYMPK_uc002pdo.1_Silent_p.F620F|SYMPK_uc002pdp.1_Silent_p.F620F	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	620					cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		AGAGCCAGGCGAAGGCCAGGT	0.642													15	75					0	0	1	0	0
NANOS2	339345	broad.mit.edu	37	19	46417599	46417599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:46417599C>T	uc002pdu.2	-	1	438	c.353G>A	c.(352-354)GGT>GAT	p.G118D		NM_001029861	NP_001025032	P60321	NANO2_HUMAN	nanos homolog 2	118					germ-line stem cell maintenance|mRNA catabolic process|multicellular organismal development|negative regulation of meiosis|regulation of translation|spermatogenesis	cytoplasmic mRNA processing body|perinuclear region of cytoplasm	RNA binding|zinc ion binding				0		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0668)|Epithelial(262;0.231)		CTGCTGGCCACCGTTAAGCGG	0.672													4	34					0	0	1	0	0
NANOS2	339345	broad.mit.edu	37	19	46417850	46417850	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:46417850C>T	uc002pdu.2	-	1	187	c.102G>A	c.(100-102)GAG>GAA	p.E34E		NM_001029861	NP_001025032	P60321	NANO2_HUMAN	nanos homolog 2	34					germ-line stem cell maintenance|mRNA catabolic process|multicellular organismal development|negative regulation of meiosis|regulation of translation|spermatogenesis	cytoplasmic mRNA processing body|perinuclear region of cytoplasm	RNA binding|zinc ion binding				0		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0668)|Epithelial(262;0.231)		GCTCCTCAATCTCTTGGGTCT	0.652													9	79					0	0	1	0	0
IGFL3	388555	broad.mit.edu	37	19	46623587	46623587	+	Nonstop_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:46623587T>A	uc002pea.1	-	4	403	c.378A>T	c.(376-378)TAA>TAT	p.*126Y		NM_207393	NP_997276	Q6UXB1	IGFL3_HUMAN	IGF-like family member 3 precursor	126						extracellular region	protein binding				0		Ovarian(192;0.0175)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00473)|GBM - Glioblastoma multiforme(486;0.0149)|Epithelial(262;0.239)		cctggggtttttatgggtaca	0.08													7	41					0	0	1	0	0
HIF3A	64344	broad.mit.edu	37	19	46808539	46808539	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:46808539G>A	uc002peh.2	+	3	284	c.255G>A	c.(253-255)CTG>CTA	p.L85L	HIF3A_uc002pef.1_Silent_p.L85L|HIF3A_uc002peg.3_Silent_p.L85L|HIF3A_uc010xxx.1_RNA|HIF3A_uc002pei.3_Silent_p.L29L|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Silent_p.L29L|HIF3A_uc010xxy.1_Intron|HIF3A_uc002pel.2_Silent_p.L83L|HIF3A_uc010xxz.1_Intron	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	85	PAS 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		GAGAACCACTGGATGCCTGCT	0.607													8	115					0	0	1	0	0
PNMAL2	57469	broad.mit.edu	37	19	46997267	46997267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:46997267C>T	uc002pes.2	-	1	1903	c.1456G>A	c.(1456-1458)GAG>AAG	p.E486K	uc002peu.1_5'Flank	NM_020709	NP_065760	Q9ULN7	PNML2_HUMAN	PNMA-like 2	486										central_nervous_system(1)	1		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.00233)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		GCCAATACCTCCCCCAGTTTG	0.622													10	98					0	0	1	0	0
PNMAL2	57469	broad.mit.edu	37	19	46998367	46998367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:46998367G>A	uc002pes.2	-	1	803	c.356C>T	c.(355-357)GCG>GTG	p.A119V	uc002peu.1_Missense_Mutation_p.A160T	NM_020709	NP_065760	Q9ULN7	PNML2_HUMAN	PNMA-like 2	119										central_nervous_system(1)	1		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.00233)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		CCCAGCCTCCGCGGCCTGCGT	0.637													10	86					0	0	1	0	0
PRKD2	25865	broad.mit.edu	37	19	47219486	47219486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:47219486G>A	uc002pfh.2	-	2	484	c.142C>T	c.(142-144)CAC>TAC	p.H48Y	PRKD2_uc002pfg.2_5'Flank|PRKD2_uc002pfi.2_Missense_Mutation_p.H48Y|PRKD2_uc002pfj.2_Missense_Mutation_p.H48Y|PRKD2_uc010xye.1_Missense_Mutation_p.H48Y|PRKD2_uc002pfk.2_5'UTR	NM_001079881	NP_001073350	Q9BZL6	KPCD2_HUMAN	protein kinase D2 isoform A	48					cell death|intracellular signal transduction|positive regulation of transcription from RNA polymerase II promoter|protein autophosphorylation|T cell receptor signaling pathway	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein kinase C activity			ovary(2)|central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)	7		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000189)|all cancers(93;0.000545)|Epithelial(262;0.0219)|GBM - Glioblastoma multiforme(486;0.0353)		ATCTGGATGTGAAAGGAGACC	0.697													5	49					0	0	1	0	0
STRN4	29888	broad.mit.edu	37	19	47226197	47226197	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:47226197G>A	uc002pfl.2	-	14	1809	c.1776C>T	c.(1774-1776)GTC>GTT	p.V592V	STRN4_uc002pfm.2_Silent_p.V599V|STRN4_uc010xyf.1_RNA	NM_013403	NP_037535	Q9NRL3	STRN4_HUMAN	zinedin isoform 1	592	WD 4.					cytoplasm|membrane	armadillo repeat domain binding|calmodulin binding|protein complex binding|protein phosphatase 2A binding				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000563)|all cancers(93;0.00138)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.035)		CTGAGGTGGGGACCCCGTGCT	0.667													5	56					0	0	1	0	0
SLC1A5	6510	broad.mit.edu	37	19	47278983	47278983	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:47278983G>A	uc002pfs.2	-	8	2030	c.1410C>T	c.(1408-1410)CTC>CTT	p.L470L	SLC1A5_uc010xyh.1_Silent_p.L268L|SLC1A5_uc002pfq.2_Silent_p.L294L|SLC1A5_uc002pfr.2_Silent_p.L242L	NM_005628	NP_005619	Q15758	AAAT_HUMAN	solute carrier family 1 member 5 isoform 1	470					cellular nitrogen compound metabolic process	integral to plasma membrane|melanosome|membrane fraction	neutral amino acid transmembrane transporter activity|protein binding|receptor activity|sodium:dicarboxylate symporter activity				0		all_epithelial(76;0.00314)|Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000338)|all cancers(93;0.000882)|Epithelial(262;0.0211)|GBM - Glioblastoma multiforme(486;0.0341)	L-Asparagine(DB00174)|L-Glutamine(DB00130)	CTTCTACATTGAGGACGGTAC	0.552													8	57					0	0	1	0	0
SLC1A5	6510	broad.mit.edu	37	19	47280251	47280251	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:47280251G>A	uc002pfs.2	-	7	1989	c.1369C>T	c.(1369-1371)CTG>TTG	p.L457L	SLC1A5_uc010xyh.1_Silent_p.L255L|SLC1A5_uc002pfq.2_Silent_p.L281L|SLC1A5_uc002pfr.2_Silent_p.L229L	NM_005628	NP_005619	Q15758	AAAT_HUMAN	solute carrier family 1 member 5 isoform 1	457					cellular nitrogen compound metabolic process	integral to plasma membrane|melanosome|membrane fraction	neutral amino acid transmembrane transporter activity|protein binding|receptor activity|sodium:dicarboxylate symporter activity				0		all_epithelial(76;0.00314)|Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000338)|all cancers(93;0.000882)|Epithelial(262;0.0211)|GBM - Glioblastoma multiforme(486;0.0341)	L-Asparagine(DB00174)|L-Glutamine(DB00130)	TCCACAGCCAGGATCAAGGAG	0.612													5	62					0	0	1	0	0
ZC3H4	23211	broad.mit.edu	37	19	47570385	47570385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:47570385G>A	uc002pga.3	-	15	3178	c.3140C>T	c.(3139-3141)TCT>TTT	p.S1047F	ZC3H4_uc002pgb.1_RNA	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	1047							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		GAGGATGCGAGACAGAAGTTC	0.706													11	33					0	0	1	0	0
SAE1	10055	broad.mit.edu	37	19	47673089	47673089	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:47673089C>T	uc002pgc.2	+	6	698	c.642C>T	c.(640-642)TGC>TGT	p.C214C	SAE1_uc002pgd.2_Silent_p.C214C|SAE1_uc010ekx.2_Silent_p.C214C|SAE1_uc010ekw.2_RNA|SAE1_uc010xyk.1_Silent_p.C40C|SAE1_uc002pge.2_Silent_p.C150C	NM_016402	NP_057486	Q9UBE0	SAE1_HUMAN	SubName: Full=SUMO-1 activating enzyme subunit 1, isoform CRA_b; SubName: Full=cDNA, FLJ96708, Homo sapiens SUMO-1 activating enzyme subunit 1 (SAE1), mRNA;	214					protein sumoylation|protein ubiquitination	nucleus	ATP-dependent protein binding|enzyme activator activity|ligase activity|protein C-terminus binding|protein heterodimerization activity|ubiquitin activating enzyme activity			ovary(1)	1		all_cancers(25;1.13e-05)|all_lung(116;0.000192)|all_epithelial(76;0.000274)|Lung NSC(112;0.000446)|all_neural(266;0.0652)|Ovarian(192;0.15)		all cancers(93;0.00013)|OV - Ovarian serous cystadenocarcinoma(262;0.000146)|Epithelial(262;0.00697)|GBM - Glioblastoma multiforme(486;0.0278)		TGGTCTTCTGCCCTGTTAAAG	0.483													10	92					0	0	1	0	0
C5AR1	728	broad.mit.edu	37	19	47823181	47823181	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:47823181G>A	uc002pgj.1	+	2	196	c.147G>A	c.(145-147)CTG>CTA	p.L49L		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	49	Helical; Name=1; (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		TCGTCTTCCTGGTGGGAGTGC	0.562													6	74					0	0	1	0	0
C5AR1	728	broad.mit.edu	37	19	47823546	47823546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:47823546C>T	uc002pgj.1	+	2	561	c.512C>T	c.(511-513)TCC>TTC	p.S171F		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	171	Helical; Name=4; (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		ACCATACCCTCCTTCCTGTAC	0.612													17	126					0	0	1	0	0
SLC8A2	6543	broad.mit.edu	37	19	47940747	47940747	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:47940747C>T	uc002pgx.2	-	8	2360	c.2082G>A	c.(2080-2082)CAG>CAA	p.Q694Q	SLC8A2_uc010xyq.1_Silent_p.Q450Q|SLC8A2_uc010xyr.1_Silent_p.Q157Q|SLC8A2_uc010ele.2_Silent_p.Q694Q	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	694	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		CCTCTAAAAACTGCTCCCTCC	0.343													5	85					0	0	1	0	0
KPTN	11133	broad.mit.edu	37	19	47986434	47986434	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:47986434G>A	uc002pgy.2	-	4	537	c.433C>T	c.(433-435)CAG>TAG	p.Q145*	KPTN_uc010xys.1_RNA|uc002pgz.1_5'Flank	NM_007059	NP_008990	Q9Y664	KPTN_HUMAN	kaptin (actin binding protein)	145					actin filament organization|cellular component movement|sensory perception of sound	actin cytoskeleton|growth cone|microtubule organizing center|nucleus|perinuclear region of cytoplasm|stereocilium	actin binding			ovary(1)	1		all_cancers(25;1.55e-10)|all_epithelial(76;3.4e-08)|all_lung(116;1.73e-07)|Lung NSC(112;3.95e-07)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		OV - Ovarian serous cystadenocarcinoma(262;0.000428)|all cancers(93;0.000631)|Epithelial(262;0.0153)|GBM - Glioblastoma multiforme(486;0.0694)		TGGCACAGCTGGAACGGAGTG	0.582													8	200					0	0	1	0	0
GLTSCR1	29998	broad.mit.edu	37	19	48197858	48197858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:48197858C>T	uc002phh.3	+	8	2964	c.2770C>T	c.(2770-2772)CCA>TCA	p.P924S	GLTSCR1_uc002phi.3_Missense_Mutation_p.P682S	NM_015711	NP_056526	Q9NZM4	GSCR1_HUMAN	glioma tumor suppressor candidate region gene 1	924							protein binding			pancreas(3)	3		all_cancers(25;1.8e-07)|all_lung(116;5.73e-06)|Lung NSC(112;9.69e-06)|all_epithelial(76;2.42e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		all cancers(93;0.000358)|OV - Ovarian serous cystadenocarcinoma(262;0.000576)|Epithelial(262;0.0212)|GBM - Glioblastoma multiforme(486;0.0355)		CACTCCCCCTCCAACCCTCCA	0.692													6	34					0	0	1	0	0
SULT2A1	6822	broad.mit.edu	37	19	48378081	48378081	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:48378081C>T	uc002phr.2	-	5	718	c.578G>A	c.(577-579)AGA>AAA	p.R193K		NM_003167	NP_003158	Q06520	ST2A1_HUMAN	bile-salt sulfotransferase 2A1	193	PAPS.				3'-phosphoadenosine 5'-phosphosulfate metabolic process|bile acid catabolic process|cellular lipid metabolic process|digestion|sulfation|xenobiotic metabolic process	cytosol	bile-salt sulfotransferase activity			ovary(1)|pancreas(1)	2		all_cancers(25;3.02e-09)|all_lung(116;6.48e-07)|all_epithelial(76;7.35e-07)|Lung NSC(112;1.56e-06)|all_neural(266;0.0146)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000254)|all cancers(93;0.000545)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.0552)		CTCTATGGTTCTTCCTGTGTC	0.244													10	29					0	0	1	0	0
ZNF114	163071	broad.mit.edu	37	19	48789078	48789078	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:48789078G>A	uc002pil.1	+	6	694	c.197G>A	c.(196-198)AGA>AAA	p.R66K	ZNF114_uc010elv.1_Missense_Mutation_p.R66K|ZNF114_uc002pim.1_Missense_Mutation_p.R66K|ZNF114_uc002pin.2_Missense_Mutation_p.R32K	NM_153608	NP_705836	Q8NC26	ZN114_HUMAN	zinc finger protein 114	66	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_epithelial(76;8.01e-05)|all_lung(116;0.000112)|Lung NSC(112;0.000192)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;7.56e-05)|all cancers(93;0.000113)|Epithelial(262;0.00962)|GBM - Glioblastoma multiforme(486;0.0153)		CTTCCTAAAAGAACATTTCCT	0.443													10	67					0	0	1	0	0
LMTK3	114783	broad.mit.edu	37	19	49001465	49001465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:49001465C>T	uc002pjk.2	-	12	2948	c.2948G>A	c.(2947-2949)AGA>AAA	p.R983K		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		TTTCTCTTCTCTCTCGGGGGA	0.647													8	87					0	0	1	0	0
SULT2B1	6820	broad.mit.edu	37	19	49090502	49090502	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:49090502C>T	uc002pjl.2	+	3	312	c.231C>T	c.(229-231)ATC>ATT	p.I77I	SULT2B1_uc002pjm.2_Silent_p.I62I	NM_177973	NP_814444	O00204	ST2B1_HUMAN	sulfotransferase family, cytosolic, 2B, member 1	77					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	alcohol sulfotransferase activity|protein binding|steroid sulfotransferase activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000115)|all cancers(93;0.000147)|GBM - Glioblastoma multiforme(486;0.00707)|Epithelial(262;0.0178)		CCTGGATGATCGAGATCATCT	0.498													7	40					0	0	1	0	0
SULT2B1	6820	broad.mit.edu	37	19	49100166	49100166	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:49100166C>T	uc002pjl.2	+	6	897	c.816C>T	c.(814-816)TTC>TTT	p.F272F	SULT2B1_uc002pjm.2_Silent_p.F257F	NM_177973	NP_814444	O00204	ST2B1_HUMAN	sulfotransferase family, cytosolic, 2B, member 1	272					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	alcohol sulfotransferase activity|protein binding|steroid sulfotransferase activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000115)|all cancers(93;0.000147)|GBM - Glioblastoma multiforme(486;0.00707)|Epithelial(262;0.0178)		GCGGGGCCTTCCTCCGGAAAG	0.363													3	9					0	0	1	0	0
FUT2	2524	broad.mit.edu	37	19	49206790	49206790	+	Missense_Mutation	SNP	G	A	A	rs148371614	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:49206790G>A	uc002pke.3	+	2	688	c.577G>A	c.(577-579)GGC>AGC	p.G193S	FUT2_uc010emc.2_Missense_Mutation_p.G193S	NM_001097638	NP_001091107	Q10981	FUT2_HUMAN	fucosyltransferase 2	193	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	galactoside 2-alpha-L-fucosyltransferase activity			central_nervous_system(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.00011)|all cancers(93;0.000238)|GBM - Glioblastoma multiforme(486;0.0164)|Epithelial(262;0.017)		GAGCCGGCCGGGCACCTTTGT	0.652													4	62					0	0	1	0	0
RASIP1	54922	broad.mit.edu	37	19	49238556	49238556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:49238556C>T	uc002pki.2	-	4	1273	c.1076G>A	c.(1075-1077)GGA>GAA	p.G359E		NM_017805	NP_060275	Q5U651	RAIN_HUMAN	Ras-interacting protein 1	359					signal transduction	Golgi stack|perinuclear region of cytoplasm				pancreas(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000272)|Epithelial(262;0.0155)|GBM - Glioblastoma multiforme(486;0.0222)		GTCTGCAGTTCCGATTTGGGC	0.672													6	35					0	0	1	0	0
FUT1	2523	broad.mit.edu	37	19	49254056	49254056	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:49254056G>A	uc002pkk.2	-	4	1458	c.483C>T	c.(481-483)TTC>TTT	p.F161F		NM_000148	NP_000139	P19526	FUT1_HUMAN	fucosyltransferase 1	161	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to plasma membrane|membrane fraction	galactoside 2-alpha-L-fucosyltransferase activity			ovary(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000135)|all cancers(93;0.000354)|Epithelial(262;0.0191)|GBM - Glioblastoma multiforme(486;0.0222)		AGAGCTTCAGGAAAGGATCTC	0.612													8	199					0	0	1	0	0
FUT1	2523	broad.mit.edu	37	19	49254491	49254491	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:49254491G>A	uc002pkk.2	-	4	1023	c.48C>T	c.(46-48)GTC>GTT	p.V16V		NM_000148	NP_000139	P19526	FUT1_HUMAN	fucosyltransferase 1	16	Helical; Signal-anchor for type II membrane protein; (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to plasma membrane|membrane fraction	galactoside 2-alpha-L-fucosyltransferase activity			ovary(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000135)|all cancers(93;0.000354)|Epithelial(262;0.0191)|GBM - Glioblastoma multiforme(486;0.0222)		AGAGGACACAGACTAGCAGGA	0.572													5	39					0	0	1	0	0
TULP2	7288	broad.mit.edu	37	19	49398412	49398412	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:49398412C>T	uc002pkz.2	-	6	508	c.357G>A	c.(355-357)AGG>AGA	p.R119R		NM_003323	NP_003314	O00295	TULP2_HUMAN	tubby like protein 2	119					visual perception	cytoplasm|extracellular region				ovary(1)|kidney(1)|skin(1)	3		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000259)|all cancers(93;0.000435)|Epithelial(262;0.0221)|GBM - Glioblastoma multiforme(486;0.0234)		GACCGAGATTCCTGAACACTG	0.488													7	71					0	0	1	0	0
TRPM4	54795	broad.mit.edu	37	19	49671939	49671939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:49671939C>T	uc002pmw.2	+	6	814	c.742C>T	c.(742-744)CGC>TGC	p.R248C	TRPM4_uc010emu.2_Missense_Mutation_p.R248C|TRPM4_uc010yak.1_5'UTR|TRPM4_uc002pmx.2_Missense_Mutation_p.R74C|TRPM4_uc010emv.2_Missense_Mutation_p.R133C|TRPM4_uc010yal.1_5'UTR	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	248	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		GGGCGAGAACCGCTTCCGCTT	0.642													4	15					0	0	1	0	0
SLC17A7	57030	broad.mit.edu	37	19	49937004	49937004	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:49937004C>T	uc002pnp.2	-	7	1018	c.846G>A	c.(844-846)GCG>GCA	p.A282A	SLC17A7_uc002pnq.1_Silent_p.A215A|SLC17A7_uc002pno.2_5'UTR	NM_020309	NP_064705	Q9P2U7	VGLU1_HUMAN	solute carrier family 17, member 7	282	Cytoplasmic (Potential).				glutamate secretion|neurotransmitter secretion	cell junction|clathrin sculpted glutamate transport vesicle membrane|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|sodium-dependent phosphate transmembrane transporter activity|sodium:inorganic phosphate symporter activity			ovary(1)|pancreas(1)|skin(1)	3		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(486;0.0245)		TCATGAGTTTCGCGCTCTCTC	0.627													10	36					0	0	1	0	0
CPT1C	126129	broad.mit.edu	37	19	50212045	50212045	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:50212045G>A	uc002ppj.2	+	13	1720	c.1515G>A	c.(1513-1515)CCG>CCA	p.P505P	CPT1C_uc002ppl.3_Silent_p.P471P|CPT1C_uc002ppi.2_Silent_p.P422P|CPT1C_uc002ppk.2_Silent_p.P494P|CPT1C_uc010eng.2_Silent_p.P505P|CPT1C_uc010enh.2_Silent_p.P505P|CPT1C_uc010ybc.1_Silent_p.P376P|CPT1C_uc010eni.1_Silent_p.P162P	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	505	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		AGGGGCACCCGGACCCCACAC	0.572													12	90					0	0	1	0	0
TSKS	60385	broad.mit.edu	37	19	50247554	50247554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:50247554C>T	uc002ppm.2	-	8	1306	c.1295G>A	c.(1294-1296)CGA>CAA	p.R432Q		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	432							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		AGGCCCTCTTCGAGAGTTCTG	0.612													5	53					0	0	1	0	0
FUZ	80199	broad.mit.edu	37	19	50311713	50311713	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:50311713G>A	uc002ppq.1	-	10	1096	c.991C>T	c.(991-993)CGA>TGA	p.R331*	FUZ_uc002ppr.1_Nonsense_Mutation_p.R231*|FUZ_uc002pps.1_RNA|FUZ_uc002ppt.1_RNA|FUZ_uc002ppu.1_Nonsense_Mutation_p.R295*|FUZ_uc002ppv.1_Nonsense_Mutation_p.R281*	NM_025129	NP_079405	Q9BT04	FUZZY_HUMAN	fuzzy homolog	331	Leu-rich.				cilium assembly|embryonic body morphogenesis|embryonic skeletal system morphogenesis|establishment of planar polarity|hair follicle development|neural tube closure|protein transport|regulation of smoothened signaling pathway	cytoplasm|cytoskeleton					0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00793)|GBM - Glioblastoma multiforme(134;0.0116)		TAGAAGTTTCGGAGGAGGCGC	0.672													7	17					0	0	1	0	0
PTOV1	53635	broad.mit.edu	37	19	50357706	50357706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:50357706C>T	uc002pqf.1	+	2	385	c.215C>T	c.(214-216)TCC>TTC	p.S72F	uc002ppy.3_5'Flank|PTOV1_uc010ybf.1_Missense_Mutation_p.S40F|PTOV1_uc002ppz.3_RNA|PTOV1_uc002pqb.3_Missense_Mutation_p.S40F|PTOV1_uc002pqa.2_RNA|PTOV1_uc002pqc.1_RNA|PTOV1_uc002pqd.2_RNA|PTOV1_uc002pqe.1_RNA	NM_017432	NP_059128	Q86YD1	PTOV1_HUMAN	prostate tumor overexpressed 1	72					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|plasma membrane					0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.0132)		ATCGGTCCCTCCTCACCTGGG	0.667													20	125					0	0	1	0	0
PNKP	11284	broad.mit.edu	37	19	50370400	50370400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:50370400G>A	uc002pqh.2	-	1	114	c.62C>T	c.(61-63)CCC>CTC	p.P21L	PNKP_uc002pqg.2_5'Flank|PNKP_uc002pqi.2_5'UTR|PNKP_uc002pqj.2_Missense_Mutation_p.P21L|PNKP_uc010enm.2_Missense_Mutation_p.P21L|PNKP_uc002pqk.2_Missense_Mutation_p.P21L	NM_007254	NP_009185	Q96T60	PNKP_HUMAN	polynucleotide kinase 3' phosphatase	21					DNA damage response, detection of DNA damage|DNA-dependent DNA replication|nucleotide-excision repair, DNA damage removal|response to oxidative stress|response to radiation	nucleolus	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|damaged DNA binding|double-stranded DNA binding|endonuclease activity|nucleotide kinase activity|polynucleotide 3'-phosphatase activity|protein binding			ovary(1)|kidney(1)	2		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0118)|OV - Ovarian serous cystadenocarcinoma(262;0.0134)		CAGGAAGATGGGGGGCGCTCC	0.711								Other_BER_factors					11	41					0	0	1	0	0
TBC1D17	79735	broad.mit.edu	37	19	50385350	50385350	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:50385350C>T	uc002pqo.2	+	6	732	c.580C>T	c.(580-582)CTC>TTC	p.L194F	TBC1D17_uc010enn.1_RNA|TBC1D17_uc010ybg.1_Missense_Mutation_p.L161F|TBC1D17_uc002pqp.2_5'UTR|TBC1D17_uc002pqq.1_RNA|TBC1D17_uc002pqr.2_5'UTR|TBC1D17_uc002pqs.2_5'Flank	NM_024682	NP_078958	Q9HA65	TBC17_HUMAN	TBC1 domain family, member 17	194						intracellular	Rab GTPase activator activity				0		all_lung(116;0.000338)|Lung NSC(112;0.000446)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		CTCCTCTGCTCTCTCCAACTC	0.647													37	248					0	0	1	0	0
IL4I1	259307	broad.mit.edu	37	19	50399229	50399229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:50399229G>A	uc002pqt.1	-	3	173	c.95C>T	c.(94-96)CCC>CTC	p.P32L	IL4I1_uc002pqv.1_Missense_Mutation_p.P41L|IL4I1_uc010eno.1_Missense_Mutation_p.P40L|IL4I1_uc002pqw.1_Missense_Mutation_p.P40L|IL4I1_uc002pqu.1_Missense_Mutation_p.P54L	NM_152899	NP_690863	Q96RQ9	OXLA_HUMAN	interleukin 4 induced 1 isoform 1 precursor	32						lysosome	L-amino-acid oxidase activity			lung(1)|ovary(1)|prostate(1)	3		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00245)|OV - Ovarian serous cystadenocarcinoma(262;0.0169)		TTTCTCGAAGGGGTCTTGGCT	0.448													6	57					0	0	1	0	0
NUP62	23636	broad.mit.edu	37	19	50412655	50412655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:50412655G>A	uc002pqx.2	-	2	514	c.410C>T	c.(409-411)CCC>CTC	p.P137L	IL4I1_uc002pqv.1_Intron|IL4I1_uc010eno.1_Intron|IL4I1_uc002pqw.1_Intron|IL4I1_uc002pqu.1_Intron|NUP62_uc002pqy.2_Missense_Mutation_p.P137L|NUP62_uc002pqz.2_Missense_Mutation_p.P137L|NUP62_uc002pra.2_Missense_Mutation_p.P137L|NUP62_uc002prb.2_Missense_Mutation_p.P137L|NUP62_uc002prc.2_Missense_Mutation_p.P137L	NM_153719	NP_714941	P37198	NUP62_HUMAN	nucleoporin 62kDa	137	15 X 9 AA approximate repeats.|Thr-rich.|9.				carbohydrate metabolic process|cell death|cell surface receptor linked signaling pathway|glucose transport|hormone-mediated signaling pathway|mRNA transport|negative regulation of apoptosis|negative regulation of cell proliferation|nucleocytoplasmic transport|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|protein transport|regulation of glucose transport|transcription, DNA-dependent|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleocytoplasmic shuttling complex|ribonucleoprotein complex|spindle pole	chromatin binding|protein serine/threonine kinase activity|receptor signaling complex scaffold activity|SH2 domain binding|structural constituent of nuclear pore|thyroid hormone receptor binding|ubiquitin binding				0		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00242)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		AAAGCCGGTGGGTGCTGTGCC	0.627													8	64					0	0	1	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50453412	50453412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:50453412C>T	uc010ybh.1	-	11	2003	c.1912G>A	c.(1912-1914)GAA>AAA	p.E638K	SIGLEC11_uc010ybi.1_Missense_Mutation_p.E542K	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	638	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		TCCTGCTCTTCCCCCTTCCCC	0.657													7	25					0	0	1	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50464038	50464038	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:50464038C>T	uc010ybh.1	-	2	322	c.231G>A	c.(229-231)CGG>CGA	p.R77R	SIGLEC11_uc010ybi.1_Silent_p.R77R	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	77	Ig-like V-type.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		TTGGGCTGGTCCGTCCTTTGA	0.602													12	39					0	0	1	0	0
ZNF473	25888	broad.mit.edu	37	19	50548821	50548821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:50548821C>T	uc002prn.2	+	5	1358	c.1121C>T	c.(1120-1122)ACC>ATC	p.T374I	ZNF473_uc002prm.2_Missense_Mutation_p.T374I|ZNF473_uc010ybo.1_Missense_Mutation_p.T362I	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	374	Interaction with SLBP/pre-mRNA complex.				histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		GCAAAAACTACCTCTGAGTGT	0.473													13	64					0	0	1	0	0
MYH14	79784	broad.mit.edu	37	19	50779269	50779269	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:50779269C>T	uc002prr.1	+	26	3413	c.3366C>T	c.(3364-3366)GCC>GCT	p.A1122A	MYH14_uc010enu.1_Silent_p.A1163A|MYH14_uc002prq.1_Silent_p.A1130A	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1122	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		AGGGTGGGGCCCGGGCCCAGC	0.652													4	25					0	0	1	0	0
MYBPC2	4606	broad.mit.edu	37	19	50951489	50951489	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:50951489G>A	uc002psf.2	+	13	1365	c.1314G>A	c.(1312-1314)CAG>CAA	p.Q438Q		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	438	Ig-like C2-type 4.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CAGAGAAACAGCTGGAGGTCC	0.393													5	20					0	0	1	0	0
LRRC4B	94030	broad.mit.edu	37	19	51022436	51022436	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:51022436G>A	uc002pss.2	-	3	671	c.534C>T	c.(532-534)TTC>TTT	p.F178F		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	178	LRR 4.|Extracellular (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		GCACGCGGTTGAAGGCGTAGG	0.672													7	38					0	0	1	0	0
LRRC4B	94030	broad.mit.edu	37	19	51022508	51022508	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:51022508G>A	uc002pss.2	-	3	599	c.462C>T	c.(460-462)TTC>TTT	p.F154F		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	154	LRR 3.|Extracellular (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		ACAGGTACTCGAAGGCCTGCG	0.657													8	50					0	0	1	0	0
GPR32	2854	broad.mit.edu	37	19	51274811	51274811	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:51274811C>T	uc010ycf.1	+	1	954	c.954C>T	c.(952-954)TTC>TTT	p.F318F		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	318	Helical; Name=7; (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		TCTACGTCTTCGTTGGCAGAG	0.542													7	111					0	0	1	0	0
KLK3	354	broad.mit.edu	37	19	51361760	51361760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:51361760C>T	uc002pts.1	+	4	580	c.539C>T	c.(538-540)TCC>TTC	p.S180F	KLK3_uc010ycj.1_Missense_Mutation_p.S139F|KLK3_uc002ptr.1_Missense_Mutation_p.S137F|KLK3_uc010eof.1_RNA	NM_001030047	NP_001025218	P07288	KLK3_HUMAN	prostate specific antigen isoform 3	180	Peptidase S1.				negative regulation of angiogenesis|proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00763)|GBM - Glioblastoma multiforme(134;0.0144)		CATGTTATTTCCAATGACGTG	0.537													6	142					0	0	1	0	0
KLK14	43847	broad.mit.edu	37	19	51582786	51582786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:51582786G>A	uc002pvs.1	-	5	653	c.434C>T	c.(433-435)CCC>CTC	p.P145L		NM_022046	NP_071329	Q9P0G3	KLK14_HUMAN	kallikrein 14 preproprotein	145	Peptidase S1.				epidermis morphogenesis|fertilization|negative regulation of G-protein coupled receptor protein signaling pathway|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis|seminal clot liquefaction	extracellular space	serine-type endopeptidase activity			skin(1)	1		all_neural(266;0.0199)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00422)		GACCTCAATGGGCCTGACTGC	0.612													4	36					0	0	1	0	0
KLK14	43847	broad.mit.edu	37	19	51585837	51585837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:51585837G>A	uc002pvs.1	-	3	302	c.83C>T	c.(82-84)GCT>GTT	p.A28V		NM_022046	NP_071329	Q9P0G3	KLK14_HUMAN	kallikrein 14 preproprotein	28					epidermis morphogenesis|fertilization|negative regulation of G-protein coupled receptor protein signaling pathway|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis|seminal clot liquefaction	extracellular space	serine-type endopeptidase activity			skin(1)	1		all_neural(266;0.0199)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00422)		CTTACCTATAGCCAGGACTTG	0.532													5	76					0	0	1	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51645855	51645855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:51645855C>T	uc002pvv.1	+	1	298	c.229C>T	c.(229-231)CCA>TCA	p.P77S	SIGLEC7_uc002pvw.1_Missense_Mutation_p.P77S|SIGLEC7_uc010eoq.1_RNA|SIGLEC7_uc010eor.1_Missense_Mutation_p.P77S	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	77	Ig-like V-type.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		CTGGAAGGCTCCAGTGGCCAC	0.567													12	81					0	0	1	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51647820	51647821	+	Missense_Mutation	DNP	CC	TT	TT	rs144612094	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:51647820_51647821CC>TT	uc002pvv.1	+	2	660_661	c.591_592CC>TT	c.(589-594)ACCCGC>ACTTGC	p.R198C	SIGLEC7_uc002pvw.1_Intron|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	198	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		CCTCCACCACCCGCTCCTCAGT	0.663													11	78					0	0	1	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51649261	51649261	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:51649261C>T	uc002pvv.1	+	4	979	c.910C>T	c.(910-912)CTG>TTG	p.L304L	SIGLEC7_uc002pvw.1_Silent_p.L211L|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	304	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		CTCAAACCCTCTGGTACTGGA	0.592													7	83					0	0	1	0	0
CD33	945	broad.mit.edu	37	19	51738506	51738506	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:51738506C>T	uc002pwa.2	+	5	880	c.840C>T	c.(838-840)TTC>TTT	p.F280F	CD33_uc010eos.1_Silent_p.F280F|CD33_uc010eot.1_Silent_p.F153F|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	280	Helical; (Potential).				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	TCATCTTCTTCATGTGAGCAT	0.567													12	38					0	0	1	0	0
CD33	945	broad.mit.edu	37	19	51742809	51742809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:51742809G>A	uc002pwa.2	+	7	1001	c.961G>A	c.(961-963)GAA>AAA	p.E321K	CD33_uc010eos.1_3'UTR|CD33_uc010eot.1_Missense_Mutation_p.E194K|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	321	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	TGGCCCCACTGAAACCTCAAG	0.522													6	39					0	0	1	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51919227	51919227	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:51919227C>T	uc002pwo.2	-	5	1565	c.949G>A	c.(949-951)GAT>AAT	p.D317N	SIGLEC10_uc002pwp.2_Missense_Mutation_p.D259N|SIGLEC10_uc002pwq.2_Missense_Mutation_p.D259N|SIGLEC10_uc002pwr.2_Missense_Mutation_p.D317N|SIGLEC10_uc010ycy.1_Intron|SIGLEC10_uc010ycz.1_Missense_Mutation_p.D269N|SIGLEC10_uc010eow.2_Missense_Mutation_p.D129N|SIGLEC10_uc002pws.1_Intron	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	317	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		CGCCCTGAATCCCCAGCCTTC	0.672													10	45					0	0	1	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52001352	52001352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52001352C>T	uc002pwx.1	-	5	1381	c.1325G>A	c.(1324-1326)GGG>GAG	p.G442E	SIGLEC12_uc002pww.1_Missense_Mutation_p.G324E|SIGLEC12_uc010eoy.1_Missense_Mutation_p.G169E	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	442	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GGTGAATTCCCCTTCATCCTT	0.617													5	46					0	0	1	0	0
SIGLEC6	946	broad.mit.edu	37	19	52033191	52033191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52033191C>T	uc002pwy.2	-	5	961	c.799G>A	c.(799-801)GGC>AGC	p.G267S	SIGLEC6_uc002pwz.2_Missense_Mutation_p.G251S|SIGLEC6_uc002pxa.2_Missense_Mutation_p.G267S|SIGLEC6_uc010ydb.1_Missense_Mutation_p.G204S|SIGLEC6_uc010ydc.1_Missense_Mutation_p.G267S|SIGLEC6_uc010eoz.1_Missense_Mutation_p.G245S|SIGLEC6_uc010epb.1_Missense_Mutation_p.G220S|SIGLEC6_uc010epa.1_Missense_Mutation_p.G256S	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	267	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		AGAGCCTGGCCCTCCAGGACA	0.602													15	117					0	0	1	0	0
SIGLEC14	100049587	broad.mit.edu	37	19	52149148	52149148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52149148G>A	uc002pxf.3	-	3	707	c.587C>T	c.(586-588)TCG>TTG	p.S196L		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	196	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		GGTGAGCTCCGAGGAGCGGGT	0.642													7	19					0	0	1	0	0
FPR1	2357	broad.mit.edu	37	19	52249761	52249761	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52249761G>A	uc002pxq.2	-	2	582	c.487C>T	c.(487-489)CGT>TGT	p.R163C		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	163	Extracellular (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	GTAGTCACACGAATGATAACT	0.537													7	51					0	0	1	0	0
FPR2	2358	broad.mit.edu	37	19	52272679	52272679	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52272679C>T	uc002pxr.2	+	2	813	c.768C>T	c.(766-768)CCC>CCT	p.P256P	FPR2_uc002pxs.3_Silent_p.P256P|FPR2_uc010epf.2_Silent_p.P256P	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	256	Helical; Name=6; (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						GTTGGTTTCCCTTTCAACTGG	0.488													7	37					0	0	1	0	0
FPR2	2358	broad.mit.edu	37	19	52272748	52272748	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52272748C>T	uc002pxr.2	+	2	882	c.837C>T	c.(835-837)ATC>ATT	p.I279I	FPR2_uc002pxs.3_Silent_p.I279I|FPR2_uc010epf.2_Silent_p.I279I	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	279	Extracellular (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						AGTACAAAATCATTGACATCC	0.498													10	52					0	0	1	0	0
FPR3	2359	broad.mit.edu	37	19	52327912	52327912	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52327912T>C	uc002pxt.1	+	2	1095	c.911T>C	c.(910-912)TTT>TCT	p.F304S		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	304	Helical; Name=7; (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						CTCTACGTCTTTATGGGTCGT	0.458													8	29					0	0	1	0	0
ZNF577	84765	broad.mit.edu	37	19	52376322	52376322	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52376322G>A	uc010yde.1	-	7	1312	c.921C>T	c.(919-921)TTC>TTT	p.F307F	ZNF577_uc010ydd.1_Intron|ZNF577_uc002pxx.3_Silent_p.F248F|ZNF577_uc002pxv.2_Silent_p.F300F|ZNF577_uc002pxw.2_Silent_p.F241F	NM_032679	NP_116068	Q9BSK1	ZN577_HUMAN	zinc finger protein 577 isoform a	307	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		ACTTAAAATAGAAGGTTCTTC	0.433													5	23					0	0	1	0	0
ZNF577	84765	broad.mit.edu	37	19	52381754	52381754	+	Silent	SNP	G	A	A	rs61747861	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52381754G>A	uc010yde.1	-	5	466	c.75C>T	c.(73-75)TTC>TTT	p.F25F	ZNF577_uc010ydd.1_RNA|ZNF577_uc002pxx.3_Silent_p.F25F|ZNF577_uc002pxv.2_Silent_p.F18F|ZNF577_uc002pxw.2_Silent_p.F18F	NM_032679	NP_116068	Q9BSK1	ZN577_HUMAN	zinc finger protein 577 isoform a	25	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		CCACATCTTCGAATGACAATG	0.458													4	30					0	0	1	0	0
ZNF613	79898	broad.mit.edu	37	19	52448549	52448549	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52448549C>T	uc002pxz.1	+	6	1836	c.1413C>T	c.(1411-1413)CTC>CTT	p.L471L	ZNF613_uc002pya.1_Silent_p.L435L	NM_001031721	NP_001026891	Q6PF04	ZN613_HUMAN	zinc finger protein 613 isoform 1	471	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.0183)		AGTCAGGTCTCATTAACCACC	0.428													7	30					0	0	1	0	0
ZNF615	284370	broad.mit.edu	37	19	52497791	52497791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52497791G>A	uc002pye.1	-	6	830	c.538C>T	c.(538-540)CCT>TCT	p.P180S	ZNF615_uc002pyf.1_Missense_Mutation_p.P191S|ZNF615_uc002pyg.1_Missense_Mutation_p.P72S|ZNF615_uc002pyh.1_Missense_Mutation_p.P191S|ZNF615_uc010epi.1_Missense_Mutation_p.P187S|ZNF615_uc010ydg.1_Missense_Mutation_p.P185S	NM_198480	NP_940882	Q8N8J6	ZN615_HUMAN	zinc finger protein 615	180					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00142)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		GCAATTGCAGGAAACTTCATT	0.378													5	53					0	0	1	0	0
ZNF432	9668	broad.mit.edu	37	19	52537686	52537686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52537686G>A	uc002pyk.2	-	5	1564	c.1246C>T	c.(1246-1248)CTT>TTT	p.L416F		NM_014650	NP_055465	O94892	ZN432_HUMAN	zinc finger protein 432	416	C2H2-type 8.		L -> V (in a breast cancer sample; somatic mutation).		regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.L416V(1)		breast(2)|pancreas(1)	3		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.0054)|OV - Ovarian serous cystadenocarcinoma(262;0.0182)		TGTACAATAAGATTACTCTTC	0.398													13	77					0	0	1	0	0
PPP2R1A	5518	broad.mit.edu	37	19	52716050	52716050	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52716050C>T	uc002pyp.2	+	5	774	c.615C>T	c.(613-615)ATC>ATT	p.I205I	PPP2R1A_uc010ydk.1_Silent_p.I150I|PPP2R1A_uc010epm.1_Silent_p.I245I|PPP2R1A_uc002pyq.2_Silent_p.I26I	NM_014225	NP_055040	P30153	2AAA_HUMAN	alpha isoform of regulatory subunit A, protein	205	PP2A subunit B binding.|SV40 small T antigen binding.|HEAT 6.|Polyoma small and medium T antigens Binding.				ceramide metabolic process|chromosome segregation|G2/M transition of mitotic cell cycle|inactivation of MAPK activity|induction of apoptosis|negative regulation of cell growth|negative regulation of tyrosine phosphorylation of Stat3 protein|protein complex assembly|protein dephosphorylation|regulation of cell adhesion|regulation of cell differentiation|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|membrane|microtubule cytoskeleton|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction	antigen binding|protein heterodimerization activity|protein phosphatase type 2A regulator activity			endometrium(31)|ovary(28)|lung(2)|breast(2)|skin(1)|kidney(1)|pancreas(1)	66				GBM - Glioblastoma multiforme(134;0.00456)|OV - Ovarian serous cystadenocarcinoma(262;0.015)		AGAGTGAGATCATCCCCATGT	0.597			Mis		clear cell ovarian carcinoma								18	128					0	0	1	0	0
PPP2R1A	5518	broad.mit.edu	37	19	52719261	52719261	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52719261C>T	uc002pyp.2	+	8	1086	c.927C>T	c.(925-927)TTC>TTT	p.F309F	PPP2R1A_uc010ydk.1_Silent_p.F254F|PPP2R1A_uc010epm.1_Silent_p.F349F|PPP2R1A_uc002pyq.2_Silent_p.F130F	NM_014225	NP_055040	P30153	2AAA_HUMAN	alpha isoform of regulatory subunit A, protein	309	PP2A subunit B binding.|HEAT 8.|Polyoma small and medium T antigens Binding.				ceramide metabolic process|chromosome segregation|G2/M transition of mitotic cell cycle|inactivation of MAPK activity|induction of apoptosis|negative regulation of cell growth|negative regulation of tyrosine phosphorylation of Stat3 protein|protein complex assembly|protein dephosphorylation|regulation of cell adhesion|regulation of cell differentiation|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|membrane|microtubule cytoskeleton|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction	antigen binding|protein heterodimerization activity|protein phosphatase type 2A regulator activity			endometrium(31)|ovary(28)|lung(2)|breast(2)|skin(1)|kidney(1)|pancreas(1)	66				GBM - Glioblastoma multiforme(134;0.00456)|OV - Ovarian serous cystadenocarcinoma(262;0.015)		CCACAGAGTTCTGTGAAAACC	0.542			Mis		clear cell ovarian carcinoma								7	50					0	0	1	0	0
ZNF528	84436	broad.mit.edu	37	19	52918850	52918850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:52918850C>T	uc002pzh.2	+	7	1171	c.745C>T	c.(745-747)CTC>TTC	p.L249F	ZNF528_uc002pzi.2_Missense_Mutation_p.L16F	NM_032423	NP_115799	Q3MIS6	ZN528_HUMAN	zinc finger protein 528	249	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(134;0.00249)|OV - Ovarian serous cystadenocarcinoma(262;0.00817)		ATGTGGCAAGCTCTTCAGTAG	0.403													6	38					0	0	1	0	0
ZNF578	147660	broad.mit.edu	37	19	53008018	53008018	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53008018G>A	uc002pzp.3	+	5	418	c.174G>A	c.(172-174)AGG>AGA	p.R58R		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	Error:Variant_position_missing_in_Q96N58_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		AGAACTACAGGAACCTGGAGG	0.478													18	87					0	0	1	0	0
ZNF578	147660	broad.mit.edu	37	19	53013914	53013914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53013914G>A	uc002pzp.3	+	6	524	c.280G>A	c.(280-282)GAA>AAA	p.E94K		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		GCAAAGACATGAAAGTTATCA	0.383													9	86					0	0	1	0	0
ZNF578	147660	broad.mit.edu	37	19	53014622	53014622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53014622C>T	uc002pzp.3	+	6	1232	c.988C>T	c.(988-990)CTT>TTT	p.L330F		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	105	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		CAAGTCATCCCTTACATGCCA	0.428													11	57					0	0	1	0	0
ZNF808	388558	broad.mit.edu	37	19	53057439	53057439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53057439G>A	uc010epq.1	+	5	1447	c.1270G>A	c.(1270-1272)GAG>AAG	p.E424K	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	424					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		TCATACTGGAGAGAAACCTTA	0.358													4	25					0	0	1	0	0
ZNF808	388558	broad.mit.edu	37	19	53057934	53057934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53057934C>T	uc010epq.1	+	5	1942	c.1765C>T	c.(1765-1767)CAT>TAT	p.H589Y	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	589	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		TCGTAGACTTCATACTGGAGA	0.368													5	78					0	0	1	0	0
ZNF611	81856	broad.mit.edu	37	19	53209878	53209878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53209878G>A	uc002pzz.2	-	7	747	c.430C>T	c.(430-432)CAC>TAC	p.H144Y	ZNF611_uc010eqc.2_Missense_Mutation_p.H74Y|ZNF611_uc010ydo.1_Missense_Mutation_p.H74Y|ZNF611_uc010ydr.1_Missense_Mutation_p.H75Y|ZNF611_uc010ydp.1_Missense_Mutation_p.H144Y|ZNF611_uc010ydq.1_Missense_Mutation_p.H144Y|ZNF611_uc002qaa.3_Missense_Mutation_p.H74Y	NM_030972	NP_112234	Q8N823	ZN611_HUMAN	zinc finger protein 611 isoform a	144					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.0233)|GBM - Glioblastoma multiforme(134;0.04)		GCATGCCTGTGATCATGTTGG	0.393													10	85					0	0	1	0	0
ZNF468	90333	broad.mit.edu	37	19	53344539	53344539	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53344539G>A	uc002qaf.2	-	4	1159	c.1008C>T	c.(1006-1008)TTC>TTT	p.F336F	ZNF468_uc002qae.2_Silent_p.F283F	NM_001008801	NP_001008801	Q5VIY5	ZN468_HUMAN	zinc finger protein ZNF468 isoform 2	336	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0358)		AATTATATGCGAAAGCCTCAT	0.363													6	30					0	0	1	0	0
ZNF816A	125893	broad.mit.edu	37	19	53453521	53453521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53453521G>A	uc002qal.1	-	5	1808	c.1507C>T	c.(1507-1509)CAT>TAT	p.H503Y	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Missense_Mutation_p.H487Y	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	503	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		TCTCCAGCATGAAGTCTATGA	0.398													5	50					0	0	1	0	0
ZNF816A	125893	broad.mit.edu	37	19	53454121	53454121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53454121G>A	uc002qal.1	-	5	1208	c.907C>T	c.(907-909)CAT>TAT	p.H303Y	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Missense_Mutation_p.H287Y	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	303	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		AGTCTACGATGGCATACAAGG	0.418													7	94					0	0	1	0	0
ZNF415	55786	broad.mit.edu	37	19	53612007	53612007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53612007G>A	uc002qax.2	-	7	1784	c.1435C>T	c.(1435-1437)CGG>TGG	p.R479W	ZNF415_uc002qat.2_Missense_Mutation_p.R443W|ZNF415_uc002qaw.2_Missense_Mutation_p.R431W|ZNF415_uc010yds.1_Missense_Mutation_p.R431W|ZNF415_uc010ydt.1_Missense_Mutation_p.R431W|ZNF415_uc002qau.2_Missense_Mutation_p.R418W|ZNF415_uc002qav.2_Missense_Mutation_p.R443W|ZNF415_uc002qba.2_Missense_Mutation_p.R201W|ZNF415_uc002qay.2_Missense_Mutation_p.R418W|ZNF415_uc002qaz.2_Missense_Mutation_p.R479W	NR_028343		Q09FC8	ZN415_HUMAN	RecName: Full=Zinc finger protein 415;	479	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.0191)		TGAACTCTCCGATGACTCGCA	0.423													5	63					0	0	1	0	0
ZNF415	55786	broad.mit.edu	37	19	53612707	53612707	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53612707G>A	uc002qax.2	-	7	1084	c.735C>T	c.(733-735)TTC>TTT	p.F245F	ZNF415_uc002qat.2_Silent_p.F209F|ZNF415_uc002qaw.2_Silent_p.F197F|ZNF415_uc010yds.1_Silent_p.F197F|ZNF415_uc010ydt.1_Silent_p.F197F|ZNF415_uc002qau.2_Silent_p.F184F|ZNF415_uc002qav.2_Silent_p.F209F|ZNF415_uc002qba.2_5'UTR|ZNF415_uc002qay.2_Silent_p.F184F|ZNF415_uc002qaz.2_Silent_p.F245F	NR_028343		Q09FC8	ZN415_HUMAN	RecName: Full=Zinc finger protein 415;	245					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.0191)		AAGAACAGATGAAATCAGTCC	0.378													8	48					0	0	1	0	0
ZNF665	79788	broad.mit.edu	37	19	53668863	53668863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53668863C>T	uc010eqm.1	-	4	980	c.880G>A	c.(880-882)GAA>AAA	p.E294K		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	229	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		TTGCCACATTCCTTACATTTG	0.408													8	152					0	0	1	0	0
VN1R2	317701	broad.mit.edu	37	19	53762161	53762161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53762161G>A	uc002qbi.2	+	1	617	c.533G>A	c.(532-534)GGA>GAA	p.G178E		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	178	Helical; Name=3; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		GTGTCCATTGGAAGCACCTGC	0.468													6	26					0	0	1	0	0
VN1R2	317701	broad.mit.edu	37	19	53762452	53762452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53762452G>A	uc002qbi.2	+	1	908	c.824G>A	c.(823-825)GGG>GAG	p.G275E		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	275	Helical; Name=5; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		TTGTGTCTGGGGCTCATGCTC	0.458													6	137					0	0	1	0	0
VN1R2	317701	broad.mit.edu	37	19	53762528	53762528	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53762528G>A	uc002qbi.2	+	1	984	c.900G>A	c.(898-900)AGG>AGA	p.R300R		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	300	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		ACATCTGTAGGAACAATCTCT	0.493													20	131					0	0	1	0	0
BIRC8	112401	broad.mit.edu	37	19	53793075	53793075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53793075C>T	uc002qbk.2	-	1	1801	c.553G>A	c.(553-555)GAG>AAG	p.E185K		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	185					apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		AGCTTCTCCTCTTGCAGACGC	0.428													7	49					0	0	1	0	0
BIRC8	112401	broad.mit.edu	37	19	53793153	53793153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53793153C>T	uc002qbk.2	-	1	1723	c.475G>A	c.(475-477)GAC>AAC	p.D159N		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	159					apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		TCTGTAGTGTCTTTCTGAGCG	0.418													12	74					0	0	1	0	0
ZNF845	91664	broad.mit.edu	37	19	53854452	53854452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53854452C>T	uc010ydv.1	+	4	641	c.524C>T	c.(523-525)TCA>TTA	p.S175L	ZNF845_uc010ydw.1_Missense_Mutation_p.S175L	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	175					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCGTTGGTTTCAACATCCCAA	0.388													6	55					0	0	1	0	0
ZNF845	91664	broad.mit.edu	37	19	53854720	53854720	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:53854720T>A	uc010ydv.1	+	4	909	c.792T>A	c.(790-792)TGT>TGA	p.C264*	ZNF845_uc010ydw.1_Nonsense_Mutation_p.C264*	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	264	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATCGTAGATGTCACACTGGCA	0.398													4	22					0	0	1	0	0
ZNF331	55422	broad.mit.edu	37	19	54080049	54080049	+	Missense_Mutation	SNP	C	T	T	rs143490707		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:54080049C>T	uc002qbx.1	+	7	1669	c.235C>T	c.(235-237)CTT>TTT	p.L79F	ZNF331_uc002qby.1_Missense_Mutation_p.L79F|ZNF331_uc002qbz.1_Missense_Mutation_p.L79F|ZNF331_uc002qca.1_Missense_Mutation_p.L79F|ZNF331_uc010eqr.1_Missense_Mutation_p.L79F|ZNF331_uc002qcb.1_Missense_Mutation_p.L79F|ZNF331_uc002qcc.1_Missense_Mutation_p.L79F|ZNF331_uc002qcd.1_Missense_Mutation_p.L79F	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	79					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.L79F(1)		skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		AAGTAAATCCCTTGGCCGTAA	0.393			T	?	follicular thyroid adenoma								5	43					0	0	1	0	0
ZNF331	55422	broad.mit.edu	37	19	54080363	54080363	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:54080363G>A	uc002qbx.1	+	7	1983	c.549G>A	c.(547-549)GGG>GGA	p.G183G	ZNF331_uc002qby.1_Silent_p.G183G|ZNF331_uc002qbz.1_Silent_p.G183G|ZNF331_uc002qca.1_Silent_p.G183G|ZNF331_uc010eqr.1_Silent_p.G183G|ZNF331_uc002qcb.1_Silent_p.G183G|ZNF331_uc002qcc.1_Silent_p.G183G|ZNF331_uc002qcd.1_Silent_p.G183G	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	183					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		TTCATACTGGGGAGAAGCCCT	0.413			T	?	follicular thyroid adenoma								9	95					0	0	1	0	0
MIR1283-1	100302265	broad.mit.edu	37	19	54191797	54191797	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:54191797C>T	hsa-mir-1283-1|MI0003832	+			c.63C>T			MIR520A_hsa-mir-520a|MI0003149_5'Flank																	0						AAAGCGCTTCCCTTTTGAGGG	0.433													6	25					0	0	1	0	0
MIR516B1	574490	broad.mit.edu	37	19	54240169	54240169	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:54240169C>T	hsa-mir-516b-1|MI0003172	+			c.71C>T			MIR518A2_hsa-mir-518a-2|MI0003173_5'Flank																	0						TGCTTCCTTTCAGAGGGTTAC	0.423													5	49					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54313362	54313362	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:54313362G>A	uc002qch.3	-	3	1771	c.1551C>T	c.(1549-1551)TTC>TTT	p.F517F	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Silent_p.F517F|NLRP12_uc002qcj.3_Silent_p.F517F|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.F517F	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	517	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		AGAATTCCTGGAAACTCAAGT	0.537													19	109					0	0	1	0	0
PRKCG	5582	broad.mit.edu	37	19	54394986	54394986	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:54394986G>A	uc002qcq.1	+	6	870	c.588G>A	c.(586-588)GTG>GTA	p.V196V	PRKCG_uc010eqz.1_Silent_p.V196V|PRKCG_uc010yef.1_Silent_p.V196V|PRKCG_uc010yeg.1_Silent_p.V196V|PRKCG_uc010yeh.1_Silent_p.V83V	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	196	C2.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		ATCCCTATGTGAAACTGAAGC	0.517													12	145					0	0	1	0	0
CNOT3	4849	broad.mit.edu	37	19	54647226	54647226	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:54647226C>T	uc002qdj.1	+	4	453	c.142C>T	c.(142-144)CTA>TTA	p.L48L	CNOT3_uc010yel.1_Silent_p.L48L|CNOT3_uc002qdi.2_5'UTR|CNOT3_uc002qdk.1_Silent_p.L48L|CNOT3_uc010ere.1_5'Flank	NM_014516	NP_055331	O75175	CNOT3_HUMAN	CCR4-NOT transcription complex, subunit 3	48					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					TGAGGCTGACCTAAAGAAGGA	0.418													12	58					0	0	1	0	0
LILRA6	79168	broad.mit.edu	37	19	54744717	54744717	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:54744717G>A	uc002qeu.1	-	5	1069	c.945C>T	c.(943-945)ATC>ATT	p.I315I	LILRB3_uc002qeh.1_Intron|LILRB3_uc002qeg.1_Intron|LILRB3_uc002qei.1_Intron|LILRA6_uc002qek.1_Silent_p.I315I|LILRB3_uc010erh.1_Intron|LILRB3_uc002qej.1_Intron|LILRA6_uc002qel.1_Silent_p.I315I|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_Silent_p.I315I|LILRB3_uc002qep.1_Intron|LILRB3_uc002qeq.1_Silent_p.I315I|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Intron|LILRA6_uc010yep.1_Silent_p.I315I|LILRA6_uc010yeq.1_Silent_p.I315I|LILRA6_uc002qet.3_RNA|LILRA6_uc002qev.1_Silent_p.I176I	NM_024318	NP_077294	Q6PI73	LIRA6_HUMAN	leukocyte immunoglobulin-like receptor,	315	Extracellular (Potential).					integral to membrane	receptor activity			skin(2)	2	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CTGCCATCAGGATGTTCAGGG	0.692													6	83					0	0	1	0	0
LILRB5	10990	broad.mit.edu	37	19	54760447	54760447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:54760447G>A	uc002qex.2	-	3	371	c.260C>T	c.(259-261)TCC>TTC	p.S87F	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.S87F|LILRB5_uc002qey.2_Missense_Mutation_p.S87F|LILRB5_uc002qez.2_Missense_Mutation_p.S87F|LILRB5_uc002qfa.1_Missense_Mutation_p.S77F|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	87	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ATACACCGTGGATGGAATGTG	0.607													23	203					0	0	1	0	0
LILRA5	353514	broad.mit.edu	37	19	54818742	54818742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:54818742C>T	uc002qfe.2	-	7	976	c.856G>A	c.(856-858)GAT>AAT	p.D286N	LILRA5_uc002qff.2_Missense_Mutation_p.D274N	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	286	Helical; (Potential).				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CTGTGCCAATCCTGAAATATC	0.527													5	72					0	0	1	0	0
LILRA5	353514	broad.mit.edu	37	19	54818764	54818764	+	Silent	SNP	G	A	A	rs145397246		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:54818764G>A	uc002qfe.2	-	7	954	c.834C>T	c.(832-834)GTC>GTT	p.V278V	LILRA5_uc002qff.2_Silent_p.V266V	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	278	Helical; (Potential).				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GAATCCCAAGGACCACCAGGA	0.532													9	61					0	0	1	0	0
LILRA4	23547	broad.mit.edu	37	19	54848165	54848165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:54848165G>A	uc002qfj.2	-	6	1259	c.1202C>T	c.(1201-1203)TCC>TTC	p.S401F	LILRA4_uc002qfi.2_Missense_Mutation_p.S335F	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	401	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		GTAGGGGTTGGAGCTGCGTGA	0.597													17	80					0	0	1	0	0
LAIR1	3903	broad.mit.edu	37	19	54871658	54871658	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:54871658G>A	uc002qfk.1	-	4	696	c.386C>T	c.(385-387)TCC>TTC	p.S129F	LAIR1_uc002qfl.1_Intron|LAIR1_uc002qfm.1_Missense_Mutation_p.S128F|LAIR1_uc002qfn.1_Intron|LAIR1_uc010yex.1_Missense_Mutation_p.S122F|LAIR1_uc002qfo.2_Missense_Mutation_p.S111F	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like	129	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		TGTGTCCGGGGAGTCCGGGCC	0.622													4	58					0	0	1	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55044985	55044985	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55044985G>A	uc010yfa.1	+	3		c.211G>A			KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA	NR_026716				Homo sapiens mRNA for FLJ00060 protein, partial cds.											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		CAGCCTGGCCGAGCCCTGTGG	0.572													5	45					0	0	1	0	0
LILRA2	11027	broad.mit.edu	37	19	55086314	55086314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55086314G>A	uc002qgg.3	+	4	558	c.469G>A	c.(469-471)GAA>AAA	p.E157K	LILRA2_uc010ern.2_Missense_Mutation_p.E157K|LILRA2_uc002qgf.2_Missense_Mutation_p.E157K|LILRA2_uc010yfe.1_Missense_Mutation_p.E157K|LILRA2_uc010yff.1_Missense_Mutation_p.E145K|LILRA2_uc010ero.2_Missense_Mutation_p.E145K|LILRA2_uc010yfg.1_Missense_Mutation_p.E157K	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	157	Extracellular (Potential).|Ig-like C2-type 2.				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		TCTGTGTAAGGAAGGAGAAGA	0.602													24	89					0	0	1	0	0
LILRA2	11027	broad.mit.edu	37	19	55086318	55086318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55086318G>A	uc002qgg.3	+	4	562	c.473G>A	c.(472-474)GGA>GAA	p.G158E	LILRA2_uc010ern.2_Missense_Mutation_p.G158E|LILRA2_uc002qgf.2_Missense_Mutation_p.G158E|LILRA2_uc010yfe.1_Missense_Mutation_p.G158E|LILRA2_uc010yff.1_Missense_Mutation_p.G146E|LILRA2_uc010ero.2_Missense_Mutation_p.G146E|LILRA2_uc010yfg.1_Missense_Mutation_p.G158E	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	158	Extracellular (Potential).|Ig-like C2-type 2.				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		TGTAAGGAAGGAGAAGATGAA	0.602													7	105					0	0	1	0	0
LILRA1	11024	broad.mit.edu	37	19	55106623	55106623	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55106623G>A	uc002qgh.1	+	5	599	c.417G>A	c.(415-417)GGG>GGA	p.G139G	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Silent_p.G139G	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	139	Ig-like C2-type 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		CCTCAGGAGGGAACGTGACCC	0.542													9	109					0	0	1	0	0
LILRB1	10859	broad.mit.edu	37	19	55143576	55143576	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55143576C>T	uc002qgj.2	+	6	889	c.549C>T	c.(547-549)TCC>TCT	p.S183S	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Silent_p.S183S|LILRB1_uc002qgk.2_Silent_p.S183S|LILRB1_uc002qgm.2_Silent_p.S183S|LILRB1_uc010erq.2_Silent_p.S183S|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	183	Ig-like C2-type 2.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		CCATCTTCTCCGTGGGCCCCG	0.577										HNSCC(37;0.09)			15	96					0	0	1	0	0
LILRB1	10859	broad.mit.edu	37	19	55146142	55146142	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55146142C>T	uc002qgj.2	+	11	1751	c.1411C>T	c.(1411-1413)CTA>TTA	p.L471L	LILRB1_uc010erp.1_Silent_p.L86L|LILRB1_uc002qgl.2_Silent_p.L471L|LILRB1_uc002qgk.2_Silent_p.L472L|LILRB1_uc002qgm.2_Silent_p.L472L|LILRB1_uc010erq.2_Silent_p.L455L|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	471	Helical; (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		GGCCGTCAtcctactgctcct	0.433										HNSCC(37;0.09)			5	31					0	0	1	0	0
LILRB4	11006	broad.mit.edu	37	19	55179188	55179188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55179188G>A	uc002qgp.2	+	11	1506	c.1144G>A	c.(1144-1146)GAA>AAA	p.E382K	LILRB4_uc002qgq.2_Missense_Mutation_p.E381K|LILRB4_uc002qgr.2_Missense_Mutation_p.E424K|LILRB4_uc010ert.2_Missense_Mutation_p.E423K|LILRB4_uc010eru.2_Missense_Mutation_p.E412K	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	382	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		ACTGTCTGGGGAATTCCTGGA	0.592													4	24					0	0	1	0	0
KIR2DL3	3804	broad.mit.edu	37	19	55263163	55263163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55263163C>T	uc002qgv.2	+	6	796	c.778C>T	c.(778-780)CTC>TTC	p.L260F	KIR2DL3_uc002qgx.2_Missense_Mutation_p.L260F|KIR2DL3_uc002qgy.2_Missense_Mutation_p.L162F|KIR2DL3_uc010erw.1_Missense_Mutation_p.L260F|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron	NM_015868	NP_056952	P43628	KI2L3_HUMAN	killer cell immunoglobulin-like receptor, two	260	Helical; (Potential).				immune response|regulation of immune response	integral to plasma membrane	antigen binding|protein binding|receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		cttcatcctcctcctcttctt	0.413													6	78					0	0	1	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55286736	55286736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55286736G>A	uc002qhb.1	+	4	528	c.490G>A	c.(490-492)GGG>AGG	p.G164R	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_RNA|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.G164R	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	164	Extracellular (Potential).|Ig-like C2-type 2.				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		ATCCAGGGAAGGGGAGGCCCA	0.612													5	110					0	0	1	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55286868	55286868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55286868G>A	uc002qhb.1	+	4	660	c.622G>A	c.(622-624)GAG>AAG	p.E208K	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_RNA|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.E208K	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	208	Extracellular (Potential).				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CTCTCCATACGAGTGGTCAAA	0.552													24	152					0	0	1	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55330035	55330035	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55330035C>T	uc002qhk.3	+	3	399	c.336C>T	c.(334-336)CCC>CCT	p.P112P	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Silent_p.P54P|KIR3DL1_uc010esf.2_Intron|KIR3DL1_uc010yfo.1_Silent_p.P54P|KIR3DL1_uc002qhl.3_Silent_p.P112P	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	112	Extracellular (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		CCAGCAACCCCGTGGTGATCA	0.607													5	93					0	0	1	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55331226	55331226	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55331226G>A	uc002qhk.3	+	4	477	c.414G>A	c.(412-414)GAG>GAA	p.E138E	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Silent_p.E80E|KIR3DL1_uc010esf.2_Silent_p.E43E|KIR3DL1_uc010yfo.1_Silent_p.E80E|KIR3DL1_uc002qhl.3_Silent_p.E138E	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	138	Extracellular (Potential).|Ig-like C2-type 2.				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		AATCAGGAGAGAGAGTCATCC	0.488													10	78					0	0	1	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55333102	55333102	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55333102C>T	uc002qhk.3	+	5	801	c.738C>T	c.(736-738)TCC>TCT	p.S246S	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Silent_p.S188S|KIR3DL1_uc010esf.2_Silent_p.S151S|KIR3DL1_uc010yfo.1_Silent_p.S188S|KIR3DL1_uc002qhl.3_Silent_p.S246S	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	246	Extracellular (Potential).|Ig-like C2-type 3.				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		CCTGTAGCTCCCGGAGCTCCT	0.572													7	57					0	0	1	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55333131	55333131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55333131C>T	uc002qhk.3	+	5	830	c.767C>T	c.(766-768)TCC>TTC	p.S256F	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Missense_Mutation_p.S198F|KIR3DL1_uc010esf.2_Missense_Mutation_p.S161F|KIR3DL1_uc010yfo.1_Missense_Mutation_p.S198F|KIR3DL1_uc002qhl.3_Missense_Mutation_p.S256F	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	256	Extracellular (Potential).|Ig-like C2-type 3.				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		TACCATCTATCCAGGGAGGGG	0.607													9	36					0	0	1	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55341563	55341563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55341563G>A	uc002qhk.3	+	9	1231	c.1168G>A	c.(1168-1170)GAA>AAA	p.E390K	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Missense_Mutation_p.E315K|KIR3DL1_uc010esf.2_Missense_Mutation_p.E295K|KIR3DL1_uc010yfo.1_Missense_Mutation_p.E332K|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_5'Flank|KIR2DS4_uc002qhm.1_5'Flank	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	390	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		GGACTCTGATGAACAAGACCC	0.522													22	234					0	0	1	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55349192	55349192	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55349192G>A	uc002qhm.1	+	3	278	c.232G>A	c.(232-234)GAT>AAT	p.D78N	KIR2DS4_uc010yfj.1_Missense_Mutation_p.D71N|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Missense_Mutation_p.D78N|KIR2DS4_uc002qhn.1_Missense_Mutation_p.D25N	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	78	Extracellular (Potential).|Ig-like C2-type 1.					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		AGAGCACCATGATGGGGTTTC	0.498													13	159					0	0	1	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55349276	55349276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55349276C>T	uc002qhm.1	+	3	362	c.316C>T	c.(316-318)CAC>TAC	p.H106Y	KIR2DS4_uc010yfj.1_Missense_Mutation_p.H99Y|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Missense_Mutation_p.H106Y|KIR2DS4_uc002qhn.1_Missense_Mutation_p.H53Y	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	106	Extracellular (Potential).|Ig-like C2-type 1.					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		TTCTGTTCCTCACTCCCCCTA	0.512													38	271					0	0	1	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55349300	55349300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55349300C>T	uc002qhm.1	+	3	386	c.340C>T	c.(340-342)CCC>TCC	p.P114S	KIR2DS4_uc010yfj.1_Missense_Mutation_p.P107S|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Missense_Mutation_p.P114S|KIR2DS4_uc002qhn.1_Missense_Mutation_p.P61S	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	114	Extracellular (Potential).					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		GTTGTCAGCTCCCAGTGACCC	0.512													41	276					0	0	1	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55350983	55350983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55350983G>A	uc002qhm.1	+	5	539	c.493G>A	c.(493-495)GAG>AAG	p.E165K	KIR2DS4_uc010yfj.1_Silent_p.G150G|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Silent_p.G157G|KIR2DS4_uc002qhn.1_Intron	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	165	Extracellular (Potential).|Ig-like C2-type 2.					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CAGGGAAGGGGAGGCCCATGA	0.597													5	154					0	0	1	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55378053	55378053	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55378053G>A	uc002qhl.3	+	9	1298	c.1235G>A	c.(1234-1236)AGT>AAT	p.S412N	KIR3DL2_uc010esh.2_Missense_Mutation_p.S395N|KIR3DL2_uc002qho.3_Missense_Mutation_p.S412N			P43629	KI3L1_HUMAN	SubName: Full=KIR3DS1;	412	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		AGAAAAATCAGTCGCCCTTCT	0.517													18	205					0	0	1	0	0
NCR1	9437	broad.mit.edu	37	19	55420748	55420748	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55420748G>A	uc002qib.2	+	4	538	c.500G>A	c.(499-501)GGA>GAA	p.G167E	NCR1_uc002qic.2_Missense_Mutation_p.G167E|NCR1_uc002qie.2_Missense_Mutation_p.G167E|NCR1_uc002qid.2_Missense_Mutation_p.G72E|NCR1_uc002qif.2_Missense_Mutation_p.G72E|NCR1_uc010esj.2_Missense_Mutation_p.G60E	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	167	Extracellular (Potential).|Ig-like 2.				cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity	p.G167R(1)		large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		GTACAGCGCGGATACGGGAAG	0.567													7	79					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55501499	55501499	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55501499G>A	uc002qij.2	+	9	2562	c.2476G>A	c.(2476-2478)GAG>AAG	p.E826K	NLRP2_uc010yfp.1_Missense_Mutation_p.E803K|NLRP2_uc010esn.2_Missense_Mutation_p.E802K|NLRP2_uc010eso.2_Missense_Mutation_p.E823K|NLRP2_uc010esp.2_Missense_Mutation_p.E804K	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	826	LRR 1.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		GCTTCTGGATGAGGGTGCTAA	0.517													5	61					0	0	1	0	0
SYT5	6861	broad.mit.edu	37	19	55689722	55689722	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55689722G>A	uc002qjm.1	-	2	1154	c.94C>T	c.(94-96)CTG>TTG	p.L32L	SYT5_uc002qjp.2_Intron|SYT5_uc002qjn.1_Silent_p.L32L|SYT5_uc002qjo.1_Silent_p.L32L	NM_003180	NP_003171	O00445	SYT5_HUMAN	synaptotagmin V	32	Helical; (Potential).				energy reserve metabolic process|regulation of insulin secretion|synaptic transmission	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane	metal ion binding|transporter activity				0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		ATGGTGGCCAGGGCCCAGGGG	0.607													3	29					0	0	1	0	0
BRSK1	84446	broad.mit.edu	37	19	55820066	55820066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55820066C>T	uc002qkg.2	+	18	2426	c.2149C>T	c.(2149-2151)CAT>TAT	p.H717Y	BRSK1_uc002qkf.2_Missense_Mutation_p.H733Y|BRSK1_uc002qkh.2_Missense_Mutation_p.H412Y	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	717					establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		CCTGAGCACTCATGACCAGCC	0.398													5	21					0	0	1	0	0
TMEM190	147744	broad.mit.edu	37	19	55888983	55888983	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:55888983C>T	uc002qkt.1	+	3	135	c.117C>T	c.(115-117)GAC>GAT	p.D39D		NM_139172	NP_631911	Q8WZ59	TM190_HUMAN	transmembrane protein 190 precursor	39	P-type.|Extracellular (Potential).					integral to membrane					0	Breast(117;0.191)		BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		ACATATGGGACCGGGAGAGCT	0.632													10	160					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56223854	56223854	+	Silent	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:56223854T>A	uc002qly.2	-	7	2632	c.2604A>T	c.(2602-2604)ATA>ATT	p.I868I		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	868	LRR 5.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		CAGTGTCTCCTATTTCATTAT	0.438													4	36					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56307582	56307582	+	Missense_Mutation	SNP	C	T	T	rs116279591	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:56307582C>T	uc010ygf.1	-	8	2917	c.2206G>A	c.(2206-2208)GAA>AAA	p.E736K	NLRP11_uc002qlz.2_Missense_Mutation_p.E583K|NLRP11_uc002qmb.2_Missense_Mutation_p.E637K|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	736							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GCGATTTCTTCACATTCGCTG	0.463													9	60					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56370475	56370475	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:56370475C>T	uc002qmd.3	+	3	2138	c.1716C>T	c.(1714-1716)CTC>CTT	p.L572L	NLRP4_uc002qmf.2_Silent_p.L497L|NLRP4_uc010etf.2_Silent_p.L403L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	572							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CAGTGAACCTCCTCCAAGAAG	0.468													4	49					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56373378	56373378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:56373378C>T	uc002qmd.3	+	5	2461	c.2039C>T	c.(2038-2040)TCT>TTT	p.S680F	NLRP4_uc002qmf.2_Missense_Mutation_p.S605F|NLRP4_uc010etf.2_Missense_Mutation_p.S511F	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	680							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GTTTCCTTTTCTGGCCAGAGT	0.433													6	53					0	0	1	0	0
NLRP4	147945	broad.mit.edu	37	19	56379215	56379215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:56379215G>A	uc002qmd.3	+	6	2749	c.2327G>A	c.(2326-2328)AGC>AAC	p.S776N	NLRP4_uc002qmf.2_Missense_Mutation_p.S701N|NLRP4_uc010etf.2_Intron	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	776	LRR 4.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GCCCTGTGCAGCCCAGACACG	0.537													9	44					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56424395	56424395	+	Missense_Mutation	SNP	G	A	A	rs137923694		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:56424395G>A	uc010ygg.1	-	5	813	c.788C>T	c.(787-789)TCC>TTC	p.S263F		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	263	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GAAAACATAGGAGAACCTTTG	0.468													6	40					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56467272	56467272	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:56467272C>T	uc002qmh.2	+	3	1919	c.1848C>T	c.(1846-1848)ATC>ATT	p.I616I	NLRP8_uc010etg.2_Silent_p.I616I	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	616						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TGCATGAAATCCGGGAGGAAG	0.443													4	39					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56481936	56481936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:56481936G>A	uc002qmh.2	+	6	2479	c.2408G>A	c.(2407-2409)AGA>AAA	p.R803K	NLRP8_uc010etg.2_Missense_Mutation_p.R803K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	803						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GCCACCCCTAGAATTTGGACT	0.473													11	111					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56515251	56515251	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:56515251C>T	uc002qmj.2	+	2	232	c.232C>T	c.(232-234)CAG>TAG	p.Q78*	NLRP5_uc002qmi.2_Nonsense_Mutation_p.Q78*	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	78	DAPIN.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GGAAGAATTTCAGACATTCAA	0.438													11	51					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56515437	56515437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:56515437G>A	uc002qmj.2	+	2	418	c.418G>A	c.(418-420)GAG>AAG	p.E140K	NLRP5_uc002qmi.2_Missense_Mutation_p.E140K	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	140	DAPIN.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		AACCCTCTCGGAGAAGGCACG	0.517													4	56					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56552295	56552295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:56552295G>A	uc002qmj.2	+	11	2794	c.2794G>A	c.(2794-2796)GAC>AAC	p.D932N	NLRP5_uc002qmi.2_Missense_Mutation_p.D913N	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	932						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CAGACTGGAGGACTGTGGCAT	0.547													5	30					0	0	1	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701885	56701885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:56701885C>T	uc010ygh.1	-	4	799	c.799G>A	c.(799-801)GAT>AAT	p.D267N		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	267					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GTGTCAGCATCCACATTTTCC	0.502													9	103					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57642775	57642775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:57642775G>A	uc002qny.2	+	4	3088	c.2732G>A	c.(2731-2733)GGG>GAG	p.G911E		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	911					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ATCCCTCAGGGGGAATACGAA	0.468													7	63					0	0	1	0	0
DUXA	503835	broad.mit.edu	37	19	57666741	57666742	+	Splice_Site	DNP	CT	AC	AC			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:57666741_57666742CT>AC	uc002qoa.1	-	5	484	c.439_splice	c.e5-1	p.I147_splice		NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A							nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		GGAACCAAATCTAAGTGGTAAG	0.376													6	32					0	0	1	0	0
ZNF530	348327	broad.mit.edu	37	19	58117551	58117551	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:58117551T>G	uc002qpk.2	+	3	878	c.658T>G	c.(658-660)TTT>GTT	p.F220V	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	220					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CAGGAAATCTTTTAGAGAGAA	0.443													5	51					0	0	1	0	0
ZNF530	348327	broad.mit.edu	37	19	58117924	58117924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:58117924C>T	uc002qpk.2	+	3	1251	c.1031C>T	c.(1030-1032)GCC>GTC	p.A344V	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	344	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CACAGGAGTGCCCACACTAGC	0.463													5	67					0	0	1	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58187717	58187717	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:58187717C>T	uc002qpu.2	+	3	901	c.204C>T	c.(202-204)ATC>ATT	p.I68I		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	68	SCAN box.				telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TTTATAGGATCTTTCACTCAT	0.398													4	29					0	0	1	0	0
ZNF418	147686	broad.mit.edu	37	19	58437563	58437563	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:58437563G>A	uc002qqs.1	-	4	2278	c.1986C>T	c.(1984-1986)CTC>CTT	p.L662L	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Silent_p.L577L	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	662	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		GATGTCGAAGGAGAGAAGAGC	0.413													6	53					0	0	1	0	0
ZNF606	80095	broad.mit.edu	37	19	58489928	58489928	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:58489928G>A	uc002qqw.2	-	7	2738	c.2120C>T	c.(2119-2121)CCA>CTA	p.P707L	ZNF606_uc010yhp.1_Missense_Mutation_p.P617L	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	707					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		ACACCTGTATGGTTTCTCTCC	0.393													5	47					0	0	1	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58565236	58565236	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:58565236G>A	uc002qrc.1	+	6	1291	c.1044G>A	c.(1042-1044)AGG>AGA	p.R348R		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	348					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		AGCCACCGAGGAAGAAAGCCC	0.667													4	30					0	0	1	0	0
ZNF329	79673	broad.mit.edu	37	19	58640603	58640603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:58640603C>T	uc002qrn.2	-	4	505	c.268G>A	c.(268-270)GGT>AGT	p.G90S	ZNF329_uc010euk.1_RNA|ZNF329_uc002qro.1_RNA|ZNF329_uc002qrp.1_RNA	NM_024620	NP_078896	Q86UD4	ZN329_HUMAN	zinc finger protein 329	90					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.029)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.017)|Lung(386;0.216)		GCATGGAAACCATTTGTTGCC	0.468													13	113					0	0	1	0	0
ZNF446	55663	broad.mit.edu	37	19	58988660	58988660	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:58988660C>T	uc002qsz.2	+	2	192	c.75C>T	c.(73-75)GCC>GCT	p.A25A	ZNF446_uc002qta.2_Silent_p.A25A|ZNF446_uc010eur.2_Silent_p.A25A	NM_017908	NP_060378	Q9NWS9	ZN446_HUMAN	zinc finger protein 446	25					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		CTGAGACTGCCCGCCTCCGCT	0.657													9	117					0	0	1	0	0
SLC27A5	10998	broad.mit.edu	37	19	59023011	59023011	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:59023011G>A	uc002qtc.2	-	1	422	c.312C>T	c.(310-312)ATC>ATT	p.I104I		NM_012254	NP_036386	Q9Y2P5	S27A5_HUMAN	solute carrier family 27 (fatty acid	104	Cytoplasmic (Probable).				bile acid and bile salt transport|bile acid biosynthetic process|very long-chain fatty acid metabolic process	endoplasmic reticulum membrane|integral to membrane	ATP binding|cholate-CoA ligase activity|long-chain fatty acid-CoA ligase activity				0		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.181)		AGCATCCCCTGATCTTCAGGC	0.647													3	7					0	0	1	0	0
SNTG2	54221	broad.mit.edu	37	2	1094084	1094084	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:1094084G>A	uc002qwq.2	+	4	441	c.313G>A	c.(313-315)GAA>AAA	p.E105K	SNTG2_uc002qwp.2_RNA|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	105	PDZ.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		AAAAATATTCGAAGACCAAGC	0.388													5	72					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1437313	1437313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:1437313G>A	uc002qww.2	+	4	374	c.283G>A	c.(283-285)GAA>AAA	p.E95K	TPO_uc010ewj.2_Intron|TPO_uc010yin.1_Missense_Mutation_p.E95K|TPO_uc002qwu.2_Missense_Mutation_p.E95K|TPO_uc002qwr.2_Missense_Mutation_p.E95K|TPO_uc002qwx.2_Missense_Mutation_p.E95K|TPO_uc010yio.1_Missense_Mutation_p.E95K|TPO_uc010yip.1_Missense_Mutation_p.E95K	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	95	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	AGAGATAATGGAAACATCAAT	0.478													5	27					0	0	1	0	0
PXDN	7837	broad.mit.edu	37	2	1652269	1652269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:1652269G>A	uc002qxa.2	-	17	3347	c.3283C>T	c.(3283-3285)CAC>TAC	p.H1095Y		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1095					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		AGGGGGAGGTGATCTTGTGCA	0.582													4	19					0	0	1	0	0
PXDN	7837	broad.mit.edu	37	2	1653263	1653263	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:1653263G>A	uc002qxa.2	-	17	2353	c.2289C>T	c.(2287-2289)TTC>TTT	p.F763F		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	763					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		GCAGGCGCTCGAAGGCGGTCA	0.632													15	124					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1891348	1891348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:1891348C>T	uc002qxe.2	-	17	3381	c.2554G>A	c.(2554-2556)GAA>AAA	p.E852K	MYT1L_uc002qxd.2_Missense_Mutation_p.E850K|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	852					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		CGTCTTTCTTCTAGAGCCTCC	0.527													4	117					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1921025	1921025	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:1921025G>A	uc002qxe.2	-	11	2397	c.1570C>T	c.(1570-1572)CAC>TAC	p.H524Y	MYT1L_uc002qxd.2_Missense_Mutation_p.H522Y|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	524	C2HC-type 2.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		AGGCTGCGGTGATGTGGGTAC	0.557													18	183					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1926164	1926164	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:1926164C>T	uc002qxe.2	-	10	2204	c.1377G>A	c.(1375-1377)AGG>AGA	p.R459R	MYT1L_uc002qxd.2_Silent_p.R459R|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	459					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TCATATTGTCCCTCCTCCCAG	0.522													8	114					0	0	1	0	0
TSSC1	7260	broad.mit.edu	37	2	3197817	3197817	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:3197817G>A	uc002qxj.2	-	7	967	c.774C>T	c.(772-774)ACC>ACT	p.T258T	TSSC1_uc002qxi.2_RNA	NM_003310	NP_003301	Q53HC9	TSSC1_HUMAN	tumor suppressing subtransferable candidate 1	258	WD 3.						protein binding				0	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.212)		OV - Ovarian serous cystadenocarcinoma(76;0.00877)|Epithelial(75;0.0283)|all cancers(51;0.0464)		TGACATTTCGGGTGTCCCAGA	0.562													11	73					0	0	1	0	0
TTC15	51112	broad.mit.edu	37	2	3469395	3469395	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:3469395C>T	uc002qxm.1	+	9	1911	c.1705C>T	c.(1705-1707)CAT>TAT	p.H569Y	TTC15_uc002qxn.1_Missense_Mutation_p.H569Y|TTC15_uc010ewm.1_Missense_Mutation_p.H575Y	NM_016030	NP_057114	Q8WVT3	TTC15_HUMAN	tetratricopeptide repeat domain 15	569	TPR 1.						binding			ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.214)		OV - Ovarian serous cystadenocarcinoma(76;0.0402)|Epithelial(75;0.0986)|all cancers(51;0.149)		GGAGGCGTATCATTCGGTTAT	0.537													14	127					0	0	1	0	0
RNASEH1	246243	broad.mit.edu	37	2	3597994	3597994	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:3597994T>C	uc002qxt.2	-	4	568	c.478A>G	c.(478-480)ATC>GTC	p.I160V	RNASEH1_uc002qxs.2_Missense_Mutation_p.I43V	NM_002936	NP_002927	O60930	RNH1_HUMAN	ribonuclease H1	160	RNase H.				RNA catabolic process	cytoplasm	magnesium ion binding|ribonuclease H activity|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0713)|Epithelial(75;0.167)|all cancers(51;0.22)		TAAACGCCGATTCCTGCTCGC	0.517													15	145					0	0	1	0	0
ALLC	55821	broad.mit.edu	37	2	3727484	3727484	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:3727484G>A	uc010ewt.2	+	5	359	c.198G>A	c.(196-198)CTG>CTA	p.L66L		NM_018436	NP_060906	Q8N6M5	ALLC_HUMAN	allantoicase isoform a	85							allantoicase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.088)	all_cancers(51;0.24)		OV - Ovarian serous cystadenocarcinoma(76;0.088)|all cancers(51;0.151)|Epithelial(75;0.206)		TCCTCAGGCTGGGGATCCAAG	0.567										HNSCC(21;0.051)			8	99					0	0	1	0	0
RNF144A	9781	broad.mit.edu	37	2	7160716	7160716	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:7160716C>T	uc002qys.2	+	6	856	c.414C>T	c.(412-414)TGC>TGT	p.C138C	RNF144A_uc002qyt.2_5'UTR	NM_014746	NP_055561	P50876	R144A_HUMAN	ring finger protein 144	138	IBR-type.					Golgi apparatus|integral to membrane	ligase activity|zinc ion binding			ovary(1)|kidney(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)	all_cancers(51;0.226)		OV - Ovarian serous cystadenocarcinoma(76;0.195)		GCAAAGCCTGCCGTATGGAAT	0.657													5	114					0	0	1	0	0
MBOAT2	129642	broad.mit.edu	37	2	9000758	9000758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:9000758G>A	uc002qzg.1	-	12	1455	c.1322C>T	c.(1321-1323)TCA>TTA	p.S441L	MBOAT2_uc010yix.1_3'UTR	NM_138799	NP_620154	Q6ZWT7	MBOA2_HUMAN	O-acyltransferase (membrane bound) domain	441					phospholipid biosynthetic process	integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					AAACGTGAGTGATGGTTTTAT	0.313													4	58					0	0	1	0	0
ASAP2	8853	broad.mit.edu	37	2	9484673	9484673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:9484673C>T	uc002qzh.2	+	10	1202	c.862C>T	c.(862-864)CGT>TGT	p.R288C	ASAP2_uc002qzi.2_Missense_Mutation_p.R288C	NM_003887	NP_003878	O43150	ASAP2_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	288					regulation of ARF GTPase activity	Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|protein binding|zinc ion binding				0						CTCCCAAATTCGTCAGAGCAC	0.443													4	47					0	0	1	0	0
ASAP2	8853	broad.mit.edu	37	2	9528648	9528648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:9528648C>T	uc002qzh.2	+	22	2696	c.2356C>T	c.(2356-2358)CCG>TCG	p.P786S	ASAP2_uc002qzi.2_Missense_Mutation_p.P786S	NM_003887	NP_003878	O43150	ASAP2_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	786	Pro-rich.				regulation of ARF GTPase activity	Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|protein binding|zinc ion binding				0						CAGCGCCCCCCCGCTTCCTCC	0.577													7	36					0	0	1	0	0
ITGB1BP1	9270	broad.mit.edu	37	2	9558820	9558820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:9558820G>A	uc002qzj.2	-	2	184	c.7C>T	c.(7-9)CGC>TGC	p.R3C	ITGB1BP1_uc002qzk.2_Missense_Mutation_p.R3C|ITGB1BP1_uc002qzl.2_RNA|ITGB1BP1_uc002qzm.2_RNA|ITGB1BP1_uc010yiy.1_Intron|ITGB1BP1_uc002qzn.1_Missense_Mutation_p.R3C	NM_004763	NP_004754	O14713	ITBP1_HUMAN	integrin cytoplasmic domain-associated protein 1	3					cell migration|cell-matrix adhesion|intracellular protein kinase cascade	cytosol|lamellipodium|membrane|ruffle	protein binding|protein binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.23)		TTGCCCTTGCGAAACATTTTT	0.373													27	151					0	0	1	0	0
PDIA6	10130	broad.mit.edu	37	2	10929932	10929932	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:10929932G>A	uc002rau.2	-	8	921	c.783C>T	c.(781-783)ATC>ATT	p.I261I	PDIA6_uc010yjg.1_Silent_p.I258I|PDIA6_uc002rav.2_Silent_p.I313I|PDIA6_uc010yjh.1_Silent_p.I266I|PDIA6_uc002raw.2_Silent_p.I309I	NM_005742	NP_005733	Q15084	PDIA6_HUMAN	protein disulfide isomerase A6 precursor	261	Thioredoxin 2.				cell redox homeostasis|glycerol ether metabolic process|protein folding	endoplasmic reticulum lumen|ER-Golgi intermediate compartment|melanosome|plasma membrane	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.149)|OV - Ovarian serous cystadenocarcinoma(76;0.15)		CCCGGGACACGATGTCGGATC	0.453													8	67					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11738872	11738872	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:11738872T>C	uc002rbk.1	+	15	2519	c.2219T>C	c.(2218-2220)CTG>CCG	p.L740P	GREB1_uc002rbo.1_Missense_Mutation_p.L374P	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	740						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CAGTATGTTCTGAAGCTAGAC	0.458													13	93					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11742594	11742594	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:11742594C>T	uc002rbk.1	+	17	2892	c.2592C>T	c.(2590-2592)ACC>ACT	p.T864T	GREB1_uc002rbo.1_Silent_p.T498T	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	864						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		TTGAATCCACCCTTTCAGGAC	0.443													18	161					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11773064	11773064	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:11773064C>T	uc002rbk.1	+	28	5166	c.4866C>T	c.(4864-4866)CTC>CTT	p.L1622L	GREB1_uc002rbp.1_Silent_p.L620L	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	1622						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		ACCTGGAGCTCGAGCGGAACC	0.572													6	33					0	0	1	0	0
LPIN1	23175	broad.mit.edu	37	2	11911634	11911634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:11911634C>T	uc010yjn.1	+	5	699	c.425C>T	c.(424-426)CCC>CTC	p.P142L	LPIN1_uc010yjm.1_Missense_Mutation_p.P191L|LPIN1_uc002rbt.2_Missense_Mutation_p.P142L|LPIN1_uc002rbs.2_Missense_Mutation_p.P142L	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	142					fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		GTGATCGCTCCCAGCGAGACG	0.537													7	44					0	0	1	0	0
LPIN1	23175	broad.mit.edu	37	2	11924018	11924018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:11924018C>T	uc010yjn.1	+	9	1494	c.1220C>T	c.(1219-1221)CCT>CTT	p.P407L	LPIN1_uc010yjm.1_Missense_Mutation_p.P492L|LPIN1_uc002rbt.2_Missense_Mutation_p.P407L|LPIN1_uc002rbs.2_Missense_Mutation_p.P443L	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	407					fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		GACATGGATCCTGAAGTGGCG	0.433													11	169					0	0	1	0	0
KCNS3	3790	broad.mit.edu	37	2	18113311	18113311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:18113311G>A	uc002rcv.2	+	3	1487	c.1036G>A	c.(1036-1038)GAG>AAG	p.E346K	KCNS3_uc002rcw.2_Missense_Mutation_p.E346K	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	346	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CTACTCCGTGGAGAAAGATGA	0.537													17	73					0	0	1	0	0
NT5C1B	93034	broad.mit.edu	37	2	18736791	18736791	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:18736791A>G	uc010exr.2	-	9	1723	c.1619T>C	c.(1618-1620)CTT>CCT	p.L540P	NT5C1B_uc002rcy.2_3'UTR|RDH14_uc002rcx.3_Missense_Mutation_p.L226P	NM_033253	NP_150278	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 2	Error:Variant_position_missing_in_Q96P26_after_alignment					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				CCTGGTAAAAAGAATGTTAGC	0.413													6	65					0	0	1	0	0
NT5C1B	93034	broad.mit.edu	37	2	18757556	18757556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:18757556C>T	uc002rcz.2	-	9	1507	c.1403G>A	c.(1402-1404)GGG>GAG	p.G468E	NT5C1B_uc002rcy.2_Missense_Mutation_p.G468E|NT5C1B_uc010exr.2_Missense_Mutation_p.G410E|NT5C1B_uc010yju.1_Missense_Mutation_p.G408E|NT5C1B_uc002rda.2_Missense_Mutation_p.G408E|NT5C1B_uc010yjv.1_Missense_Mutation_p.G485E|NT5C1B_uc010yjw.1_Missense_Mutation_p.G451E|NT5C1B_uc010exs.2_Missense_Mutation_p.G470E	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	468					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				GACAGCATCCCCATCAAAGGC	0.448													3	19					0	0	1	0	0
NT5C1B	93034	broad.mit.edu	37	2	18765398	18765398	+	Missense_Mutation	SNP	C	T	T	rs140827083	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:18765398C>T	uc002rcz.2	-	6	1131	c.1027G>A	c.(1027-1029)GAG>AAG	p.E343K	NT5C1B_uc002rcy.2_Missense_Mutation_p.E343K|NT5C1B_uc010exr.2_Missense_Mutation_p.E285K|NT5C1B_uc010yju.1_Missense_Mutation_p.E283K|NT5C1B_uc002rda.2_Missense_Mutation_p.E283K|NT5C1B_uc010yjv.1_Missense_Mutation_p.E360K|NT5C1B_uc010yjw.1_Missense_Mutation_p.E326K|NT5C1B_uc010exs.2_Missense_Mutation_p.E345K|NT5C1B_uc002rdb.1_Missense_Mutation_p.E135K	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	343					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				ATGACGTTCTCATTGGTGAGC	0.572													6	151					0	0	1	0	0
PUM2	23369	broad.mit.edu	37	2	20512037	20512037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:20512037G>A	uc002rds.1	-	3	331	c.308C>T	c.(307-309)CCT>CTT	p.P103L	PUM2_uc002rdt.1_Missense_Mutation_p.P103L|PUM2_uc002rdr.2_Missense_Mutation_p.P42L|PUM2_uc010yjy.1_Missense_Mutation_p.P103L|PUM2_uc002rdu.1_Missense_Mutation_p.P103L|PUM2_uc010yjz.1_Missense_Mutation_p.P42L	NM_015317	NP_056132	Q8TB72	PUM2_HUMAN	pumilio homolog 2	103	Interaction with SNAPIN.				regulation of translation	perinuclear region of cytoplasm|stress granule	protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTTATCAGCAGGAGAAGAACT	0.348													3	27					0	0	1	0	0
GDF7	151449	broad.mit.edu	37	2	20870883	20870883	+	Missense_Mutation	SNP	C	T	T	rs140019810		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:20870883C>T	uc002rdz.1	+	2	1627	c.1051C>T	c.(1051-1053)CGC>TGC	p.R351C		NM_182828	NP_878248	Q7Z4P5	GDF7_HUMAN	growth differentiation factor 7 preproprotein	351					activin receptor signaling pathway|BMP signaling pathway|growth|pathway-restricted SMAD protein phosphorylation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCGCTGCAGCCGCAAGCCGTT	0.537													7	16					0	0	1	0	0
GDF7	151449	broad.mit.edu	37	2	20870930	20870930	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:20870930G>A	uc002rdz.1	+	2	1674	c.1098G>A	c.(1096-1098)TGG>TGA	p.W366*		NM_182828	NP_878248	Q7Z4P5	GDF7_HUMAN	growth differentiation factor 7 preproprotein	366					activin receptor signaling pathway|BMP signaling pathway|growth|pathway-restricted SMAD protein phosphorylation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGGACGACTGGATCATCGCGC	0.498													8	27					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21225563	21225563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:21225563G>A	uc002red.2	-	29	12859	c.12731C>T	c.(12730-12732)TCC>TTC	p.S4244F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4244					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTGGAAATAGGAAAACAGTAT	0.378													68	158					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21225977	21225977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:21225977C>T	uc002red.2	-	29	12445	c.12317G>A	c.(12316-12318)AGA>AAA	p.R4106K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4106					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTGCAGATTTCTTCTCAGCTT	0.498													91	213					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21229818	21229818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:21229818G>A	uc002red.2	-	26	10050	c.9922C>T	c.(9922-9924)CAT>TAT	p.H3308Y		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3308					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTAGGGACATGAAGGACTGGC	0.428													13	233					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21230373	21230373	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:21230373G>A	uc002red.2	-	26	9495	c.9367C>T	c.(9367-9369)CTG>TTG	p.L3123L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3123					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AAGAAATCCAGATTTGCTTCT	0.368													14	248					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21232290	21232290	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:21232290G>A	uc002red.2	-	26	7578	c.7450C>T	c.(7450-7452)CTA>TTA	p.L2484L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2484					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GTGTCCTGTAGGCTTTCCAGA	0.423													125	315					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21234519	21234519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:21234519C>T	uc002red.2	-	26	5349	c.5221G>A	c.(5221-5223)GAC>AAC	p.D1741N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1741					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CCCATCATGTCATTTGAGAGC	0.408													34	525					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21238062	21238062	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:21238062G>A	uc002red.2	-	23	3707	c.3579C>T	c.(3577-3579)TTC>TTT	p.F1193F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1193					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GATCCACAGGGAAATTGGAAG	0.408													150	349					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21239331	21239331	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:21239331G>A	uc002red.2	-	21	3440	c.3312C>T	c.(3310-3312)GTC>GTT	p.V1104V		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1104					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CCATGAGGGCGACCTCAGTAA	0.478													21	304					0	0	1	0	0
C2orf44	80304	broad.mit.edu	37	2	24253872	24253872	+	Silent	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:24253872G>T	uc002rep.2	-	4	2228	c.2097C>A	c.(2095-2097)GTC>GTA	p.V699V	C2orf44_uc010eya.2_3'UTR	NM_025203	NP_079479	Q9H6R7	CB044_HUMAN	hypothetical protein LOC80304 isoform 1	699							protein binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCCTGTAAAGACTTTAAGAG	0.468													11	40					4.68919e-08	4.75052e-08	1	1	0
ITSN2	50618	broad.mit.edu	37	2	24507679	24507679	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:24507679G>A	uc002rfe.2	-	17	2155	c.1897C>T	c.(1897-1899)CTT>TTT	p.L633F	ITSN2_uc002rff.2_Intron|ITSN2_uc002rfg.2_Missense_Mutation_p.L633F	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	633	Potential.				endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGAGACAAAAGGCACTGAAGA	0.313													4	48					0	0	1	0	0
ADCY3	109	broad.mit.edu	37	2	25064518	25064518	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:25064518G>A	uc002rfs.3	-	4	1174	c.975C>T	c.(973-975)ATC>ATT	p.I325I	ADCY3_uc002rfr.3_5'UTR|ADCY3_uc010ykm.1_Silent_p.I325I	NM_004036	NP_004027	O60266	ADCY3_HUMAN	adenylate cyclase 3	325		Magnesium 2; via carbonyl oxygen (By similarity).			activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			breast(3)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					TAAAGCCCACGATGTCGGCAA	0.602													13	30					0	0	1	0	0
ADCY3	109	broad.mit.edu	37	2	25141245	25141245	+	Silent	SNP	G	A	A	rs79278464		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:25141245G>A	uc002rfs.3	-	1	811	c.612C>T	c.(610-612)GTC>GTT	p.V204V	ADCY3_uc010ykm.1_Silent_p.V204V	NM_004036	NP_004027	O60266	ADCY3_HUMAN	adenylate cyclase 3	204					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			breast(3)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					TGACCCCCAGGACCAACGTGT	0.632													18	46					0	0	1	0	0
RAB10	10890	broad.mit.edu	37	2	26257559	26257559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:26257559C>T	uc002rgv.2	+	1	831	c.82C>T	c.(82-84)CGT>TGT	p.R28C		NM_016131	NP_057215	P61026	RAB10_HUMAN	ras-related GTP-binding protein RAB10	28					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CGTCCTTTTTCGTTTTTCGGA	0.522													40	122					0	0	1	0	0
OTOF	9381	broad.mit.edu	37	2	26689584	26689584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:26689584G>A	uc002rhk.2	-	36	4625	c.4498C>T	c.(4498-4500)CGG>TGG	p.R1500W	OTOF_uc010yla.1_Missense_Mutation_p.R230W|OTOF_uc002rhh.2_Missense_Mutation_p.R733W|OTOF_uc002rhi.2_Missense_Mutation_p.R810W|OTOF_uc002rhj.2_Missense_Mutation_p.R733W	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1500	Cytoplasmic (Potential).|C2 4.				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGTCTCACCCGGACCACATAG	0.527													5	51					0	0	1	0	0
OTOF	9381	broad.mit.edu	37	2	26739395	26739395	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:26739395G>A	uc002rhk.2	-	5	527	c.400C>T	c.(400-402)CTG>TTG	p.L134L	OTOF_uc010ylb.1_RNA	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	134	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCATCTCCCAGGAAGTCCCCA	0.642													7	123					0	0	1	0	0
OTOF	9381	broad.mit.edu	37	2	26781398	26781398	+	Silent	SNP	C	T	T	rs6734111	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:26781398C>T	uc002rhk.2	-	1	169	c.42G>A	c.(40-42)CGG>CGA	p.R14R		NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	14	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CGCCCCTGCCCCGCAGCTCCG	0.652													4	68					0	0	1	0	0
CIB4	130106	broad.mit.edu	37	2	26818096	26818096	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:26818096G>A	uc002rhm.2	-	4	305	c.276C>T	c.(274-276)TTC>TTT	p.F92F		NM_001029881	NP_001025052	A0PJX0	CIB4_HUMAN	calcium and integrin binding family member 4	92	EF-hand 1.						calcium ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCTGCTCGCTGAACACAGATG	0.557													5	51					0	0	1	0	0
C2orf18	54978	broad.mit.edu	37	2	27001361	27001361	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:27001361C>T	uc002rhp.1	+	6	1174	c.1098C>T	c.(1096-1098)CCC>CCT	p.P366P	C2orf18_uc002rhq.1_Silent_p.P283P|C2orf18_uc010eyo.1_Silent_p.P313P|C2orf18_uc010ylc.1_Silent_p.P219P	NM_017877	NP_060347	Q8N357	CB018_HUMAN	ANT2-binding protein precursor	366						integral to membrane|lysosomal membrane					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCCGCACTCCCATCAATGATG	0.667													10	21					0	0	1	0	0
TCF23	150921	broad.mit.edu	37	2	27373228	27373228	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:27373228C>T	uc010ylg.1	+	2	460	c.460C>T	c.(460-462)CTC>TTC	p.L154F		NM_175769	NP_786951	Q7RTU1	TCF23_HUMAN	transcription factor 23	154					cell differentiation|muscle organ development|regulation of transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTTGCACCCTCTCAAGGTAAG	0.627													19	221					0	0	1	0	0
SLC5A6	8884	broad.mit.edu	37	2	27425702	27425702	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:27425702G>A	uc002rjd.2	-	12	1645	c.1254C>T	c.(1252-1254)TCC>TCT	p.S418S	SLC5A6_uc010eyv.1_Silent_p.S418S	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	418					biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	GTCCCATCTGGGAGGAAATAT	0.458													7	166					0	0	1	0	0
CAD	790	broad.mit.edu	37	2	27455332	27455332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:27455332C>T	uc002rji.2	+	18	2824	c.2662C>T	c.(2662-2664)CGC>TGC	p.R888C	CAD_uc010eyw.2_Missense_Mutation_p.R825C	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	888	CPSase (Carbamoyl-phosphate synthase).|CPSase A.				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	GCTGGCTGTTCGCAAGCTGCG	0.507													25	35					0	0	1	0	0
CAD	790	broad.mit.edu	37	2	27455482	27455482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:27455482C>T	uc002rji.2	+	18	2974	c.2812C>T	c.(2812-2814)CTT>TTT	p.L938F	CAD_uc010eyw.2_Missense_Mutation_p.L875F	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	938	CPSase B.|CPSase (Carbamoyl-phosphate synthase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	TGTCCTAGTCCTTGGCTCTGG	0.512													8	83					0	0	1	0	0
SLC30A3	7781	broad.mit.edu	37	2	27481759	27481759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:27481759G>A	uc002rjk.2	-	2	325	c.139C>T	c.(139-141)CCT>TCT	p.P47S	SLC30A3_uc002rjj.2_5'Flank|SLC30A3_uc010ylh.1_Missense_Mutation_p.P42S	NM_003459	NP_003450	Q99726	ZNT3_HUMAN	solute carrier family 30 (zinc transporter),	47	Cytoplasmic (Potential).				regulation of sequestering of zinc ion	cell junction|integral to plasma membrane|late endosome|membrane fraction|synaptic vesicle membrane	zinc transporting ATPase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATCTCCACAGGTTTGGACTCC	0.637													21	46					0	0	1	0	0
GCKR	2646	broad.mit.edu	37	2	27730116	27730116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:27730116C>T	uc002rky.2	+	13	1147	c.1081C>T	c.(1081-1083)CGT>TGT	p.R361C	GCKR_uc010ezd.2_Missense_Mutation_p.R359C|GCKR_uc010ylu.1_Missense_Mutation_p.R171C	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	361	SIS 2.				carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding	p.R361H(1)		ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					CCGAGATGTCCGTGGCTTTCT	0.498													99	257					0	0	1	0	0
GCKR	2646	broad.mit.edu	37	2	27730641	27730641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:27730641G>A	uc002rky.2	+	14	1303	c.1237G>A	c.(1237-1239)GAT>AAT	p.D413N	GCKR_uc010ezd.2_Missense_Mutation_p.D411N|GCKR_uc010ylu.1_Missense_Mutation_p.D223N	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	413	SIS 2.				carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					TTTCACCCTGGATGGTGAGAG	0.542													26	34					0	0	1	0	0
GCKR	2646	broad.mit.edu	37	2	27745392	27745392	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:27745392G>A	uc002rky.2	+	18	1704	c.1638G>A	c.(1636-1638)CAG>CAA	p.Q546Q	GCKR_uc010ezd.2_Silent_p.Q544Q|GCKR_uc010ylu.1_Silent_p.Q356Q	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	546					carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					ACTTTCCCCAGCCACTGTCAG	0.517													9	116					0	0	1	0	0
C2orf16	84226	broad.mit.edu	37	2	27804145	27804145	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:27804145C>T	uc002rkz.3	+	1	4757	c.4706C>T	c.(4705-4707)CCC>CTC	p.P1569L	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1569	Arg-rich.									large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CATCGCAGTCCCTCTGAGAGA	0.537													33	71					0	0	1	0	0
C2orf16	84226	broad.mit.edu	37	2	27804610	27804610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:27804610G>A	uc002rkz.3	+	1	5222	c.5171G>A	c.(5170-5172)AGG>AAG	p.R1724K	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1724	27 X 8 AA approximative tandem repeat of P-S-E-R-S-H-H-S.|Arg-rich.|12.									large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CCCGCTCGGAGGAGCCATCGC	0.562													14	176					0	0	1	0	0
FOSL2	2355	broad.mit.edu	37	2	28634950	28634950	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:28634950C>T	uc002rma.2	+	4	1425	c.616C>T	c.(616-618)CTG>TTG	p.L206L	FOSL2_uc010ymi.1_Silent_p.L167L	NM_005253	NP_005244	P15408	FOSL2_HUMAN	FOS-like antigen 2	206					cell death|regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(172;0.155)					AGCCCCTGGGCTGCAGCCCAT	0.667													26	55					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28865889	28865889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:28865889G>A	uc002rmb.1	+	58	4339	c.4339G>A	c.(4339-4341)GAA>AAA	p.E1447K	PLB1_uc010ezj.1_Missense_Mutation_p.E1436K|PLB1_uc002rme.1_Missense_Mutation_p.E412K|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	1447	Cytoplasmic (Potential).				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TGGCCGGAGGGAAGATCCTCC	0.652													4	12					0	0	1	0	0
FAM179A	165186	broad.mit.edu	37	2	29237342	29237342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:29237342C>T	uc010ezl.2	+	8	1310	c.959C>T	c.(958-960)CCC>CTC	p.P320L	FAM179A_uc010ymm.1_Missense_Mutation_p.P320L|FAM179A_uc002rmr.3_5'UTR	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	320							binding			ovary(3)|skin(1)	4						CAGTCTGCTCCCACGCTGACA	0.592													5	15					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29293628	29293628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:29293628G>A	uc002rmt.1	-	1	3500	c.3500C>T	c.(3499-3501)TCA>TTA	p.S1167L		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	1167					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CCAAGGCCCTGAGCTGTTCTT	0.637													19	42					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29498074	29498074	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:29498074G>A	uc002rmy.2	-	11	2839	c.1932C>T	c.(1930-1932)ATC>ATT	p.I644I		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	644	Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	TATTCTGCAGGATCTTGTCCT	0.493			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				16	43					0	0	1	0	0
LBH	81606	broad.mit.edu	37	2	30457361	30457361	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:30457361C>T	uc002rne.2	+	2	325	c.117C>T	c.(115-117)GGC>GGT	p.G39G		NM_030915	NP_112177	Q53QV2	LBH_HUMAN	limb bud and heart development homolog	39					multicellular organismal development|transcription, DNA-dependent	cytoplasm|nucleolus					0	Acute lymphoblastic leukemia(172;0.155)					GCAAGGATGGCCTTTCCTACC	0.468													13	43					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31135152	31135152	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:31135152G>A	uc002rnr.2	-	14	2056	c.1437C>T	c.(1435-1437)GTC>GTT	p.V479V	GALNT14_uc002rnq.2_Silent_p.V459V|GALNT14_uc002rns.2_Silent_p.V484V|GALNT14_uc010ymr.1_Silent_p.V444V	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	479	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					ACAAGGTGATGACTGACAGGC	0.557													5	80					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31570493	31570493	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:31570493G>A	uc002rnv.1	-	29	3250	c.3171C>T	c.(3169-3171)ATC>ATT	p.I1057I		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	1057					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TAGAGGTGGGGATTTTCAGAG	0.542													24	66					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31573001	31573001	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:31573001G>A	uc002rnv.1	-	25	2799	c.2720C>T	c.(2719-2721)CCC>CTC	p.P907L		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	907					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CGTGTTGGAGGGAAGGTTGGT	0.567													35	105					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31588393	31588393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:31588393C>T	uc002rnv.1	-	23	2553	c.2474G>A	c.(2473-2475)CGA>CAA	p.R825Q		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	825					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CAGCATGCATCGCACAGGGCG	0.577													6	81					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31590869	31590869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:31590869C>T	uc002rnv.1	-	20	2234	c.2155G>A	c.(2155-2157)GAC>AAC	p.D719N		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	719					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TTCTTTAGGTCCCCTTTCTCG	0.458													6	122					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31595143	31595143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:31595143C>T	uc002rnv.1	-	17	1886	c.1807G>A	c.(1807-1809)GAG>AAG	p.E603K		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	603					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	AGAGACAGCTCATTCTCGTAG	0.647													74	161					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31598275	31598275	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:31598275G>A	uc002rnv.1	-	15	1652	c.1573C>T	c.(1573-1575)CAG>TAG	p.Q525*		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	525					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CCCAGCTTCTGAAGGACTGTC	0.567													44	104					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31598300	31598300	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:31598300G>A	uc002rnv.1	-	15	1627	c.1548C>T	c.(1546-1548)TTC>TTT	p.F516F		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	516				FFF -> LLL (in Ref. 3; AAA75287).	purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	AGAACTTGAAGAAGAAGCTGA	0.597													29	82					0	0	1	0	0
XDH	7498	broad.mit.edu	37	2	31621460	31621460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:31621460C>T	uc002rnv.1	-	5	491	c.412G>A	c.(412-414)GAG>AAG	p.E138K		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	138					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TTCTCAATCTCCTCCATGGTG	0.587													5	87					0	0	1	0	0
NLRC4	58484	broad.mit.edu	37	2	32474912	32474912	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:32474912T>C	uc002roi.2	-	4	2267	c.2021A>G	c.(2020-2022)AAG>AGG	p.K674R	NLRC4_uc002roj.1_Missense_Mutation_p.K674R|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	674	LRR 4.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					GATATCTTGCTTATTCAACTT	0.473													4	115					0	0	1	0	0
NLRC4	58484	broad.mit.edu	37	2	32475575	32475575	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:32475575C>T	uc002roi.2	-	4	1604	c.1358G>A	c.(1357-1359)CGA>CAA	p.R453Q	NLRC4_uc002roj.1_Missense_Mutation_p.R453Q|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	453	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity	p.R453*(1)		ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					GCTGAGTCTTCGTCCTGCTGT	0.448													7	94					0	0	1	0	0
BIRC6	57448	broad.mit.edu	37	2	32724849	32724849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:32724849C>T	uc010ezu.2	+	46	8838	c.8704C>T	c.(8704-8706)CGT>TGT	p.R2902C		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2902					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					CAATCTTATTCGTCCGGGTGA	0.433													45	126					0	0	1	0	0
TTC27	55622	broad.mit.edu	37	2	32853391	32853391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:32853391G>A	uc002rom.2	+	1	263	c.32G>A	c.(31-33)GGA>GAA	p.G11E	TTC27_uc010ymx.1_Intron	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	11							protein binding			central_nervous_system(1)	1						ATTCTGAGGGGATTCCCCACT	0.607													12	33					0	0	1	0	0
TTC27	55622	broad.mit.edu	37	2	33007724	33007724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:33007724C>T	uc002rom.2	+	15	2042	c.1811C>T	c.(1810-1812)TCC>TTC	p.S604F	TTC27_uc010ymx.1_Missense_Mutation_p.S554F|TTC27_uc002ron.2_RNA	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	604	TPR 5.						protein binding			central_nervous_system(1)	1						TTGTCAACTTCCTATATCCGA	0.294													11	25					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33246129	33246129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:33246129C>T	uc002ros.2	+	3	719	c.719C>T	c.(718-720)TCC>TTC	p.S240F		NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	240					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GGGGCTGCTTCCTCGTGGGGC	0.557													16	50					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33484668	33484668	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:33484668C>T	uc002ros.2	+	13	2409	c.2409C>T	c.(2407-2409)CCC>CCT	p.P803P	LTBP1_uc002rot.2_Silent_p.P477P|LTBP1_uc002rou.2_Silent_p.P477P|LTBP1_uc002rov.2_Silent_p.P424P|LTBP1_uc010ymz.1_Silent_p.P477P|LTBP1_uc010yna.1_Silent_p.P424P	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	803					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CAACTGCACCCCCTGAAAAGG	0.289													14	35					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33498838	33498838	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:33498838G>A	uc002ros.2	+	16	2736	c.2736G>A	c.(2734-2736)AGG>AGA	p.R912R	LTBP1_uc002rot.2_Silent_p.R586R|LTBP1_uc002rou.2_Silent_p.R585R|LTBP1_uc002rov.2_Silent_p.R532R|LTBP1_uc010ymz.1_Silent_p.R585R|LTBP1_uc010yna.1_Silent_p.R532R	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	911					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				AACAACAGAGGAAATGTGTGG	0.363													3	16					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33614355	33614355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:33614355C>T	uc002ros.2	+	32	4819	c.4819C>T	c.(4819-4821)CCC>TCC	p.P1607S	LTBP1_uc002rot.2_Missense_Mutation_p.P1281S|LTBP1_uc002rou.2_Missense_Mutation_p.P1280S|LTBP1_uc002rov.2_Missense_Mutation_p.P1227S|LTBP1_uc010ymz.1_Missense_Mutation_p.P1238S|LTBP1_uc010yna.1_Missense_Mutation_p.P1185S|LTBP1_uc010ynb.1_Missense_Mutation_p.P504S	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1606					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				AGAAGCCGATCCCTACTTCAT	0.448													16	41					0	0	1	0	0
VIT	5212	broad.mit.edu	37	2	37002149	37002149	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:37002149C>T	uc002rpl.2	+	9	962	c.741C>T	c.(739-741)ATC>ATT	p.I247I	VIT_uc002rpm.2_Silent_p.I240I|VIT_uc010ezv.2_Intron|VIT_uc010ezw.2_Silent_p.I240I	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	247						proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				CCTCAGGTATCCAAAGGCAAG	0.507													15	62					0	0	1	0	0
VIT	5212	broad.mit.edu	37	2	37035853	37035853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:37035853C>T	uc002rpl.2	+	15	1849	c.1628C>T	c.(1627-1629)TCC>TTC	p.S543F	VIT_uc002rpm.2_Missense_Mutation_p.S521F|VIT_uc010ezv.2_Missense_Mutation_p.S499F|VIT_uc010ezw.2_Missense_Mutation_p.S500F	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	528	VWFA 2.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				TTTGAGATTTCCGACACGGAC	0.582													6	73					0	0	1	0	0
FAM82A1	151393	broad.mit.edu	37	2	38208450	38208450	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:38208450T>A	uc002rql.2	+	5	878	c.755T>A	c.(754-756)ATT>AAT	p.I252N	FAM82A1_uc002rqn.1_Missense_Mutation_p.I430N|FAM82A1_uc002rqk.1_Missense_Mutation_p.I107N|FAM82A1_uc002rqm.2_Missense_Mutation_p.I107N	NM_144713	NP_653314	Q96LZ7	RMD2_HUMAN	family with sequence similarity 82, member A1	252						cytoplasm|integral to membrane|microtubule|spindle pole	binding			ovary(1)	1						GAAAGAGCTATTAATAGAGCA	0.318													24	62					0	0	1	0	0
DHX57	90957	broad.mit.edu	37	2	39033710	39033710	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:39033710C>T	uc002rrf.2	-	22	3906	c.3807G>A	c.(3805-3807)GTG>GTA	p.V1269V	DHX57_uc002rrd.3_Intron|DHX57_uc002rre.2_Silent_p.V702V	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	1269							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				CCTGATAGTTCACTGATGAAG	0.423													34	79					0	0	1	0	0
DHX57	90957	broad.mit.edu	37	2	39081215	39081215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:39081215G>A	uc002rrf.2	-	9	2110	c.2011C>T	c.(2011-2013)CAT>TAT	p.H671Y	DHX57_uc002rrd.3_Missense_Mutation_p.H55Y|DHX57_uc002rre.2_Missense_Mutation_p.H104Y|DHX57_uc002rrg.2_3'UTR	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	671	DEVH box.|Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				GTCCTCTCATGAACTTCATCA	0.433													32	62					0	0	1	0	0
DHX57	90957	broad.mit.edu	37	2	39085927	39085927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:39085927G>A	uc002rrf.2	-	6	1562	c.1463C>T	c.(1462-1464)CCT>CTT	p.P488L	DHX57_uc002rre.2_5'UTR|DHX57_uc002rrg.2_Missense_Mutation_p.P488L	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	488							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				TACTATAACAGGTGCAGGACC	0.373													9	62					0	0	1	0	0
KCNG3	170850	broad.mit.edu	37	2	42671582	42671582	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:42671582G>A	uc002rsn.2	-	2	1399	c.803C>T	c.(802-804)TCT>TTT	p.S268F	KCNG3_uc002rsm.2_Missense_Mutation_p.S257F	NM_133329	NP_579875	Q8TAE7	KCNG3_HUMAN	potassium voltage-gated channel, subfamily G,	268	Helical; Name=Segment S3; (Potential).					endoplasmic reticulum|voltage-gated potassium channel complex	protein binding			central_nervous_system(1)	1						CATCAACACAGAGATGTAATA	0.443													4	79					0	0	1	0	0
THADA	63892	broad.mit.edu	37	2	43520130	43520131	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:43520130_43520131GG>AA	uc002rsw.3	-	32	5012_5013	c.4660_4661CC>TT	c.(4660-4662)CCT>TTT	p.P1554F	THADA_uc010far.2_Missense_Mutation_p.P749F|THADA_uc002rsx.3_Missense_Mutation_p.P1554F|THADA_uc002rsy.3_RNA	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1554							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				GCGCACTTCAGGGAAGGCAGAT	0.559													24	429					0	0	1	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43953567	43953567	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:43953567C>T	uc010yny.1	+	17	2781	c.2698C>T	c.(2698-2700)CTA>TTA	p.L900L	PLEKHH2_uc002rtf.3_Silent_p.L899L	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	900	PH 2.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				AACTTACCTCCTAATTGGATC	0.338													69	148					0	0	1	0	0
ABCG5	64240	broad.mit.edu	37	2	44050062	44050062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:44050062C>T	uc002rtn.2	-	10	1477	c.1337G>A	c.(1336-1338)CGA>CAA	p.R446Q	ABCG5_uc002rtm.2_Missense_Mutation_p.R51Q|ABCG5_uc002rto.2_Missense_Mutation_p.R275Q|ABCG5_uc002rtp.2_Missense_Mutation_p.R51Q	NM_022436	NP_071881	Q9H222	ABCG5_HUMAN	ATP-binding cassette sub-family G member 5	446	ABC transmembrane type-2.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GCTGACAGCTCGCAGCACGGG	0.582													9	83					0	0	1	0	0
ABCG5	64240	broad.mit.edu	37	2	44065740	44065740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:44065740C>T	uc002rtn.2	-	1	219	c.79G>A	c.(79-81)GGG>AGG	p.G27R	ABCG5_uc002rto.2_5'UTR|ABCG5_uc002rtp.2_5'UTR|ABCG8_uc002rtq.2_5'Flank|ABCG8_uc010yoa.1_5'Flank	NM_022436	NP_071881	Q9H222	ABCG5_HUMAN	ATP-binding cassette sub-family G member 5	27	Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GCAGGAGCCCCCTCCAGGGAG	0.647													16	262					0	0	1	0	0
ABCG8	64241	broad.mit.edu	37	2	44073309	44073309	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:44073309C>T	uc002rtq.2	+	3	271	c.181C>T	c.(181-183)CAG>TAG	p.Q61*	ABCG8_uc010yoa.1_Nonsense_Mutation_p.Q61*	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	61	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				CCTGGCCTCTCAGGTCCCTTG	0.527													77	136					0	0	1	0	0
ABCG8	64241	broad.mit.edu	37	2	44079738	44079738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:44079738G>A	uc002rtq.2	+	6	785	c.695G>A	c.(694-696)GGA>GAA	p.G232E	ABCG8_uc010yoa.1_Missense_Mutation_p.G232E	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	232	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				TGTTGGAAAGGAATCCTTATT	0.622													83	214					0	0	1	0	0
ABCG8	64241	broad.mit.edu	37	2	44079742	44079742	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:44079742C>T	uc002rtq.2	+	6	789	c.699C>T	c.(697-699)ATC>ATT	p.I233I	ABCG8_uc010yoa.1_Silent_p.I233I	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	233	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GGAAAGGAATCCTTATTCTCG	0.612													19	289					0	0	1	0	0
ABCG8	64241	broad.mit.edu	37	2	44079892	44079892	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:44079892C>T	uc002rtq.2	+	6	939	c.849C>T	c.(847-849)GTC>GTT	p.V283V	ABCG8_uc010yoa.1_Silent_p.V283V	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	283	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				TTGATCTGGTCCTCCTGATGA	0.587													33	471					0	0	1	0	0
LRPPRC	10128	broad.mit.edu	37	2	44152287	44152287	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:44152287G>A	uc002rtr.2	-	27	2873	c.2815C>T	c.(2815-2817)CTG>TTG	p.L939L	LRPPRC_uc010yob.1_Silent_p.L839L	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	939					mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				AATTTTTCCAGAGTTTCAACC	0.318													16	248					0	0	1	0	0
SLC3A1	6519	broad.mit.edu	37	2	44502933	44502933	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:44502933G>A	uc002ruc.3	+	1	337	c.259G>A	c.(259-261)GAG>AAG	p.E87K	SLC3A1_uc002rty.2_Missense_Mutation_p.E87K|SLC3A1_uc002rtz.2_Missense_Mutation_p.E87K|SLC3A1_uc002rua.2_Missense_Mutation_p.E87K|SLC3A1_uc002rub.2_Missense_Mutation_p.E87K	NM_000341	NP_000332	Q07837	SLC31_HUMAN	solute carrier family 3, member 1	87	Cytoplasmic (Potential).				carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity|catalytic activity|cation binding|L-cystine transmembrane transporter activity				0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	CATACCTCGGGAGATCCTCTT	0.617													7	75					0	0	1	0	0
SIX2	10736	broad.mit.edu	37	2	45233511	45233511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:45233511G>A	uc002ruo.2	-	2	967	c.674C>T	c.(673-675)TCA>TTA	p.S225L	SIX2_uc002rup.2_Missense_Mutation_p.S227L	NM_016932	NP_058628	Q9NPC8	SIX2_HUMAN	SIX homeobox 2	225						nucleus	sequence-specific DNA binding transcription factor activity			pancreas(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GCTGGATGATGAGTGGTCTGG	0.667													16	120					0	0	1	0	0
SIX2	10736	broad.mit.edu	37	2	45235791	45235791	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:45235791C>T	uc002ruo.2	-	1	752	c.459G>A	c.(457-459)GAG>GAA	p.E153E	SIX2_uc002rup.2_Silent_p.E153E	NM_016932	NP_058628	Q9NPC8	SIX2_HUMAN	SIX homeobox 2	153	Homeobox.					nucleus	sequence-specific DNA binding transcription factor activity			pancreas(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GCTCACGCTTCTCGCGGGGTG	0.657													37	67					0	0	1	0	0
EPAS1	2034	broad.mit.edu	37	2	46583360	46583360	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:46583360G>A	uc002ruv.2	+	3	776	c.288G>A	c.(286-288)GAG>GAA	p.E96E		NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	96	PAS 1.				angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			AAGCCTTGGAGGGTTTCATTG	0.522													5	70					0	0	1	0	0
CRIPT	9419	broad.mit.edu	37	2	46851359	46851359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:46851359C>T	uc002rve.2	+	5	396	c.299C>T	c.(298-300)TCT>TTT	p.S100F		NM_014171	NP_054890	Q9P021	CRIPT_HUMAN	postsynaptic protein CRIPT	100	PDZ3-binding.|Sufficient for interaction with DLG4.					cell junction|cytoplasm|dendritic spine					0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			AAGCAAACATCTGTCTAGATG	0.328													16	26					0	0	1	0	0
SOCS5	9655	broad.mit.edu	37	2	46986993	46986993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:46986993C>T	uc002rvf.2	+	2	1488	c.1324C>T	c.(1324-1326)CAT>TAT	p.H442Y	SOCS5_uc010yoe.1_Missense_Mutation_p.H411Y|SOCS5_uc002rvg.2_Missense_Mutation_p.H442Y	NM_014011	NP_054730	O75159	SOCS5_HUMAN	suppressor of cytokine signaling 5	442	SH2.				cell growth|cytokine-mediated signaling pathway|intracellular signal transduction|negative regulation of signal transduction|negative regulation of T-helper 2 cell differentiation|positive regulation of T-helper 1 cell differentiation|regulation of growth					ovary(1)|lung(1)|central_nervous_system(1)	3		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			TTTCGACGCCCATGACCCGTG	0.463													11	43					0	0	1	0	0
TTC7A	57217	broad.mit.edu	37	2	47202212	47202212	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:47202212C>T	uc002rvo.2	+	4	986	c.618C>T	c.(616-618)ATC>ATT	p.I206I	TTC7A_uc002rvm.2_Silent_p.I172I|TTC7A_uc002rvn.1_Silent_p.I87I|TTC7A_uc010fbb.2_Silent_p.I206I|TTC7A_uc010fbc.2_5'UTR|TTC7A_uc002rvp.2_Silent_p.I87I	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	206	TPR 2.						binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			CCTCCTGGATCGCTCAGGTGT	0.532													7	119					0	0	1	0	0
TTC7A	57217	broad.mit.edu	37	2	47249063	47249063	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:47249063C>T	uc002rvo.2	+	12	1823	c.1455C>T	c.(1453-1455)TTC>TTT	p.F485F	TTC7A_uc002rvm.2_Silent_p.F451F|TTC7A_uc002rvn.1_Silent_p.F366F|TTC7A_uc010fbb.2_Silent_p.F485F|TTC7A_uc010fbc.2_Silent_p.F131F|TTC7A_uc002rvp.2_Silent_p.F366F|TTC7A_uc002rvq.2_Silent_p.F225F|TTC7A_uc002rvr.2_Intron	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	485							binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			CCGGGGAGTTCCTCCCCAAGG	0.612													5	84					0	0	1	0	0
EPCAM	4072	broad.mit.edu	37	2	47600655	47600655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:47600655C>T	uc002rvx.2	+	2	488	c.130C>T	c.(130-132)CGT>TGT	p.R44C	EPCAM_uc002rvw.2_Missense_Mutation_p.R72C	NM_002354	NP_002345	P16422	EPCAM_HUMAN	epithelial cell adhesion molecule precursor	44	Extracellular (Potential).				positive regulation of cell proliferation	apical plasma membrane|basolateral plasma membrane|integral to membrane|lateral plasma membrane|tight junction	protein binding			skin(1)	1						GAATAATAATCGTCAATGCCA	0.318									Lynch_syndrome				7	14					0	0	1	0	0
MSH2	4436	broad.mit.edu	37	2	47690209	47690209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:47690209C>T	uc002rvy.1	+	9	1494	c.1426C>T	c.(1426-1428)CCT>TCT	p.P476S	MSH2_uc010yoh.1_Missense_Mutation_p.P410S|MSH2_uc002rvz.2_Missense_Mutation_p.P476S|MSH2_uc010fbg.2_Missense_Mutation_p.P286S|MSH2_uc010fbh.1_RNA|MSH2_uc010fbi.1_RNA	NM_000251	NP_000242	P43246	MSH2_HUMAN	mutS homolog 2	476					B cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|double-strand break repair|intra-S DNA damage checkpoint|isotype switching|maintenance of DNA repeat elements|male gonad development|meiotic gene conversion|meiotic mismatch repair|negative regulation of neuron apoptosis|negative regulation of reciprocal meiotic recombination|positive regulation of helicase activity|postreplication repair|response to UV-B|response to X-ray|somatic hypermutation of immunoglobulin genes	MutSalpha complex|MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|guanine/thymine mispair binding|loop DNA binding|protein C-terminus binding|protein homodimerization activity|protein kinase binding|Y-form DNA binding	p.?(2)		large_intestine(33)|haematopoietic_and_lymphoid_tissue(6)|endometrium(4)|ovary(3)|cervix(2)|central_nervous_system(2)|stomach(1)|small_intestine(1)|breast(1)|skin(1)|prostate(1)	55		all_hematologic(82;0.0359)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TTCATTTGATCCTAATCTCAG	0.333			D|Mis|N|F|S		colorectal|endometrial|ovarian	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				5	52					0	0	1	0	0
FBXO11	80204	broad.mit.edu	37	2	48066818	48066818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:48066818G>A	uc010fbl.2	-	2	185	c.71C>T	c.(70-72)CCG>CTG	p.P24L	FBXO11_uc002rwe.2_Missense_Mutation_p.P24L|FBXO11_uc002rwf.2_Missense_Mutation_p.P24L|FBXO11_uc002rwg.1_Missense_Mutation_p.P24L	NM_025133	NP_079409	Q86XK2	FBX11_HUMAN	F-box only protein 11 isoform 1	108					ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|ubiquitin ligase complex	protein binding|protein-arginine N-methyltransferase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)	2		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TGTTCTTTTCGGCAAAAGAGT	0.373													16	47					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	50780109	50780109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:50780109C>T	uc010fbq.2	-	9	2972	c.1495G>A	c.(1495-1497)GGA>AGA	p.G499R	NRXN1_uc002rxb.3_Missense_Mutation_p.G131R|NRXN1_uc002rxe.3_Missense_Mutation_p.G459R|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TTAGGATCTCCTTGCTTGGCA	0.408													4	100					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	51254760	51254760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:51254760C>T	uc010fbq.2	-	2	2129	c.652G>A	c.(652-654)GAG>AAG	p.E218K	NRXN1_uc002rxe.3_Missense_Mutation_p.E218K|NRXN1_uc002rxd.1_Missense_Mutation_p.E218K	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TCGCCCGCCTCGCACGGGCTT	0.706													4	5					0	0	1	0	0
PSME4	23198	broad.mit.edu	37	2	54133761	54133761	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:54133761G>A	uc002rxp.2	-	26	2973	c.2917C>T	c.(2917-2919)CGT>TGT	p.R973C	PSME4_uc010yop.1_Missense_Mutation_p.R859C|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Missense_Mutation_p.R348C|PSME4_uc010fbv.1_Missense_Mutation_p.R117C	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	973					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			GTAGATAAACGAAGAAGATCT	0.363													5	47					0	0	1	0	0
TSPYL6	388951	broad.mit.edu	37	2	54482133	54482133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:54482133C>T	uc002rxr.2	-	1	1277	c.1156G>A	c.(1156-1158)GAC>AAC	p.D386N	ACYP2_uc002rxq.3_Intron	NM_001003937	NP_001003937	Q8N831	TSYL6_HUMAN	TSPY-like 6	386					nucleosome assembly	nucleus					0						CTATGGGCGTCTTCACCCAAC	0.517													5	69					0	0	1	0	0
C2orf63	130162	broad.mit.edu	37	2	55408856	55408856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:55408856G>A	uc002ryi.2	-	10	1377	c.1031C>T	c.(1030-1032)CCT>CTT	p.P344L	C2orf63_uc002ryh.2_5'UTR|C2orf63_uc002ryj.2_Missense_Mutation_p.P222L	NM_152385	NP_689598	Q8NHS4	CB063_HUMAN	hypothetical protein LOC130162 isoform 1	344							binding			ovary(2)|central_nervous_system(1)	3			LUSC - Lung squamous cell carcinoma(58;0.179)|Lung(47;0.189)			TAATGGAAGAGGCTTTCCTCT	0.348													4	11					0	0	1	0	0
SMEK2	57223	broad.mit.edu	37	2	55826002	55826002	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:55826002G>A	uc002rzc.2	-	4	846	c.471C>T	c.(469-471)ATC>ATT	p.I157I	SMEK2_uc002rzb.2_Silent_p.I157I|SMEK2_uc002rzd.2_Silent_p.I157I|SMEK2_uc002rza.2_Silent_p.I33I	NM_001122964	NP_001116436	Q5MIZ7	P4R3B_HUMAN	SMEK homolog 2, suppressor of mek1 isoform 1	157						microtubule organizing center|nucleus	protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TTTCCCTACGGATAGGTGAGG	0.433													8	113					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60688313	60688313	+	Silent	SNP	G	A	A	rs115990154	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:60688313G>A	uc002sae.1	-	4	1962	c.1734C>T	c.(1732-1734)GCC>GCT	p.A578A	BCL11A_uc002sab.2_Silent_p.A578A|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Silent_p.A247A|BCL11A_uc010ypj.1_Silent_p.A544A|BCL11A_uc002sad.1_Silent_p.A426A|BCL11A_uc002saf.1_Silent_p.A544A	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	578					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			TGTGGCCCTCGGCCTCGGCCA	0.662			T	IGH@	B-CLL								6	248					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60688944	60688944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:60688944G>A	uc002sae.1	-	4	1331	c.1103C>T	c.(1102-1104)CCT>CTT	p.P368L	BCL11A_uc002sab.2_Missense_Mutation_p.P368L|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Missense_Mutation_p.P334L|BCL11A_uc002sad.1_Missense_Mutation_p.P216L|BCL11A_uc002saf.1_Missense_Mutation_p.P334L	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	368	Pro-rich.				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CTGGGAGGGAGGAGGGGCGGA	0.642			T	IGH@	B-CLL								33	540					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60773203	60773203	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:60773203G>A	uc002sae.1	-	2	516	c.288C>T	c.(286-288)TCC>TCT	p.S96S	BCL11A_uc002sab.2_Silent_p.S96S|BCL11A_uc002sac.2_Silent_p.S96S|BCL11A_uc010ypi.1_5'UTR|BCL11A_uc010ypj.1_Silent_p.S96S|BCL11A_uc002saf.1_Silent_p.S96S|BCL11A_uc010fcg.2_Silent_p.S96S	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	96	Required for nuclear body formation and for SUMO1 recruitment (By similarity).				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CCACGGGATTGGATGCTTTTT	0.473			T	IGH@	B-CLL								215	416					0	0	1	0	0
USP34	9736	broad.mit.edu	37	2	61441559	61441559	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:61441559G>A	uc002sbe.2	-	68	8340	c.8318C>T	c.(8317-8319)TCC>TTC	p.S2773F		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	2773					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			GAAATATGTGGAAAACATCAG	0.373													4	35					0	0	1	0	0
C2orf86	51057	broad.mit.edu	37	2	63720063	63720063	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:63720063G>A	uc002sch.2	-	2	533	c.87C>T	c.(85-87)TCC>TCT	p.S29S	C2orf86_uc002sci.1_Silent_p.S5S	NM_015910	NP_056994	O95876	FRITZ_HUMAN	hypothetical protein LOC51057 isoform 2	29					cilium morphogenesis|regulation of embryonic cell shape|regulation of protein localization|septin cytoskeleton organization	cilium axoneme|cytoplasm|cytoskeleton|plasma membrane					0						GATGGCAGAAGGAATCTCTAT	0.338													18	32					0	0	1	0	0
MDH1	4190	broad.mit.edu	37	2	63834042	63834042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:63834042C>T	uc002scj.1	+	9	982	c.926C>T	c.(925-927)TCA>TTA	p.S309L	MDH1_uc010ypv.1_Missense_Mutation_p.S327L|MDH1_uc010ypw.1_Missense_Mutation_p.S214L	NM_005917	NP_005908	P40925	MDHC_HUMAN	cytosolic malate dehydrogenase	309					gluconeogenesis|tricarboxylic acid cycle	centrosome|cytosol	L-malate dehydrogenase activity|malic enzyme activity			kidney(2)	2					NADH(DB00157)	AATGATTTCTCACGTGAGAAG	0.343													10	49					0	0	1	0	0
LOC388955	388955	broad.mit.edu	37	2	63849634	63849634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:63849634C>T	uc002sck.1	-	1	526	c.332G>A	c.(331-333)CGA>CAA	p.R111Q		NR_003131				SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;												0						GTAAACACATCGTTCCTCCAC	0.537													7	42					0	0	1	0	0
LOC388955	388955	broad.mit.edu	37	2	63849839	63849839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:63849839C>T	uc002sck.1	-	1	321	c.127G>A	c.(127-129)GAG>AAG	p.E43K		NR_003131				SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;												0						GGGGTCACCTCCCGGTGTACT	0.567													4	22					0	0	1	0	0
WDR92	116143	broad.mit.edu	37	2	68352445	68352446	+	RNA	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:68352445_68352446GG>AA	uc002sed.1	-	9		c.1095_1096CC>TT						Q96MX6	WDR92_HUMAN	Homo sapiens cDNA FLJ31741 fis, clone NT2RI2007148.						apoptosis|histone lysine methylation		methylated histone residue binding				0						GTGAGCCCTTGGGCCGCATCTC	0.5													5	48					0	0	1	0	0
WDR92	116143	broad.mit.edu	37	2	68364490	68364491	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:68364490_68364491GG>AA	uc002see.1	-	6	789_790	c.708_709CC>TT	c.(706-711)TTCCAT>TTTTAT	p.H237Y	WDR92_uc002sed.1_RNA|WDR92_uc002sef.1_Missense_Mutation_p.H237Y|WDR92_uc002seg.1_Missense_Mutation_p.H136Y	NM_138458	NP_612467	Q96MX6	WDR92_HUMAN	monad	237	WD 4.				apoptosis|histone lysine methylation		methylated histone residue binding				0						TCAAAAACATGGAACTTTCCTT	0.356													4	40					0	0	1	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69040512	69040512	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:69040512C>T	uc002seu.2	+	6	1129	c.765C>T	c.(763-765)TTC>TTT	p.F255F	ARHGAP25_uc010yqk.1_Silent_p.F230F|ARHGAP25_uc010fdg.2_Silent_p.F256F|ARHGAP25_uc010yql.1_Silent_p.F216F|ARHGAP25_uc002sev.2_Silent_p.F249F|ARHGAP25_uc002sew.2_Silent_p.F248F|ARHGAP25_uc002sex.2_Silent_p.F249F|ARHGAP25_uc010fdh.1_RNA|ARHGAP25_uc002sey.2_5'UTR	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	255	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						ACGAAGGGTTCCTGCTCTGTG	0.522													7	50					0	0	1	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69049583	69049583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:69049583C>T	uc002seu.2	+	10	1673	c.1309C>T	c.(1309-1311)CGT>TGT	p.R437C	ARHGAP25_uc010fdg.2_Missense_Mutation_p.R438C|ARHGAP25_uc010yql.1_Missense_Mutation_p.R398C|ARHGAP25_uc002sew.2_Missense_Mutation_p.R430C|ARHGAP25_uc002sex.2_Missense_Mutation_p.R431C|ARHGAP25_uc002sey.2_Missense_Mutation_p.R164C	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	437					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						AATGCAATCTCGTAAAAGGAC	0.483													12	77					0	0	1	0	0
BMP10	27302	broad.mit.edu	37	2	69093224	69093224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:69093224C>T	uc002sez.1	-	2	973	c.814G>A	c.(814-816)GAA>AAA	p.E272K		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	272					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						GAAATCATTTCATTCAGTTCC	0.463													4	18					0	0	1	0	0
ANTXR1	84168	broad.mit.edu	37	2	69409765	69409765	+	Silent	SNP	C	T	T	rs150501629		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:69409765C>T	uc002sfg.2	+	16	1682	c.1326C>T	c.(1324-1326)TCC>TCT	p.S442S		NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	442	Cytoplasmic (Potential).				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity	p.S442S(1)		ovary(2)|skin(2)	4						GGCCTTCTTCCCCCCGGAAGT	0.423									Familial_Infantile_Hemangioma				11	73					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70917972	70917972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:70917972C>T	uc002sgz.2	-	8	1260	c.795G>A	c.(793-795)ATG>ATA	p.M265I	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.M265I|ADD2_uc002sha.2_Intron|ADD2_uc002sgx.2_Missense_Mutation_p.M265I|ADD2_uc010fdt.1_Missense_Mutation_p.M265I|ADD2_uc002shc.1_Missense_Mutation_p.M265I|ADD2_uc002shd.1_Intron|ADD2_uc010fdu.1_Missense_Mutation_p.M281I	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	265					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						CTTCCTGCTCCATTTCCCCAT	0.537													17	70					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70923464	70923464	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:70923464C>T	uc002sgz.2	-	5	852	c.387G>A	c.(385-387)GGG>GGA	p.G129G	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Silent_p.G129G|ADD2_uc002sha.2_Silent_p.G129G|ADD2_uc002sgx.2_Silent_p.G129G|ADD2_uc010fdt.1_Silent_p.G129G|ADD2_uc002shc.1_Silent_p.G129G|ADD2_uc002shd.1_Silent_p.G129G|ADD2_uc010fdu.1_Silent_p.G145G	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	129					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						TGAGCCGCTCCCCTTTGGCCA	0.592													5	32					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70931508	70931508	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:70931508C>T	uc002sgz.2	-	4	732	c.267G>A	c.(265-267)CAG>CAA	p.Q89Q	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Silent_p.Q89Q|ADD2_uc002sha.2_Silent_p.Q89Q|ADD2_uc002sgx.2_Silent_p.Q89Q|ADD2_uc010fdt.1_Silent_p.Q89Q|ADD2_uc002shc.1_Silent_p.Q89Q|ADD2_uc002shd.1_Silent_p.Q89Q|ADD2_uc010fdu.1_Silent_p.Q105Q	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	89					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						AGTCCGCGATCTGTCGCAGGG	0.602													27	92					0	0	1	0	0
ATP6V1B1	525	broad.mit.edu	37	2	71187172	71187172	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:71187172C>T	uc002shj.2	+	6	636	c.549C>T	c.(547-549)ATC>ATT	p.I183I	ATP6V1B1_uc002shi.1_Silent_p.I183I|ATP6V1B1_uc010fdv.2_Silent_p.I183I|ATP6V1B1_uc010fdw.2_RNA|ATP6V1B1_uc010fdx.2_Silent_p.I141I	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	183					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						GCCAGAAGATCCCCATCTTCT	0.627													6	69					0	0	1	0	0
ZNF638	27332	broad.mit.edu	37	2	71653767	71653767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:71653767C>T	uc002shx.2	+	24	5087	c.4768C>T	c.(4768-4770)CGT>TGT	p.R1590C	ZNF638_uc002shy.2_Missense_Mutation_p.R1590C|ZNF638_uc002shz.2_Missense_Mutation_p.R1590C|ZNF638_uc002sia.2_Missense_Mutation_p.R1590C|ZNF638_uc002sib.1_3'UTR|ZNF638_uc010fed.2_Intron|ZNF638_uc002sic.2_Missense_Mutation_p.R687C|ZNF638_uc002sid.2_5'UTR	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	1590					RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						TTCCACTCCTCGTGGTGTTGA	0.418													4	34					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71748026	71748026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:71748026G>A	uc002sie.2	+	11	1421	c.1045G>A	c.(1045-1047)GAA>AAA	p.E349K	DYSF_uc010feg.2_Missense_Mutation_p.E380K|DYSF_uc010feh.2_Missense_Mutation_p.E349K|DYSF_uc002sig.3_Missense_Mutation_p.E349K|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.E349K|DYSF_uc010fef.2_Missense_Mutation_p.E380K|DYSF_uc010fei.2_Missense_Mutation_p.E380K|DYSF_uc010fek.2_Missense_Mutation_p.E381K|DYSF_uc010fej.2_Missense_Mutation_p.E350K|DYSF_uc010fel.2_Missense_Mutation_p.E350K|DYSF_uc010feo.2_Missense_Mutation_p.E381K|DYSF_uc010fem.2_Missense_Mutation_p.E350K|DYSF_uc010fen.2_Missense_Mutation_p.E381K|DYSF_uc002sif.2_Missense_Mutation_p.E350K	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	349	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GCCTGGGGACGAAGCGCCTGT	0.542													5	79					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71797810	71797810	+	Missense_Mutation	SNP	G	A	A	rs150877497		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:71797810G>A	uc002sie.2	+	29	3489	c.3113G>A	c.(3112-3114)CGA>CAA	p.R1038Q	DYSF_uc010feg.2_Missense_Mutation_p.R1069Q|DYSF_uc010feh.2_Missense_Mutation_p.R1024Q|DYSF_uc002sig.3_Missense_Mutation_p.R1024Q|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.R1038Q|DYSF_uc010fef.2_Missense_Mutation_p.R1055Q|DYSF_uc010fei.2_Missense_Mutation_p.R1055Q|DYSF_uc010fek.2_Missense_Mutation_p.R1056Q|DYSF_uc010fej.2_Missense_Mutation_p.R1025Q|DYSF_uc010fel.2_Missense_Mutation_p.R1025Q|DYSF_uc010feo.2_Missense_Mutation_p.R1070Q|DYSF_uc010fem.2_Missense_Mutation_p.R1039Q|DYSF_uc010fen.2_Missense_Mutation_p.R1056Q|DYSF_uc002sif.2_Missense_Mutation_p.R1039Q	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1038	Cytoplasmic (Potential).|Arg-rich.		R -> Q (in LGMD2B; uncertain pathogenicity).			cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TACACACACCGACGGCGGCGC	0.642													6	31					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71892420	71892420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:71892420C>T	uc002sie.2	+	46	5562	c.5186C>T	c.(5185-5187)TCC>TTC	p.S1729F	DYSF_uc010feg.2_Missense_Mutation_p.S1760F|DYSF_uc010feh.2_Missense_Mutation_p.S1736F|DYSF_uc002sig.3_Missense_Mutation_p.S1715F|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.S1750F|DYSF_uc010fef.2_Missense_Mutation_p.S1767F|DYSF_uc010fei.2_Missense_Mutation_p.S1746F|DYSF_uc010fek.2_Missense_Mutation_p.S1747F|DYSF_uc010fej.2_Missense_Mutation_p.S1737F|DYSF_uc010fel.2_Missense_Mutation_p.S1716F|DYSF_uc010feo.2_Missense_Mutation_p.S1761F|DYSF_uc010fem.2_Missense_Mutation_p.S1751F|DYSF_uc010fen.2_Missense_Mutation_p.S1768F|DYSF_uc002sif.2_Missense_Mutation_p.S1730F|DYSF_uc010yqy.1_Missense_Mutation_p.S610F|DYSF_uc010yqz.1_Missense_Mutation_p.S490F	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1729	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						AAAGAATATTCCATTGAAGAG	0.532													15	61					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71894588	71894588	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:71894588C>T	uc002sie.2	+	47	5659	c.5283C>T	c.(5281-5283)GTC>GTT	p.V1761V	DYSF_uc010feg.2_Silent_p.V1792V|DYSF_uc010feh.2_Silent_p.V1768V|DYSF_uc002sig.3_Silent_p.V1747V|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.V1782V|DYSF_uc010fef.2_Silent_p.V1799V|DYSF_uc010fei.2_Silent_p.V1778V|DYSF_uc010fek.2_Silent_p.V1779V|DYSF_uc010fej.2_Silent_p.V1769V|DYSF_uc010fel.2_Silent_p.V1748V|DYSF_uc010feo.2_Silent_p.V1793V|DYSF_uc010fem.2_Silent_p.V1783V|DYSF_uc010fen.2_Silent_p.V1800V|DYSF_uc002sif.2_Silent_p.V1762V|DYSF_uc010yqy.1_Silent_p.V642V|DYSF_uc010yqz.1_Silent_p.V522V	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1761	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						AGGGCCTGGTCCCGGAGCACG	0.642													10	69					0	0	1	0	0
RAB11FIP5	26056	broad.mit.edu	37	2	73315605	73315605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:73315605G>A	uc002siu.3	-	3	1382	c.1141C>T	c.(1141-1143)CGT>TGT	p.R381C	RAB11FIP5_uc002sit.3_Missense_Mutation_p.R303C	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	381					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						TCTGTGGAACGAGGCCCCTCC	0.637													13	61					0	0	1	0	0
EGR4	1961	broad.mit.edu	37	2	73519625	73519625	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:73519625G>A	uc010yrj.1	-	2	805	c.730C>T	c.(730-732)CCG>TCG	p.P244S	EGR4_uc010yrk.1_Missense_Mutation_p.P243S	NM_001965	NP_001956	Q05215	EGR4_HUMAN	early growth response 4	140						intracellular	nucleic acid binding|zinc ion binding				0						AGGTCCGGCGGACCCGGCAGC	0.682													9	18					0	0	1	0	0
ALMS1	7840	broad.mit.edu	37	2	73677856	73677856	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:73677856T>C	uc002sje.1	+	10	4316	c.4205T>C	c.(4204-4206)CTA>CCA	p.L1402P	ALMS1_uc002sjf.1_Missense_Mutation_p.L1358P|ALMS1_uc002sjg.2_Missense_Mutation_p.L788P|ALMS1_uc002sjh.1_Missense_Mutation_p.L788P	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1400	19.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GGTAGTCATCTAACTGAAGAG	0.473													3	31					0	0	1	0	0
ALMS1	7840	broad.mit.edu	37	2	73678219	73678219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:73678219C>T	uc002sje.1	+	10	4679	c.4568C>T	c.(4567-4569)TCC>TTC	p.S1523F	ALMS1_uc002sjf.1_Missense_Mutation_p.S1479F|ALMS1_uc002sjg.2_Missense_Mutation_p.S909F|ALMS1_uc002sjh.1_Missense_Mutation_p.S909F	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1521	21.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						ACCTCTCCTTCCTACTCACAA	0.488													12	41					0	0	1	0	0
ALMS1	7840	broad.mit.edu	37	2	73680069	73680069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:73680069C>T	uc002sje.1	+	10	6529	c.6418C>T	c.(6418-6420)CCT>TCT	p.P2140S	ALMS1_uc002sjf.1_Missense_Mutation_p.P2096S|ALMS1_uc002sjg.2_Missense_Mutation_p.P1526S|ALMS1_uc002sjh.1_Missense_Mutation_p.P1526S	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2138	34 X 47 AA approximate tandem repeat.|33.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						AACAGCTCTTCCTAGTTCCTT	0.413													8	17					0	0	1	0	0
MTHFD2	10797	broad.mit.edu	37	2	74435816	74435816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:74435816C>T	uc002skk.2	+	4	609	c.530C>T	c.(529-531)CCA>CTA	p.P177L	MTHFD2_uc002skj.2_Missense_Mutation_p.P75L|MTHFD2_uc010yro.1_Missense_Mutation_p.P75L|MTHFD2_uc010ffb.2_Missense_Mutation_p.P136L|MTHFD2_uc010yrp.1_Missense_Mutation_p.P13L	NM_006636	NP_006627	P13995	MTDC_HUMAN	methylenetetrahydrofolate dehydrogenase 2	177					folic acid-containing compound biosynthetic process|one-carbon metabolic process|tetrahydrofolate metabolic process	mitochondrion	magnesium ion binding|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NAD+) activity|methylenetetrahydrofolate dehydrogenase (NADP+) activity|phosphate binding|protein binding				0					NADH(DB00157)|Tetrahydrofolic acid(DB00116)	CCGGCTACTCCATGGGGTGTG	0.393													42	91					0	0	1	0	0
SLC4A5	57835	broad.mit.edu	37	2	74474338	74474338	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:74474338G>A	uc002sko.1	-	14	1886	c.1884C>T	c.(1882-1884)ATC>ATT	p.I628I	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Silent_p.I628I|SLC4A5_uc010ffc.1_Silent_p.I628I|SLC4A5_uc002skp.1_Silent_p.I564I|SLC4A5_uc002sks.1_Silent_p.I628I	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	628	Helical; (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						TATATTTGATGATAAAGCTGG	0.512													16	126					0	0	1	0	0
DCTN1	1639	broad.mit.edu	37	2	74590268	74590268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:74590268G>A	uc002skx.2	-	29	3693	c.3382C>T	c.(3382-3384)CCT>TCT	p.P1128S	SLC4A5_uc002skl.2_RNA|DCTN1_uc002skt.1_Missense_Mutation_p.P62S|DCTN1_uc002skv.2_Missense_Mutation_p.P994S|DCTN1_uc002sku.2_Missense_Mutation_p.P989S|DCTN1_uc002skw.1_Missense_Mutation_p.P1104S|DCTN1_uc010ffd.2_Missense_Mutation_p.P1103S|DCTN1_uc002sky.2_Missense_Mutation_p.P1086S	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	1128					cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						ACATGCAGAGGGGGCAGGGAT	0.532													4	49					0	0	1	0	0
C2orf65	130951	broad.mit.edu	37	2	74803645	74803645	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:74803645G>A	uc002smy.2	-	6	987	c.870C>T	c.(868-870)TTC>TTT	p.F290F	C2orf65_uc010ysa.1_Silent_p.F290F|C2orf65_uc002smz.2_Silent_p.F290F|C2orf65_uc010ffp.2_Silent_p.F8F|C2orf65_uc002smx.2_Silent_p.F46F	NM_138804	NP_620159	Q8TC57	CB065_HUMAN	hypothetical protein LOC130951	290					chromatin assembly|female gamete generation|RNA processing|spermatogenesis	integral to membrane				ovary(1)|pancreas(1)	2						AGAGTGTGATGAAGTCTCCTT	0.517													8	16					0	0	1	0	0
C2orf65	130951	broad.mit.edu	37	2	74808960	74808960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:74808960C>T	uc002smy.2	-	5	727	c.610G>A	c.(610-612)GGA>AGA	p.G204R	C2orf65_uc010ysa.1_Missense_Mutation_p.G204R|C2orf65_uc002smz.2_Missense_Mutation_p.G204R	NM_138804	NP_620159	Q8TC57	CB065_HUMAN	hypothetical protein LOC130951	204					chromatin assembly|female gamete generation|RNA processing|spermatogenesis	integral to membrane				ovary(1)|pancreas(1)	2						ATGTCAGTTCCCAGAATAGAA	0.333													10	42					0	0	1	0	0
HK2	3099	broad.mit.edu	37	2	75109255	75109255	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:75109255C>T	uc002snd.2	+	12	3654	c.1728C>T	c.(1726-1728)GAC>GAT	p.D576D		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	576	Catalytic.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						AGCTCTTTGACCACATTGTCC	0.587													12	77					0	0	1	0	0
TACR1	6869	broad.mit.edu	37	2	75276562	75276562	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:75276562G>A	uc002sng.2	-	5	1806	c.1221C>T	c.(1219-1221)TCC>TCT	p.S407S		NM_001058	NP_001049	P25103	NK1R_HUMAN	tachykinin receptor 1 isoform long	407	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|detection of abiotic stimulus|mechanosensory behavior	integral to plasma membrane	protein binding			ovary(1)	1					Aprepitant(DB00673)|Ketamine(DB01221)|Vapreotide(DB04894)	CTGTGGCCTAGGAGAGCACAT	0.562													5	67					0	0	1	0	0
TACR1	6869	broad.mit.edu	37	2	75278433	75278433	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:75278433G>A	uc002sng.2	-	4	1462	c.877C>T	c.(877-879)CTG>TTG	p.L293L	TACR1_uc002snh.2_Silent_p.L293L	NM_001058	NP_001049	P25103	NK1R_HUMAN	tachykinin receptor 1 isoform long	293	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|detection of abiotic stimulus|mechanosensory behavior	integral to plasma membrane	protein binding			ovary(1)	1					Aprepitant(DB00673)|Ketamine(DB01221)|Vapreotide(DB04894)	CTCATGGCCAGCCACATGATG	0.493													4	118					0	0	1	0	0
TACR1	6869	broad.mit.edu	37	2	75425991	75425991	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:75425991G>A	uc002sng.2	-	1	655	c.70C>T	c.(70-72)CAG>TAG	p.Q24*	TACR1_uc002snh.2_Nonsense_Mutation_p.Q24*	NM_001058	NP_001049	P25103	NK1R_HUMAN	tachykinin receptor 1 isoform long	24	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|detection of abiotic stimulus|mechanosensory behavior	integral to plasma membrane	protein binding			ovary(1)	1					Aprepitant(DB00673)|Ketamine(DB01221)|Vapreotide(DB04894)	TGCACGAACTGATTGGGTTCC	0.532													8	16					0	0	1	0	0
LRRTM4	80059	broad.mit.edu	37	2	76975919	76975919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:76975919C>T	uc002snr.2	-	4	2090	c.1675G>A	c.(1675-1677)GAA>AAA	p.E559K	LRRTM4_uc002snq.2_Missense_Mutation_p.E559K	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	559	Cytoplasmic (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		CCGGGGCTTTCGTCCTGCTCT	0.592													12	116					0	0	1	0	0
LRRTM4	80059	broad.mit.edu	37	2	77746442	77746442	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:77746442A>C	uc002snr.2	-	3	968	c.553T>G	c.(553-555)TTT>GTT	p.F185V	LRRTM4_uc002snq.2_Missense_Mutation_p.F185V|LRRTM4_uc002sns.2_Missense_Mutation_p.F185V|LRRTM4_uc002snt.2_Missense_Mutation_p.F186V	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	185	Extracellular (Potential).|LRR 6.					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		AAATCCAAAAAATCAAGATTC	0.418													2	6					0	0	1	0	0
REG1P	5969	broad.mit.edu	37	2	79363980	79363980	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:79363980G>A	uc002soa.1	-	4		c.334C>T			REG1P_uc002sob.1_RNA|REG1P_uc002soc.1_RNA					Homo sapiens mRNA for Reg-related sequence derived peptide-1, complete cds.												0						TTTAATCAGCGAAGCCACAAA	0.512													5	26					0	0	1	0	0
FUNDC2P2	388965	broad.mit.edu	37	2	84518338	84518338	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:84518338G>A	uc010ffz.1	+	1	533	c.396G>A	c.(394-396)AAG>AAA	p.K132K		NR_003663				RecName: Full=FUN14 domain-containing protein 2; AltName: Full=Hepatitis C virus core-binding protein 6; AltName: Full=Cervical cancer proto-oncogene 3 protein;          Short=HCC-3;												0						CATTTGTGAAGAAAAATGTTC	0.448													6	59					0	0	1	0	0
DNAH6	1768	broad.mit.edu	37	2	84811354	84811354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:84811354G>A	uc010fgb.2	+	15	2598	c.2461G>A	c.(2461-2463)GAA>AAA	p.E821K	DNAH6_uc002soo.2_Missense_Mutation_p.E400K|DNAH6_uc002sop.2_Missense_Mutation_p.E400K	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	821	Potential.|Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						CGAAGTGAATGAAGTAAAACT	0.279													5	40					0	0	1	0	0
C2orf89	129293	broad.mit.edu	37	2	85097370	85097370	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:85097370C>T	uc010ysl.1	-	2	737	c.648G>A	c.(646-648)TTG>TTA	p.L216L	C2orf89_uc002sou.3_Silent_p.L216L|C2orf89_uc010fgc.1_Silent_p.L216L	NM_001080824	NP_001074293	Q86V40	CB089_HUMAN	hypothetical protein LOC129293 precursor	216	Extracellular (Potential).					integral to membrane				ovary(1)	1						TCAACCCATTCAATGGATGGC	0.498													23	160					0	0	1	0	0
C2orf89	129293	broad.mit.edu	37	2	85097741	85097741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:85097741G>A	uc010ysl.1	-	2	366	c.277C>T	c.(277-279)CCC>TCC	p.P93S	C2orf89_uc002sou.3_Missense_Mutation_p.P93S|C2orf89_uc010fgc.1_Missense_Mutation_p.P93S	NM_001080824	NP_001074293	Q86V40	CB089_HUMAN	hypothetical protein LOC129293 precursor	93	Extracellular (Potential).					integral to membrane				ovary(1)	1						ATGGTATAGGGGTCTGTGAGA	0.557													3	15					0	0	1	0	0
TCF7L1	83439	broad.mit.edu	37	2	85529619	85529619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:85529619C>T	uc002soy.2	+	5	612	c.538C>T	c.(538-540)CCT>TCT	p.P180S		NM_031283	NP_112573	Q9HCS4	TF7L1_HUMAN	HMG-box transcription factor TCF-3	180	Pro-rich.				chromatin organization|regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|breast(1)|central_nervous_system(1)	3						TAATAAAGTTCCTGTCGTTCA	0.488													47	201					0	0	1	0	0
ELMOD3	84173	broad.mit.edu	37	2	85598230	85598230	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:85598230C>T	uc002spf.3	+	10	1047	c.382C>T	c.(382-384)CGA>TGA	p.R128*	ELMOD3_uc010fgg.2_RNA|ELMOD3_uc002spg.3_Nonsense_Mutation_p.R128*|ELMOD3_uc002sph.3_Nonsense_Mutation_p.R128*|ELMOD3_uc010ysn.1_Nonsense_Mutation_p.R128*|ELMOD3_uc010yso.1_RNA|ELMOD3_uc010ysp.1_RNA	NM_001135021	NP_001128493	Q96FG2	ELMD3_HUMAN	ELMO/CED-12 domain containing 3 isoform b	128					phagocytosis	cytoskeleton				ovary(2)	2						GCCAACTATTCGAAGGACTGG	0.547													33	125					0	0	1	0	0
POLR1A	25885	broad.mit.edu	37	2	86260899	86260899	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:86260899A>T	uc002sqs.2	-	28	4425	c.4046T>A	c.(4045-4047)CTT>CAT	p.L1349H	POLR1A_uc010ytb.1_Missense_Mutation_p.L715H|POLR1A_uc002sqt.1_Missense_Mutation_p.L372H	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	1349					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						TTCCATCAGAAGTTTAAAGAA	0.463													5	25					0	0	1	0	0
POLR1A	25885	broad.mit.edu	37	2	86302301	86302301	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:86302301G>A	uc002sqs.2	-	12	1842	c.1463C>T	c.(1462-1464)CCT>CTT	p.P488L		NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	488					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						GTGCACATTAGGGCCGTTGAT	0.572													3	20					0	0	1	0	0
C2orf51	200523	broad.mit.edu	37	2	88828842	88828842	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:88828842C>T	uc002stb.1	+	4	535	c.393C>T	c.(391-393)GAC>GAT	p.D131D		NM_152670	NP_689883	Q96LM6	TSC21_HUMAN	chromosome 2 open reading frame 51	131						nucleus				skin(1)	1						AGAGTGCTGACTTTCCGTGCC	0.572													16	66					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89156960	89156960	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:89156960C>T	uc010ytr.1	-	243		c.9965G>A			uc002sti.1_RNA|uc002stj.1_RNA					Parts of antibodies, mostly variable regions.																		TTGTGTTTCTCGTAGTCTGCT	0.572													4	35					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89246977	89246977	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:89246977C>T	uc010ytr.1	-	101		c.8082G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AGCTTAGGGGCTTTCCCTGGT	0.522													4	41					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89266222	89266222	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:89266222G>A	uc010ytr.1	-	94		c.7470C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AGAGCAGCAGGAGCCCCAGGA	0.557													13	88					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89416910	89416910	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:89416910C>T	uc010ytr.1	-	42		c.4692G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AGAGTGAATTCTGTCCCAGAT	0.498													7	13					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89442295	89442295	+	RNA	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:89442295T>G	uc010ytr.1	-	33		c.4122A>C			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GGTGGCTCTTTCCCCTGGAGA	0.522													4	93					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89513023	89513023	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:89513023C>T	uc010ytr.1	-	23		c.2865G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AGATGGGACCCCTGATTGCAA	0.493													11	57					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	90077780	90077780	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:90077780G>A	uc010fhm.2	+	13		c.1357G>A								Parts of antibodies, mostly variable regions.																		GGGAACCATGGAAACCCCAGC	0.577													5	70					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	90211770	90211770	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:90211770C>T	uc010fhm.2	+	25		c.3363C>T								Parts of antibodies, mostly variable regions.																		TCTCTTCCTCCTGCTACTCTG	0.517													4	60					0	0	1	0	0
ZNF2	7549	broad.mit.edu	37	2	95847020	95847020	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:95847020C>T	uc002suf.2	+	5	909	c.447C>T	c.(445-447)TCC>TCT	p.S149S	ZNF2_uc002sug.2_Silent_p.S107S|ZNF2_uc010yue.1_Silent_p.S111S|ZNF2_uc010fhs.2_Silent_p.S69S	NM_021088	NP_066574	Q9BSG1	ZNF2_HUMAN	zinc finger protein 2 isoform a	149					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(717;0.00768)		READ - Rectum adenocarcinoma(193;0.0222)		GTAAGAAATCCCTCTCCCGGG	0.522													11	69					0	0	1	0	0
PROM2	150696	broad.mit.edu	37	2	95947716	95947716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:95947716C>T	uc002suh.1	+	13	1728	c.1595C>T	c.(1594-1596)TCG>TTG	p.S532L	PROM2_uc002sui.2_Missense_Mutation_p.S532L|PROM2_uc002suj.2_Missense_Mutation_p.S186L|PROM2_uc002suk.2_Missense_Mutation_p.S532L|PROM2_uc002sul.2_Missense_Mutation_p.S58L|PROM2_uc002sum.2_RNA	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	532	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						ATGAACCTGTCGCAACTTCTT	0.627													5	51					0	0	1	0	0
GPAT2	150763	broad.mit.edu	37	2	96690336	96690336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:96690336C>T	uc002svf.2	-	15	1731	c.1508G>A	c.(1507-1509)AGC>AAC	p.S503N	GPAT2_uc002svd.2_Missense_Mutation_p.S322N|GPAT2_uc002sve.2_Missense_Mutation_p.S305N|GPAT2_uc002svg.2_Missense_Mutation_p.S382N|GPAT2_uc010yuh.1_Missense_Mutation_p.S432N|GPAT2_uc002svh.2_Missense_Mutation_p.S503N	NM_207328	NP_997211	Q6NUI2	GPAT2_HUMAN	glycerol-3-phosphate acyltransferase 2,	503					glycerol-3-phosphate metabolic process|phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity				0						CTGCAGCAGGCTCCGCAGCTG	0.657													20	48					0	0	1	0	0
ASTL	431705	broad.mit.edu	37	2	96789835	96789835	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:96789835G>A	uc010yui.1	-	9	1050	c.1050C>T	c.(1048-1050)GCC>GCT	p.A350A		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	350					proteolysis		metalloendopeptidase activity|zinc ion binding				0						GCTTTTTCAGGGCAGGGGACT	0.672													15	123					0	0	1	0	0
ASTL	431705	broad.mit.edu	37	2	96798394	96798394	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:96798394C>T	uc010yui.1	-	6	522	c.522G>A	c.(520-522)CAG>CAA	p.Q174Q		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	174					proteolysis		metalloendopeptidase activity|zinc ion binding				0						CCCGGCCCTTCTGGAGACACG	0.632													16	97					0	0	1	0	0
STARD7	56910	broad.mit.edu	37	2	96859049	96859049	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:96859049G>A	uc002svm.3	-	4	992	c.591C>T	c.(589-591)ATC>ATT	p.I197I	STARD7_uc002svl.2_5'UTR	NM_020151	NP_064536	Q9NQZ5	STAR7_HUMAN	START domain containing 7 precursor	197	START.					mitochondrion					0						CCTCCAGCTTGATTACCAGGG	0.413													7	57					0	0	1	0	0
SNRNP200	23020	broad.mit.edu	37	2	96950135	96950135	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:96950135G>A	uc002svu.2	-	31	4439	c.4353C>T	c.(4351-4353)TTC>TTT	p.F1451F	SNRNP200_uc002svt.2_Silent_p.F61F|SNRNP200_uc010yuj.1_RNA|SNRNP200_uc002svv.1_5'UTR	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	1451	Helicase ATP-binding 2.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						CATCCACCACGAAGAGGTTGA	0.557													15	50					0	0	1	0	0
CNNM4	26504	broad.mit.edu	37	2	97427864	97427864	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:97427864C>T	uc002swx.2	+	1	1226	c.1128C>T	c.(1126-1128)ATC>ATT	p.I376I		NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	376					biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane				breast(2)|ovary(1)	3						TAGAGGATATCATGACCCAGC	0.517													6	60					0	0	1	0	0
CNNM4	26504	broad.mit.edu	37	2	97464958	97464958	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:97464958C>T	uc002swx.2	+	4	1944	c.1846C>T	c.(1846-1848)CTG>TTG	p.L616L	CNNM4_uc010yuy.1_Silent_p.L103L	NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	616					biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane				breast(2)|ovary(1)	3						CATCCTCATCCTGCAGGTGAG	0.597													8	77					0	0	1	0	0
CNNM4	26504	broad.mit.edu	37	2	97475081	97475082	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:97475081_97475082GG>AA	uc002swx.2	+	7	2253_2254	c.2155_2156GG>AA	c.(2155-2157)GGG>AAG	p.G719K	CNNM4_uc010yuy.1_Missense_Mutation_p.R235Q	NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	719					biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane				breast(2)|ovary(1)	3						GTACCAGAACGGGCTGCTGGCT	0.594													5	40					0	0	1	0	0
TMEM131	23505	broad.mit.edu	37	2	98375486	98375486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:98375486G>A	uc002syh.3	-	40	5466	c.5237C>T	c.(5236-5238)TCG>TTG	p.S1746L	TMEM131_uc002syg.2_Missense_Mutation_p.S126L	NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	1746	Ser-rich.					integral to membrane				ovary(4)|central_nervous_system(2)	6						CTGATTGCACGATCGAGATAA	0.483													10	81					0	0	1	0	0
VWA3B	200403	broad.mit.edu	37	2	98810890	98810890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:98810890G>A	uc002syo.2	+	12	1936	c.1672G>A	c.(1672-1674)GAA>AAA	p.E558K	VWA3B_uc010yvh.1_Missense_Mutation_p.E408K|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Missense_Mutation_p.E77K|VWA3B_uc002sym.2_Missense_Mutation_p.E558K|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.E215K|VWA3B_uc002syp.1_5'UTR	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	558	VWFA.									ovary(3)|large_intestine(2)|skin(1)	6						TGCTTGGCGGGAACAACTTGC	0.383													7	202					0	0	1	0	0
VWA3B	200403	broad.mit.edu	37	2	98846579	98846579	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:98846579C>T	uc002syo.2	+	16	2481	c.2217C>T	c.(2215-2217)GTC>GTT	p.V739V	VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Silent_p.V258V|VWA3B_uc002sym.2_Silent_p.V739V|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Silent_p.V396V|VWA3B_uc002syp.1_Silent_p.V131V|VWA3B_uc002syq.1_Silent_p.V15V|VWA3B_uc002syr.1_Silent_p.V56V	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	739										ovary(3)|large_intestine(2)|skin(1)	6						AATCTGATGTCGATTCAACAC	0.388													6	44					0	0	1	0	0
CNGA3	1261	broad.mit.edu	37	2	98996762	98996762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:98996762G>A	uc002syt.2	+	4	757	c.340G>A	c.(340-342)GAA>AAA	p.E114K	CNGA3_uc002syu.2_Missense_Mutation_p.E114K|CNGA3_uc010fij.2_Missense_Mutation_p.E118K	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	114					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						GTCCAGCCAAGAAAGCAATGC	0.607													7	55					0	0	1	0	0
MGAT4A	11320	broad.mit.edu	37	2	99279639	99279639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:99279639G>A	uc002sze.2	-	5	721	c.407C>T	c.(406-408)TCA>TTA	p.S136L	MGAT4A_uc010yvm.1_Missense_Mutation_p.S8L|MGAT4A_uc010fil.2_5'UTR|MGAT4A_uc010fim.1_Missense_Mutation_p.S8L	NM_012214	NP_036346	Q9UM21	MGT4A_HUMAN	alpha-1,3-mannosyl-glycoprotein	136	Lumenal (Potential).				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			skin(1)	1						CATGACTATTGAAACTGGaaa	0.308													5	89					0	0	1	0	0
C2orf55	343990	broad.mit.edu	37	2	99413844	99413844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:99413844C>T	uc002szf.1	-	8	2867	c.2573G>A	c.(2572-2574)GGA>GAA	p.G858E		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	858											0						GGCTTGCTTTCCTGGTTCAGA	0.622													10	110					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100210236	100210236	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:100210236G>A	uc002tag.2	-	14	2123	c.1887C>T	c.(1885-1887)CCC>CCT	p.P629P	AFF3_uc002taf.2_Silent_p.P654P|AFF3_uc010fiq.1_Silent_p.P629P|AFF3_uc010yvr.1_Silent_p.P782P|AFF3_uc002tah.1_Silent_p.P654P	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	629					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TGTTGCCACAGGGCCTGGTTT	0.721													10	57					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100210314	100210314	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:100210314G>A	uc002tag.2	-	14	2045	c.1809C>T	c.(1807-1809)CAC>CAT	p.H603H	AFF3_uc002taf.2_Silent_p.H628H|AFF3_uc010fiq.1_Silent_p.H603H|AFF3_uc010yvr.1_Silent_p.H756H|AFF3_uc002tah.1_Silent_p.H628H	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	603					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						CCTCGGGCCGGTGGCAGTTGG	0.761													7	13					0	0	1	0	0
LONRF2	164832	broad.mit.edu	37	2	100919445	100919445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:100919445C>T	uc002tal.3	-	3	1499	c.859G>A	c.(859-861)GAA>AAA	p.E287K	LONRF2_uc010yvs.1_RNA	NM_198461	NP_940863	Q1L5Z9	LONF2_HUMAN	LON peptidase N-terminal domain and ring finger	287	TPR 5.				proteolysis		ATP-dependent peptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2						TAGAGAAATTCCTTTAACACT	0.393													13	57					0	0	1	0	0
TBC1D8	11138	broad.mit.edu	37	2	101654089	101654089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:101654089C>T	uc010fiv.2	-	8	1443	c.1312G>A	c.(1312-1314)GAG>AAG	p.E438K	TBC1D8_uc010yvw.1_Missense_Mutation_p.E453K|TBC1D8_uc002tau.3_Missense_Mutation_p.E195K	NM_001102426	NP_001095896	O95759	TBCD8_HUMAN	TBC1 domain family, member 8	438					blood circulation|positive regulation of cell proliferation	intracellular|membrane	calcium ion binding|Rab GTPase activator activity			ovary(3)	3						TCACTCTCCTCGCTATTTTGA	0.537													9	124					0	0	1	0	0
IL1R2	7850	broad.mit.edu	37	2	102626190	102626190	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:102626190C>T	uc002tbm.2	+	3	463	c.234C>T	c.(232-234)GTC>GTT	p.V78V	IL1R2_uc002tbn.2_Silent_p.V78V|IL1R2_uc002tbo.1_Silent_p.V78V	NM_004633	NP_004624	P27930	IL1R2_HUMAN	interleukin 1 receptor, type II precursor	78	Extracellular (Potential).|Ig-like C2-type 1.				immune response	integral to membrane|plasma membrane	interleukin-1, Type II, blocking receptor activity			ovary(1)|breast(1)	2					Anakinra(DB00026)	CTAGGACGGTCCCAGGAGAAG	0.597													62	200					0	0	1	0	0
IL1R2	7850	broad.mit.edu	37	2	102644754	102644754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:102644754G>A	uc002tbm.2	+	9	1326	c.1097G>A	c.(1096-1098)GGA>GAA	p.G366E	IL1R2_uc002tbn.2_Missense_Mutation_p.G366E	NM_004633	NP_004624	P27930	IL1R2_HUMAN	interleukin 1 receptor, type II precursor	366	Helical; (Potential).				immune response	integral to membrane|plasma membrane	interleukin-1, Type II, blocking receptor activity			ovary(1)|breast(1)	2					Anakinra(DB00026)	GTTTTGGGGGGAATATGGATG	0.512													28	61					0	0	1	0	0
IL1RL1	9173	broad.mit.edu	37	2	102968334	102968334	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:102968334C>T	uc002tbu.1	+	11	1895	c.1624C>T	c.(1624-1626)CCC>TCC	p.P542S	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	542	Cytoplasmic (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						AAGCAAAATTCCCAGAAAGGC	0.488													5	80					0	0	1	0	0
IL18R1	8809	broad.mit.edu	37	2	103006655	103006655	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:103006655G>A	uc002tbw.3	+	9	1239	c.1089G>A	c.(1087-1089)ACG>ACA	p.T363T	IL18R1_uc010ywc.1_Silent_p.T362T|IL18R1_uc010ywd.1_Silent_p.T207T|IL18R1_uc010fiy.2_Silent_p.T363T	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	363	Cytoplasmic (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						GACATTTAACGAGAAGAGATG	0.333													9	45					0	0	1	0	0
IL18R1	8809	broad.mit.edu	37	2	103011069	103011069	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:103011069G>A	uc002tbw.3	+	10	1402	c.1252G>A	c.(1252-1254)GAT>AAT	p.D418N	IL18R1_uc010ywc.1_Missense_Mutation_p.D417N|IL18R1_uc010ywd.1_Missense_Mutation_p.D262N|IL18R1_uc010fiy.2_Missense_Mutation_p.D418N	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	418	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						ATTTGAAAGGGATGTAGTGCC	0.423													9	19					0	0	1	0	0
IL18RAP	8807	broad.mit.edu	37	2	103067337	103067337	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:103067337T>C	uc002tbx.2	+	11	1724	c.1240T>C	c.(1240-1242)TAT>CAT	p.Y414H	IL18RAP_uc010fiz.2_Missense_Mutation_p.Y272H	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	414	TIR.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						TTTCGTATCCTATGCAAAATG	0.338													6	65					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103090277	103090277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:103090277C>T	uc002tbz.3	+	1	516	c.59C>T	c.(58-60)GCT>GTT	p.A20V		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	20					regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						CTGCTAGTGGCTCTTGAGTGT	0.483													22	59					0	0	1	0	0
SLC9A2	6549	broad.mit.edu	37	2	103299894	103299894	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:103299894C>T	uc002tca.2	+	4	1321	c.1179C>T	c.(1177-1179)TTC>TTT	p.F393F		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	393	Helical; Name=K/M9; (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						ACTGGGCCTTCGTCTGCTTCA	0.507													16	21					0	0	1	0	0
MFSD9	84804	broad.mit.edu	37	2	103343331	103343331	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:103343331G>A	uc002tcb.2	-	4	468	c.400C>T	c.(400-402)CTG>TTG	p.L134L	MFSD9_uc010fja.2_RNA	NM_032718	NP_116107	Q8NBP5	MFSD9_HUMAN	major facilitator superfamily domain containing	134	Helical; (Potential).				transmembrane transport	integral to membrane|plasma membrane	transporter activity			ovary(2)|breast(2)	4						AGGACAAACAGAAACACATTG	0.488													6	45					0	0	1	0	0
TMEM182	130827	broad.mit.edu	37	2	103431343	103431343	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:103431343C>T	uc010fjb.2	+	5	793	c.606C>T	c.(604-606)TTC>TTT	p.F202F	TMEM182_uc002tcc.3_Silent_p.F159F|TMEM182_uc002tcd.3_Silent_p.F106F|TMEM182_uc010ywe.1_RNA	NM_144632	NP_653233	Q6ZP80	TM182_HUMAN	transmembrane protein 182 precursor	202	Helical; (Potential).					integral to membrane					0						GGTCATTTTTCCTGGCCCCAG	0.448													8	13					0	0	1	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105890130	105890130	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:105890130G>A	uc002tcq.2	-	9	1767	c.1683C>T	c.(1681-1683)TTC>TTT	p.F561F	TGFBRAP1_uc010fjc.2_Silent_p.F330F|TGFBRAP1_uc002tcr.3_Silent_p.F561F	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	561					regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						GTCTCTTGGTGAAAACCTGAA	0.413													4	47					0	0	1	0	0
RGPD3	653489	broad.mit.edu	37	2	107049648	107049648	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:107049648C>A	uc010ywi.1	-	16	2356	c.2299G>T	c.(2299-2301)GGT>TGT	p.G767C		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	767					intracellular transport		binding			ovary(1)	1						CGCAAAGAACCATTTTTATAG	0.383													9	210					0.000442599	0.000447024	1	1	0
ST6GAL2	84620	broad.mit.edu	37	2	107423316	107423316	+	Missense_Mutation	SNP	C	T	T	rs141942088		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:107423316C>T	uc002tdq.2	-	6	1527	c.1408G>A	c.(1408-1410)GAG>AAG	p.E470K	ST6GAL2_uc002tdr.2_Missense_Mutation_p.E470K	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	470	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						TAGTACAGCTCGTGGTAGTGG	0.557													8	48					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459508	107459508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:107459508G>A	uc002tdq.2	-	2	1045	c.926C>T	c.(925-927)TCC>TTC	p.S309F	ST6GAL2_uc002tdr.2_Missense_Mutation_p.S309F|ST6GAL2_uc002tds.3_Missense_Mutation_p.S309F	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	309	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CTCGCCCAAGGAAGAGTTGAG	0.682													3	21					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460341	107460341	+	Silent	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:107460341G>T	uc002tdq.2	-	2	212	c.93C>A	c.(91-93)ACC>ACA	p.T31T	ST6GAL2_uc002tdr.2_Silent_p.T31T|ST6GAL2_uc002tds.3_Silent_p.T31T	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	31	Helical; Signal-anchor for type II membrane protein; (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GGTTGCTGTCGGTGAAGTAGA	0.572													4	55					0.150653	0.151501	1	1	0
RGPD4	285190	broad.mit.edu	37	2	108475843	108475843	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:108475843C>T	uc010ywk.1	+	11	1549	c.1467C>T	c.(1465-1467)CTC>CTT	p.L489L	RGPD4_uc002tdu.2_5'UTR|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	489					intracellular transport		binding			skin(2)	2						AGGTATTTCTCCTTGGAGTAG	0.318													8	62					0	0	1	0	0
RGPD4	285190	broad.mit.edu	37	2	108477240	108477240	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:108477240T>G	uc010ywk.1	+	13	1859	c.1777T>G	c.(1777-1779)TTT>GTT	p.F593V	RGPD4_uc002tdu.2_5'UTR|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	593	TPR 2.				intracellular transport		binding			skin(2)	2						TCTTAATTCTTTTTATGATCA	0.323													3	82					0	0	1	0	0
RGPD4	285190	broad.mit.edu	37	2	108487731	108487731	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:108487731G>A	uc010ywk.1	+	20	3353	c.3271G>A	c.(3271-3273)GAG>AAG	p.E1091K	RGPD4_uc002tdu.2_Missense_Mutation_p.E278K|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1091	RanBD1 1.				intracellular transport		binding			skin(2)	2						TCTCAAAAACGAGGTCAATGG	0.408													10	126					0	0	1	0	0
SULT1C4	27233	broad.mit.edu	37	2	108994898	108994898	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:108994898G>A	uc002tea.1	+	1	478	c.105G>A	c.(103-105)TGG>TGA	p.W35*	SULT1C4_uc002tdz.2_Nonsense_Mutation_p.W35*|SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Nonsense_Mutation_p.W35*	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	35					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						GTGACATCTGGGATAAGATCT	0.473													21	126					0	0	1	0	0
GCC2	9648	broad.mit.edu	37	2	109104200	109104200	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:109104200C>T	uc002tec.2	+	17	4130	c.3976C>T	c.(3976-3978)CGA>TGA	p.R1326*	GCC2_uc002ted.2_Nonsense_Mutation_p.R1225*	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	1326	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						CTACAAAGTCCGAGTTCATAA	0.358													7	44					0	0	1	0	0
RANBP2	5903	broad.mit.edu	37	2	109347931	109347931	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:109347931G>A	uc002tem.3	+	4	531	c.405_splice	c.e4+1	p.K135_splice		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2						carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TAAACTAAAGGTAAACAAACA	0.323													16	116					0	0	1	0	0
ACOXL	55289	broad.mit.edu	37	2	111556645	111556645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:111556645G>A	uc002tgr.3	+	7	739	c.515G>A	c.(514-516)GGA>GAA	p.G172E	ACOXL_uc010fkc.2_Missense_Mutation_p.G172E|ACOXL_uc010yxk.1_Missense_Mutation_p.G172E	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	172					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						TTGTACCCAGGAGTCACAGCT	0.507													18	86					0	0	1	0	0
ACOXL	55289	broad.mit.edu	37	2	111691128	111691128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:111691128C>T	uc002tgr.3	+	12	1192	c.968C>T	c.(967-969)TCG>TTG	p.S323L	ACOXL_uc010fkc.2_Missense_Mutation_p.S323L|ACOXL_uc010yxk.1_Missense_Mutation_p.S323L	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	323					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						AACAGTCGCTCGCTGCAGGCT	0.627													4	42					0	0	1	0	0
MERTK	10461	broad.mit.edu	37	2	112702606	112702606	+	Silent	SNP	C	T	T	rs148690514	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:112702606C>T	uc002thk.1	+	3	674	c.552C>T	c.(550-552)ATC>ATT	p.I184I	MERTK_uc002thl.1_Silent_p.I8I	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	184	Extracellular (Potential).|Ig-like C2-type 1.				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						ATGAAGAGATCGTGTCTGATC	0.398													4	19					0	0	1	0	0
MERTK	10461	broad.mit.edu	37	2	112751959	112751959	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:112751959G>A	uc002thk.1	+	9	1550	c.1428G>A	c.(1426-1428)GTG>GTA	p.V476V	MERTK_uc002thl.1_Silent_p.V300V	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	476	Fibronectin type-III 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						GTGATCCAGTGAAAATATTTA	0.537													9	84					0	0	1	0	0
MERTK	10461	broad.mit.edu	37	2	112786120	112786120	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:112786120G>A	uc002thk.1	+	19	2801	c.2679G>A	c.(2677-2679)CTG>CTA	p.L893L	MERTK_uc002thl.1_Silent_p.L717L	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	893	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						TTGCTCCACTGGACTTGAACA	0.542													12	101					0	0	1	0	0
MERTK	10461	broad.mit.edu	37	2	112786387	112786387	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:112786387C>T	uc002thk.1	+	19	3068	c.2946C>T	c.(2944-2946)CCC>CCT	p.P982P	MERTK_uc002thl.1_Silent_p.P806P	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	982	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						GCTCATTGCCCGATGAACTTT	0.507													4	46					0	0	1	0	0
ZC3H8	84524	broad.mit.edu	37	2	112996074	112996074	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:112996074G>A	uc002thp.2	-	3	294	c.188C>T	c.(187-189)TCG>TTG	p.S63L		NM_032494	NP_115883	Q8N5P1	ZC3H8_HUMAN	zinc finger CCCH-type containing 8	63					apoptosis|negative regulation of T cell differentiation in thymus|negative regulation of transcription, DNA-dependent|positive regulation of thymocyte apoptosis|response to antibiotic|T cell homeostasis	nucleus	RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TCTATGCAGCGAACTTTTTGG	0.303													5	68					0	0	1	0	0
ZC3H6	376940	broad.mit.edu	37	2	113089541	113089541	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:113089541T>G	uc002thq.1	+	12	3440	c.3046T>G	c.(3046-3048)TCT>GCT	p.S1016A		NM_198581	NP_940983	P61129	ZC3H6_HUMAN	zinc finger CCCH-type domain containing 6	1016							nucleic acid binding|zinc ion binding			ovary(3)|central_nervous_system(1)	4						AACTAGCAATTCTGGTTCCGG	0.502													3	21					0	0	1	0	0
IL1A	3552	broad.mit.edu	37	2	113532692	113532692	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:113532692C>T	uc002tig.2	-	7	1728	c.768G>A	c.(766-768)GGG>GGA	p.G256G		NM_000575	NP_000566	P01583	IL1A_HUMAN	interleukin 1, alpha proprotein	256					anti-apoptosis|apoptosis|cell proliferation|cellular response to heat|cytokine-mediated signaling pathway|fever generation|immune response|negative regulation of cell proliferation|positive regulation of angiogenesis|positive regulation of cell division|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of mitosis|positive regulation vascular endothelial growth factor production|response to copper ion	cytosol|extracellular space	copper ion binding|cytokine activity|interleukin-1 receptor binding			lung(1)	1						AGGGTGGCCCCCCTGCCAAGC	0.478													7	47					0	0	1	0	0
IL1B	3553	broad.mit.edu	37	2	113588001	113588001	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:113588001G>A	uc002tii.1	-	7	834	c.747C>T	c.(745-747)TTC>TTT	p.F249F	IL1B_uc002tih.1_Silent_p.F218F	NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein	249					activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	TCCCTCCCAGGAAGACGGGCA	0.478													15	110					0	0	1	0	0
IL1F9	56300	broad.mit.edu	37	2	113742473	113742473	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:113742473C>T	uc002tio.1	+	5	426	c.357C>T	c.(355-357)TTC>TTT	p.F119F	IL1F9_uc010fkr.1_Silent_p.F84F	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	119					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						CCTTCCTTTTCTACCGTGCCA	0.517													10	48					0	0	1	0	0
IL1F6	27179	broad.mit.edu	37	2	113763579	113763579	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:113763579G>A	uc010yxr.1	+	2	39	c.39G>A	c.(37-39)GGG>GGA	p.G13G		NM_014440	NP_055255	Q9UHA7	IL36A_HUMAN	interleukin 1 family, member 6 (epsilon)	13					immune response|inflammatory response	extracellular space	cytokine activity|interleukin-1 receptor binding				0						CTCAGCAGGGGAGCATTCAGG	0.468													6	56					0	0	1	0	0
IL1F6	27179	broad.mit.edu	37	2	113765450	113765450	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:113765450G>A	uc010yxr.1	+	4	306	c.306G>A	c.(304-306)GTG>GTA	p.V102V		NM_014440	NP_055255	Q9UHA7	IL36A_HUMAN	interleukin 1 family, member 6 (epsilon)	102					immune response|inflammatory response	extracellular space	cytokine activity|interleukin-1 receptor binding				0						CCGAGCCTGTGAAGTCCTTTC	0.488													7	89					0	0	1	0	0
IL1F10	84639	broad.mit.edu	37	2	113832816	113832816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:113832816C>T	uc002tiu.2	+	5	409	c.334C>T	c.(334-336)CTT>TTT	p.L112F	IL1F10_uc002tiv.2_Missense_Mutation_p.L112F|IL1F10_uc002tiw.2_Missense_Mutation_p.L104F	NM_173161	NP_775184	Q8WWZ1	IL1FA_HUMAN	interleukin 1 family, member 10	112						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity			ovary(1)	1						CGCCTTCAGGCTTGAGGCTGC	0.607													10	99					0	0	1	0	0
IL1RN	3557	broad.mit.edu	37	2	113887169	113887169	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:113887169C>T	uc002tjb.2	+	2	197	c.133C>T	c.(133-135)CAG>TAG	p.Q45*	IL1RN_uc002tix.1_RNA|IL1RN_uc002tiy.2_Nonsense_Mutation_p.Q11*|IL1RN_uc002tiz.2_Nonsense_Mutation_p.Q48*|IL1RN_uc002tja.2_Nonsense_Mutation_p.Q27*	NM_173842	NP_776214	P18510	IL1RA_HUMAN	interleukin 1 receptor antagonist isoform 1	45					immune response|inflammatory response|response to glucocorticoid stimulus	centrosome|extracellular space|nucleus|plasma membrane	cytokine activity|interleukin-1 receptor antagonist activity			skin(2)	2					Anakinra(DB00026)	GGATGTTAACCAGAAGACCTT	0.338									Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				14	112					0	0	1	0	0
PSD4	23550	broad.mit.edu	37	2	113940670	113940670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:113940670G>A	uc002tjc.2	+	2	820	c.637G>A	c.(637-639)GAA>AAA	p.E213K	PSD4_uc002tjd.2_5'UTR|PSD4_uc002tje.2_Missense_Mutation_p.E212K|PSD4_uc002tjf.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	213					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						AGACTCAGGGGAAGACAGCAG	0.632													6	46					0	0	1	0	0
PAX8	7849	broad.mit.edu	37	2	113999205	113999205	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:113999205C>T	uc010yxt.1	-	7	866	c.700G>A	c.(700-702)GAG>AAG	p.E234K	PAX8_uc010yxu.1_Missense_Mutation_p.E234K|PAX8_uc010yxv.1_Missense_Mutation_p.E234K|PAX8_uc002tjm.2_Missense_Mutation_p.E234K|PAX8_uc002tjn.2_Missense_Mutation_p.E234K|PAX8_uc010fku.1_Missense_Mutation_p.E234K|LOC654433_uc002tjq.3_Intron|LOC654433_uc010fks.2_Intron|LOC654433_uc010fkt.2_Intron|LOC654433_uc002tjr.3_Intron	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	234					branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						TCGAGCGGCTCGAGGTGGTGC	0.627			T	PPARG	follicular thyroid		Thyroid dysgenesis 						4	35					0	0	1	0	0
FOXD4L1	200350	broad.mit.edu	37	2	114257127	114257127	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:114257127C>T	uc002tjw.3	+	1	467	c.294C>T	c.(292-294)GCC>GCT	p.A98A		NM_012184	NP_036316	Q9NU39	FX4L1_HUMAN	forkhead box D4-like 1	98					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						CTGCGGCGGCCTCTGAAGATG	0.682													15	138					0	0	1	0	0
FOXD4L1	200350	broad.mit.edu	37	2	114257370	114257370	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:114257370C>T	uc002tjw.3	+	1	710	c.537C>T	c.(535-537)ACC>ACT	p.T179T		NM_012184	NP_036316	Q9NU39	FX4L1_HUMAN	forkhead box D4-like 1	179	Fork-head.				axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						GCAAGGGCACCTACTGGAGCC	0.647													32	403					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119751998	119751998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:119751998C>T	uc002tln.1	+	17	1597	c.1465C>T	c.(1465-1467)CGG>TGG	p.R489W	MARCO_uc010yyf.1_Missense_Mutation_p.R411W	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	489	SRCR.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TGTTCAGTGTCGGGGCACGGA	0.552													5	51					0	0	1	0	0
C1QL2	165257	broad.mit.edu	37	2	119915315	119915315	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:119915315G>A	uc002tlo.2	-	1	1157	c.531C>T	c.(529-531)TTC>TTT	p.F177F		NM_182528	NP_872334	Q7Z5L3	C1QL2_HUMAN	complement component 1, q subcomponent-like 2	177	C1q.					collagen				pancreas(1)	1						CCACGTCATCGAACTTCAGCA	0.577										HNSCC(49;0.14)			8	20					0	0	1	0	0
STEAP3	55240	broad.mit.edu	37	2	120005733	120005733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:120005733C>T	uc002tlp.2	+	4	1128	c.971C>T	c.(970-972)CCG>CTG	p.P324L	STEAP3_uc002tlq.2_Missense_Mutation_p.P334L|STEAP3_uc002tlr.2_Missense_Mutation_p.P324L|STEAP3_uc010fle.2_Missense_Mutation_p.P324L	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	324	Ferric oxidoreductase.|Helical; (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						TTCTGCTTGCCGCTGCGCCGC	0.647													7	42					0	0	1	0	0
TMEM37	140738	broad.mit.edu	37	2	120194767	120194767	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:120194767C>T	uc002tly.2	+	2	358	c.324C>T	c.(322-324)TTC>TTT	p.F108F		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	108	Helical; (Potential).					integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						GCCTGGAGTTCCTCATGGTGT	0.652													14	140					0	0	1	0	0
PCDP1	200373	broad.mit.edu	37	2	120362843	120362843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:120362843G>A	uc002tmb.2	+	12	1345	c.253G>A	c.(253-255)GAG>AAG	p.E85K	PCDP1_uc010yyq.1_Missense_Mutation_p.E215K	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	371						cilium	calmodulin binding				0	Colorectal(110;0.196)					CATTCACGAAGAGATGGAAAA	0.383													4	33					0	0	1	0	0
PCDP1	200373	broad.mit.edu	37	2	120383175	120383175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:120383175G>A	uc002tmb.2	+	16	1661	c.569G>A	c.(568-570)CGA>CAA	p.R190Q	PCDP1_uc010yyq.1_Missense_Mutation_p.R320Q	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	476						cilium	calmodulin binding				0	Colorectal(110;0.196)					ATTCAGGGACGATTATTCAAT	0.388													3	10					0	0	1	0	0
PCDP1	200373	broad.mit.edu	37	2	120385251	120385251	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:120385251C>T	uc002tmb.2	+	17	1773	c.681C>T	c.(679-681)TTC>TTT	p.F227F	PCDP1_uc010yyq.1_Silent_p.F357F	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	513						cilium	calmodulin binding				0	Colorectal(110;0.196)					TCAAATTCTTCCTGAGGCGGA	0.468													7	95					0	0	1	0	0
TMEM177	80775	broad.mit.edu	37	2	120438787	120438787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:120438787C>T	uc010flg.1	+	2	831	c.358C>T	c.(358-360)CAT>TAT	p.H120Y	TMEM177_uc002tme.2_Intron|TMEM177_uc002tmc.1_Missense_Mutation_p.H120Y|TMEM177_uc002tmd.2_Missense_Mutation_p.H120Y|TMEM177_uc010flh.2_Intron	NM_001105198	NP_001098668	Q53S58	TM177_HUMAN	transmembrane protein 177	120						integral to membrane				ovary(1)	1	Colorectal(110;0.196)					CAACACTAACCATCCCGTGGT	0.602													37	247					0	0	1	0	0
GLI2	2736	broad.mit.edu	37	2	121685033	121685033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:121685033G>A	uc010flp.2	+	2	275	c.245G>A	c.(244-246)GGT>GAT	p.G82D	GLI2_uc010yyu.1_Missense_Mutation_p.G82D|GLI2_uc002tmp.1_Missense_Mutation_p.G82D|GLI2_uc010fln.1_RNA|GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Intron|GLI2_uc002tmu.3_Intron|GLI2_uc002tmv.1_Missense_Mutation_p.G82D|GLI2_uc010flo.1_Intron|GLI2_uc002tmw.1_Missense_Mutation_p.G82D	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	82					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				TCTGTCCACGGTGTGCACGGG	0.622													17	106					0	0	1	0	0
GLI2	2736	broad.mit.edu	37	2	121732522	121732522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:121732522C>T	uc010flp.2	+	8	1235	c.1205C>T	c.(1204-1206)TCA>TTA	p.S402L	GLI2_uc002tmq.1_Missense_Mutation_p.S74L|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Missense_Mutation_p.S74L|GLI2_uc002tmu.3_Intron|GLI2_uc010flo.1_Intron|GLI2_uc002tmw.1_Intron	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	402					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				GGACACGGCTCATGTGGGTGT	0.443													16	66					0	0	1	0	0
TFCP2L1	29842	broad.mit.edu	37	2	122038838	122038838	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:122038838G>A	uc002tmx.2	-	2	165	c.72C>T	c.(70-72)CTC>CTT	p.L24L	TFCP2L1_uc010flr.2_Silent_p.L24L	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	24	Mediate transcriptional repression.				female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					TGGGCAGAGCGAGCACATCAC	0.637													19	97					0	0	1	0	0
CLASP1	23332	broad.mit.edu	37	2	122176207	122176207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:122176207G>A	uc002tnc.2	-	23	2701	c.2311C>T	c.(2311-2313)CCT>TCT	p.P771S	CLASP1_uc002tmz.2_5'UTR|CLASP1_uc002tna.2_Intron|CLASP1_uc010yyw.1_Intron|CLASP1_uc002tnb.2_Intron|CLASP1_uc010yyx.1_Intron|CLASP1_uc010yyy.1_Intron|CLASP1_uc010yyz.1_Intron|CLASP1_uc010yza.1_Intron|CLASP1_uc010yzb.1_Intron|CLASP1_uc010yzc.1_Intron|CLASP1_uc002tng.1_Intron	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	771	Interaction with microtubules, MAPRE1 and MAPRE3.				axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					CCAAGTGGAGGAAAGCCCCGA	0.597													9	62					0	0	1	0	0
CLASP1	23332	broad.mit.edu	37	2	122206628	122206628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:122206628G>A	uc002tnc.2	-	17	1982	c.1592C>T	c.(1591-1593)TCC>TTC	p.S531F	CLASP1_uc002tna.2_5'UTR|CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.S531F|CLASP1_uc010yza.1_Missense_Mutation_p.S531F|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tng.1_Missense_Mutation_p.S531F	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	531	Ser-rich.				axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					TTTCTGGTAGGAGGACTCCAA	0.493													4	23					0	0	1	0	0
CYP27C1	339761	broad.mit.edu	37	2	127961123	127961123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:127961123C>T	uc002tod.2	-	2	134	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001001665	NP_001001665	Q4G0S4	C27C1_HUMAN	cytochrome P450, family 27, subfamily C,	1						membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.071)		ATACGCTTCTCATCTTGAGCC	0.383													16	74					0	0	1	0	0
ERCC3	2071	broad.mit.edu	37	2	128028988	128028988	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:128028988G>A	uc002toh.1	-	12	1964	c.1869C>T	c.(1867-1869)CTC>CTT	p.L623L	ERCC3_uc002toe.1_Silent_p.L378L|ERCC3_uc002tof.1_Silent_p.L559L|ERCC3_uc002tog.1_Silent_p.L559L	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	623	Helicase C-terminal.				cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		AGATCTGAATGAGGACATTTG	0.453			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				17	135					0	0	1	0	0
WDR33	55339	broad.mit.edu	37	2	128520663	128520663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:128520663G>A	uc002tpg.1	-	7	880	c.697C>T	c.(697-699)CGT>TGT	p.R233C	WDR33_uc002tph.1_Missense_Mutation_p.R233C	NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	233	WD 3.				postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		TCATGGCAACGAAGAAAGTCC	0.403													5	41					0	0	1	0	0
SAP130	79595	broad.mit.edu	37	2	128753985	128753985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:128753985G>A	uc002tpp.2	-	11	1504	c.1372C>T	c.(1372-1374)CCC>TCC	p.P458S	SAP130_uc002tpn.2_Missense_Mutation_p.P219S|SAP130_uc002tpo.2_Missense_Mutation_p.P203S|SAP130_uc010fmd.2_Missense_Mutation_p.P458S|SAP130_uc002tpq.1_Missense_Mutation_p.P431S	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	458					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		CCGGAGATGGGAATCAGGCTA	0.562													8	45					0	0	1	0	0
UGGT1	56886	broad.mit.edu	37	2	128865525	128865525	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:128865525C>T	uc002tps.2	+	4	469	c.291C>T	c.(289-291)TCC>TCT	p.S97S	UGGT1_uc010fme.1_Intron|UGGT1_uc002tpr.2_Silent_p.S73S	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	97					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						CCGATTATTCCTACTATCATG	0.378													5	73					0	0	1	0	0
SMPD4	55627	broad.mit.edu	37	2	130910937	130910937	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:130910937G>A	uc002tqq.1	-	18	2617	c.2097C>T	c.(2095-2097)ATC>ATT	p.I699I	SMPD4_uc002tqo.1_Silent_p.I231I|SMPD4_uc002tqp.1_Silent_p.I438I|SMPD4_uc010yzy.1_Silent_p.I448I|SMPD4_uc010yzz.1_Silent_p.I363I|SMPD4_uc002tqr.1_Silent_p.I670I|SMPD4_uc002tqs.1_Silent_p.I567I|SMPD4_uc002tqt.1_Silent_p.I548I|SMPD4_uc010zaa.1_Silent_p.I557I|SMPD4_uc010zab.1_Silent_p.I597I|SMPD4_uc010zac.1_Silent_p.I440I|SMPD4_uc010zad.1_Silent_p.I335I	NM_017951	NP_060421	Q9NXE4	NSMA3_HUMAN	sphingomyelin phosphodiesterase 4 isoform 2	660					sphingomyelin catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|trans-Golgi network	metal ion binding|protein binding|sphingomyelin phosphodiesterase activity|sphingomyelin phosphodiesterase D activity				0	Colorectal(110;0.1)				Phosphatidylserine(DB00144)	CCTCACCCACGATGCAGTCGG	0.627													12	40					0	0	1	0	0
TUBA3E	112714	broad.mit.edu	37	2	130951713	130951713	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:130951713G>A	uc002tqv.2	-	4	803	c.702C>T	c.(700-702)ATC>ATT	p.I234I		NM_207312	NP_997195	Q6PEY2	TBA3E_HUMAN	tubulin, alpha 3e	234					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1	Colorectal(110;0.1)					TGGAGGACACGATCTGCCCAA	0.557													9	102					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131520713	131520713	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:131520713G>A	uc002trw.2	+	2	1258	c.1068G>A	c.(1066-1068)AGG>AGA	p.R356R	FAM123C_uc010fmv.2_Silent_p.R356R|FAM123C_uc010fms.1_Silent_p.R356R|FAM123C_uc010fmt.1_Silent_p.R356R|FAM123C_uc010fmu.1_Silent_p.R356R	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	356										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GCCCCTGCAGGGACCCTCGCA	0.657													6	42					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131520826	131520826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:131520826G>A	uc002trw.2	+	2	1371	c.1181G>A	c.(1180-1182)GGA>GAA	p.G394E	FAM123C_uc010fmv.2_Missense_Mutation_p.G394E|FAM123C_uc010fms.1_Missense_Mutation_p.G394E|FAM123C_uc010fmt.1_Missense_Mutation_p.G394E|FAM123C_uc010fmu.1_Missense_Mutation_p.G394E	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	394										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		TTCTCGCCAGGACTTGAGGAG	0.612													4	55					0	0	1	0	0
FAM168B	130074	broad.mit.edu	37	2	131812888	131812888	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:131812888G>A	uc002tsd.2	-	5	661	c.432C>T	c.(430-432)GTC>GTT	p.V144V		NM_001009993	NP_001009993	A1KXE4	F168B_HUMAN	hypothetical protein LOC130074	144											0						TGCCCATGGTGACCCCGTTGC	0.632													8	128					0	0	1	0	0
POTEE	445582	broad.mit.edu	37	2	132021797	132021797	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:132021797C>T	uc002tsn.2	+	15	2821	c.2769C>T	c.(2767-2769)TTC>TTT	p.F923F	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Silent_p.F523F|POTEE_uc002tsl.2_Silent_p.F505F|POTEE_uc010fmy.1_Silent_p.F387F	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	923	Actin-like.						ATP binding				0						CCCTGGACTTCGAGCAGGAGA	0.597													16	179					0	0	1	0	0
POTEE	445582	broad.mit.edu	37	2	132021832	132021832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:132021832C>T	uc002tsn.2	+	15	2856	c.2804C>T	c.(2803-2805)TCC>TTC	p.S935F	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.S535F|POTEE_uc002tsl.2_Missense_Mutation_p.S517F|POTEE_uc010fmy.1_Missense_Mutation_p.S399F	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	935	Actin-like.						ATP binding				0						TCCAGCTCCTCCCTAGAGAAG	0.627													20	171					0	0	1	0	0
LOC401010	401010	broad.mit.edu	37	2	132201893	132201893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:132201893C>T	uc002tst.2	-	1	575	c.109G>A	c.(109-111)GAA>AAA	p.E37K		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						TCAGCACTTTCCTGGTCCCCT	0.537													4	20					0	0	1	0	0
CCDC74A	90557	broad.mit.edu	37	2	132288234	132288234	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:132288234G>A	uc002tta.2	+	3	430	c.378G>A	c.(376-378)GAG>GAA	p.E126E	CCDC74A_uc002ttb.2_Intron	NM_138770	NP_620125	Q96AQ1	CC74A_HUMAN	coiled-coil domain containing 74A	126										skin(1)	1						TGTGGGTAGAGCCGGGAGGAC	0.667													9	48					0	0	1	0	0
CCDC74A	90557	broad.mit.edu	37	2	132290607	132290607	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:132290607C>T	uc002tta.2	+	7	1024	c.972C>T	c.(970-972)TTC>TTT	p.F324F	CCDC74A_uc002ttb.2_Silent_p.F258F	NM_138770	NP_620125	Q96AQ1	CC74A_HUMAN	coiled-coil domain containing 74A	324										skin(1)	1						CCACGCATTTCCCCAAGGTCT	0.632													5	86					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	133066857	133066857	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:133066857C>T	uc002ttk.1	+	2		c.56C>T								Homo sapiens cDNA FLJ37280 fis, clone BRAMY2012881.																		TTCCAGAATCCTGCCCTTTCC	0.368													4	77					0	0	1	0	0
GPR39	2863	broad.mit.edu	37	2	133402786	133402786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:133402786G>A	uc002ttl.2	+	2	1438	c.969G>A	c.(967-969)ATG>ATA	p.M323I	LYPD1_uc002ttm.3_3'UTR|LYPD1_uc002ttn.2_3'UTR|LYPD1_uc002tto.2_3'UTR	NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	323	Helical; Name=7; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						GGGCGTACATGATCCTCCTCC	0.587													6	53					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133486454	133486454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:133486454C>T	uc002ttp.2	-	18	5889	c.5515G>A	c.(5515-5517)GAA>AAA	p.E1839K	NCKAP5_uc002ttq.2_Missense_Mutation_p.E520K	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1839							protein binding				0						ATTGGGTCTTCAGCATATCCG	0.547													9	114					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133531428	133531428	+	Missense_Mutation	SNP	C	T	T	rs150198489	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:133531428C>T	uc002ttp.2	-	16	5463	c.5089G>A	c.(5089-5091)GAT>AAT	p.D1697N	NCKAP5_uc002ttq.2_Missense_Mutation_p.D378N	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1697							protein binding				0						GCAACTGCATCGTCTTCATCC	0.333													11	78					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133541904	133541904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:133541904G>A	uc002ttp.2	-	14	2854	c.2480C>T	c.(2479-2481)TCA>TTA	p.S827L	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	827							protein binding				0						CAGGCCAGATGAAGGGAGTAG	0.468													9	168					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133542183	133542183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:133542183C>T	uc002ttp.2	-	14	2575	c.2201G>A	c.(2200-2202)AGG>AAG	p.R734K	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	734							protein binding				0						CTCTTCAGACCTTTTAAAGAA	0.428													7	41					0	0	1	0	0
ACMSD	130013	broad.mit.edu	37	2	135621048	135621048	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:135621048C>T	uc002ttz.2	+	5	400	c.333C>T	c.(331-333)TTC>TTT	p.F111F	ACMSD_uc002tua.2_Silent_p.F53F	NM_138326	NP_612199	Q8TDX5	ACMSD_HUMAN	aminocarboxymuconate semialdehyde decarboxylase	111					quinolinate metabolic process|tryptophan catabolic process	cytosol	aminocarboxymuconate-semialdehyde decarboxylase activity|metal ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.115)		CCAGGAGGTTCGTGGGTCTGG	0.577													5	68					0	0	1	0	0
CCNT2	905	broad.mit.edu	37	2	135712019	135712019	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:135712019C>T	uc002tuc.1	+	9	2026	c.1994C>T	c.(1993-1995)CCC>CTC	p.P665L	CCNT2_uc002tub.1_Intron|CCNT2_uc010zbf.1_Intron|CCNT2_uc002tud.1_Missense_Mutation_p.P328L	NM_058241	NP_490595	O60583	CCNT2_HUMAN	cyclin T2 isoform b	665	Poly-Pro.				cell cycle|cell division|interspecies interaction between organisms|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein kinase binding			ovary(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.107)		TTTAACCATCCCTTACCCCCT	0.478													6	49					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135745685	135745685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:135745685G>A	uc002tue.1	-	7	788	c.757C>T	c.(757-759)CGT>TGT	p.R253C	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.R140C|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_5'UTR|YSK4_uc002tui.3_Missense_Mutation_p.R270C	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	253							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		TCAGATTGACGAACAGACACT	0.458													5	73					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136566156	136566156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:136566156C>T	uc002tuu.1	-	8	3772	c.3761G>A	c.(3760-3762)CGA>CAA	p.R1254Q		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1254	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		CAGCAGCCTTCGCGTCCCCCA	0.567													12	64					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136575245	136575245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:136575245G>A	uc002tuu.1	-	6	1384	c.1373C>T	c.(1372-1374)TCC>TTC	p.S458F		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	458	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GAAGATCCGGGACCAGGAGAT	0.627													7	69					0	0	1	0	0
CXCR4	7852	broad.mit.edu	37	2	136872832	136872832	+	Silent	SNP	G	A	A	rs144569657		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:136872832G>A	uc002tuz.2	-	2	761	c.666C>T	c.(664-666)ATC>ATT	p.I222I	CXCR4_uc002tuy.2_Silent_p.I226I|CXCR4_uc010fnk.2_Silent_p.I207I	NM_003467	NP_003458	P61073	CXCR4_HUMAN	chemokine (C-X-C motif) receptor 4 isoform b	222	Cytoplasmic.				activation of MAPK activity|apoptosis|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|inflammatory response|initiation of viral infection|regulation of chemotaxis|response to hypoxia|response to virus	cell leading edge|cell surface|cytoplasmic membrane-bounded vesicle|integral to membrane|plasma membrane	actin binding|C-X-C chemokine receptor activity|coreceptor activity|myosin light chain binding|ubiquitin binding|ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.155)	Framycetin(DB00452)	GCTTGGAGATGATAATGCAAT	0.517													5	74					0	0	1	0	0
CXCR4	7852	broad.mit.edu	37	2	136872835	136872835	+	Silent	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:136872835A>T	uc002tuz.2	-	2	758	c.663T>A	c.(661-663)ATT>ATA	p.I221I	CXCR4_uc002tuy.2_Silent_p.I225I|CXCR4_uc010fnk.2_Silent_p.I206I	NM_003467	NP_003458	P61073	CXCR4_HUMAN	chemokine (C-X-C motif) receptor 4 isoform b	221	Cytoplasmic.				activation of MAPK activity|apoptosis|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|inflammatory response|initiation of viral infection|regulation of chemotaxis|response to hypoxia|response to virus	cell leading edge|cell surface|cytoplasmic membrane-bounded vesicle|integral to membrane|plasma membrane	actin binding|C-X-C chemokine receptor activity|coreceptor activity|myosin light chain binding|ubiquitin binding|ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.155)	Framycetin(DB00452)	TGGAGATGATAATGCAATAGC	0.522													5	74					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137814058	137814058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:137814058C>T	uc002tva.1	+	2	115	c.115C>T	c.(115-117)CAT>TAT	p.H39Y	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_5'UTR	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GTGGTGTTTTCATGTTGACGG	0.512													7	26					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137814328	137814328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:137814328G>A	uc002tva.1	+	2	385	c.385G>A	c.(385-387)GAA>AAA	p.E129K	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_Missense_Mutation_p.E19K	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TGAAATATGCGAACACTTTGC	0.517													15	69					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138208483	138208483	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:138208483G>A	uc002tva.1	+	14	2935	c.2935G>A	c.(2935-2937)GGG>AGG	p.G979R	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GTCTAGTTGGGGGTCTTGCAG	0.403													4	18					0	0	1	0	0
NXPH2	11249	broad.mit.edu	37	2	139428830	139428830	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:139428830G>A	uc002tvi.2	-	2	457	c.457C>T	c.(457-459)CTG>TTG	p.L153L		NM_007226	NP_009157	O95156	NXPH2_HUMAN	neurexophilin 2 precursor	153	III.				neuropeptide signaling pathway	extracellular region				ovary(3)|skin(1)	4				BRCA - Breast invasive adenocarcinoma(221;0.101)		ACATTGCCCAGGCCTGTTGAA	0.438													6	20					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141607771	141607771	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:141607771G>A	uc002tvj.1	-	29	5811	c.4839C>T	c.(4837-4839)TTC>TTT	p.F1613F	LRP1B_uc010fnl.1_Silent_p.F795F	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1613	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CAGATGCATCGAAGTCTATCA	0.373										TSP Lung(27;0.18)			6	24					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	142004878	142004878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:142004878C>T	uc002tvj.1	-	5	1481	c.509G>A	c.(508-510)AGA>AAA	p.R170K	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	170	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATGTGTGTTTCTGCAGGTCTG	0.403										TSP Lung(27;0.18)			4	9					0	0	1	0	0
KYNU	8942	broad.mit.edu	37	2	143790850	143790850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:143790850C>T	uc002tvl.2	+	12	1131	c.1001C>T	c.(1000-1002)CCT>CTT	p.P334L	KYNU_uc010fnm.2_Missense_Mutation_p.P334L	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	334					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	ATTTCAAATCCTCCCATTTTG	0.378													18	95					0	0	1	0	0
ZEB2	9839	broad.mit.edu	37	2	145147183	145147183	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:145147183G>A	uc002tvu.2	-	10	3960	c.3480C>T	c.(3478-3480)TTC>TTT	p.F1160F	ZEB2_uc002tvv.2_Silent_p.F1154F|ZEB2_uc010zbm.1_Silent_p.F1131F|ZEB2_uc010fnp.2_Intron	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	1160	Glu-rich (acidic).					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		CTTCCTCCTCGAACTCCTCGT	0.522													9	132					0	0	1	0	0
ZEB2	9839	broad.mit.edu	37	2	145156463	145156463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:145156463G>A	uc002tvu.2	-	8	2771	c.2291C>T	c.(2290-2292)TCC>TTC	p.S764F	ZEB2_uc002tvv.2_Missense_Mutation_p.S758F|ZEB2_uc010zbm.1_Missense_Mutation_p.S735F|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Missense_Mutation_p.S793F	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	764						cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		GGTAAAATGGGAAGGTTTTGT	0.403													11	83					0	0	1	0	0
MBD5	55777	broad.mit.edu	37	2	149240855	149240855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:149240855C>T	uc002twm.3	+	10	3683	c.2695C>T	c.(2695-2697)CAT>TAT	p.H899Y	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.H899Y|MBD5_uc002two.2_5'Flank|MBD5_uc002twp.2_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	899						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		GCACGCACTTCATTTTCCATC	0.498													6	49					0	0	1	0	0
MBD5	55777	broad.mit.edu	37	2	149246955	149246955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:149246955G>A	uc002twm.3	+	12	4043	c.3055G>A	c.(3055-3057)GTG>ATG	p.V1019M	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.V1019M|MBD5_uc002two.2_Missense_Mutation_p.V277M|MBD5_uc002twp.2_Missense_Mutation_p.V69M	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1019						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		TTTCTTCAAGGTGAGAATGCA	0.388													5	21					0	0	1	0	0
EPC2	26122	broad.mit.edu	37	2	149528634	149528634	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:149528634C>T	uc010zbt.1	+	10	1425	c.1398C>T	c.(1396-1398)TCC>TCT	p.S466S		NM_015630	NP_056445	Q52LR7	EPC2_HUMAN	enhancer of polycomb homolog 2	466					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)|breast(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0516)		ACCGAATATCCACAGAACATG	0.378													3	23					0	0	1	0	0
TNFAIP6	7130	broad.mit.edu	37	2	152230082	152230082	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:152230082C>T	uc002txk.2	+	5	719	c.643C>T	c.(643-645)CCA>TCA	p.P215S		NM_007115	NP_009046	P98066	TSG6_HUMAN	tumor necrosis factor, alpha-induced protein 6	215	CUB.				cell adhesion|cell-cell signaling|inflammatory response|signal transduction		hyaluronic acid binding				0				BRCA - Breast invasive adenocarcinoma(221;0.131)		AGATGAGCTTCCAGATGACAT	0.338													5	67					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152432234	152432234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:152432234C>T	uc010fnx.2	-	79	12076	c.11885G>A	c.(11884-11886)AGA>AAA	p.R3962K	NEB_uc002txr.2_Missense_Mutation_p.R385K	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3962	Nebulin 108.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AGCATTTGCTCTAGCGAGATT	0.388													6	92					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152466492	152466492	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:152466492C>T	uc010fnx.2	-	77	11623	c.11432G>A	c.(11431-11433)TGG>TAG	p.W3811*		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3811					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTTGGTTTTCCACTTTTGGAA	0.418													4	24					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152484282	152484282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:152484282C>T	uc010fnx.2	-	65	9360	c.9169G>A	c.(9169-9171)GAC>AAC	p.D3057N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3057	Nebulin 83.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ATCTTGGGGTCATCTTCAATG	0.453													25	114					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152507129	152507129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:152507129C>T	uc010fnx.2	-	53	7377	c.7186G>A	c.(7186-7188)GAT>AAT	p.D2396N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2396	Nebulin 64.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGCACAACATCGTTCTGATCA	0.388													8	40					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152537302	152537302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:152537302G>A	uc010fnx.2	-	30	3175	c.2984C>T	c.(2983-2985)TCG>TTG	p.S995L		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	995	Nebulin 24.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ATCTTCAATCGAGGTAAACTT	0.348													5	75					0	0	1	0	0
CACNB4	785	broad.mit.edu	37	2	152739783	152739783	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:152739783G>A	uc002tya.2	-	3	317	c.249C>T	c.(247-249)ATC>ATT	p.I83I	CACNB4_uc002txy.2_Silent_p.I49I|CACNB4_uc002txz.2_Silent_p.I65I|CACNB4_uc010fnz.2_Silent_p.I83I|CACNB4_uc002tyb.2_Silent_p.I49I	NM_000726	NP_000717	O00305	CACB4_HUMAN	calcium channel, voltage-dependent, beta 4	83					axon guidance|membrane depolarization|synaptic transmission	cytosol|internal side of plasma membrane|plasma membrane|synapse|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.156)	Verapamil(DB00661)	TCTCAAGCTGGATAGCTGCTT	0.517													9	64					0	0	1	0	0
CYTIP	9595	broad.mit.edu	37	2	158272366	158272366	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:158272366C>T	uc002tzj.1	-	8	975	c.903G>A	c.(901-903)AGG>AGA	p.R301R	CYTIP_uc010zcl.1_Silent_p.R195R	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	301	Ser-rich.				regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						TGCTCCGGTTCCTCCTTGAAG	0.547													5	36					0	0	1	0	0
ACVR1C	130399	broad.mit.edu	37	2	158443912	158443912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:158443912G>A	uc002tzk.3	-	2	334	c.91C>T	c.(91-93)CTT>TTT	p.L31F	ACVR1C_uc002tzl.3_Missense_Mutation_p.L31F|ACVR1C_uc010fof.2_Missense_Mutation_p.L31F|ACVR1C_uc010foe.2_5'UTR	NM_145259	NP_660302	Q8NER5	ACV1C_HUMAN	activin A receptor, type IC isoform 1	31	Extracellular (Potential).				apoptosis|cell differentiation|regulation of apoptosis	activin receptor complex	activin receptor activity, type I|ATP binding|transforming growth factor beta receptor activity			lung(3)|ovary(2)|skin(2)	7						TCACACAAAAGACATACACAC	0.368													10	60					0	0	1	0	0
PKP4	8502	broad.mit.edu	37	2	159481683	159481683	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:159481683C>T	uc002tzv.2	+	7	1157	c.897C>T	c.(895-897)CCC>CCT	p.P299P	PKP4_uc002tzt.1_Silent_p.P151P|PKP4_uc002tzu.2_Silent_p.P299P|PKP4_uc002tzw.2_Silent_p.P299P|PKP4_uc002tzx.2_5'UTR|PKP4_uc002tzy.1_5'UTR|PKP4_uc002tzz.1_Silent_p.P297P|PKP4_uc002uaa.2_Silent_p.P151P	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	299					cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						CCTCCAATCCCAACGGACCAA	0.622										HNSCC(62;0.18)			4	16					0	0	1	0	0
TANC1	85461	broad.mit.edu	37	2	160074104	160074104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:160074104C>T	uc002uag.2	+	20	3615	c.3341C>T	c.(3340-3342)CCA>CTA	p.P1114L	TANC1_uc010zcm.1_Missense_Mutation_p.P1106L|TANC1_uc010fom.1_Missense_Mutation_p.P920L|TANC1_uc010fon.2_5'UTR	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1114	ANK 7.					cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						AGAGGGGTTCCACCTTTGTTT	0.597													13	88					0	0	1	0	0
LY75	4065	broad.mit.edu	37	2	160673464	160673464	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:160673464T>A	uc002ubc.3	-	30	4302	c.4233A>T	c.(4231-4233)AAA>AAT	p.K1411N	LY75_uc002ubb.3_Missense_Mutation_p.K1411N|LY75_uc010fos.2_Missense_Mutation_p.K1411N	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	1411	Extracellular (Potential).|C-type lectin 9.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		ATGTTACCTTTTTTTGAATAA	0.353													5	47					0	0	1	0	0
PLA2R1	22925	broad.mit.edu	37	2	160873150	160873150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:160873150G>A	uc002ube.1	-	9	1733	c.1526C>T	c.(1525-1527)TCT>TTT	p.S509F	PLA2R1_uc010zcp.1_Missense_Mutation_p.S509F|PLA2R1_uc002ubf.2_Missense_Mutation_p.S509F	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	509	Extracellular (Potential).				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						TTCAGCATCAGAGAGGACATG	0.373													9	65					0	0	1	0	0
PLA2R1	22925	broad.mit.edu	37	2	160884741	160884741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:160884741G>A	uc002ube.1	-	6	1294	c.1087C>T	c.(1087-1089)CAT>TAT	p.H363Y	PLA2R1_uc010zcp.1_Missense_Mutation_p.H363Y|PLA2R1_uc002ubf.2_Missense_Mutation_p.H363Y	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	363	Extracellular (Potential).				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						ACTATTTCATGATCAATGTGG	0.333													5	44					0	0	1	0	0
PLA2R1	22925	broad.mit.edu	37	2	160901537	160901537	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:160901537G>A	uc002ube.1	-	2	448	c.241C>T	c.(241-243)CTC>TTC	p.L81F	PLA2R1_uc010zcp.1_Missense_Mutation_p.L81F|PLA2R1_uc002ubf.2_Missense_Mutation_p.L81F	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	81	Extracellular (Potential).|Ricin B-type lectin.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						ATGTTAAAGAGGCCATGGTTT	0.483													5	46					0	0	1	0	0
ITGB6	3694	broad.mit.edu	37	2	160964243	160964243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:160964243G>A	uc002ubh.2	-	14	2231	c.2215C>T	c.(2215-2217)CGT>TGT	p.R739C	ITGB6_uc010fou.2_Missense_Mutation_p.R739C|ITGB6_uc010zcq.1_Missense_Mutation_p.R697C|ITGB6_uc010fov.1_Missense_Mutation_p.R739C	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	739	Cytoplasmic (Potential).|Interaction with HAX1.				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						ACTTCTTTACGATCATGAAAT	0.458													4	33					0	0	1	0	0
TBR1	10716	broad.mit.edu	37	2	162273212	162273212	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:162273212C>T	uc002ubw.1	+	1	593	c.291C>T	c.(289-291)TTC>TTT	p.F97F	TBR1_uc010foy.2_5'Flank	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	97						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						GTCACAGTTTCGATGGCTCTG	0.577													14	162					0	0	1	0	0
TBR1	10716	broad.mit.edu	37	2	162273265	162273265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:162273265C>T	uc002ubw.1	+	1	646	c.344C>T	c.(343-345)TCT>TTT	p.S115F	TBR1_uc010foy.2_5'Flank	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	115						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						CAGCCACAGTCTGCGGCCACT	0.637													18	174					0	0	1	0	0
TBR1	10716	broad.mit.edu	37	2	162279982	162279982	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:162279982C>T	uc002ubw.1	+	6	1595	c.1293C>T	c.(1291-1293)TTC>TTT	p.F431F	TBR1_uc010foy.2_Silent_p.F144F	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	431						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						CCGGCTCTTTCCTGCAGGACC	0.577													8	23					0	0	1	0	0
SLC4A10	57282	broad.mit.edu	37	2	162711484	162711484	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:162711484T>G	uc002ubx.3	+	5	605	c.421T>G	c.(421-423)TTG>GTG	p.L141V	SLC4A10_uc010fpa.1_Missense_Mutation_p.L153V|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Missense_Mutation_p.L141V|SLC4A10_uc010zcs.1_Missense_Mutation_p.L152V	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	141	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						GTATAGGTGGTTGAAGTTTGA	0.328													4	11					0	0	1	0	0
FIGN	55137	broad.mit.edu	37	2	164466911	164466911	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:164466911G>A	uc002uck.1	-	3	1742	c.1431C>T	c.(1429-1431)ATC>ATT	p.I477I		NM_018086	NP_060556	Q5HY92	FIGN_HUMAN	fidgetin	477						nuclear matrix	ATP binding|nucleoside-triphosphatase activity			large_intestine(2)|ovary(1)|skin(1)	4						GTCCTTGGGTGATAATCTCAT	0.522													6	35					0	0	1	0	0
COBLL1	22837	broad.mit.edu	37	2	165560956	165560956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:165560956G>A	uc010zcw.1	-	11	1545	c.1421C>T	c.(1420-1422)CCA>CTA	p.P474L	COBLL1_uc002ucp.2_Missense_Mutation_p.P408L|COBLL1_uc002ucq.2_Missense_Mutation_p.P408L|COBLL1_uc010zcx.1_Missense_Mutation_p.P454L|COBLL1_uc002ucs.1_RNA|COBLL1_uc002uco.2_Missense_Mutation_p.P177L	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	446										ovary(2)|pancreas(1)	3						TGTCATACCTGGGCTGGATAG	0.423													11	57					0	0	1	0	0
COBLL1	22837	broad.mit.edu	37	2	165561600	165561600	+	Missense_Mutation	SNP	C	T	T	rs138185294		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:165561600C>T	uc010zcw.1	-	10	1334	c.1210G>A	c.(1210-1212)GGA>AGA	p.G404R	COBLL1_uc002ucp.2_Missense_Mutation_p.G338R|COBLL1_uc002ucq.2_Missense_Mutation_p.G338R|COBLL1_uc010zcx.1_Missense_Mutation_p.G384R|COBLL1_uc002ucs.1_RNA|COBLL1_uc002uco.2_Missense_Mutation_p.G107R	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	376										ovary(2)|pancreas(1)	3						CTCACTCTTCCTGCTTCACAG	0.443													4	34					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166172057	166172057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:166172057C>T	uc002udc.2	+	11	1750	c.1460C>T	c.(1459-1461)TCT>TTT	p.S487F	SCN2A_uc002udd.2_Missense_Mutation_p.S487F|SCN2A_uc002ude.2_Missense_Mutation_p.S487F	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	487					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TCAGAGAGTTCTTCAGTAGCA	0.348													3	31					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166179688	166179688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:166179688C>T	uc002udc.2	+	12	1984	c.1694C>T	c.(1693-1695)TCC>TTC	p.S565F	SCN2A_uc002udd.2_Missense_Mutation_p.S565F|SCN2A_uc002ude.2_Missense_Mutation_p.S565F	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	565					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ATCCGTGGCTCCCTTTTCTCT	0.438													7	52					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166187934	166187934	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:166187934G>A	uc002udc.2	+	14	2534	c.2244G>A	c.(2242-2244)GTG>GTA	p.V748V	SCN2A_uc002udd.2_Silent_p.V748V|SCN2A_uc002ude.2_Silent_p.V748V	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	748	II.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GGTTAAAGGTGAAACACCTTG	0.413													7	39					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166201356	166201356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:166201356G>A	uc002udc.2	+	16	3144	c.2854G>A	c.(2854-2856)GAG>AAG	p.E952K	SCN2A_uc002udd.2_Missense_Mutation_p.E952K|SCN2A_uc002ude.2_Missense_Mutation_p.E952K	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	952	II.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GGACTGTATGGAGGTCGCTGG	0.468													12	67					0	0	1	0	0
CSRNP3	80034	broad.mit.edu	37	2	166535517	166535517	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:166535517T>C	uc002udf.2	+	7	1388	c.1012T>C	c.(1012-1014)TGC>CGC	p.C338R	CSRNP3_uc002udg.2_Missense_Mutation_p.C338R	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	338	Glu-rich.				apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						AGAATTAGATTGCCAAGGAGA	0.512													3	25					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167133742	167133742	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:167133742G>A	uc010fpl.2	-	16	2933	c.2592C>T	c.(2590-2592)ATC>ATT	p.I864I	uc002udp.2_RNA	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	875	II.|Helical; Name=S5 of repeat II; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TGAAGACGATGATGGCCAACA	0.463													4	35					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168100147	168100147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:168100147G>A	uc002udx.2	+	8	2263	c.2245G>A	c.(2245-2247)GGC>AGC	p.G749S	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.G574S|XIRP2_uc010fpq.2_Missense_Mutation_p.G527S|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	574					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AGATGGTTCGGGCCAAATGCT	0.383													3	22					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168104099	168104099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:168104099C>T	uc002udx.2	+	8	6215	c.6197C>T	c.(6196-6198)ACT>ATT	p.T2066I	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.T1891I|XIRP2_uc010fpq.2_Missense_Mutation_p.T1844I|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1891					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GGTGTCTGGACTGATACTACA	0.358													4	10					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168105143	168105143	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:168105143G>A	uc002udx.2	+	8	7259	c.7241G>A	c.(7240-7242)GGA>GAA	p.G2414E	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.G2239E|XIRP2_uc010fpq.2_Missense_Mutation_p.G2192E|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2239					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATCATAACAGGAAAAACCGGT	0.438													4	20					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168107683	168107683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:168107683G>A	uc002udx.2	+	8	9799	c.9781G>A	c.(9781-9783)GAA>AAA	p.E3261K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E3086K|XIRP2_uc010fpq.2_Missense_Mutation_p.E3039K|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3086					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CGCTCAAGAGGAAATCAGGAA	0.423													3	8					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169780258	169780258	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:169780258G>A	uc002ueo.1	-	28	3966	c.3840C>T	c.(3838-3840)ATC>ATT	p.I1280I	ABCB11_uc010zda.1_Silent_p.I698I|ABCB11_uc010zdb.1_Silent_p.I756I	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1280	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CCGCGTTCTGGATGGTGGACA	0.507													5	49					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169791884	169791884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:169791884C>T	uc002ueo.1	-	23	2992	c.2866G>A	c.(2866-2868)GAG>AAG	p.E956K	ABCB11_uc010zda.1_Missense_Mutation_p.E398K|ABCB11_uc010zdb.1_Missense_Mutation_p.E432K	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	956	Cytoplasmic (Potential).|ABC transmembrane type-1 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	AACCGCCTCTCCTTTCCAATT	0.443													18	63					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169792924	169792924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:169792924C>T	uc002ueo.1	-	22	2756	c.2630G>A	c.(2629-2631)GGG>GAG	p.G877E	ABCB11_uc010zda.1_Missense_Mutation_p.G319E|ABCB11_uc010zdb.1_Missense_Mutation_p.G353E	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	877	Helical; (Potential).|ABC transmembrane type-1 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	GACTATCATCCCGATCTGAGA	0.478													3	25					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	169995790	169995790	+	Silent	SNP	G	A	A	rs147764981	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:169995790G>A	uc002ues.2	-	74	13572	c.13359C>T	c.(13357-13359)TCC>TCT	p.S4453S		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4453	SH3-binding (Potential).|Cytoplasmic (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CAGGCAAAAGGGAGCCGGTCC	0.468													3	34					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170068592	170068592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:170068592G>A	uc002ues.2	-	37	6379	c.6166C>T	c.(6166-6168)CGG>TGG	p.R2056W		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2056	Extracellular (Potential).|EGF-like 8.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GAGCAGGACCGATTATCAGGA	0.448													5	29					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170097788	170097788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:170097788C>T	uc002ues.2	-	25	3968	c.3755G>A	c.(3754-3756)GGG>GAG	p.G1252E	LRP2_uc010zdf.1_Missense_Mutation_p.G1115E	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1252	Extracellular (Potential).|LDL-receptor class A 13.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GTCTGGATGCCCATCACATTC	0.493													5	67					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170145543	170145543	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:170145543G>A	uc002ues.2	-	9	1248	c.1035C>T	c.(1033-1035)ACC>ACT	p.T345T	LRP2_uc010zdf.1_Silent_p.T345T	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	345	EGF-like 1.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TACCAACACAGGTACGGCTGT	0.527													7	36					0	0	1	0	0
KBTBD10	10324	broad.mit.edu	37	2	170356074	170356074	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:170356074C>T	uc010zdh.1	+	9	818	c.760C>T	c.(760-762)CAC>TAC	p.H254Y	BBS5_uc002uet.2_Missense_Mutation_p.H254Y|BBS5_uc010fpw.2_Missense_Mutation_p.H233Y	NM_152384	NP_689597	O60662	KBTBA_HUMAN	Bardet-Biedl syndrome 5	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					striated muscle contraction	centrosome|nucleolus|plasma membrane|pseudopodium|ruffle					0						CAATTCACTTCACAAAGTCTA	0.323													4	59					0	0	1	0	0
KBTBD10	10324	broad.mit.edu	37	2	170367264	170367264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:170367264C>T	uc002ueu.1	+	1	1053	c.976C>T	c.(976-978)CTT>TTT	p.L326F	KBTBD10_uc010zdh.1_Intron	NM_006063	NP_006054	O60662	KBTBA_HUMAN	kelch repeat and BTB (POZ) domain containing 10	326					striated muscle contraction	centrosome|nucleolus|plasma membrane|pseudopodium|ruffle					0						TGAATGCTACCTTACTGCACT	0.433													5	75					0	0	1	0	0
KLHL23	151230	broad.mit.edu	37	2	170591668	170591668	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:170591668C>A	uc002ufh.1	+	4	482	c.144C>A	c.(142-144)TTC>TTA	p.F48L	KLHL23_uc002ufi.1_Missense_Mutation_p.F48L	NM_144711	NP_653312	Q8NBE8	KLH23_HUMAN	kelch-like 23	48	BTB.										0						GCATAATTTTCCATTGTCACC	0.343													11	90					5.50884e-06	5.57603e-06	1	1	0
MYO3B	140469	broad.mit.edu	37	2	171240260	171240260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:171240260C>T	uc002ufy.2	+	12	1369	c.1226C>T	c.(1225-1227)CCC>CTC	p.P409L	MYO3B_uc002ufv.2_Missense_Mutation_p.P396L|MYO3B_uc010fqb.1_Missense_Mutation_p.P396L|MYO3B_uc002ufz.2_Missense_Mutation_p.P409L|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	409	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GCCTCCAATCCCCCCCACATA	0.463													4	15					0	0	1	0	0
MYO3B	140469	broad.mit.edu	37	2	171355153	171355153	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:171355153G>A	uc002ufy.2	+	26	3209	c.3066G>A	c.(3064-3066)GAG>GAA	p.E1022E	MYO3B_uc002ufv.2_Silent_p.E1009E|MYO3B_uc010fqb.1_Silent_p.E1009E|MYO3B_uc002ufz.2_Silent_p.E1022E|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_Intron	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	1022	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						CTAGCAAAGAGAGCTGTGTGG	0.383													7	58					0	0	1	0	0
GORASP2	26003	broad.mit.edu	37	2	171822505	171822505	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:171822505C>T	uc002ugk.2	+	10	1364	c.1224C>T	c.(1222-1224)TCC>TCT	p.S408S	GORASP2_uc002ugj.2_Silent_p.S340S|GORASP2_uc010zdl.1_Silent_p.S420S|GORASP2_uc010zdm.1_Silent_p.S364S|GORASP2_uc002ugl.2_Silent_p.S340S|GORASP2_uc002ugm.2_Silent_p.S190S	NM_015530	NP_056345	Q9H8Y8	GORS2_HUMAN	golgi reassembly stacking protein 2	408						Golgi membrane				breast(1)|central_nervous_system(1)	2						ACGCTGCCTCCTCACTCACTG	0.632													7	41					0	0	1	0	0
MAP1D	254042	broad.mit.edu	37	2	172926305	172926305	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:172926305C>T	uc002uhk.2	+	2	193	c.120C>T	c.(118-120)TTC>TTT	p.F40F	MAP1D_uc010zdw.1_5'UTR	NM_199227	NP_954697	Q6UB28	AMP1D_HUMAN	methionine aminopeptidase 1D precursor	40					N-terminal protein amino acid modification|peptidyl-methionine modification|proteolysis	mitochondrion	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)			GAAGAAATTTCTTTTTTCGGA	0.388													19	183					0	0	1	0	0
MAP1D	254042	broad.mit.edu	37	2	172926360	172926360	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:172926360T>A	uc002uhk.2	+	2	248	c.175T>A	c.(175-177)TCT>ACT	p.S59T	MAP1D_uc010zdw.1_5'UTR	NM_199227	NP_954697	Q6UB28	AMP1D_HUMAN	methionine aminopeptidase 1D precursor	59					N-terminal protein amino acid modification|peptidyl-methionine modification|proteolysis	mitochondrion	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)			GGCTGCAGTTTCTTCAGCTCA	0.383													12	210					0	0	1	0	0
DLX1	1745	broad.mit.edu	37	2	172952913	172952913	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:172952913C>T	uc002uhl.2	+	3	894	c.696C>T	c.(694-696)TCC>TCT	p.S232S	DLX1_uc002uhm.2_3'UTR	NM_178120	NP_835221	P56177	DLX1_HUMAN	distal-less homeobox 1 isoform 1	232						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)			ACGCGGGCTCCTATATCCCCA	0.617													6	108					0	0	1	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173879315	173879315	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:173879315G>A	uc002uhv.3	+	18	1969	c.1782G>A	c.(1780-1782)GAG>GAA	p.E594E	RAPGEF4_uc002uhw.3_Silent_p.E450E	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	594	N-terminal Ras-GEF.				blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			TCCTGCAAGAGGATGACGTGT	0.502													4	31					0	0	1	0	0
CDCA7	83879	broad.mit.edu	37	2	174228591	174228591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:174228591C>T	uc002uid.1	+	4	561	c.430C>T	c.(430-432)CGT>TGT	p.R144C	CDCA7_uc002uic.1_Missense_Mutation_p.R223C|CDCA7_uc010zej.1_Missense_Mutation_p.R179C|CDCA7_uc010zek.1_Missense_Mutation_p.R102C	NM_145810	NP_665809	Q9BWT1	CDCA7_HUMAN	cell division cycle associated 7 isoform 2	144					regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.116)			TGGCTCGTTCCGTGGAAGACA	0.418													8	173					0	0	1	0	0
CDCA7	83879	broad.mit.edu	37	2	174231977	174231977	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:174231977T>G	uc002uid.1	+	8	1179	c.1048T>G	c.(1048-1050)TAT>GAT	p.Y350D	CDCA7_uc002uic.1_Missense_Mutation_p.Y429D|CDCA7_uc010zej.1_Missense_Mutation_p.Y385D|CDCA7_uc010zek.1_Missense_Mutation_p.Y308D	NM_145810	NP_665809	Q9BWT1	CDCA7_HUMAN	cell division cycle associated 7 isoform 2	350	Mediates transcriptional activity.				regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.116)			TTTAGCCAAATATCATGGCTT	0.453													9	52					0	0	1	0	0
SP3	6670	broad.mit.edu	37	2	174820667	174820667	+	Silent	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:174820667A>G	uc002uig.2	-	4	737	c.573T>C	c.(571-573)TCT>TCC	p.S191S	SP3_uc002uie.2_Silent_p.S123S|SP3_uc002uif.2_Silent_p.S138S|SP3_uc010zel.1_Silent_p.S188S	NM_003111	NP_003102	Q02447	SP3_HUMAN	Sp3 transcription factor isoform 1	191	Transactivation domain (Gln-rich).				negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	protein binding|zinc ion binding		EWSR1/SP3(3)	soft_tissue(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.185)			CATTATCTGAAGAGCCTGTGA	0.423													29	137					0	0	1	0	0
TTC30B	150737	broad.mit.edu	37	2	178415796	178415796	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:178415796G>A	uc002uln.2	-	1	1729	c.1696C>T	c.(1696-1698)CGA>TGA	p.R566*	TTC30B_uc010zfc.1_Nonsense_Mutation_p.R338*	NM_152517	NP_689730	Q8N4P2	TT30B_HUMAN	tetratricopeptide repeat domain 30B	566	TPR 8.				cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00151)|Epithelial(96;0.00931)|all cancers(119;0.0362)			TTGATAACTCGAGAAATACCA	0.368													12	105					0	0	1	0	0
TTC30A	92104	broad.mit.edu	37	2	178482475	178482475	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:178482475G>A	uc002ulo.2	-	1	1220	c.955C>T	c.(955-957)CCT>TCT	p.P319S		NM_152275	NP_689488	Q86WT1	TT30A_HUMAN	tetratricopeptide repeat domain 30A	319					cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000423)|Epithelial(96;0.00373)|all cancers(119;0.0169)			GTCTCTGGAGGAAAGGGATTC	0.468													21	145					0	0	1	0	0
TTC30A	92104	broad.mit.edu	37	2	178482772	178482772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:178482772G>A	uc002ulo.2	-	1	923	c.658C>T	c.(658-660)CGC>TGC	p.R220C		NM_152275	NP_689488	Q86WT1	TT30A_HUMAN	tetratricopeptide repeat domain 30A	220	TPR 4.				cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000423)|Epithelial(96;0.00373)|all cancers(119;0.0169)			GGATGCTGGCGGATGCCACGC	0.542													4	44					0	0	1	0	0
OSBPL6	114880	broad.mit.edu	37	2	179170945	179170945	+	Missense_Mutation	SNP	C	T	T	rs77535912		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:179170945C>T	uc002ulx.2	+	3	412	c.34C>T	c.(34-36)CAT>TAT	p.H12Y	OSBPL6_uc002ulw.2_Missense_Mutation_p.H12Y|OSBPL6_uc002uly.2_Missense_Mutation_p.H12Y|OSBPL6_uc010zfe.1_Missense_Mutation_p.H12Y|OSBPL6_uc002ulz.2_Missense_Mutation_p.H12Y	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	12					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			TTCCCCTGCTCATAAAACATC	0.453													5	45					0	0	1	0	0
DFNB59	494513	broad.mit.edu	37	2	179325827	179325827	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:179325827C>T	uc002umi.3	+	7	1241	c.885C>T	c.(883-885)ATC>ATT	p.I295I	DFNB59_uc002umj.3_Silent_p.I295I	NM_001042702	NP_001036167	Q0ZLH3	PJVK_HUMAN	deafness, autosomal recessive 59	295					sensory perception of sound						0			OV - Ovarian serous cystadenocarcinoma(117;0.00406)|Epithelial(96;0.0159)|all cancers(119;0.0564)			GGACCCATATCCGAGTTAACT	0.408													6	108					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179542435	179542435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:179542435C>T	uc010zfg.1	-	143	30696	c.30472G>A	c.(30472-30474)GAA>AAA	p.E10158K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6819K|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11085							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACATATTCTTCTTCGGGAGGA	0.453													4	21					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179568878	179568878	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:179568878G>A	uc010zfg.1	-	103	26711	c.26487C>T	c.(26485-26487)ATC>ATT	p.I8829I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.I5490I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9756							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACGCACCTTCGATTCTGAGTT	0.468													13	99					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179568945	179568945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:179568945C>T	uc010zfg.1	-	103	26644	c.26420G>A	c.(26419-26421)CGA>CAA	p.R8807Q	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R5468Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9734							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCTTCTGCTCGAACATCTGC	0.428													15	73					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179634510	179634510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:179634510C>T	uc010zfg.1	-	37	9022	c.8798G>A	c.(8797-8799)GGA>GAA	p.G2933E	TTN_uc010zfh.1_Missense_Mutation_p.G2887E|TTN_uc010zfi.1_Missense_Mutation_p.G2887E|TTN_uc010zfj.1_Missense_Mutation_p.G2887E|TTN_uc002unb.2_Missense_Mutation_p.G2933E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2933							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGGAGTTTTCCCTGCACAAC	0.468													12	58					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179642625	179642625	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:179642625G>A	uc010zfg.1	-	25	4510	c.4286C>T	c.(4285-4287)CCT>CTT	p.P1429L	TTN_uc010zfh.1_Missense_Mutation_p.P1383L|TTN_uc010zfi.1_Missense_Mutation_p.P1383L|TTN_uc010zfj.1_Missense_Mutation_p.P1383L|TTN_uc002unb.2_Missense_Mutation_p.P1429L|uc002unc.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1429							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATCCGTGCAGGAGACATCCT	0.483													3	12					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179664453	179664453	+	Silent	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:179664453A>G	uc002und.2	-	6	900	c.675T>C	c.(673-675)ATT>ATC	p.I225I	TTN_uc010zfg.1_Silent_p.I225I|TTN_uc010zfh.1_Silent_p.I225I|TTN_uc010zfi.1_Silent_p.I225I|TTN_uc010zfj.1_Silent_p.I225I|TTN_uc002unb.2_Silent_p.I225I			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	225							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTGGGCTTCAATCTTCTGTA	0.458													9	42					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179665314	179665315	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:179665314_179665315GG>AA	uc002und.2	-	4	615_616	c.390_391CC>TT	c.(388-393)ATCCCT>ATTTCT	p.P131S	TTN_uc010zfg.1_Missense_Mutation_p.P131S|TTN_uc010zfh.1_Missense_Mutation_p.P131S|TTN_uc010zfi.1_Missense_Mutation_p.P131S|TTN_uc010zfj.1_Missense_Mutation_p.P131S|TTN_uc002unb.2_Missense_Mutation_p.P131S			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	131							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAGGTGTAGGGATTCCAGTCA	0.52													10	76					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179730620	179730620	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:179730620C>T	uc002unf.1	-	7	930	c.873G>A	c.(871-873)AAG>AAA	p.K291K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	291	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			GCTGTAGGTTCTTTGCAGAAA	0.478													11	72					0	0	1	0	0
CWC22	57703	broad.mit.edu	37	2	180818940	180818940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:180818940G>A	uc010frh.1	-	16	1981	c.1681C>T	c.(1681-1683)CCA>TCA	p.P561S	CWC22_uc002uno.2_Missense_Mutation_p.P83S|CWC22_uc002unp.2_Missense_Mutation_p.P561S	NM_020943	NP_065994	Q9HCG8	CWC22_HUMAN	CWC22 spliceosome-associated protein homolog	561	MI.					catalytic step 2 spliceosome	protein binding|RNA binding				0						ACACTCCATGGAAGTGAATCA	0.343													3	9					0	0	1	0	0
CERKL	375298	broad.mit.edu	37	2	182403981	182403981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:182403981G>A	uc002unx.2	-	13	1555	c.1454C>T	c.(1453-1455)CCA>CTA	p.P485L	CERKL_uc002uny.2_Missense_Mutation_p.P459L|CERKL_uc010zfm.1_Missense_Mutation_p.P441L|CERKL_uc002unz.2_Missense_Mutation_p.P207L|CERKL_uc002uoa.2_Missense_Mutation_p.P390L|CERKL_uc002uob.2_Missense_Mutation_p.P207L|CERKL_uc002uoc.2_Missense_Mutation_p.P346L|CERKL_uc010frk.2_RNA|CERKL_uc002unw.2_Missense_Mutation_p.P55L	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	485					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			CTCAACAAATGGAAAATTGAA	0.353													3	9					0	0	1	0	0
NEUROD1	4760	broad.mit.edu	37	2	182543313	182543313	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:182543313G>T	uc002uof.2	-	2	511	c.275C>A	c.(274-276)ACT>AAT	p.T92N	CERKL_uc002uod.1_Intron	NM_002500	NP_002491	Q13562	NDF1_HUMAN	neurogenic differentiation 1	92	Nuclear localization signal (Potential).				amacrine cell differentiation|cerebellum development|dentate gyrus development|embryonic organ morphogenesis|enteroendocrine cell differentiation|glucose homeostasis|inner ear development|insulin secretion|negative regulation of apoptosis|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of intestinal epithelial structure maintenance|response to glucose stimulus	cytoplasm|nucleus	chromatin binding|E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.088)			GCGAGCCTTAGTCATCTTCTT	0.418													62	367					9.65139e-37	9.80041e-37	1	1	0
NEUROD1	4760	broad.mit.edu	37	2	182543371	182543371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:182543371C>T	uc002uof.2	-	2	453	c.217G>A	c.(217-219)GAA>AAA	p.E73K	CERKL_uc002uod.1_Intron	NM_002500	NP_002491	Q13562	NDF1_HUMAN	neurogenic differentiation 1	73	Poly-Glu.|Glu-rich (acidic).				amacrine cell differentiation|cerebellum development|dentate gyrus development|embryonic organ morphogenesis|enteroendocrine cell differentiation|glucose homeostasis|inner ear development|insulin secretion|negative regulation of apoptosis|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of intestinal epithelial structure maintenance|response to glucose stimulus	cytoplasm|nucleus	chromatin binding|E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.088)			tcctcctcttcctcttcttcc	0.388													25	385					0	0	1	0	0
PDE1A	5136	broad.mit.edu	37	2	183387049	183387049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:183387049G>A	uc002uos.2	-	2	139	c.55C>T	c.(55-57)CTT>TTT	p.L19F	PDE1A_uc010zfp.1_5'UTR|PDE1A_uc002uoq.1_Missense_Mutation_p.L19F|PDE1A_uc010zfq.1_Missense_Mutation_p.L19F|PDE1A_uc002uov.1_RNA	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	19					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TCTCCTGTAAGATACTTAAAA	0.403													3	20					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800682	185800682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:185800682C>T	uc002uph.2	+	4	1153	c.559C>T	c.(559-561)CCA>TCA	p.P187S		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	187						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TGCTGAAGATCCAGAAAGTGC	0.363													6	10					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800783	185800783	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:185800783G>A	uc002uph.2	+	4	1254	c.660G>A	c.(658-660)AAG>AAA	p.K220K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	220						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CATTTCCAAAGAAAGCGTCCG	0.423													4	18					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802482	185802482	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:185802482C>T	uc002uph.2	+	4	2953	c.2359C>T	c.(2359-2361)CGA>TGA	p.R787*		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	787						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AAGTTTAAATCGACAGAATCA	0.368													5	16					0	0	1	0	0
ITGAV	3685	broad.mit.edu	37	2	187531446	187531446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:187531446C>T	uc002upq.2	+	22	2458	c.2182C>T	c.(2182-2184)CGT>TGT	p.R728C	ITGAV_uc010frs.2_Missense_Mutation_p.R692C|ITGAV_uc010zfv.1_Missense_Mutation_p.R682C	NM_002210	NP_002201	P06756	ITAV_HUMAN	integrin alpha-V isoform 1 precursor	728	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		AGCTGGTCTTCGTTTCAGTGT	0.323													7	40					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189855766	189855766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:189855766G>A	uc002uqj.1	+	11	952	c.835G>A	c.(835-837)GGT>AGT	p.G279S	COL3A1_uc010frw.1_5'Flank	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	279	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGGTGAAACAGGTGCTCCTGG	0.289													3	21					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189868765	189868765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:189868765C>T	uc002uqj.1	+	39	2836	c.2719C>T	c.(2719-2721)CCT>TCT	p.P907S		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	907	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GCCCCCAGGTCCTGCGGGTAA	0.547													5	20					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189870087	189870087	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:189870087G>A	uc002uqj.1	+	41	3060	c.2943G>A	c.(2941-2943)GGG>GGA	p.G981G		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	981	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding	p.G981G(1)		central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GTGAAAGTGGGAAACCAGGAG	0.428													6	58					0	0	1	0	0
SLC40A1	30061	broad.mit.edu	37	2	190428764	190428764	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:190428764G>A	uc002uqp.3	-	7	1299	c.948C>T	c.(946-948)TTC>TTT	p.F316F		NM_014585	NP_055400	Q9NP59	S40A1_HUMAN	solute carrier family 40 (iron-regulated	316	Helical; (Potential).				anatomical structure morphogenesis|cellular iron ion homeostasis	cytoplasm|integral to plasma membrane	iron ion transmembrane transporter activity|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000917)|Epithelial(96;0.014)|all cancers(119;0.0491)			TCATATAAAGGAAAGCAAGAC	0.532													4	25					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	190788092	190788092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:190788092C>T	uc002uro.2	+	1	174	c.31C>T	c.(31-33)CCT>TCT	p.P11S						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;																		CAAGACAGATCCTCGTTCCAT	0.438													5	37					0	0	1	0	0
STAT4	6775	broad.mit.edu	37	2	191903929	191903929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:191903929G>A	uc002usm.1	-	16	1684	c.1430C>T	c.(1429-1431)TCC>TTC	p.S477F	STAT4_uc002usn.1_Missense_Mutation_p.S477F|STAT4_uc010zgk.1_Missense_Mutation_p.S322F|STAT4_uc002uso.2_Missense_Mutation_p.S477F	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	477					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			GTCTACCTGGGAATCGTTGGT	0.428													9	50					0	0	1	0	0
STAT4	6775	broad.mit.edu	37	2	191937867	191937867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:191937867C>T	uc002usm.1	-	5	676	c.422G>A	c.(421-423)AGG>AAG	p.R141K	STAT4_uc002usn.1_Missense_Mutation_p.R141K|STAT4_uc002uso.2_Missense_Mutation_p.R141K	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	141					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			CTCCACATTCCTCTGTCTTTC	0.388													4	64					0	0	1	0	0
SDPR	8436	broad.mit.edu	37	2	192700975	192700975	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:192700975G>A	uc002utb.2	-	2	1282	c.952C>T	c.(952-954)CTG>TTG	p.L318L		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	318						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	CTGCTAGGCAGGTCTTCTGAC	0.542													18	96					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196664189	196664189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:196664189G>A	uc002utj.3	-	55	10285	c.10184C>T	c.(10183-10185)CCA>CTA	p.P3395L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3395					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CTGCAACATTGGAATAACCTA	0.353													6	74					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196746715	196746715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:196746715C>T	uc002utj.3	-	36	5866	c.5765G>A	c.(5764-5766)GGA>GAA	p.G1922E		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1922					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTTTCCTATTCCCTGTTTATA	0.338													5	24					0	0	1	0	0
STK17B	9262	broad.mit.edu	37	2	197004445	197004445	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:197004445G>A	uc002utk.2	-	7	1059	c.735C>T	c.(733-735)CTC>CTT	p.L245L	STK17B_uc010fsh.2_Silent_p.L245L	NM_004226	NP_004217	O94768	ST17B_HUMAN	serine/threonine kinase 17B	245	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity			lung(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.141)			GAGAAATATTGAGGTATGTTT	0.348													9	42					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197183807	197183807	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:197183807G>A	uc002utm.1	-	9	1990	c.1807C>T	c.(1807-1809)CAG>TAG	p.Q603*	HECW2_uc002utl.1_Nonsense_Mutation_p.Q247*	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	603					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						TCAGAGCCCTGATCGAGAGAC	0.587													4	31					0	0	1	0	0
GTF3C3	9330	broad.mit.edu	37	2	197664273	197664273	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:197664273G>A	uc002uts.2	-	1	153	c.63C>T	c.(61-63)TTC>TTT	p.F21F	GTF3C3_uc010zgu.1_Silent_p.F21F|GTF3C3_uc002utu.2_Silent_p.F21F	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	21						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						TCCGCCGTTCGAACTCCTCAA	0.532													10	108					0	0	1	0	0
C2orf66	401027	broad.mit.edu	37	2	197672262	197672262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:197672262G>A	uc002utv.2	-	2	1148	c.259C>T	c.(259-261)CCT>TCT	p.P87S		NM_213608	NP_998773	Q6UXQ4	CB066_HUMAN	hypothetical protein LOC401027 precursor	87						extracellular region					0						AGAGGTCTAGGATTTTCATTC	0.393													6	96					0	0	1	0	0
AOX1	316	broad.mit.edu	37	2	201460056	201460056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:201460056G>A	uc002uvx.2	+	3	266	c.165G>A	c.(163-165)ATG>ATA	p.M55I		NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	55	2Fe-2S ferredoxin-type.				inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	GTACAGTGATGATATCACGAT	0.383													7	17					0	0	1	0	0
FAM117B	150864	broad.mit.edu	37	2	203591054	203591054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:203591054C>T	uc010zhx.1	+	4	938	c.928C>T	c.(928-930)CAT>TAT	p.H310Y		NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	310										ovary(1)	1						GTCTCCATTTCATGGCAACCA	0.388													19	199					0	0	1	0	0
FAM117B	150864	broad.mit.edu	37	2	203621973	203621973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:203621973C>T	uc010zhx.1	+	6	1152	c.1142C>T	c.(1141-1143)CCC>CTC	p.P381L		NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	381										ovary(1)	1						GCTCCACCCCCCCTTGTACAG	0.493													19	226					0	0	1	0	0
ALS2CR8	79800	broad.mit.edu	37	2	203825973	203825973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:203825973C>T	uc002uzo.2	+	8	936	c.656C>T	c.(655-657)TCA>TTA	p.S219L	ALS2CR8_uc002uzn.2_Missense_Mutation_p.S117L|ALS2CR8_uc002uzm.2_Missense_Mutation_p.S219L|ALS2CR8_uc010zhy.1_Intron|ALS2CR8_uc010zhz.1_Intron|ALS2CR8_uc010ftu.1_RNA|ALS2CR8_uc010zia.1_Missense_Mutation_p.S143L|ALS2CR8_uc010zib.1_Missense_Mutation_p.S143L|ALS2CR8_uc010zic.1_Missense_Mutation_p.S131L|ALS2CR8_uc002uzp.2_Missense_Mutation_p.S219L	NM_001104586	NP_001098056	Q8N187	AL2S8_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	219										large_intestine(1)|ovary(1)	2						ATTGGAGATTCATACCGTGGC	0.383													15	221					0	0	1	0	0
NBEAL1	65065	broad.mit.edu	37	2	203977874	203977874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:203977874C>T	uc002uzt.3	+	16	2585	c.2252C>T	c.(2251-2253)TCC>TTC	p.S751F		NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	751							binding			ovary(1)|skin(1)	2						TCATCAGCCTCCTGGGGAGGA	0.478													32	542					0	0	1	0	0
NBEAL1	65065	broad.mit.edu	37	2	204073420	204073420	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:204073420G>A	uc002uzt.3	+	51	7813	c.7480G>A	c.(7480-7482)GAG>AAG	p.E2494K	NBEAL1_uc002uzs.3_Missense_Mutation_p.E1135K|NBEAL1_uc002uzu.2_5'UTR	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2494	WD 2.						binding			ovary(1)|skin(1)	2						ACACACCAACGAGGTACTGAG	0.403													61	426					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207175457	207175457	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:207175457A>G	uc002vbp.2	+	5	6455	c.6205A>G	c.(6205-6207)ATA>GTA	p.I2069V		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	2069							nucleic acid binding|zinc ion binding			ovary(3)	3						CCTGAGTGTAATAGTACCAGA	0.368													3	25					0	0	1	0	0
FZD5	7855	broad.mit.edu	37	2	208631716	208631716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:208631716G>A	uc002vcj.2	-	2	2158	c.1748C>T	c.(1747-1749)TCG>TTG	p.S583L		NM_003468	NP_003459	Q13467	FZD5_HUMAN	frizzled 5 precursor	583	Cytoplasmic (Potential).|PDZ-binding.				angiogenesis|anterior/posterior axis specification, embryo|axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to molecule of bacterial origin|embryonic camera-type eye development|gonad development|labyrinthine layer blood vessel development|positive regulation of interferon-gamma production|positive regulation of transcription from RNA polymerase II promoter|post-embryonic camera-type eye development|Spemann organizer formation|T cell differentiation in thymus|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell projection|cell surface|Golgi membrane|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|protein kinase binding|Wnt-protein binding			ovary(2)|lung(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.13)|Lung(261;0.134)		CTACACGTGCGACAGGGACAC	0.572													9	75					0	0	1	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208773295	208773295	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:208773295G>A	uc002vcl.2	-	6	2383	c.1893C>T	c.(1891-1893)TTC>TTT	p.F631F	PLEKHM3_uc002vcm.2_Missense_Mutation_p.S646F	NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	631					intracellular signal transduction		metal ion binding			ovary(1)	1						ATTCTCTGGGGAAAATTCTGA	0.438													11	52					0	0	1	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208841835	208841835	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:208841835G>A	uc002vcl.2	-	3	1576	c.1086C>T	c.(1084-1086)ATC>ATT	p.I362I	PLEKHM3_uc002vcm.2_Silent_p.I362I	NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	362	PH 2.				intracellular signal transduction		metal ion binding			ovary(1)	1						CTGATTTGAGGATGTTTTGGT	0.478													6	56					0	0	1	0	0
UNC80	285175	broad.mit.edu	37	2	210658535	210658535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:210658535G>A	uc010zjc.1	+	7	970	c.890G>A	c.(889-891)GGA>GAA	p.G297E	UNC80_uc002vdj.1_Missense_Mutation_p.G297E	NM_032504	NP_115893	Q8N2C7	UNC80_HUMAN	chromosome 2 open reading frame 21 isoform 1	297						integral to membrane					0						TCCTTTGATGGAAGTCTGTCC	0.483													5	55					0	0	1	0	0
MYL1	4632	broad.mit.edu	37	2	211163214	211163214	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:211163214G>A	uc002vec.2	-	3	363	c.234C>T	c.(232-234)GTC>GTT	p.V78V	MYL1_uc002veb.2_Silent_p.V34V	NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	78	EF-hand 1.				muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		GAGCTCGAAGGACATCACCGA	0.468													4	17					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	212288919	212288919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:212288919G>A	uc002veg.1	-	23	2925	c.2827C>T	c.(2827-2829)CCC>TCC	p.P943S	ERBB4_uc002veh.1_Missense_Mutation_p.P943S|ERBB4_uc010zji.1_Missense_Mutation_p.P933S|ERBB4_uc010zjj.1_Missense_Mutation_p.P933S	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	943	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		GTGCAGATGGGAGGCTGAGGC	0.388										TSP Lung(8;0.080)			7	28					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	212615400	212615400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:212615400G>A	uc002veg.1	-	5	684	c.586C>T	c.(586-588)CGT>TGT	p.R196C	ERBB4_uc002veh.1_Missense_Mutation_p.R196C|ERBB4_uc010zji.1_Missense_Mutation_p.R196C|ERBB4_uc010zjj.1_Missense_Mutation_p.R196C|ERBB4_uc010fut.1_Missense_Mutation_p.R196C	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	196	Cys-rich.|Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CCCCAGCAACGGCCAGTACAG	0.453										TSP Lung(8;0.080)			10	75					0	0	1	0	0
IKZF2	22807	broad.mit.edu	37	2	213921659	213921659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:213921659C>T	uc002vem.2	-	4	473	c.304G>A	c.(304-306)GAG>AAG	p.E102K	IKZF2_uc010fuu.2_Intron|IKZF2_uc002vej.2_Missense_Mutation_p.E49K|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Missense_Mutation_p.E102K|IKZF2_uc002vel.2_Missense_Mutation_p.E49K|IKZF2_uc010fuw.2_5'UTR|IKZF2_uc010fux.2_Intron|IKZF2_uc010fuy.2_Missense_Mutation_p.E102K|IKZF2_uc002ven.2_Missense_Mutation_p.E102K	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	102					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		ATTCCTCCCTCGCCTTGAAGC	0.512													4	4					0	0	1	0	0
VWC2L	402117	broad.mit.edu	37	2	215278924	215278924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:215278924C>T	uc002vet.2	+	2	137	c.7C>T	c.(7-9)CTT>TTT	p.L3F	VWC2L_uc010zjl.1_Missense_Mutation_p.L3F	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	3						extracellular region					0						GGGGATGGCTCTTCATATTCA	0.433													8	28					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215840562	215840562	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:215840562C>T	uc002vew.2	-	34	5548	c.5328G>A	c.(5326-5328)GAG>GAA	p.E1776E	ABCA12_uc002vev.2_Silent_p.E1458E|ABCA12_uc010zjn.1_Silent_p.E703E	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1776					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		AGATCTGAATCTCTGGATAAC	0.448													8	21					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215851370	215851370	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:215851370C>T	uc002vew.2	-	28	4279	c.4059G>A	c.(4057-4059)AAG>AAA	p.K1353K	ABCA12_uc002vev.2_Silent_p.K1035K|ABCA12_uc010zjn.1_Silent_p.K280K	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1353	ABC transporter 1.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		AGCCATAGATCTTTGTGACCC	0.453													7	32					0	0	1	0	0
FN1	2335	broad.mit.edu	37	2	216288916	216288916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:216288916G>A	uc002vfa.2	-	8	1435	c.1169C>T	c.(1168-1170)TCG>TTG	p.S390L	FN1_uc002vfb.2_Missense_Mutation_p.S390L|FN1_uc002vfc.2_Missense_Mutation_p.S390L|FN1_uc002vfd.2_Missense_Mutation_p.S390L|FN1_uc002vfe.2_Missense_Mutation_p.S390L|FN1_uc002vff.2_Missense_Mutation_p.S390L|FN1_uc002vfg.2_Missense_Mutation_p.S390L|FN1_uc002vfh.2_Missense_Mutation_p.S390L|FN1_uc002vfi.2_Missense_Mutation_p.S390L|FN1_uc002vfj.2_Missense_Mutation_p.S390L|FN1_uc002vfl.2_Missense_Mutation_p.S390L	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	390	Fibronectin type-II 1.|Collagen-binding.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTCATAATTCGAAGTTGTGCT	0.512													13	107					0	0	1	0	0
TNS1	7145	broad.mit.edu	37	2	218669221	218669221	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:218669221G>A	uc002vgt.2	-	33	5567	c.5169C>T	c.(5167-5169)TTC>TTT	p.F1723F	TNS1_uc002vgr.2_Silent_p.F1709F|TNS1_uc002vgs.2_Silent_p.F1702F|TNS1_uc002vgq.2_Silent_p.F223F	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1723						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		CCTTGGAGACGAAGTTGACGA	0.637													6	107					0	0	1	0	0
TNS1	7145	broad.mit.edu	37	2	218682840	218682840	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:218682840G>A	uc002vgt.2	-	24	4301	c.3903C>T	c.(3901-3903)GGC>GGT	p.G1301G	TNS1_uc002vgr.2_Silent_p.G1288G|TNS1_uc002vgs.2_Silent_p.G1280G|TNS1_uc010zjv.1_Silent_p.G1280G	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1301						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		CGAGGTGACGGCCCAGGCTGG	0.657													4	40					0	0	1	0	0
TNS1	7145	broad.mit.edu	37	2	218683344	218683344	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:218683344G>A	uc002vgt.2	-	24	3797	c.3399C>T	c.(3397-3399)AGC>AGT	p.S1133S	TNS1_uc002vgr.2_Silent_p.S1120S|TNS1_uc002vgs.2_Silent_p.S1112S|TNS1_uc010zjv.1_Silent_p.S1112S	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1133	Ser-rich.					cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		GAGGAGAAGAGCTCTGGTAGT	0.622													4	57					0	0	1	0	0
RUFY4	285180	broad.mit.edu	37	2	218940231	218940231	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:218940231G>A	uc002vgw.2	+	10	2341	c.497G>A	c.(496-498)TGG>TAG	p.W166*	RUFY4_uc002vgy.1_RNA|RUFY4_uc010fvl.1_Nonsense_Mutation_p.W166*	NM_198483	NP_940885	Q6ZNE9	RUFY4_HUMAN	RUN and FYVE domain containing 4	339							metal ion binding			pancreas(1)	1		Renal(207;0.0915)		Epithelial(149;4.11e-06)|all cancers(144;0.000519)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GAAGCAGAGTGGAGTCACGTC	0.607													4	25					0	0	1	0	0
RUFY4	285180	broad.mit.edu	37	2	218947900	218947900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:218947900G>A	uc002vgw.2	+	12	2748	c.904G>A	c.(904-906)GAT>AAT	p.D302N	RUFY4_uc002vgy.1_RNA|RUFY4_uc010fvl.1_Missense_Mutation_p.D302N	NM_198483	NP_940885	Q6ZNE9	RUFY4_HUMAN	RUN and FYVE domain containing 4	475	FYVE-type.						metal ion binding			pancreas(1)	1		Renal(207;0.0915)		Epithelial(149;4.11e-06)|all cancers(144;0.000519)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		TGAGAGGAGGGATGCCATGTA	0.597													6	67					0	0	1	0	0
RUFY4	285180	broad.mit.edu	37	2	218947958	218947958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:218947958G>A	uc002vgw.2	+	12	2806	c.962G>A	c.(961-963)AGG>AAG	p.R321K	RUFY4_uc002vgy.1_RNA|RUFY4_uc010fvl.1_Missense_Mutation_p.R321K	NM_198483	NP_940885	Q6ZNE9	RUFY4_HUMAN	RUN and FYVE domain containing 4	494	FYVE-type.						metal ion binding			pancreas(1)	1		Renal(207;0.0915)		Epithelial(149;4.11e-06)|all cancers(144;0.000519)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GCCATGAAGAGGCGGGTGTTG	0.587													7	70					0	0	1	0	0
CXCR2	3579	broad.mit.edu	37	2	218999542	218999542	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:218999542G>A	uc002vgz.1	+	4	243	c.18G>A	c.(16-18)ATG>ATA	p.M6I	CXCR2_uc002vha.1_Missense_Mutation_p.M6I|CXCR2_uc002vhb.1_Missense_Mutation_p.M6I	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	6	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						ATTTTAACATGGAGAGTGACA	0.403													6	64					0	0	1	0	0
CXCR2	3579	broad.mit.edu	37	2	219000440	219000440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:219000440C>T	uc002vgz.1	+	4	1141	c.916C>T	c.(916-918)CAC>TAC	p.H306Y	CXCR2_uc002vha.1_Missense_Mutation_p.H306Y|CXCR2_uc002vhb.1_Missense_Mutation_p.H306Y	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	306	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						GGGCATCCTTCACAGCTGCCT	0.562													15	96					0	0	1	0	0
SLC11A1	6556	broad.mit.edu	37	2	219248997	219248997	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:219248997T>C	uc002vhv.2	+	3	522	c.182T>C	c.(181-183)TTC>TCC	p.F61S	SLC11A1_uc010zkb.1_Missense_Mutation_p.F61S|SLC11A1_uc010fvp.1_Missense_Mutation_p.F61S|SLC11A1_uc010fvq.1_5'UTR|SLC11A1_uc010zkc.1_5'UTR|SLC11A1_uc002vhu.1_Intron|SLC11A1_uc002vhw.2_5'UTR|SLC11A1_uc010fvr.2_5'Flank	NM_000578	NP_000569	P49279	NRAM1_HUMAN	natural resistance-associated macrophage protein	61	Helical; (Potential).|Pro/Ser-rich.				activation of protein kinase activity|antigen processing and presentation of peptide antigen|cadmium ion transmembrane transport|cellular cadmium ion homeostasis|cellular iron ion homeostasis|defense response to Gram-negative bacterium|defense response to protozoan|divalent metal ion export|inflammatory response|interleukin-2 production|interleukin-3 production|iron ion transport|L-arginine import|macrophage activation|MHC class II biosynthetic process|mRNA stabilization|multicellular organismal iron ion homeostasis|negative regulation of cytokine production|nitrite transport|phagocytosis|positive regulation of dendritic cell antigen processing and presentation|positive regulation of interferon-gamma production|positive regulation of phagocytosis|positive regulation of T-helper 1 type immune response|positive regulation of transcription from RNA polymerase II promoter|respiratory burst|response to interferon-gamma|response to lipopolysaccharide|T cell cytokine production|T cell proliferation involved in immune response|vacuolar acidification|wound healing	integral to plasma membrane|late endosome membrane|lysosome|phagocytic vesicle membrane|tertiary granule membrane	manganese ion transmembrane transporter activity|metal ion:hydrogen antiporter activity|protein homodimerization activity			ovary(3)|central_nervous_system(1)	4		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000195)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTATGGGCCTTCACGGGGCCT	0.602													6	135					0	0	1	0	0
VIL1	7429	broad.mit.edu	37	2	219290451	219290451	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:219290451C>T	uc002via.2	+	4	329	c.264C>T	c.(262-264)TTC>TTT	p.F88F	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Silent_p.F88F|VIL1_uc002vic.1_Silent_p.F88F	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	88	Core.|Necessary for homodimerization.			DDFLKG->NTLLKE: Inhibits actin-severing activity and motility of the S.flexneri, does not inhibit activities regarding actin nucleation, actin capping and actin bundling, lamellipodium or ruffle localization and cell morphology; when associated with 125-A--S-129.	actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGGATGACTTCCTGAAGGGCC	0.612													5	94					0	0	1	0	0
VIL1	7429	broad.mit.edu	37	2	219292725	219292725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:219292725G>A	uc002via.2	+	5	450	c.385G>A	c.(385-387)GTG>ATG	p.V129M	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Missense_Mutation_p.V129M|VIL1_uc002vic.1_Missense_Mutation_p.V129M	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	129	Core.			GMKHV->AMHKTS: Inhibits actin-severing activity and motility of the S.flexneri, does not inhibit activities regarding actin nucleation, actin capping and actin bundling, lamellipodium or ruffle localization and cell morphology; when associated with 86-N--E-91.	actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CATGAAGCACGTGGAGACCAA	0.612													16	157					0	0	1	0	0
VIL1	7429	broad.mit.edu	37	2	219292964	219292964	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:219292964G>A	uc002via.2	+	6	536	c.471G>A	c.(469-471)TGG>TGA	p.W157*	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Nonsense_Mutation_p.W157*|VIL1_uc002vic.1_Nonsense_Mutation_p.W157*	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	157	Gelsolin-like 2.|Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGATGTCCTGGAAGAGTTTCA	0.562													8	90					0	0	1	0	0
VIL1	7429	broad.mit.edu	37	2	219292991	219292991	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:219292991C>T	uc002via.2	+	6	563	c.498C>T	c.(496-498)TTC>TTT	p.F166F	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Silent_p.F166F|VIL1_uc002vic.1_Silent_p.F166F	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	166	Gelsolin-like 2.|Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGGATGTTTTCCTCCTGGACC	0.547													5	89					0	0	1	0	0
STK36	27148	broad.mit.edu	37	2	219559031	219559031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:219559031C>T	uc002viu.2	+	20	2647	c.2381C>T	c.(2380-2382)TCG>TTG	p.S794L	STK36_uc002viv.2_Missense_Mutation_p.S794L|STK36_uc002viw.2_5'Flank|STK36_uc002vix.2_5'Flank	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	794					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		TTTACCCATTCGCATGTCGTC	0.468													18	115					0	0	1	0	0
STK36	27148	broad.mit.edu	37	2	219561300	219561300	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:219561300C>T	uc002viu.2	+	22	2828	c.2562C>T	c.(2560-2562)ATC>ATT	p.I854I	STK36_uc002viv.2_Intron|STK36_uc002viw.2_Silent_p.I33I|STK36_uc002vix.2_5'UTR	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	854					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		GCCTCCTTATCCTTCTGTTGC	0.507													6	121					0	0	1	0	0
TTLL4	9654	broad.mit.edu	37	2	219603031	219603031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:219603031C>T	uc002viy.2	+	3	1002	c.632C>T	c.(631-633)TCC>TTC	p.S211F	TTLL4_uc010zkl.1_Missense_Mutation_p.S46F|TTLL4_uc010fvx.2_Missense_Mutation_p.S211F	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	211					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		CCACTCTCTTCCTCCTATAAG	0.532													12	73					0	0	1	0	0
TTLL4	9654	broad.mit.edu	37	2	219604796	219604796	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:219604796C>T	uc002viy.2	+	4	1873	c.1503C>T	c.(1501-1503)CTC>CTT	p.L501L	TTLL4_uc010zkl.1_Silent_p.L336L|TTLL4_uc010fvx.2_Silent_p.L501L	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	501					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		CTACTGACCTCCAGCCAGATC	0.458													6	41					0	0	1	0	0
CYP27A1	1593	broad.mit.edu	37	2	219677348	219677348	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:219677348C>T	uc002viz.3	+	4	1154	c.720C>T	c.(718-720)TTC>TTT	p.F240F		NM_000784	NP_000775	Q02318	CP27A_HUMAN	cytochrome P450, family 27, subfamily A,	240					bile acid biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;9.48e-07)|all cancers(144;0.000171)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00981)	Cholecalciferol(DB00169)	CCGTGACCTTCGTCAGATCCA	0.552													69	248					0	0	1	0	0
WNT10A	80326	broad.mit.edu	37	2	219757816	219757817	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:219757816_219757817CC>TT	uc002vjd.1	+	4	1540_1541	c.1077_1078CC>TT	c.(1075-1080)GGCCGC>GGTTGC	p.R360C		NM_025216	NP_079492	Q9GZT5	WN10A_HUMAN	wingless-type MMTV integration site family,	360			R -> C (found in a patient with unclassified form of ectodermal dysplasia).		anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|female gonad development|hair follicle morphogenesis|odontogenesis|regulation of odontogenesis of dentine-containing tooth|sebaceous gland development|skin development|tongue development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			lung(1)|skin(1)	2		Renal(207;0.0474)		Epithelial(149;4.26e-07)|all cancers(144;8.8e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCACCGTGGGCCGCCTGTGCAA	0.604													11	30					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219887962	219887962	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:219887962G>A	uc002vjl.1	-	16	2871	c.2787C>T	c.(2785-2787)CCC>CCT	p.P929P		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	929	MSP.					integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCCCCCTGGAGGGCTGGACAG	0.602													10	43					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219894839	219894839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:219894839G>A	uc002vjl.1	-	10	1337	c.1253C>T	c.(1252-1254)CCG>CTG	p.P418L	CCDC108_uc010fwa.1_5'UTR|CCDC108_uc010zkp.1_Missense_Mutation_p.P407L|CCDC108_uc010zkq.1_Missense_Mutation_p.P353L	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	418						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTTCTCTCCCGGAAGCACGAT	0.562											OREG0015211	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	63					0	0	1	0	0
SLC23A3	151295	broad.mit.edu	37	2	220026918	220026918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220026918G>A	uc010zks.1	-	12	1657	c.1546C>T	c.(1546-1548)CTT>TTT	p.L516F	NHEJ1_uc002vjp.3_5'Flank|NHEJ1_uc002vjq.3_RNA|SLC23A3_uc010zkr.1_Missense_Mutation_p.L524F|SLC23A3_uc010fwb.2_Missense_Mutation_p.L399F	NM_001144889	NP_001138361	Q6PIS1	S23A3_HUMAN	solute carrier family 23 (nucleobase	516	Cytoplasmic (Potential).				transmembrane transport	integral to membrane	protein binding|transporter activity				0		Renal(207;0.0474)		Epithelial(149;9.27e-07)|all cancers(144;0.000156)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCTCGCTCAAGCTGTGTGCCT	0.572													6	56					0	0	1	0	0
C2orf24	27013	broad.mit.edu	37	2	220037337	220037337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220037337G>A	uc002vju.3	-	8	1356	c.1204C>T	c.(1204-1206)CGC>TGC	p.R402C	NHEJ1_uc002vjq.3_5'Flank|SLC23A3_uc010zkr.1_5'Flank|SLC23A3_uc010zks.1_5'Flank|SLC23A3_uc010fwb.2_5'Flank|C2orf24_uc002vjv.2_Missense_Mutation_p.R402C	NM_015680	NP_056495	Q9BV87	CNPD1_HUMAN	hypothetical protein LOC27013	402					regulation of cyclin-dependent protein kinase activity	integral to membrane	protein kinase binding				0		Renal(207;0.0915)		Epithelial(149;8.92e-07)|all cancers(144;0.000151)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GACTTGAGGCGAGCCAGCTCC	0.542													13	90					0	0	1	0	0
ANKZF1	55139	broad.mit.edu	37	2	220097283	220097283	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220097283C>T	uc002vkg.2	+	5	610	c.436C>T	c.(436-438)CGG>TGG	p.R146W	ATG9A_uc002vke.1_5'Flank|ATG9A_uc002vkf.1_5'Flank|ANKZF1_uc010zkv.1_Missense_Mutation_p.R90W|ANKZF1_uc010zkw.1_5'UTR|ANKZF1_uc002vkh.2_5'UTR|ANKZF1_uc002vki.2_Missense_Mutation_p.R146W|ANKZF1_uc002vkj.1_Missense_Mutation_p.R134W	NM_018089	NP_060559	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing	146						intracellular	zinc ion binding			ovary(2)	2		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GACACTGGATCGGGAGAGGGC	0.507													10	63					0	0	1	0	0
ANKZF1	55139	broad.mit.edu	37	2	220097337	220097337	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220097337C>T	uc002vkg.2	+	5	664	c.490C>T	c.(490-492)CGA>TGA	p.R164*	ATG9A_uc002vke.1_5'Flank|ATG9A_uc002vkf.1_5'Flank|ANKZF1_uc010zkv.1_Nonsense_Mutation_p.R108*|ANKZF1_uc010zkw.1_5'UTR|ANKZF1_uc002vkh.2_5'UTR|ANKZF1_uc002vki.2_Nonsense_Mutation_p.R164*|ANKZF1_uc002vkj.1_Nonsense_Mutation_p.R152*	NM_018089	NP_060559	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing	164						intracellular	zinc ion binding			ovary(2)	2		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TTACCCTCATCGAGTTCTTTT	0.537													9	85					0	0	1	0	0
TUBA4A	7277	broad.mit.edu	37	2	220115714	220115714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220115714G>A	uc002vkt.1	-	4	765	c.707C>T	c.(706-708)TCC>TTC	p.S236F	TUBA4A_uc010zkz.1_Missense_Mutation_p.S221F|TUBA4B_uc002vku.2_5'Flank|TUBA4B_uc002vkv.1_5'Flank	NM_006000	NP_005991	P68366	TBA4A_HUMAN	tubulin, alpha 4a	236					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|platelet activation|platelet degranulation|protein polymerization	cytosol|extracellular region|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)	3		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000191)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGTGATGGAGGAGACAATTTG	0.557													10	51					0	0	1	0	0
TUBA4A	7277	broad.mit.edu	37	2	220116371	220116371	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220116371C>T	uc002vkt.1	-	3	349	c.291G>A	c.(289-291)GAG>GAA	p.E97E	TUBA4A_uc010zkz.1_Silent_p.E82E|TUBA4B_uc002vku.2_5'Flank|TUBA4B_uc002vkv.1_5'Flank	NM_006000	NP_005991	P68366	TBA4A_HUMAN	tubulin, alpha 4a	97					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|platelet activation|platelet degranulation|protein polymerization	cytosol|extracellular region|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)	3		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000191)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGGCAGCATCCTCTTTCCCAG	0.527													4	39					0	0	1	0	0
PTPRN	5798	broad.mit.edu	37	2	220156215	220156215	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220156215G>A	uc002vkz.2	-	20	2795	c.2706C>T	c.(2704-2706)TCC>TCT	p.S902S	PTPRN_uc010zlc.1_Silent_p.S812S|PTPRN_uc002vla.2_Silent_p.S873S	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	902	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		TGATGGGGCAGGAGCGGCCCC	0.587													4	56					0	0	1	0	0
PTPRN	5798	broad.mit.edu	37	2	220167333	220167333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220167333C>T	uc002vkz.2	-	5	693	c.604G>A	c.(604-606)GAA>AAA	p.E202K	PTPRN_uc010zlc.1_Missense_Mutation_p.E112K|PTPRN_uc002vla.2_Missense_Mutation_p.E202K	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	202	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		AAGGCAGGTTCGTAACTCAGT	0.632													7	100					0	0	1	0	0
PTPRN	5798	broad.mit.edu	37	2	220172257	220172257	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220172257C>T	uc002vkz.2	-	3	278	c.189G>A	c.(187-189)CAG>CAA	p.Q63Q	PTPRN_uc010zlc.1_5'UTR|PTPRN_uc002vla.2_Silent_p.Q63Q	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	63	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		CCACTCCCACCTGGCACTGCC	0.552													20	73					0	0	1	0	0
DNPEP	23549	broad.mit.edu	37	2	220247935	220247935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220247935G>A	uc010zlg.1	-	10	960	c.878C>T	c.(877-879)GCC>GTC	p.A293V	DNPEP_uc010zlf.1_RNA|DNPEP_uc002vle.2_Missense_Mutation_p.A285V|DNPEP_uc002vlf.1_Missense_Mutation_p.A271V|DNPEP_uc002vlh.2_Missense_Mutation_p.A232V|DNPEP_uc002vli.1_Missense_Mutation_p.A232V	NM_012100	NP_036232	Q9ULA0	DNPEP_HUMAN	aspartyl aminopeptidase	275					peptide metabolic process|proteolysis	cytoplasm	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0		Renal(207;0.0474)		Epithelial(149;1.09e-06)|all cancers(144;0.000179)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)	L-Glutamic Acid(DB00142)	ATCTATCAAGGCCTGGTTCAG	0.587													4	57					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220309382	220309382	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220309382G>A	uc010fwg.2	+	2	396	c.396G>A	c.(394-396)GAG>GAA	p.E132E	SPEG_uc002vlm.2_RNA|SPEG_uc010fwh.1_5'UTR|SPEG_uc002vln.1_5'UTR	NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	132					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CAGACTCAGAGACGGCTGAGG	0.632													7	44					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220333927	220333927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220333927G>A	uc010fwg.2	+	13	3541	c.3541G>A	c.(3541-3543)GAG>AAG	p.E1181K		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1181					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		AGAGCAGGGTGAGCTGGAGCG	0.652													5	29					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220350093	220350093	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220350093C>T	uc010fwg.2	+	31	7635	c.7635C>T	c.(7633-7635)CTC>CTT	p.L2545L		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2545					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GAAGCCGGCTCCGCTGGGGCT	0.622													17	110					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220353934	220353935	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220353934_220353935GG>AA	uc010fwg.2	+	35	8308_8309	c.8308_8309GG>AA	c.(8308-8310)GGT>AAT	p.G2770N		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2770					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CTTTGTCAGGGGTACTCAAGGT	0.609													11	118					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220356962	220356962	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220356962G>A	uc010fwg.2	+	40	9591	c.9591G>A	c.(9589-9591)AAG>AAA	p.K3197K		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	3197	Protein kinase 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		TCTTGCGAAAGGTTCTCTCTG	0.612													8	39					0	0	1	0	0
OBSL1	23363	broad.mit.edu	37	2	220420865	220420865	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:220420865G>A	uc010fwk.2	-	14	4543	c.4486C>T	c.(4486-4488)CTG>TTG	p.L1496L	OBSL1_uc002vmh.1_Silent_p.L395L|OBSL1_uc010zli.1_Silent_p.L303L|OBSL1_uc010fwl.1_Silent_p.L971L	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	1496	Ig-like 12.				cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		GCCATGGACAGGCGAGAGTCG	0.672													12	30					0	0	1	0	0
EPHA4	2043	broad.mit.edu	37	2	222347282	222347282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:222347282C>T	uc002vmq.2	-	5	1150	c.1108G>A	c.(1108-1110)GGA>AGA	p.G370R	EPHA4_uc002vmr.2_Missense_Mutation_p.G370R|EPHA4_uc010zlm.1_Missense_Mutation_p.G311R|EPHA4_uc010zln.1_Missense_Mutation_p.G370R	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	370	Extracellular (Potential).|Fibronectin type-III 1.		G -> E (in a bladder carcinoma NOS sample; somatic mutation).			integral to plasma membrane	ATP binding|ephrin receptor activity	p.G370E(1)		lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		TCACCAGCTCCACATTTCTTG	0.512													19	73					0	0	1	0	0
PAX3	5077	broad.mit.edu	37	2	223086039	223086039	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:223086039T>C	uc010fwo.2	-	6	1226	c.860A>G	c.(859-861)AAC>AGC	p.N287S	PAX3_uc002vmt.1_Missense_Mutation_p.N287S|PAX3_uc002vmy.1_Missense_Mutation_p.N286S|PAX3_uc002vmv.1_Missense_Mutation_p.N287S|PAX3_uc002vmw.1_Missense_Mutation_p.N287S|PAX3_uc002vmx.1_Missense_Mutation_p.N287S	NM_181457	NP_852122	P23760	PAX3_HUMAN	paired box 3 isoform PAX3	287					apoptosis|organ morphogenesis|positive regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX3/FOXO1(749)|PAX3/NCOA1(8)|PAX3/NCOA2(4)	soft_tissue(761)|ovary(4)|skin(1)	766		Renal(207;0.0183)		Epithelial(121;4.13e-10)|all cancers(144;1.85e-07)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AATGAGATGGTTGAAAGCCAT	0.507			T	FOXO1A|NCOA1	alveolar rhabdomyosarcoma		Waardenburg syndrome; craniofacial-deafness-hand syndrome						4	29					0	0	1	0	0
SGPP2	130367	broad.mit.edu	37	2	223339386	223339386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:223339386C>T	uc010zlo.1	+	2	319	c.319C>T	c.(319-321)CCA>TCA	p.P107S	SGPP2_uc010zlp.1_5'UTR	NM_152386	NP_689599	Q8IWX5	SGPP2_HUMAN	sphingosine-1-phosphate phosphotase 2	107	Helical; (Potential).				sphingosine metabolic process	endoplasmic reticulum membrane|integral to membrane	dihydrosphingosine-1-phosphate phosphatase activity|sphingosine-1-phosphate phosphatase activity			central_nervous_system(1)|skin(1)	2		Renal(207;0.0376)		Epithelial(121;2.08e-09)|all cancers(144;9.25e-07)|LUSC - Lung squamous cell carcinoma(224;0.011)|Lung(261;0.0143)		CACGTTTCTTCCATTCACTCA	0.353													5	54					0	0	1	0	0
SCG2	7857	broad.mit.edu	37	2	224462877	224462877	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:224462877G>A	uc002vnm.2	-	2	1257	c.1124C>T	c.(1123-1125)CCG>CTG	p.P375L		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	375					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		TGATCCATTCGGCTTCTCCCC	0.458													14	43					0	0	1	0	0
SERPINE2	5270	broad.mit.edu	37	2	224866465	224866465	+	Silent	SNP	G	A	A	rs3795875		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:224866465G>A	uc002vnu.2	-	2	396	c.153C>T	c.(151-153)ATC>ATT	p.I51I	SERPINE2_uc002vnt.2_Silent_p.I51I|SERPINE2_uc010zlr.1_Silent_p.I63I|SERPINE2_uc002vnv.2_Silent_p.I51I	NM_006216	NP_006207	P07093	GDN_HUMAN	plasminogen activator inhibitor type 1, member 2	51					negative regulation of blood coagulation|negative regulation of plasminogen activation|negative regulation of platelet aggregation|positive regulation of astrocyte differentiation|regulation of cell migration	cytosol|extracellular matrix|extracellular space|extrinsic to external side of plasma membrane|neuromuscular junction|platelet alpha granule	heparin binding|receptor binding|serine-type endopeptidase inhibitor activity			breast(2)|ovary(1)|central_nervous_system(1)	4		Renal(207;0.025)|all_lung(227;0.0586)|Lung NSC(271;0.0682)|all_hematologic(139;0.0797)		Epithelial(121;5.68e-10)|all cancers(144;1.9e-07)|Lung(261;0.0088)|LUSC - Lung squamous cell carcinoma(224;0.00902)		GAGAGATCACGATGTTGTCAT	0.567													8	64					0	0	1	0	0
CUL3	8452	broad.mit.edu	37	2	225378273	225378273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:225378273G>A	uc002vny.2	-	5	1006	c.622C>T	c.(622-624)CCT>TCT	p.P208S	CUL3_uc010zls.1_Missense_Mutation_p.P142S|CUL3_uc010fwy.1_Missense_Mutation_p.P214S	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	208					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		TCCAAAAAAGGAGCCTCAAAA	0.303													10	28					0	0	1	0	0
KIAA1486	57624	broad.mit.edu	37	2	226446965	226446965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:226446965G>A	uc002voe.2	+	4	1007	c.832G>A	c.(832-834)GAC>AAC	p.D278N	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.D48N	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	278										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		TATCTTTGACGACTTGGGCCA	0.537													8	91					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227886826	227886826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:227886826G>A	uc010zlt.1	-	43	4808	c.4154C>T	c.(4153-4155)CCA>CTA	p.P1385L		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1385	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TCTCATGCCTGGCGCCCCAGG	0.562													12	193					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227886836	227886836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:227886836G>A	uc010zlt.1	-	43	4798	c.4144C>T	c.(4144-4146)CCT>TCT	p.P1382S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1382	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GGCGCCCCAGGAAGGCCTGGG	0.567													35	173					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227920702	227920702	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:227920702G>A	uc010zlt.1	-	30	3329	c.2675C>T	c.(2674-2676)CCC>CTC	p.P892L		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	892	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		ATCTCCAAAGGGACCTGGGAT	0.592													10	42					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227924334	227924334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:227924334G>A	uc010zlt.1	-	28	2824	c.2170C>T	c.(2170-2172)CGT>TGT	p.R724C		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	724	Triple-helical region.|Cell attachment site (Potential).				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		ATGTCACCACGAAAACCTATT	0.413													17	60					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227963492	227963492	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:227963492G>A	uc010zlt.1	-	19	1776	c.1122C>T	c.(1120-1122)TTC>TTT	p.F374F		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	374	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		AGCGGCCAGGGAACCCTGGGT	0.502													4	29					0	0	1	0	0
COL4A3	1285	broad.mit.edu	37	2	228172560	228172560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:228172560G>A	uc002vom.1	+	48	4549	c.4387G>A	c.(4387-4389)GGG>AGG	p.G1463R	COL4A3_uc002von.1_Missense_Mutation_p.G1463R|COL4A3_uc002voo.1_Missense_Mutation_p.G1463R|COL4A3_uc002vop.1_Intron|uc002voq.1_Intron|uc002vor.1_Intron|COL4A3_uc010fxf.1_5'UTR	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	1463	Collagen IV NC1.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		ATGTCCAGAGGGGACAGTGCC	0.502													9	40					0	0	1	0	0
AGFG1	3267	broad.mit.edu	37	2	228419176	228419176	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:228419176C>T	uc002vpc.2	+	13	1904	c.1654C>T	c.(1654-1656)CCA>TCA	p.P552S	AGFG1_uc002vpd.2_Missense_Mutation_p.P574S|AGFG1_uc002vpe.2_Missense_Mutation_p.P550S|AGFG1_uc002vpf.2_Missense_Mutation_p.P512S	NM_004504	NP_004495	P52594	AGFG1_HUMAN	HIV-1 Rev binding protein isoform 2	552					cell differentiation|mRNA export from nucleus|multicellular organismal development|regulation of ARF GTPase activity|spermatogenesis	cytoplasmic membrane-bounded vesicle|Golgi apparatus|nuclear pore	ARF GTPase activator activity|DNA binding|protein binding|RNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4						AGGACAATTTCCAACAGGAAG	0.343													5	29					0	0	1	0	0
C2orf83	56918	broad.mit.edu	37	2	228476242	228476242	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:228476242G>A	uc002vph.2	-	3	556	c.321C>T	c.(319-321)GCC>GCT	p.A107A	C2orf83_uc010zlu.1_3'UTR	NM_020161	NP_064546	Q53S99	CB083_HUMAN	hypothetical protein LOC56918 isoform 1	107						membrane	folic acid binding|reduced folate carrier activity				0						AGAGAGTTTCGGCTGAAGCCT	0.547													25	97					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228846565	228846565	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:228846565G>A	uc002vpq.2	-	12	5018	c.4971C>T	c.(4969-4971)GTC>GTT	p.V1657V	SPHKAP_uc002vpp.2_Silent_p.V1628V|SPHKAP_uc010zlx.1_3'UTR	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1657						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CCAGCTGCACGACATCTAGAA	0.478													3	11					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881353	228881353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:228881353G>A	uc002vpq.2	-	7	4264	c.4217C>T	c.(4216-4218)TCC>TTC	p.S1406F	SPHKAP_uc002vpp.2_Missense_Mutation_p.S1406F|SPHKAP_uc010zlx.1_Missense_Mutation_p.S1406F	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1406						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTGGCACGAGGAAGTTTCTTT	0.438													4	83					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228886515	228886515	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:228886515C>T	uc002vpq.2	-	6	656	c.609G>A	c.(607-609)ACG>ACA	p.T203T	SPHKAP_uc002vpp.2_Silent_p.T203T|SPHKAP_uc010zlx.1_Silent_p.T203T	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	203						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AGGAACAGTTCGTGTCATCCT	0.463													5	41					0	0	1	0	0
DNER	92737	broad.mit.edu	37	2	230272017	230272017	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:230272017A>C	uc002vpv.2	-	10	1801	c.1654T>G	c.(1654-1656)TGT>GGT	p.C552G		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	552	Extracellular (Potential).|Follistatin-like.|EGF-like 9.				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		CCGTTCAGACAGCTGACGTTA	0.527													6	24					0	0	1	0	0
DNER	92737	broad.mit.edu	37	2	230312225	230312225	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:230312225C>T	uc002vpv.2	-	8	1440	c.1293G>A	c.(1291-1293)GTG>GTA	p.V431V	DNER_uc010zly.1_Silent_p.V159V	NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	431	Extracellular (Potential).|EGF-like 6.				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		CGCAGGGGTCCACCTTTTCTT	0.488													11	21					0	0	1	0	0
SP110	3431	broad.mit.edu	37	2	231036812	231036812	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:231036812C>T	uc002vqh.3	-	16	2025	c.1785G>A	c.(1783-1785)CTG>CTA	p.L595L	SP110_uc002vqg.3_Silent_p.L595L	NM_004509	NP_004500	Q9HB58	SP110_HUMAN	SP110 nuclear body protein isoform a	595	Bromo.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|signal transducer activity|zinc ion binding			ovary(2)|breast(2)	4		Renal(207;0.0112)|all_lung(227;0.0223)|Lung NSC(271;0.0983)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.169)		Epithelial(121;2.61e-12)|all cancers(144;6.39e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.0097)		TCTGCCTCTCCAGGGTCTTAG	0.522													10	105					0	0	1	0	0
SP140	11262	broad.mit.edu	37	2	231157414	231157414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:231157414G>A	uc002vql.2	+	20	1994	c.1879G>A	c.(1879-1881)GAA>AAA	p.E627K	SP140_uc010zma.1_RNA|SP140_uc002vqn.2_Missense_Mutation_p.E513K|SP140_uc002vqm.2_Missense_Mutation_p.E567K|SP140_uc010fxl.2_Missense_Mutation_p.E600K	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	627	SAND.				defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		CACCCCCACGGAATTTGAAAT	0.507													21	99					0	0	1	0	0
ITM2C	81618	broad.mit.edu	37	2	231738192	231738192	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:231738192C>T	uc002vqz.2	+	2	301	c.181C>T	c.(181-183)CTG>TTG	p.L61L	ITM2C_uc002vra.2_Intron|ITM2C_uc002vrb.2_Silent_p.L61L|ITM2C_uc002vrc.2_5'Flank|ITM2C_uc002vrd.2_5'Flank	NM_030926	NP_112188	Q9NQX7	ITM2C_HUMAN	integral membrane protein 2C isoform 1	61	Helical; Signal-anchor for type II membrane protein; (Potential).				negative regulation of neuron projection development|neuron differentiation	Golgi apparatus|integral to membrane|lysosomal membrane|perinuclear region of cytoplasm	beta-amyloid binding				0		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;8.47e-12)|all cancers(144;3.44e-09)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		CGTGTGCTACCTGTCGATGGG	0.632													12	44					0	0	1	0	0
ITM2C	81618	broad.mit.edu	37	2	231742781	231742781	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:231742781C>T	uc002vqz.2	+	6	891	c.771C>T	c.(769-771)TTC>TTT	p.F257F	ITM2C_uc002vra.2_Silent_p.F210F|ITM2C_uc002vrb.2_Silent_p.F220F|ITM2C_uc002vrc.2_Silent_p.F146F|ITM2C_uc002vrd.2_Silent_p.F109F	NM_030926	NP_112188	Q9NQX7	ITM2C_HUMAN	integral membrane protein 2C isoform 1	257					negative regulation of neuron projection development|neuron differentiation	Golgi apparatus|integral to membrane|lysosomal membrane|perinuclear region of cytoplasm	beta-amyloid binding				0		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;8.47e-12)|all cancers(144;3.44e-09)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		AGAACACCTTCGTGGTGGAGA	0.597													10	35					0	0	1	0	0
GPR55	9290	broad.mit.edu	37	2	231775087	231775087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:231775087C>T	uc002vrg.2	-	2	784	c.591G>A	c.(589-591)ATG>ATA	p.M197I	GPR55_uc002vrf.2_RNA|GPR55_uc010fxs.1_Missense_Mutation_p.M197I	NM_005683	NP_005674	Q9Y2T6	GPR55_HUMAN	G protein-coupled receptor 55	197	Helical; Name=5; (Potential).				activation of phospholipase C activity|bone resorption|negative regulation of osteoclast differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of Rho protein signal transduction	integral to plasma membrane	cannabinoid receptor activity			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;1.04e-11)|all cancers(144;4.22e-09)|LUSC - Lung squamous cell carcinoma(224;0.0119)|Lung(119;0.0145)		AGCAGAAGCCCATGATGCCCA	0.567													9	96					0	0	1	0	0
PTMA	5757	broad.mit.edu	37	2	232577545	232577546	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:232577545_232577546CC>TT	uc002vsc.3	+	5	502_503	c.320_321CC>TT	c.(319-321)ACC>ATT	p.T107I	PTMA_uc002vsb.3_Missense_Mutation_p.T106I|PTMA_uc010zmf.1_RNA|MIR1244_hsa-mir-1244-1|MI0006379_5'Flank	NM_001099285	NP_001092755	P06454	PTMA_HUMAN	prothymosin, alpha isoform 1	107					transcription, DNA-dependent	nucleus					0		Renal(207;0.0112)|all_hematologic(139;0.0315)|Acute lymphoblastic leukemia(138;0.0921)|all_lung(227;0.142)		Epithelial(121;1.75e-12)|BRCA - Breast invasive adenocarcinoma(100;0.00221)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0139)		AAGCAGAAGACCGACGAGGATG	0.495													3	6					0	0	1	0	0
ALPP	250	broad.mit.edu	37	2	233246386	233246386	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:233246386G>A	uc002vsq.2	+	11	1654	c.1489G>A	c.(1489-1491)GAC>AAC	p.D497N	ALPP_uc002vsr.2_RNA	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	497						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		CACCGCCTGCGACCTGGCGCC	0.746													6	33					0	0	1	0	0
ALPPL2	251	broad.mit.edu	37	2	233272346	233272346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:233272346G>A	uc002vss.3	+	4	396	c.343G>A	c.(343-345)GCC>ACC	p.A115T		NM_031313	NP_112603	P10696	PPBN_HUMAN	placental-like alkaline phosphatase	115					phosphorylation	anchored to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			skin(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)	Amifostine(DB01143)|Levamisole(DB00848)	TGGAGCCACAGCCACGGCCTA	0.577													6	30					0	0	1	0	0
ALPI	248	broad.mit.edu	37	2	233322730	233322730	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:233322730G>A	uc002vst.3	+	8	956	c.879G>A	c.(877-879)ACG>ACA	p.T293T	ALPI_uc002vsu.3_Silent_p.T204T	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	293					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CCGGAGACACGAAATATGAGA	0.622													8	36					0	0	1	0	0
ECEL1	9427	broad.mit.edu	37	2	233345515	233345515	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:233345515C>T	uc002vsv.2	-	16	2269	c.2064G>A	c.(2062-2064)CAG>CAA	p.Q688Q	ECEL1_uc010fya.1_Silent_p.Q686Q|ECEL1_uc010fyb.1_Silent_p.Q395Q	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	688	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GCACCCACTTCTGATAGGCCT	0.622													5	16					0	0	1	0	0
ECEL1	9427	broad.mit.edu	37	2	233349187	233349187	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:233349187G>A	uc002vsv.2	-	6	1384	c.1179C>T	c.(1177-1179)CCC>CCT	p.P393P	ECEL1_uc010fya.1_Silent_p.P393P|ECEL1_uc010fyb.1_Silent_p.P100P	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	393	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CATACCGGTGGGGTGTGGAGC	0.582													9	141					0	0	1	0	0
ECEL1	9427	broad.mit.edu	37	2	233349775	233349775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:233349775C>T	uc002vsv.2	-	4	1087	c.882G>A	c.(880-882)ATG>ATA	p.M294I	ECEL1_uc010fya.1_Missense_Mutation_p.M294I|ECEL1_uc010fyb.1_Missense_Mutation_p.M1I	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	294	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GCACTCGCTCCATGAACACCC	0.647													7	34					0	0	1	0	0
NEU2	4759	broad.mit.edu	37	2	233897394	233897394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:233897394C>T	uc010zmn.1	+	1	13	c.13C>T	c.(13-15)CCT>TCT	p.P5S		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	5							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		GGCGTCCCTTCCTGTCCTGCA	0.617													10	140					0	0	1	0	0
NEU2	4759	broad.mit.edu	37	2	233899067	233899067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:233899067G>A	uc010zmn.1	+	2	443	c.443G>A	c.(442-444)GGC>GAC	p.G148D		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	148							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		GCGGCCATCGGCCCAGCCTAC	0.667													4	29					0	0	1	0	0
NEU2	4759	broad.mit.edu	37	2	233899291	233899291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:233899291G>A	uc010zmn.1	+	2	667	c.667G>A	c.(667-669)GAA>AAA	p.E223K		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	223							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		CCAGGTGGCCGAAGTCGAGAC	0.652													8	35					0	0	1	0	0
NEU2	4759	broad.mit.edu	37	2	233899725	233899725	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:233899725C>T	uc010zmn.1	+	2	1101	c.1101C>T	c.(1099-1101)TTC>TTT	p.F367F		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	367							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		TTCTCATGTTCACCCTGAAGC	0.582													12	184					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	234072438	234072438	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234072438C>T	uc010zmo.1	+	11	1479	c.1326C>T	c.(1324-1326)ATC>ATT	p.I442I	INPP5D_uc010zmp.1_Silent_p.I441I	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	442					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CGGACTACATCCCCCATGACA	0.557													39	114					0	0	1	0	0
SAG	6295	broad.mit.edu	37	2	234255054	234255054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234255054G>A	uc002vuh.2	+	15	1496	c.1108G>A	c.(1108-1110)GAA>AAA	p.E370K	SAG_uc010zmq.1_Intron	NM_000541	NP_000532	P10523	ARRS_HUMAN	S-arrestin	370					rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway		protein phosphatase inhibitor activity			ovary(1)	1		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.018)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.054)		Epithelial(121;2.86e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00608)|Lung(119;0.00714)|GBM - Glioblastoma multiforme(43;0.207)		TACAGCTAAGGAAAGGTGAGT	0.443													8	164					0	0	1	0	0
USP40	55230	broad.mit.edu	37	2	234431968	234431968	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234431968G>A	uc010zmr.1	-	15	2082	c.2082C>T	c.(2080-2082)ATC>ATT	p.I694I	USP40_uc010zmt.1_Silent_p.I338I	NM_018218	NP_060688	Q9NVE5	UBP40_HUMAN	ubiquitin thioesterase 40	682					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)|breast(1)	3		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0539)		Epithelial(121;1.71e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000407)|Lung(119;0.00277)|LUSC - Lung squamous cell carcinoma(224;0.00646)		CACCTGCTGGGATTGCTAAGG	0.517													20	94					0	0	1	0	0
UGT1A10	54575	broad.mit.edu	37	2	234545533	234545533	+	Missense_Mutation	SNP	C	T	T	rs145610800		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234545533C>T	uc002vur.2	+	1	411	c.365C>T	c.(364-366)TCG>TTG	p.S122L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Missense_Mutation_p.S122L	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide	122					flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding			ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		TTATTTTTTTCGCATTGCAGG	0.363													4	37					0	0	1	0	0
UGT1A10	54575	broad.mit.edu	37	2	234545607	234545607	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234545607C>T	uc002vur.2	+	1	485	c.439C>T	c.(439-441)CTG>TTG	p.L147L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Silent_p.L147L	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide	147					flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding			ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		TGCAGTGTTTCTGGATCCTTT	0.388													9	55					0	0	1	0	0
UGT1A4	54657	broad.mit.edu	37	2	234627835	234627835	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234627835C>T	uc002vux.2	+	1	398	c.369C>T	c.(367-369)GCC>GCT	p.A123A	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Silent_p.A123A	NM_007120	NP_009051	P22310	UD14_HUMAN	UDP glycosyltransferase 1 family, polypeptide A4	123					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;3.49e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000504)|Lung(119;0.0026)|LUSC - Lung squamous cell carcinoma(224;0.00624)	Imipramine(DB00458)|Lamotrigine(DB00555)|Paricalcitol(DB00910)|Trifluoperazine(DB00831)	TATCTTTGGCCCTTCATAGGT	0.438													22	155					0	0	1	0	0
UGT1A3	54659	broad.mit.edu	37	2	234638183	234638183	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234638183G>A	uc002vuy.2	+	1	411	c.411G>A	c.(409-411)CTG>CTA	p.L137L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Silent_p.L137L	NM_019093	NP_061966	P35503	UD13_HUMAN	UDP glycosyltransferase 1 family, polypeptide A3	137					flavonoid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;2.4e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000476)|Lung(119;0.00243)|LUSC - Lung squamous cell carcinoma(224;0.00599)		ATGAGGCCCTGATCAGGCACC	0.433													9	163					0	0	1	0	0
HJURP	55355	broad.mit.edu	37	2	234750006	234750006	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234750006G>A	uc002vvg.2	-	8	1486	c.1420C>T	c.(1420-1422)CCT>TCT	p.P474S	HJURP_uc010znd.1_Missense_Mutation_p.P413S|HJURP_uc010zne.1_Missense_Mutation_p.P382S	NM_018410	NP_060880	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	474					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			ovary(1)	1		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		AGGCCACCAGGACTCGCAGGA	0.537													4	72					0	0	1	0	0
MSL3L2	151507	broad.mit.edu	37	2	234774931	234774931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234774931G>A	uc010znf.1	-	2	1149	c.911C>T	c.(910-912)TCC>TTC	p.S304F		NR_024322				SubName: Full=cDNA FLJ52683, highly similar to Male-specific lethal 3-like 1; SubName: Full=cDNA, FLJ79271, highly similar to Male-specific lethal 3-like 1; SubName: Full=HCG1642047;												0						CTCAGTAAAGGACATTTTTCC	0.438													7	46					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234847723	234847723	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234847723C>T	uc002vvh.2	+	5	470	c.430C>T	c.(430-432)CTG>TTG	p.L144L	TRPM8_uc010fyj.2_5'UTR|TRPM8_uc002vvi.3_Silent_p.L94L|TRPM8_uc002vvj.3_Silent_p.L67L	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	144	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	AACACCCAACCTGGTCATTTC	0.567													6	91					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234847758	234847758	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234847758C>T	uc002vvh.2	+	5	505	c.465C>T	c.(463-465)TTC>TTT	p.F155F	TRPM8_uc010fyj.2_5'UTR|TRPM8_uc002vvi.3_Silent_p.F105F|TRPM8_uc002vvj.3_Silent_p.F78F	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	155	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	CCAAGAACTTCGCCCTGAAGC	0.607													13	53					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234851302	234851302	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234851302G>A	uc002vvh.2	+	6	649	c.609G>A	c.(607-609)AGG>AGA	p.R203R	TRPM8_uc010fyj.2_5'UTR|TRPM8_uc002vvi.3_Silent_p.R153R|TRPM8_uc002vvj.3_Silent_p.R126R	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	203	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	CCATCAGCAGGAGTTCAGAGG	0.532													7	115					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234854510	234854510	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234854510T>C	uc002vvh.2	+	7	750	c.710T>C	c.(709-711)TTA>TCA	p.L237S	TRPM8_uc010fyj.2_5'UTR	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	237	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	GGCTATTTTTTAGCCCAGTAC	0.378													13	64					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234854546	234854546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234854546C>T	uc002vvh.2	+	7	786	c.746C>T	c.(745-747)CCA>CTA	p.P249L	TRPM8_uc010fyj.2_5'UTR	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	249	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	ACAAGAGATCCACTGTATATC	0.438													8	73					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234879000	234879000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234879000C>T	uc002vvh.2	+	17	2325	c.2285C>T	c.(2284-2286)TCG>TTG	p.S762L	TRPM8_uc010fyj.2_Intron	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	762	Helical; Name=3; (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	GATTTCCATTCGGTGCCACAC	0.567													70	294					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234905099	234905099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:234905099G>A	uc002vvh.2	+	22	3109	c.3069G>A	c.(3067-3069)ATG>ATA	p.M1023I	TRPM8_uc010fyj.2_Missense_Mutation_p.M601I|TRPM8_uc010fyk.2_RNA	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	1023	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	ACTTCTACATGGTGGTGAAGA	0.493													14	83					0	0	1	0	0
IQCA1	79781	broad.mit.edu	37	2	237308122	237308122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:237308122C>T	uc002vvz.1	-	9	1326	c.1144G>A	c.(1144-1146)GAA>AAA	p.E382K	IQCA1_uc002vwb.2_Missense_Mutation_p.E389K|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.E341K	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	382	Lys-rich.						ATP binding			ovary(1)	1						TTCCATTTTTCGTCTTCTTCC	0.458													23	89					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238245121	238245121	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:238245121C>T	uc002vwl.2	-	40	8907	c.8622G>A	c.(8620-8622)ACG>ACA	p.T2874T	COL6A3_uc002vwo.2_Silent_p.T2668T|COL6A3_uc010znj.1_Silent_p.T2267T|COL6A3_uc002vwj.2_Silent_p.T255T	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2874	Nonhelical region.|Thr-rich.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TCACCGGCTTCGTTGTCGTCA	0.433													15	133					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238277299	238277299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:238277299G>A	uc002vwl.2	-	10	5092	c.4807C>T	c.(4807-4809)CCC>TCC	p.P1603S	COL6A3_uc002vwo.2_Missense_Mutation_p.P1397S|COL6A3_uc010znj.1_Missense_Mutation_p.P996S	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1603	VWFA 8.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TCTATGTTGGGAAGCTCTCTG	0.552													21	122					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238285469	238285469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:238285469G>A	uc002vwl.2	-	7	3301	c.3016C>T	c.(3016-3018)CAT>TAT	p.H1006Y	COL6A3_uc002vwo.2_Missense_Mutation_p.H800Y|COL6A3_uc010znj.1_Missense_Mutation_p.H399Y|COL6A3_uc002vwq.2_Missense_Mutation_p.H800Y|COL6A3_uc002vwr.2_Missense_Mutation_p.H599Y|COL6A3_uc010znk.1_Missense_Mutation_p.H806Y	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1006	Nonhelical region.|VWFA 5.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		ATCTGTGGATGAAGATCTCCA	0.493													26	251					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238285572	238285572	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:238285572G>A	uc002vwl.2	-	7	3198	c.2913C>T	c.(2911-2913)TTC>TTT	p.F971F	COL6A3_uc002vwo.2_Silent_p.F765F|COL6A3_uc010znj.1_Silent_p.F364F|COL6A3_uc002vwq.2_Silent_p.F765F|COL6A3_uc002vwr.2_Silent_p.F564F|COL6A3_uc010znk.1_Silent_p.F771F	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	971	Nonhelical region.|VWFA 5.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CTTGGAAGATGAAAGGCACAA	0.547													18	101					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238287632	238287632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:238287632G>A	uc002vwl.2	-	6	2429	c.2144C>T	c.(2143-2145)TCG>TTG	p.S715L	COL6A3_uc002vwo.2_Missense_Mutation_p.S509L|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Missense_Mutation_p.S509L|COL6A3_uc002vwr.2_Missense_Mutation_p.S308L|COL6A3_uc010znk.1_Intron	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	715	VWFA 4.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GTTCAGGCCCGAACCTCCCTG	0.537													6	32					0	0	1	0	0
PRLH	51052	broad.mit.edu	37	2	238475779	238475779	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:238475779C>T	uc010znl.1	+	2	225	c.225C>T	c.(223-225)TTC>TTT	p.F75F		NM_015893	NP_056977	P81277	PRRP_HUMAN	prolactin releasing hormone precursor	75						extracellular region					0		Lung NSC(271;0.142)|all_lung(227;0.175)		Epithelial(121;8.28e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.03e-10)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.19e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000329)|Lung(119;0.0106)|LUSC - Lung squamous cell carcinoma(224;0.0249)		TGACCTGCTTCCCCCTGGAAG	0.672													4	40					0	0	1	0	0
ESPNL	339768	broad.mit.edu	37	2	239036292	239036292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:239036292C>T	uc002vxq.3	+	7	1242	c.1132C>T	c.(1132-1134)CAT>TAT	p.H378Y	ESPNL_uc010fyw.2_Missense_Mutation_p.H74Y	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	378	Pro-rich.									pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		CTGGCCTGGCCATCCTGACCA	0.657													7	24					0	0	1	0	0
PER2	8864	broad.mit.edu	37	2	239161929	239161929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:239161929G>A	uc002vyc.2	-	19	2972	c.2735C>T	c.(2734-2736)TCC>TTC	p.S912F	PER2_uc010znv.1_Missense_Mutation_p.S912F	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	912	Pro-rich.				circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		CGAGGGGAAGGAATAACTGGG	0.627													24	72					0	0	1	0	0
PER2	8864	broad.mit.edu	37	2	239169517	239169517	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:239169517G>A	uc002vyc.2	-	13	1731	c.1494C>T	c.(1492-1494)ACC>ACT	p.T498T	PER2_uc010znv.1_Silent_p.T498T	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	498					circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		CGCTGGAGGAGGTCTGGCTCA	0.622													32	210					0	0	1	0	0
HDAC4	9759	broad.mit.edu	37	2	239990269	239990269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:239990269G>A	uc002vyk.3	-	23	3562	c.2770C>T	c.(2770-2772)CCG>TCG	p.P924S	HDAC4_uc010fyy.2_Missense_Mutation_p.P881S	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	924	Histone deacetylase.				B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		ACCACATCCGGGGCAAACTCG	0.602													4	54					0	0	1	0	0
PRR21	643905	broad.mit.edu	37	2	240981419	240981419	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:240981419G>A	uc010zod.1	-	1	981	c.981C>T	c.(979-981)TCC>TCT	p.S327S		NM_001080835	NP_001074304	Q8WXC7	PRR21_HUMAN	proline rich 21	327										ovary(1)|skin(1)	2						GAAGAGACGTGGATGAAGAGG	0.592													10	154					0	0	1	0	0
OR6B3	150681	broad.mit.edu	37	2	240985280	240985280	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:240985280C>T	uc010zoe.1	-	1	210	c.210G>A	c.(208-210)GAG>GAA	p.E70E	PRR21_uc010zod.1_5'Flank	NM_173351	NP_775486	Q8NGW1	OR6B3_HUMAN	olfactory receptor, family 6, subfamily B,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;1.05e-29)|all cancers(36;3.52e-28)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		CGTACCAGATCTCTAGGAAAG	0.552													7	128					0	0	1	0	0
OR6B3	150681	broad.mit.edu	37	2	240985384	240985384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:240985384G>A	uc010zoe.1	-	1	106	c.106C>T	c.(106-108)CTC>TTC	p.L36F	PRR21_uc010zod.1_5'Flank	NM_173351	NP_775486	Q8NGW1	OR6B3_HUMAN	olfactory receptor, family 6, subfamily B,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;1.05e-29)|all cancers(36;3.52e-28)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		AGGACAAAGAGGTAGGTGAGC	0.592													10	97					0	0	1	0	0
GPC1	2817	broad.mit.edu	37	2	241402767	241402767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:241402767C>T	uc002vyw.3	+	4	942	c.721C>T	c.(721-723)CCC>TCC	p.P241S		NM_002081	NP_002072	P35052	GPC1_HUMAN	glypican 1 precursor	241					axon guidance	anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;4.51e-33)|all cancers(36;1.74e-30)|OV - Ovarian serous cystadenocarcinoma(60;4.73e-15)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;9.1e-06)|Colorectal(34;0.000487)|Lung(119;0.0013)|LUSC - Lung squamous cell carcinoma(224;0.0154)|COAD - Colon adenocarcinoma(134;0.0194)|READ - Rectum adenocarcinoma(96;0.0949)		TCCCCAGGTCCCCCTGGGCCC	0.697													21	112					0	0	1	0	0
ANKMY1	51281	broad.mit.edu	37	2	241463769	241463769	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:241463769G>A	uc002vyz.1	-	7	1327	c.1098C>T	c.(1096-1098)ATC>ATT	p.I366I	ANKMY1_uc002vza.1_Silent_p.I225I|ANKMY1_uc010fzd.1_Silent_p.I455I|ANKMY1_uc002vzb.1_Silent_p.I225I|ANKMY1_uc002vzc.1_Silent_p.I225I|ANKMY1_uc002vzd.1_Silent_p.I225I|ANKMY1_uc010fze.1_Silent_p.I35I|ANKMY1_uc002vze.2_Silent_p.I127I	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	366							zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		ATGATGAAAGGATTGGAACAA	0.448													6	49					0	0	1	0	0
RNPEPL1	57140	broad.mit.edu	37	2	241516008	241516008	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:241516008C>T	uc002vzi.2	+	9	1467	c.874C>T	c.(874-876)CTG>TTG	p.L292L	RNPEPL1_uc010fzf.2_Silent_p.L198L|RNPEPL1_uc002vzj.2_5'UTR	NM_018226	NP_060696	Q9HAU8	RNPL1_HUMAN	arginyl aminopeptidase (aminopeptidase B)-like	292					leukotriene biosynthetic process|proteolysis		aminopeptidase activity|metallopeptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2		all_epithelial(40;1.13e-11)|Breast(86;0.000169)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.204)|Melanoma(123;0.238)		Epithelial(32;3.05e-31)|all cancers(36;8.2e-29)|OV - Ovarian serous cystadenocarcinoma(60;8.55e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.12e-06)|Lung(119;0.00168)|Colorectal(34;0.005)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.0322)		TGAGCCGGACCTGTCTCAGGG	0.667													10	45					0	0	1	0	0
KIF1A	547	broad.mit.edu	37	2	241659326	241659326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:241659326G>A	uc002vzy.2	-	44	4729	c.4583C>T	c.(4582-4584)TCC>TTC	p.S1528F	KIF1A_uc010fzk.2_Missense_Mutation_p.S1629F|KIF1A_uc002vzw.2_Missense_Mutation_p.S189F|KIF1A_uc002vzx.2_Missense_Mutation_p.S255F	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1528					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		GGCTGGCCGGGAGCAGGGCTG	0.701													17	70					0	0	1	0	0
AGXT	189	broad.mit.edu	37	2	241814562	241814562	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:241814562C>T	uc002waa.3	+	7	838	c.717C>T	c.(715-717)TCC>TCT	p.S239S	AGXT_uc002wab.3_5'Flank	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	239					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	AGCCCTTCTCCTTCTACCTGG	0.602													8	62					0	0	1	0	0
C2orf54	79919	broad.mit.edu	37	2	241827960	241827960	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:241827960T>A	uc002wae.3	-	4	1159	c.1000A>T	c.(1000-1002)ACG>TCG	p.T334S	C2orf54_uc002wac.2_Missense_Mutation_p.T166S|C2orf54_uc002wad.2_Missense_Mutation_p.T185S	NM_001085437	NP_001078906	Q08AI8	CB054_HUMAN	hypothetical protein LOC79919 isoform 1	334											0		all_epithelial(40;3.99e-16)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)		AGCTTCCGCGTGGCCAGGCAA	0.692													3	19					0	0	1	0	0
C2orf54	79919	broad.mit.edu	37	2	241835106	241835106	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:241835106C>T	uc002wae.3	-	1	468	c.309G>A	c.(307-309)GAG>GAA	p.E103E		NM_001085437	NP_001078906	Q08AI8	CB054_HUMAN	hypothetical protein LOC79919 isoform 1	103											0		all_epithelial(40;3.99e-16)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)		CAAGGCCATCCTCCGGCTGGG	0.642													7	37					0	0	1	0	0
SNED1	25992	broad.mit.edu	37	2	241973219	241973219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:241973219C>T	uc002wah.1	+	3	569	c.569C>T	c.(568-570)TCC>TTC	p.S190F		NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	190	NIDO.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		AACTATGAGTCCATCGTGTGG	0.632													3	22					0	0	1	0	0
SNED1	25992	broad.mit.edu	37	2	241976243	241976243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:241976243G>A	uc002wah.1	+	5	842	c.842G>A	c.(841-843)GGC>GAC	p.G281D		NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	281	EGF-like 1.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		TGCCTCAACGGCGGCAAGTGC	0.692													11	58					0	0	1	0	0
SNED1	25992	broad.mit.edu	37	2	241992590	241992590	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:241992590G>A	uc002wah.1	+	16	2104	c.2104G>A	c.(2104-2106)GAG>AAG	p.E702K		NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	702	Sushi.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		CGGCCCCCCGGAGGAGGTGAA	0.716													5	25					0	0	1	0	0
SNED1	25992	broad.mit.edu	37	2	242004955	242004955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:242004955G>A	uc002wah.1	+	21	2954	c.2954G>A	c.(2953-2955)CGA>CAA	p.R985Q	SNED1_uc002wai.1_Missense_Mutation_p.R220Q|SNED1_uc002waj.1_Missense_Mutation_p.R72Q|SNED1_uc002wak.2_Missense_Mutation_p.R72Q	NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	985	Fibronectin type-III 1.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		TCAGTGAAGCGAAACAGTAAC	0.657													4	41					0	0	1	0	0
PASK	23178	broad.mit.edu	37	2	242051690	242051690	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:242051690G>A	uc002wao.1	-	15	3590	c.3498C>T	c.(3496-3498)ATC>ATT	p.I1166I	PASK_uc010zol.1_Silent_p.I980I|PASK_uc010zom.1_Silent_p.I1131I|PASK_uc010fzl.1_Silent_p.I1173I|PASK_uc010zon.1_Silent_p.I947I	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	1166	Protein kinase.				regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		CACAGTACTCGATGGTCCCAC	0.537													8	32					0	0	1	0	0
PASK	23178	broad.mit.edu	37	2	242082329	242082329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:242082329G>A	uc002wao.1	-	2	211	c.119C>T	c.(118-120)TCG>TTG	p.S40L	PASK_uc010zol.1_5'UTR|PASK_uc010zom.1_Missense_Mutation_p.S40L|PASK_uc010fzl.1_Missense_Mutation_p.S40L|PASK_uc010zon.1_Intron|PASK_uc002waq.2_Missense_Mutation_p.S40L	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	40					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		TGAGGAAAACGACCTGCTGGG	0.587													10	44					0	0	1	0	0
THAP4	51078	broad.mit.edu	37	2	242572423	242572423	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:242572423G>A	uc002wbt.2	-	2	1372	c.1149C>T	c.(1147-1149)TCC>TCT	p.S383S		NM_015963	NP_057047	Q8WY91	THAP4_HUMAN	THAP domain containing 4 isoform 1	383							DNA binding|metal ion binding				0		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;2.3e-33)|all cancers(36;8.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.68e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0844)		CCTGGCTGTCGGAGCGGCTGA	0.637													4	32					0	0	1	0	0
D2HGDH	728294	broad.mit.edu	37	2	242689687	242689687	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:242689687C>T	uc002wce.1	+	7	1148	c.975C>T	c.(973-975)CTC>CTT	p.L325L	D2HGDH_uc010zpc.1_RNA|D2HGDH_uc010fzq.1_Silent_p.L191L|D2HGDH_uc002wcg.1_Intron|D2HGDH_uc002wch.2_RNA|D2HGDH_uc002wci.2_Silent_p.L24L	NM_152783	NP_689996	Q8N465	D2HDH_HUMAN	D-2-hydroxyglutarate dehydrogenase precursor	325					2-oxoglutarate metabolic process|cellular protein metabolic process|response to cobalt ion|response to manganese ion|response to zinc ion	mitochondrial matrix	(R)-2-hydroxyglutarate dehydrogenase activity|flavin adenine dinucleotide binding|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		GGCGCCATCTCCACCTGGCCA	0.617													13	107					0	0	1	0	0
NEU4	129807	broad.mit.edu	37	2	242757513	242757513	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:242757513C>T	uc010fzr.2	+	4	680	c.594C>T	c.(592-594)TTC>TTT	p.F198F	NEU4_uc002wcl.2_RNA|NEU4_uc002wcm.2_Silent_p.F198F|NEU4_uc002wcn.1_Silent_p.F210F|NEU4_uc002wco.1_Silent_p.F198F|NEU4_uc002wcp.1_Silent_p.F210F	NM_080741	NP_542779	Q8WWR8	NEUR4_HUMAN	sialidase 4	198						lysosomal lumen|organelle inner membrane	exo-alpha-sialidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0825)		CTCACTCCTTCGCCTTCTACA	0.687													4	23					0	0	1	0	0
PDCD1	5133	broad.mit.edu	37	2	242793446	242793446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:242793446C>T	uc002wcq.3	-	5	699	c.631G>A	c.(631-633)GAG>AAG	p.E211K	PDCD1_uc010fzs.2_Missense_Mutation_p.E90K|PDCD1_uc010fzt.2_RNA	NM_005018	NP_005009	Q15116	PDCD1_HUMAN	programmed cell death 1 precursor	211	Cytoplasmic (Potential).				apoptosis|humoral immune response|multicellular organismal development|T cell costimulation	integral to membrane	protein tyrosine phosphatase activity|signal transducer activity			ovary(1)	1		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0219)		GAGGGGTCCTCCTTCTTTGAG	0.657													7	35					0	0	1	0	0
C2orf85	285093	broad.mit.edu	37	2	242814281	242814281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr2:242814281G>A	uc010fzu.1	+	2	597	c.574G>A	c.(574-576)GGC>AGC	p.G192S		NM_173821	NP_776182	Q14D33	CB085_HUMAN	hypothetical protein LOC285093	192						integral to membrane				ovary(1)	1						GTCCACCCCTGGCGACGACCT	0.677													6	24					0	0	1	0	0
DEFB132	400830	broad.mit.edu	37	20	239757	239757	+	Missense_Mutation	SNP	G	A	A	rs145729689	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:239757G>A	uc002wdb.2	+	2	141	c.98G>A	c.(97-99)GGA>GAA	p.G33E		NM_207469	NP_997352	Q7Z7B7	DB132_HUMAN	beta-defensin 32 precursor	33					defense response to bacterium	extracellular region					0						AACACCCCAGGATACTGCAGG	0.522													11	34					0	0	1	0	0
TRIB3	57761	broad.mit.edu	37	20	368793	368793	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:368793C>T	uc002wdm.2	+	2	645	c.139C>T	c.(139-141)CTG>TTG	p.L47L	TRIB3_uc002wdn.2_Silent_p.L74L	NM_021158	NP_066981	Q96RU7	TRIB3_HUMAN	tribbles 3	47					apoptosis|cellular lipid metabolic process|insulin receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fatty acid biosynthetic process|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of protein binding|positive regulation of ubiquitin-protein ligase activity|regulation of glucose transport|regulation of MAP kinase activity|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	ATP binding|protein kinase activity|protein kinase binding|protein kinase inhibitor activity|transcription corepressor activity|ubiquitin protein ligase binding|ubiquitin-protein ligase regulator activity			central_nervous_system(2)	2		all_epithelial(17;0.165)|Lung NSC(37;0.191)|Breast(17;0.231)		Colorectal(46;0.101)|COAD - Colon adenocarcinoma(99;0.112)		GCCCCCCTGCCTGTTGCCCCT	0.637													16	73					0	0	1	0	0
FKBP1A	2280	broad.mit.edu	37	20	1298913	1298913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:1298913G>A	uc010gac.2	-	5	552	c.274C>T	c.(274-276)CCC>TCC	p.P92S	SDCBP2_uc002wev.3_Intron|SDCBP2_uc010zpq.1_Intron			P62942	FKB1A_HUMAN	Homo sapiens FKBP12-Exip2 mRNA for FK506 binding protein12, complete cds.	Error:Variant_position_missing_in_P62942_after_alignment					'de novo' protein folding|beta-amyloid formation|fibril organization|heart trabecula formation|negative regulation of protein phosphatase type 2B activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of protein binding|positive regulation of protein ubiquitination|protein maturation by protein folding|protein refolding|regulation of activin receptor signaling pathway|regulation of immune response|regulation of ryanodine-sensitive calcium-release channel activity|SMAD protein complex assembly|T cell activation|ventricular cardiac muscle tissue morphogenesis	axon|cytosol|sarcoplasmic reticulum membrane|terminal cisterna	activin binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity|signal transducer activity|SMAD binding|type I transforming growth factor beta receptor binding				0					Pimecrolimus(DB00337)|Sirolimus(DB00877)|Tacrolimus(DB00864)	AGGAAAAAGGGAGGATTGGGA	0.552													6	24					0	0	1	0	0
SIRPD	128646	broad.mit.edu	37	20	1517864	1517864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:1517864C>T	uc002wfi.2	-	3	558	c.514G>A	c.(514-516)GAG>AAG	p.E172K		NM_178460	NP_848555	Q9H106	SIRPD_HUMAN	signal-regulatory protein delta precursor	172						extracellular region				ovary(1)|kidney(1)|skin(1)	3						CTGTTTCTCTCAGGCAGGGCC	0.602													7	73					0	0	1	0	0
SIRPG	55423	broad.mit.edu	37	20	1616172	1616172	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:1616172C>T	uc002wfm.1	-	4	887	c.822G>A	c.(820-822)AGG>AGA	p.R274R	SIRPG_uc002wfn.1_Intron|SIRPG_uc002wfo.1_Intron|uc002wfp.1_Intron	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	274	Extracellular (Potential).|Ig-like C1-type 2.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						GGTAGAACTTCCTCACCTGGC	0.547													11	91					0	0	1	0	0
PDYN	5173	broad.mit.edu	37	20	1961236	1961236	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:1961236C>T	uc010gaj.2	-	3	740	c.498G>A	c.(496-498)GAG>GAA	p.E166E	uc002wfu.1_Intron|PDYN_uc002wfv.2_Silent_p.E166E|PDYN_uc010zpt.1_Silent_p.E11E	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	166					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						CCTTGGGGTCCTCCTCAGCGA	0.597													6	68					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2290335	2290335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:2290335G>A	uc002wfx.3	+	2	137	c.40G>A	c.(40-42)GCC>ACC	p.A14T		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	14					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	CTGGCAGACGGCCTTCAACCG	0.527													9	59					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2321186	2321186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:2321186C>T	uc002wfx.3	+	13	2138	c.2041C>T	c.(2041-2043)CCT>TCT	p.P681S		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	681					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	CAACAAGTTCCCTGCAATCAA	0.592													10	56					0	0	1	0	0
TGM6	343641	broad.mit.edu	37	20	2384451	2384451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:2384451C>T	uc002wfy.1	+	9	1379	c.1318C>T	c.(1318-1320)CTC>TTC	p.L440F	TGM6_uc010gal.1_Missense_Mutation_p.L440F	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	440					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	CATCACTGACCTCTACAAGTA	0.592													6	79					0	0	1	0	0
TMC2	117532	broad.mit.edu	37	20	2573039	2573039	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:2573039C>T	uc002wgf.1	+	8	933	c.918C>T	c.(916-918)GTC>GTT	p.V306V	TMC2_uc002wgg.1_Silent_p.V290V|TMC2_uc010zpw.1_Silent_p.V138V|TMC2_uc010zpx.1_Silent_p.V137V	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	306	Extracellular (Potential).					integral to membrane				ovary(3)	3						ATTTTTCTGTCCTTTGGGATT	0.418													7	52					0	0	1	0	0
TMC2	117532	broad.mit.edu	37	20	2592920	2592920	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:2592920C>A	uc002wgf.1	+	13	1692	c.1677C>A	c.(1675-1677)GTC>GTA	p.V559V	TMC2_uc002wgg.1_Silent_p.V543V|TMC2_uc010zpw.1_Silent_p.V391V|TMC2_uc010zpx.1_Silent_p.V390V	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	559	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						ACGAGAGTGTCCCCCGACCAC	0.493													6	47					8.12818e-05	8.21659e-05	1	1	0
FAM113A	64773	broad.mit.edu	37	20	2816862	2816862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:2816862G>A	uc002wgz.1	-	7	1437	c.940C>T	c.(940-942)CCA>TCA	p.P314S	FAM113A_uc002whb.1_Missense_Mutation_p.P165S|FAM113A_uc002wha.1_Missense_Mutation_p.P165S|FAM113A_uc010zqa.1_Missense_Mutation_p.P161S|FAM113A_uc002whc.1_Missense_Mutation_p.P263S	NM_022760	NP_073597	Q9H1Q7	F113A_HUMAN	hypothetical protein LOC64773	314	Poly-Pro.						hydrolase activity|protein binding			ovary(2)	2						gaagaaggtgggggtgggagc	0.279													5	94					0	0	1	0	0
PTPRA	5786	broad.mit.edu	37	20	3002852	3002852	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:3002852C>T	uc010zqd.1	+	14	1664	c.1347C>T	c.(1345-1347)ATC>ATT	p.I449I	PTPRA_uc002whj.2_Silent_p.I438I|PTPRA_uc002whk.2_Silent_p.I429I|PTPRA_uc002whl.2_Silent_p.I429I|PTPRA_uc002whm.2_Silent_p.I205I|PTPRA_uc002whn.2_Silent_p.I429I|PTPRA_uc002who.2_Silent_p.I101I	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A	438	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						CAGGGGCCATCGTGGTCCACT	0.602													6	107					0	0	1	0	0
PTPRA	5786	broad.mit.edu	37	20	3003365	3003365	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:3003365C>T	uc010zqd.1	+	15	1709	c.1392C>T	c.(1390-1392)GTC>GTT	p.V464V	PTPRA_uc002whj.2_Silent_p.V453V|PTPRA_uc002whk.2_Silent_p.V444V|PTPRA_uc002whl.2_Silent_p.V444V|PTPRA_uc002whm.2_Silent_p.V220V|PTPRA_uc002whn.2_Silent_p.V444V|PTPRA_uc002who.2_Silent_p.V116V	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A	453	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						GTACCTTTGTCGTCATTGATG	0.572													10	62					0	0	1	0	0
FASTKD5	60493	broad.mit.edu	37	20	3128843	3128843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:3128843G>A	uc002whz.2	-	2	1185	c.874C>T	c.(874-876)CGT>TGT	p.R292C	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	292					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						GATACCTGACGATTTTCACCT	0.343													12	69					0	0	1	0	0
ATRN	8455	broad.mit.edu	37	20	3543884	3543884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:3543884C>T	uc002wim.2	+	10	1750	c.1660C>T	c.(1660-1662)CGT>TGT	p.R554C	ATRN_uc002wil.2_Missense_Mutation_p.R554C	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	554	Extracellular (Potential).|Kelch 4.				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						CCGATTTTTCCGTTACTTGCA	0.378													10	44					0	0	1	0	0
ATRN	8455	broad.mit.edu	37	20	3557545	3557545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:3557545C>T	uc002wim.2	+	14	2344	c.2254C>T	c.(2254-2256)CCC>TCC	p.P752S	ATRN_uc002wil.2_Missense_Mutation_p.P752S	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	752	Extracellular (Potential).				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						CAAGGATAACCCCATGTACTA	0.502													4	45					0	0	1	0	0
HSPA12B	116835	broad.mit.edu	37	20	3722937	3722937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:3722937G>A	uc002wjd.2	+	4	251	c.148G>A	c.(148-150)GAG>AAG	p.E50K	HSPA12B_uc010zqi.1_Missense_Mutation_p.E50K|HSPA12B_uc002wje.2_5'UTR|HSPA12B_uc010zqj.1_Intron	NM_052970	NP_443202	Q96MM6	HS12B_HUMAN	heat shock 70kD protein 12B	50							ATP binding				0						GCAGAAACCCGAGGTCCGAGC	0.587													5	49					0	0	1	0	0
PROKR2	128674	broad.mit.edu	37	20	5294866	5294866	+	Silent	SNP	G	A	A	rs149123899	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:5294866G>A	uc010zqw.1	-	1	150	c.150C>T	c.(148-150)TTC>TTT	p.F50F	PROKR2_uc010zqx.1_Silent_p.F50F|PROKR2_uc010zqy.1_Silent_p.F50F|uc002wly.1_5'Flank	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	50	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						TCTTGGCTGCGAAGAAGGTCC	0.517										HNSCC(71;0.22)			6	90					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5897495	5897495	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:5897495C>T	uc002wmg.2	+	3	426	c.120C>T	c.(118-120)GTC>GTT	p.V40V	CHGB_uc010zqz.1_5'UTR	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	40						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						TCATTGAGGTCCTCTCAAATG	0.562													5	68					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5897526	5897526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:5897526C>T	uc002wmg.2	+	3	457	c.151C>T	c.(151-153)CCA>TCA	p.P51S	CHGB_uc010zqz.1_5'UTR	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	51						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						GTCCAGCGCTCCACCCATCAC	0.562													5	53					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5904114	5904114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:5904114G>A	uc002wmg.2	+	4	1630	c.1324G>A	c.(1324-1326)GGT>AGT	p.G442S	CHGB_uc010zqz.1_Missense_Mutation_p.G125S	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	442						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						AAGGTTCTTGGGTGAAGGACA	0.547													4	87					0	0	1	0	0
LRRN4	164312	broad.mit.edu	37	20	6021700	6021700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:6021700C>T	uc002wmo.2	-	5	2415	c.2191G>A	c.(2191-2193)GAT>AAT	p.D731N		NM_152611	NP_689824	Q8WUT4	LRRN4_HUMAN	leucine rich repeat neuronal 4 precursor	731	Cytoplasmic (Potential).					integral to membrane				skin(3)	3						AGCGGGTAATCATCAAAGGCC	0.607													9	36					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8862439	8862439	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:8862439C>A	uc002wnb.2	+	32	3597	c.3594C>A	c.(3592-3594)CCC>CCA	p.P1198P	PLCB1_uc002wna.2_3'UTR	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	1198					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						ACAAGACTCCCTCCAGTGAGG	0.527													6	17					0.0215528	0.0217116	1	1	0
PLCB4	5332	broad.mit.edu	37	20	9388636	9388636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:9388636C>T	uc002wnf.2	+	20	1820	c.1684C>T	c.(1684-1686)CAT>TAT	p.H562Y	PLCB4_uc010gbw.1_Missense_Mutation_p.H562Y|PLCB4_uc010gbx.2_Missense_Mutation_p.H574Y|PLCB4_uc002wne.2_Missense_Mutation_p.H562Y|PLCB4_uc002wnh.2_Missense_Mutation_p.H409Y	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	562					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CACTAATATCCATCCATATTT	0.428													12	51					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9400482	9400482	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:9400482C>G	uc002wnf.2	+	24	2180	c.2044C>G	c.(2044-2046)CGG>GGG	p.R682G	PLCB4_uc010gbw.1_Missense_Mutation_p.R682G|PLCB4_uc010gbx.2_Missense_Mutation_p.R694G|PLCB4_uc002wne.2_Missense_Mutation_p.R682G|PLCB4_uc002wnh.2_Missense_Mutation_p.R529G	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	682					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TTTCATGAGGCGGCCTGATCG	0.438													5	69					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9434098	9434098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:9434098G>A	uc002wnf.2	+	31	3085	c.2949G>A	c.(2947-2949)ATG>ATA	p.M983I	PLCB4_uc010gbw.1_Missense_Mutation_p.M983I|PLCB4_uc010gbx.2_Missense_Mutation_p.M995I|PLCB4_uc002wne.2_Missense_Mutation_p.M983I|PLCB4_uc002wnh.2_Missense_Mutation_p.M830I	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	983					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AGAAGGCAATGAAGAAGAAGG	0.388													4	7					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9523344	9523344	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:9523344G>A	uc002wnl.2	-	10	2438	c.1893C>T	c.(1891-1893)ATC>ATT	p.I631I	PAK7_uc002wnk.2_Silent_p.I631I|PAK7_uc002wnj.2_Silent_p.I631I|PAK7_uc010gby.1_Intron	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	631	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CTATCACCATGATCCCGAGGG	0.522													6	42					0	0	1	0	0
SPTLC3	55304	broad.mit.edu	37	20	13107246	13107246	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:13107246G>A	uc002wod.1	+	9	1450	c.1161G>A	c.(1159-1161)GTG>GTA	p.V387V		NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	387					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	AGGACCTCGTGGATTATTTAC	0.433													6	94					0	0	1	0	0
SEL1L2	80343	broad.mit.edu	37	20	13858217	13858217	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:13858217G>T	uc010gcf.2	-	11	1057	c.975C>A	c.(973-975)TTC>TTA	p.F325L	SEL1L2_uc002woq.3_Missense_Mutation_p.F186L|SEL1L2_uc010zrl.1_Missense_Mutation_p.F325L|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	325	Extracellular (Potential).|Sel1-like 5.					integral to membrane	binding			ovary(2)	2						CTGCCTTTAAGAAGTAGTGTA	0.338													5	30					3.59834e-05	3.63958e-05	1	1	0
KIF16B	55614	broad.mit.edu	37	20	16253978	16253978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:16253978G>A	uc002wpg.1	-	26	4032	c.3874C>T	c.(3874-3876)CTC>TTC	p.L1292F	KIF16B_uc002wpe.1_Missense_Mutation_p.L644F|KIF16B_uc002wpf.1_Missense_Mutation_p.L633F|KIF16B_uc010gch.1_Missense_Mutation_p.L1241F	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	1292	PX.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						TGTTTCGAGAGAGTCAGTCCC	0.488													5	72					0	0	1	0	0
BANF2	140836	broad.mit.edu	37	20	17716310	17716310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:17716310G>A	uc002wpz.2	+	4	401	c.127G>A	c.(127-129)GCC>ACC	p.A43T	BANF2_uc010zrs.1_Missense_Mutation_p.A50T|BANF2_uc002wqa.2_Missense_Mutation_p.A43T	NM_178477	NP_848572	Q9H503	BAFL_HUMAN	barrier to autointegration factor 2 isoform 1	43						cytoplasm|nucleus	DNA binding			skin(1)	1						CCCTCCCCAGGCCTACATCCT	0.537													18	64					0	0	1	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18125937	18125937	+	Missense_Mutation	SNP	C	T	T	rs137920496		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:18125937C>T	uc002wqj.2	+	3	942	c.320C>T	c.(319-321)TCG>TTG	p.S107L	CSRP2BP_uc002wqk.2_5'UTR	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	107					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						TTTACTTGTTCGGATTGCTCA	0.448													5	119					0	0	1	0	0
SLC24A3	57419	broad.mit.edu	37	20	19496170	19496170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:19496170G>A	uc002wrl.2	+	3	507	c.310G>A	c.(310-312)GAT>AAT	p.D104N		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	104	Extracellular (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						CACAAACGAGGATAGAAGACA	0.527													4	91					0	0	1	0	0
RIN2	54453	broad.mit.edu	37	20	19977361	19977361	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:19977361C>T	uc002wro.1	+	10	2275	c.2239C>T	c.(2239-2241)CTG>TTG	p.L747L	RIN2_uc010gcu.1_Silent_p.L314L|RIN2_uc010gcv.1_Silent_p.L541L	NM_018993	NP_061866	Q8WYP3	RIN2_HUMAN	Ras and Rab interactor 2	747	VPS9.				endocytosis|small GTPase mediated signal transduction	cytoplasm	GTPase activator activity|Rab guanyl-nucleotide exchange factor activity			lung(4)|ovary(1)	5						AGCACTTTCTCTGATAAAGAA	0.522													5	29					0	0	1	0	0
CRNKL1	51340	broad.mit.edu	37	20	20033115	20033116	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:20033115_20033116GG>AA	uc002wrs.2	-	2	386_387	c.354_355CC>TT	c.(352-357)GTCCTG>GTTTTG	p.118_119VL>VL	C20orf26_uc010gcw.1_5'Flank|C20orf26_uc010zse.1_5'Flank|C20orf26_uc002wru.2_5'Flank|CRNKL1_uc002wrt.1_Silent_p.106_107VL>VL	NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	118_119					spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						GGAACTTGCAGGACTGACCTTT	0.609													12	62					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20269273	20269273	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:20269273G>A	uc002wru.2	+	23	2893	c.2817G>A	c.(2815-2817)GAG>GAA	p.E939E	C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	939										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		GCTTCTGTGAGAAGAATGTGG	0.403													14	87					0	0	1	0	0
PAX1	5075	broad.mit.edu	37	20	21687649	21687649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:21687649C>T	uc002wsj.2	+	2	914	c.860C>T	c.(859-861)CCC>CTC	p.P287L	PAX1_uc010zsl.1_Missense_Mutation_p.P287L|PAX1_uc010zsm.1_Missense_Mutation_p.P263L	NM_006192	NP_006183	P15863	PAX1_HUMAN	paired box 1	287					regulation of transcription, DNA-dependent|skeletal system development|transcription from RNA polymerase II promoter	nucleus	DNA binding			upper_aerodigestive_tract(1)|kidney(1)	2						CGCTCATGGCCCTCGGCACAC	0.662													4	26					0	0	1	0	0
FOXA2	3170	broad.mit.edu	37	20	22562578	22562578	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:22562578C>T	uc002wsn.2	-	3	1474	c.1284G>A	c.(1282-1284)ACG>ACA	p.T428T	FOXA2_uc002wsm.2_Silent_p.T434T	NM_153675	NP_710141	Q9Y261	FOXA2_HUMAN	forkhead box A2 isoform 2	428	Transactivation domain 2 (By similarity).				cell differentiation in hindbrain|central nervous system myelin formation|chromatin modification|dorsal/ventral neural tube patterning|ectoderm formation|endocrine pancreas development|endoderm development|epithelial tube branching involved in lung morphogenesis|in utero embryonic development|lung epithelial cell differentiation|negative regulation of neuron differentiation|neuron fate specification|oligodendrocyte cell fate commitment|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of neuron differentiation|primitive streak formation|regulation of blood coagulation|regulation of sequence-specific DNA binding transcription factor activity|response to interleukin-6	cytoplasm|transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding	p.T428T(1)		ovary(2)|kidney(1)|central_nervous_system(1)	4	Lung NSC(19;0.188)					CCGTTTTGTTCGTGACCGGGC	0.597													15	117					0	0	1	0	0
SSTR4	6754	broad.mit.edu	37	20	23016468	23016468	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:23016468C>T	uc002wsr.2	+	1	412	c.348C>T	c.(346-348)TCC>TCT	p.S116S		NM_001052	NP_001043	P31391	SSR4_HUMAN	somatostatin receptor 4	116	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			ovary(1)	1	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CCTTCGGCTCCGTGCTGTGCC	0.667													13	74					0	0	1	0	0
CST2	1470	broad.mit.edu	37	20	23805958	23805958	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:23805958G>A	uc002wtq.1	-	2	246	c.231C>T	c.(229-231)ATC>ATT	p.I77I		NM_001322	NP_001313	P09228	CYTT_HUMAN	cystatin SA precursor	77	Secondary area of contact.					extracellular region	cysteine-type endopeptidase inhibitor activity				0						CCCCGCCCACGATCTACACAC	0.547													20	73					0	0	1	0	0
GGTLC1	92086	broad.mit.edu	37	20	23966723	23966723	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:23966723G>A	uc002wts.2	-	3	427	c.294C>T	c.(292-294)TTC>TTT	p.F98F	GGTLC1_uc002wtu.2_Silent_p.F98F	NM_178312	NP_842564	Q9BX51	GGTL1_HUMAN	gamma-glutamyltransferase light chain 1	98							gamma-glutamyltransferase activity			ovary(1)	1						CTGGCTGGATGAAATTGGCAG	0.612													7	101					0	0	1	0	0
GGTLC1	92086	broad.mit.edu	37	20	23966798	23966798	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:23966798G>A	uc002wts.2	-	3	352	c.219C>T	c.(217-219)CTC>CTT	p.L73L	GGTLC1_uc002wtu.2_Silent_p.L73L	NM_178312	NP_842564	Q9BX51	GGTL1_HUMAN	gamma-glutamyltransferase light chain 1	73							gamma-glutamyltransferase activity			ovary(1)	1						TTTCATTATTGAGCAGGATCC	0.582													17	91					0	0	1	0	0
PYGB	5834	broad.mit.edu	37	20	25255248	25255248	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:25255248G>A	uc002wup.2	+	5	658	c.549G>A	c.(547-549)TGG>TGA	p.W183*		NM_002862	NP_002853	P11216	PYGB_HUMAN	brain glycogen phosphorylase	183					glucose metabolic process|glycogen catabolic process	cytoplasm	glycogen phosphorylase activity|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					Pyridoxal Phosphate(DB00114)	CCGATGACTGGCTGCGCTACG	0.652													4	67					0	0	1	0	0
FRG1B	284802	broad.mit.edu	37	20	29625895	29625895	+	Missense_Mutation	SNP	G	A	A	rs76435412	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:29625895G>A	uc010ztl.1	+	2	81	c.49G>A	c.(49-51)GGA>AGA	p.G17R	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATCTGGCTATGGAAAATATCT	0.343													7	14					0	0	1	0	0
MYLK2	85366	broad.mit.edu	37	20	30408108	30408109	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:30408108_30408109GG>AA	uc002wwq.2	+	3	334_335	c.232_233GG>AA	c.(232-234)GGA>AAA	p.G78K		NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	78					cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			AGGCCCCAAAGGAGAGGGTGAC	0.668													4	41					0	0	1	0	0
FOXS1	2307	broad.mit.edu	37	20	30432759	30432759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:30432759G>A	uc002wwt.1	-	1	662	c.587C>T	c.(586-588)TCC>TTC	p.S196F		NM_004118	NP_004109	O43638	FOXS1_HUMAN	forkhead box S1	196					anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|insulin receptor signaling pathway|lymphangiogenesis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|neural crest cell fate commitment|neuromuscular process controlling balance|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of multicellular organism growth|positive regulation of transcription from RNA polymerase II promoter|regulation of blood vessel size|regulation of organ growth|somitogenesis|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)	1						CTTGGGCGTGGAAATCTCTTT	0.632													6	59					0	0	1	0	0
FOXS1	2307	broad.mit.edu	37	20	30432890	30432890	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:30432890G>A	uc002wwt.1	-	1	531	c.456C>T	c.(454-456)TGC>TGT	p.C152C		NM_004118	NP_004109	O43638	FOXS1_HUMAN	forkhead box S1	152					anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|insulin receptor signaling pathway|lymphangiogenesis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|neural crest cell fate commitment|neuromuscular process controlling balance|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of multicellular organism growth|positive regulation of transcription from RNA polymerase II promoter|regulation of blood vessel size|regulation of organ growth|somitogenesis|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)	1						GTGGGAATGAGCACTGCCTGC	0.687													3	34					0	0	1	0	0
TTLL9	164395	broad.mit.edu	37	20	30486309	30486309	+	Silent	SNP	C	T	T	rs113297228		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:30486309C>T	uc010gdx.1	+	4	400	c.147C>T	c.(145-147)ACC>ACT	p.T49T	TTLL9_uc002wwy.1_RNA|TTLL9_uc002wwz.1_RNA|TTLL9_uc002wxa.1_RNA|TTLL9_uc002wxb.1_RNA|TTLL9_uc010zto.1_RNA|TTLL9_uc002wxc.2_Missense_Mutation_p.P59S|TTLL9_uc010ztp.1_RNA	NM_001008409	NP_001008409	Q3SXZ7	TTLL9_HUMAN	tubulin tyrosine ligase-like family, member 9	49	TTL.				protein modification process	cilium|microtubule|microtubule basal body	ATP binding|tubulin-tyrosine ligase activity			ovary(2)	2			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			TCAAGACCACCCTCATGAACA	0.537													6	56					0	0	1	0	0
HCK	3055	broad.mit.edu	37	20	30672323	30672323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:30672323G>A	uc002wxh.2	+	8	983	c.812G>A	c.(811-813)GGG>GAG	p.G271E	HCK_uc010gdy.2_Missense_Mutation_p.G250E|HCK_uc002wxi.2_Missense_Mutation_p.G249E	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	271	Protein kinase.|ATP.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CTTGGAGCTGGGCAGTTTGGG	0.602													6	43					0	0	1	0	0
HCK	3055	broad.mit.edu	37	20	30674595	30674595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:30674595G>A	uc002wxh.2	+	9	1171	c.1000G>A	c.(1000-1002)GAG>AAG	p.E334K	HCK_uc010gdy.2_Missense_Mutation_p.E313K|HCK_uc002wxi.2_Missense_Mutation_p.E312K	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	334	Protein kinase.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CATCATCACGGAGTTCATGGC	0.577													8	53					0	0	1	0	0
KIF3B	9371	broad.mit.edu	37	20	30898189	30898189	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:30898189C>T	uc002wxq.2	+	2	776	c.609C>T	c.(607-609)GTC>GTT	p.V203V	KIF3B_uc010ztv.1_Silent_p.V203V|KIF3B_uc010ztw.1_Silent_p.V203V	NM_004798	NP_004789	O15066	KIF3B_HUMAN	kinesin family member 3B	203	Kinesin-motor.				anterograde axon cargo transport|blood coagulation|determination of left/right symmetry|mitotic centrosome separation|plus-end-directed vesicle transport along microtubule|spindle assembly involved in mitosis	centrosome|cytosol|kinesin II complex|plus-end kinesin complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|Rho GTPase binding			central_nervous_system(3)|ovary(2)	5			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			ACCGTTCTGTCGGTGCTACCA	0.493													4	32					0	0	1	0	0
ASXL1	171023	broad.mit.edu	37	20	31017746	31017746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:31017746C>T	uc002wxs.2	+	7	1034	c.608C>T	c.(607-609)TCC>TTC	p.S203F	ASXL1_uc010geb.2_Intron	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	203	Poly-Ser.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						GGCAGCCCGTCCAGCAGCAGC	0.667			F|N|Mis		MDS|CMML								15	43					0	0	1	0	0
C20orf112	140688	broad.mit.edu	37	20	31041211	31041211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:31041211C>T	uc002wxu.3	-	5	818	c.661G>A	c.(661-663)GAG>AAG	p.E221K	C20orf112_uc010gec.2_Missense_Mutation_p.E46K	NM_080616	NP_542183	Q96MY1	CT112_HUMAN	hypothetical protein LOC140688	221											0						CTGCAGGACTCGATGATGGCC	0.597													4	44					0	0	1	0	0
DNMT3B	1789	broad.mit.edu	37	20	31376724	31376724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:31376724C>T	uc002wyc.2	+	7	1040	c.719C>T	c.(718-720)CCC>CTC	p.P240L	DNMT3B_uc010ztx.1_RNA|DNMT3B_uc010zty.1_RNA|DNMT3B_uc002wyd.2_Missense_Mutation_p.P240L|DNMT3B_uc002wye.2_Missense_Mutation_p.P240L|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Missense_Mutation_p.P198L|DNMT3B_uc010zua.1_Missense_Mutation_p.P164L|DNMT3B_uc002wyf.2_Missense_Mutation_p.P252L|DNMT3B_uc002wyg.2_5'Flank	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	240	PWWP.|Interaction with DNMT1 and DNMT3A.				negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						TCCTGGTGGCCCGCCATGGTG	0.567													16	63					0	0	1	0	0
SUN5	140732	broad.mit.edu	37	20	31572946	31572946	+	Nonsense_Mutation	SNP	G	A	A	rs147686372		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:31572946G>A	uc002wyi.2	-	12	1036	c.943C>T	c.(943-945)CAG>TAG	p.Q315*		NM_080675	NP_542406	Q8TC36	SUN5_HUMAN	sperm associated antigen 4-like	315	SUN.				spermatogenesis					skin(1)	1						GGCTGAAACTGAAATGCCCCC	0.433													11	72					0	0	1	0	0
BPIL1	80341	broad.mit.edu	37	20	31606532	31606532	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:31606532C>T	uc002wyj.2	+	9	953	c.759C>T	c.(757-759)TCC>TCT	p.S253S		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	253						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						CCGAGGGCTCCATGGCCACCG	0.627													18	100					0	0	1	0	0
BPIL1	80341	broad.mit.edu	37	20	31606600	31606600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:31606600C>T	uc002wyj.2	+	9	1021	c.827C>T	c.(826-828)GCC>GTC	p.A276V		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	276						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						AAGGCCGGTGCCCTCAACCTG	0.672													11	50					0	0	1	0	0
BPIL3	128859	broad.mit.edu	37	20	31621995	31621995	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:31621995G>A	uc010zuc.1	+	3	201	c.201G>A	c.(199-201)TTG>TTA	p.L67L	BPIL3_uc010zud.1_Silent_p.L6L	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	67						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						TTCCCAGTTTGAAGGTGAAGG	0.527													21	90					0	0	1	0	0
C20orf114	92747	broad.mit.edu	37	20	31873905	31873905	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:31873905T>C	uc002wyw.1	+	2	187	c.26T>C	c.(25-27)CTT>CCT	p.L9P	C20orf114_uc010gej.1_Missense_Mutation_p.L9P	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	9						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						ACCTTCACCCTTCTCTGTGGT	0.577													8	81					0	0	1	0	0
C20orf114	92747	broad.mit.edu	37	20	31877752	31877752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:31877752G>A	uc002wyw.1	+	4	480	c.319G>A	c.(319-321)GAG>AAG	p.E107K	C20orf114_uc010gej.1_Missense_Mutation_p.E107K	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	107						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						CAATGACCAGGAGCTGCTAGT	0.552													4	47					0	0	1	0	0
ZNF341	84905	broad.mit.edu	37	20	32344962	32344962	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:32344962C>T	uc002wzy.2	+	6	770	c.750C>T	c.(748-750)AAC>AAT	p.N250N	ZNF341_uc002wzx.2_Silent_p.N250N|ZNF341_uc010geq.2_Silent_p.N160N|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	250					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AGGTGCCAAACCAGTGTGTGG	0.597													29	196					0	0	1	0	0
AHCY	191	broad.mit.edu	37	20	32873263	32873263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:32873263G>A	uc002xai.2	-	9	1289	c.1150C>T	c.(1150-1152)CAT>TAT	p.H384Y	AHCY_uc002xaj.2_Missense_Mutation_p.H356Y	NM_000687	NP_000678	P23526	SAHH_HUMAN	adenosylhomocysteinase isoform 1	384					methylation|xenobiotic metabolic process	cytosol|melanosome	adenosylhomocysteinase activity|protein binding				0						GGCAGGAAATGAACCCCAACG	0.537													11	59					0	0	1	0	0
ITCH	83737	broad.mit.edu	37	20	33026293	33026293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:33026293G>A	uc010geu.1	+	9	851	c.659G>A	c.(658-660)GGA>GAA	p.G220E	ITCH_uc002xak.2_Missense_Mutation_p.G179E|ITCH_uc010zuj.1_Missense_Mutation_p.G69E	NM_031483	NP_113671	Q96J02	ITCH_HUMAN	itchy homolog E3 ubiquitin protein ligase	220					apoptosis|entry of virus into host cell|inflammatory response|innate immune response|negative regulation of apoptosis|negative regulation of defense response to virus|negative regulation of JNK cascade|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K29-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cell growth|regulation of protein deubiquitination|response to virus	cytosol|nucleus|plasma membrane	CXCR chemokine receptor binding|ribonucleoprotein binding|ubiquitin-protein ligase activity			breast(4)|lung(1)|central_nervous_system(1)	6						AGCACAAATGGATCAGATGAC	0.423													6	48					0	0	1	0	0
GGT7	2686	broad.mit.edu	37	20	33437843	33437843	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:33437843G>A	uc002xay.2	-	14	1789	c.1746C>T	c.(1744-1746)ACC>ACT	p.T582T	GGT7_uc010gex.2_RNA|GGT7_uc002xaz.1_Silent_p.T599T	NM_178026	NP_821158	Q9UJ14	GGT7_HUMAN	gamma-glutamyltransferase 7	582	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(1)	1						TCCGGTTCAAGGTCAGGACAT	0.597													10	46					0	0	1	0	0
GGT7	2686	broad.mit.edu	37	20	33440071	33440071	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:33440071G>A	uc002xay.2	-	12	1517	c.1474C>T	c.(1474-1476)CTG>TTG	p.L492L	GGT7_uc010gex.2_5'Flank|GGT7_uc002xaz.1_Silent_p.L509L	NM_178026	NP_821158	Q9UJ14	GGT7_HUMAN	gamma-glutamyltransferase 7	492	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(1)	1						GGCTGGTTCAGGGAGCTGGGG	0.637													7	58					0	0	1	0	0
ACSS2	55902	broad.mit.edu	37	20	33500982	33500982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:33500982G>A	uc002xbd.2	+	3	579	c.458G>A	c.(457-459)CGA>CAA	p.R153Q	ACSS2_uc002xbc.2_Missense_Mutation_p.R58Q|ACSS2_uc010zum.1_Intron|ACSS2_uc010gey.2_Missense_Mutation_p.R153Q|ACSS2_uc002xbe.2_Intron|ACSS2_uc002xbf.2_Intron	NM_018677	NP_061147	Q9NR19	ACSA_HUMAN	acyl-CoA synthetase short-chain family member 2	153					ethanol oxidation|lipid biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	acetate-CoA ligase activity|ATP binding|protein binding				0					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	AATGTTCTCCGAAAACAGGGT	0.532													5	68					0	0	1	0	0
ACSS2	55902	broad.mit.edu	37	20	33509371	33509371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:33509371C>T	uc002xbd.2	+	12	1556	c.1435C>T	c.(1435-1437)CCT>TCT	p.P479S	ACSS2_uc002xbc.2_Missense_Mutation_p.P384S|ACSS2_uc010zum.1_Intron|ACSS2_uc010gey.2_Missense_Mutation_p.P492S|ACSS2_uc002xbe.2_Missense_Mutation_p.P187S|ACSS2_uc002xbf.2_Intron	NM_018677	NP_061147	Q9NR19	ACSA_HUMAN	acyl-CoA synthetase short-chain family member 2	479					ethanol oxidation|lipid biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	acetate-CoA ligase activity|ATP binding|protein binding				0					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GACTCCCCTTCCTGGTGCCAC	0.562													15	122					0	0	1	0	0
MYH7B	57644	broad.mit.edu	37	20	33567246	33567246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:33567246G>A	uc010gfa.1	+	3	266	c.145G>A	c.(145-147)GTC>ATC	p.V49I	MYH7B_uc002xbi.1_Missense_Mutation_p.V91I			A7E2Y1	MYH7B_HUMAN	RecName: Full=Myosin-7B; AltName: Full=Myosin heavy chain 7B, cardiac muscle beta isoform; AltName: Full=Myosin cardiac muscle beta chain; AltName: Full=Antigen MLAA-21; AltName: Full=Slow A MYH14;	49						membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			GGAGGCCGAGGTCAAGTCGGA	0.607													6	29					0	0	1	0	0
MYH7B	57644	broad.mit.edu	37	20	33582181	33582181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:33582181G>A	uc002xbi.1	+	25	2895	c.2803G>A	c.(2803-2805)GAC>AAC	p.D935N		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	893	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			GGAGAAGAATGACCTGGCCCT	0.677													6	43					0	0	1	0	0
PROCR	10544	broad.mit.edu	37	20	33764014	33764014	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:33764014C>A	uc002xbt.2	+	3	550	c.366C>A	c.(364-366)CCC>CCA	p.P122P	EDEM2_uc010zuv.1_Intron|PROCR_uc010zuw.1_Silent_p.P159P	NM_006404	NP_006395	Q9UNN8	EPCR_HUMAN	endothelial protein C receptor precursor	122	Extracellular (Potential).				antigen processing and presentation|blood coagulation|immune response	integral to plasma membrane|MHC class I protein complex	receptor activity				0			BRCA - Breast invasive adenocarcinoma(18;0.0152)		Drotrecogin alfa(DB00055)	AGCTGCCTCCCGAGGGCTCTA	0.612													5	139					1	1	1	1	0
MMP24	10893	broad.mit.edu	37	20	33834663	33834663	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:33834663C>T	uc002xbu.2	+	2	270	c.267C>T	c.(265-267)GGC>GGT	p.G89G	EDEM2_uc010zuv.1_Intron	NM_006690	NP_006681	Q9Y5R2	MMP24_HUMAN	matrix metalloproteinase 24 preproprotein	89	Extracellular (Potential).				proteolysis	integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00252)			AGTCCTATGGCTATCTGCTTC	0.522													12	98					0	0	1	0	0
FAM83C	128876	broad.mit.edu	37	20	33875357	33875357	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:33875357G>A	uc010zux.1	-	4	1343	c.1225C>T	c.(1225-1227)CTC>TTC	p.L409F	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Intron	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	409										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GCCCTATAGAGCCCAGGAGGG	0.627													7	35					0	0	1	0	0
GDF5	8200	broad.mit.edu	37	20	34022080	34022080	+	Missense_Mutation	SNP	C	T	T	rs121909350		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:34022080C>T	uc002xck.1	-	2	1452	c.1133G>A	c.(1132-1134)CGA>CAA	p.R378Q	GDF5_uc010gfc.1_Missense_Mutation_p.R378Q|uc002xcj.2_Missense_Mutation_p.S164L|GDF5_uc010zvc.1_Missense_Mutation_p.R378Q	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	378			R -> Q (in DPS).		cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			CCGCCGTTTTCGCCGCTGGCT	0.577													30	157					0	0	1	0	0
ERGIC3	51614	broad.mit.edu	37	20	34145016	34145016	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:34145016C>T	uc002xct.2	+	12	1137	c.1068C>T	c.(1066-1068)TTC>TTT	p.F356F	ERGIC3_uc002xcs.2_Silent_p.F361F|ERGIC3_uc002xcu.2_Silent_p.F371F|ERGIC3_uc002xcv.2_Silent_p.F319F	NM_015966	NP_057050	Q9Y282	ERGI3_HUMAN	serologically defined breast cancer antigen 84	356	Helical; (Potential).				vesicle-mediated transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi apparatus|integral to membrane	protein binding			large_intestine(2)|ovary(1)	3	Lung NSC(9;0.00489)|all_lung(11;0.00729)		BRCA - Breast invasive adenocarcinoma(18;0.0127)			GGGGCATGTTCACAGGTAAGA	0.632													11	122					0	0	1	0	0
DLGAP4	22839	broad.mit.edu	37	20	35061005	35061005	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:35061005C>T	uc002xff.2	+	3	1320	c.885C>T	c.(883-885)TCC>TCT	p.S295S	DLGAP4_uc010zvp.1_Silent_p.S295S	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	295					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				GCTCCTGGTCCACTCTGACCC	0.647													4	24					0	0	1	0	0
TGIF2	60436	broad.mit.edu	37	20	35219364	35219364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:35219364C>T	uc002xfn.2	+	3	417	c.244C>T	c.(244-246)CGG>TGG	p.R82W	C20orf24_uc002xfo.2_Intron	NM_021809	NP_068581	Q9GZN2	TGIF2_HUMAN	TGFB-induced factor homeobox 2	82						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)|skin(1)	2	Breast(12;0.114)	Myeloproliferative disorder(115;0.00878)				AGACATGCTTCGGAAGGATGG	0.532													27	233					0	0	1	0	0
C20orf117	140710	broad.mit.edu	37	20	35441193	35441193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:35441193G>A	uc002xgd.1	-	6	1984	c.1657C>T	c.(1657-1659)CGC>TGC	p.R553C	C20orf117_uc002xge.1_RNA	NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	553											0		Myeloproliferative disorder(115;0.00874)				TCACCAGTGCGGAAAGCCTCT	0.592													4	23					0	0	1	0	0
C20orf118	140711	broad.mit.edu	37	20	35509089	35509089	+	Missense_Mutation	SNP	G	A	A	rs143460335		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:35509089G>A	uc002xgg.1	+	4	382	c.374G>A	c.(373-375)CGA>CAA	p.R125Q		NM_080628	NP_542195	A0PJX2	CT118_HUMAN	hypothetical protein LOC140711	125	TLD.										0		Myeloproliferative disorder(115;0.00874)				TCGGCTATCCGACTCAGCAAA	0.423													11	110					0	0	1	0	0
RPN2	6185	broad.mit.edu	37	20	35852293	35852293	+	Missense_Mutation	SNP	A	T	T	rs138101348	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:35852293A>T	uc002xgp.2	+	10	1409	c.1105A>T	c.(1105-1107)ATC>TTC	p.I369F	RPN2_uc002xgo.3_Missense_Mutation_p.I369F|RPN2_uc010gfw.2_Missense_Mutation_p.I212F|RPN2_uc002xgq.2_Missense_Mutation_p.I337F	NM_002951	NP_002942	P04844	RPN2_HUMAN	ribophorin II isoform 1 precursor	369	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|nucleus|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CAGAGTCAAGATCTCCACTGA	0.433													3	26					0	0	1	0	0
TGM2	7052	broad.mit.edu	37	20	36776458	36776458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:36776458G>A	uc002xhr.2	-	5	686	c.586C>T	c.(586-588)CTT>TTT	p.L196F	TGM2_uc010zvx.1_Missense_Mutation_p.L115F|TGM2_uc010zvy.1_Missense_Mutation_p.L136F|TGM2_uc002xhs.1_Missense_Mutation_p.L172F|TGM2_uc002xht.2_Missense_Mutation_p.L196F|TGM2_uc002xhu.3_Missense_Mutation_p.L196F	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	196					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	ACATCTAGAAGGATCAGGCAG	0.478													4	83					0	0	1	0	0
BPI	671	broad.mit.edu	37	20	36937434	36937434	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:36937434G>A	uc002xib.2	+	3	422	c.360G>A	c.(358-360)GGG>GGA	p.G120G		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	120					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				AGATCAGCGGGAAATGGAAGG	0.493													8	61					0	0	1	0	0
BPI	671	broad.mit.edu	37	20	36959481	36959481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:36959481G>A	uc002xib.2	+	12	1335	c.1273G>A	c.(1273-1275)GGC>AGC	p.G425S		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	425					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				CTCAAATATTGGCCCCTTCCC	0.562													6	86					0	0	1	0	0
DHX35	60625	broad.mit.edu	37	20	37620139	37620139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:37620139C>T	uc002xjh.2	+	6	504	c.493C>T	c.(493-495)CCG>TCG	p.P165S	DHX35_uc010zwa.1_Missense_Mutation_p.P10S|DHX35_uc010zwb.1_Missense_Mutation_p.P10S|DHX35_uc010zwc.1_Missense_Mutation_p.P134S	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	165	Helicase ATP-binding.					catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				GATGGTTGATCCGTTGTTAAC	0.353													6	24					0	0	1	0	0
LPIN3	64900	broad.mit.edu	37	20	39984583	39984583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:39984583C>T	uc002xjx.2	+	14	1803	c.1712C>T	c.(1711-1713)CCT>CTT	p.P571L	LPIN3_uc010ggh.2_Missense_Mutation_p.P572L|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	571					fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				CCAGACAGCCCTGTGATCCTG	0.498													5	68					0	0	1	0	0
EMILIN3	90187	broad.mit.edu	37	20	39990462	39990462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:39990462C>T	uc002xjy.1	-	4	1971	c.1747G>A	c.(1747-1749)GAG>AAG	p.E583K		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	583						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				AGAGTGATCTCGCCTTGAAGT	0.592													14	109					0	0	1	0	0
CHD6	84181	broad.mit.edu	37	20	40033762	40033762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:40033762G>A	uc002xka.1	-	37	7797	c.7619C>T	c.(7618-7620)CCA>CTA	p.P2540L	CHD6_uc002xjz.1_Missense_Mutation_p.P77L	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2540					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				TGCCATGGGTGGACTGAGGAG	0.562													10	103					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40944371	40944371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:40944371C>T	uc002xkg.2	-	12	2315	c.2131G>A	c.(2131-2133)GCC>ACC	p.A711T	PTPRT_uc010ggj.2_Missense_Mutation_p.A711T	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	711	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ACTCCATTGGCTTTGCTGAGT	0.443													7	41					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40979300	40979300	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:40979300C>T	uc002xkg.2	-	11	2017	c.1833G>A	c.(1831-1833)CTG>CTA	p.L611L	PTPRT_uc010ggj.2_Silent_p.L611L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	611	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GAGCGGGTTTCAGCATCACTG	0.532													8	47					0	0	1	0	0
SGK2	10110	broad.mit.edu	37	20	42195097	42195097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:42195097C>T	uc002xkv.2	+	1	361	c.142C>T	c.(142-144)CTC>TTC	p.L48F	SGK2_uc002xkt.2_Intron|SGK2_uc002xkr.2_Intron|SGK2_uc010ggm.2_Intron|SGK2_uc002xks.2_Intron|SGK2_uc002xku.2_Intron|SGK2_uc002xkq.1_Intron	NM_016276	NP_057360	Q9HBY8	SGK2_HUMAN	serum/glucocorticoid regulated kinase 2 isoform	48					intracellular protein kinase cascade|response to oxidative stress		ATP binding|potassium channel regulator activity|protein serine/threonine kinase activity|sodium channel regulator activity			lung(3)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	6		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			ATGCCTGCTCCTCCCTGTCCC	0.617													7	82					0	0	1	0	0
SGK2	10110	broad.mit.edu	37	20	42204950	42204950	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:42204950C>T	uc002xkv.2	+	10	1179	c.960C>T	c.(958-960)GCC>GCT	p.A320A	SGK2_uc002xkt.2_RNA|SGK2_uc002xkr.2_Silent_p.A260A|SGK2_uc010ggm.2_Silent_p.A260A|SGK2_uc002xks.2_Silent_p.A259A|SGK2_uc002xku.2_Silent_p.A260A	NM_016276	NP_057360	Q9HBY8	SGK2_HUMAN	serum/glucocorticoid regulated kinase 2 isoform	320	Protein kinase.				intracellular protein kinase cascade|response to oxidative stress		ATP binding|potassium channel regulator activity|protein serine/threonine kinase activity|sodium channel regulator activity			lung(3)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	6		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			GGACAGTGGCCGCCTGTGACC	0.607													5	72					0	0	1	0	0
HNF4A	3172	broad.mit.edu	37	20	43057117	43057117	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:43057117G>A	uc002xma.2	+	9	1361	c.1272G>A	c.(1270-1272)AGG>AGA	p.R424R	HNF4A_uc002xlu.2_Intron|HNF4A_uc002xlv.2_Silent_p.R402R|HNF4A_uc002xlz.2_Intron|HNF4A_uc010ggq.2_Silent_p.R417R	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	424					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CCCGACCCAGGGGACAGGCAG	0.547													11	191					0	0	1	0	0
HNF4A	3172	broad.mit.edu	37	20	43058182	43058182	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:43058182G>A	uc002xma.2	+	10	1391	c.1302G>A	c.(1300-1302)CAG>CAA	p.Q434Q	HNF4A_uc002xlu.2_Silent_p.Q402Q|HNF4A_uc002xlv.2_Silent_p.Q412Q|HNF4A_uc002xlz.2_Silent_p.Q424Q|HNF4A_uc010ggq.2_Silent_p.Q427Q	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	434					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			AGACCCCACAGCCCTCACCGC	0.607													22	323					0	0	1	0	0
PKIG	11142	broad.mit.edu	37	20	43243233	43243233	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:43243233C>T	uc002xmg.2	+	5	565	c.36C>T	c.(34-36)ATC>ATT	p.I12I	PKIG_uc002xmh.2_Silent_p.I12I|PKIG_uc002xmi.2_Silent_p.I12I	NM_181805	NP_861521	Q9Y2B9	IPKG_HUMAN	cAMP-dependent protein kinase inhibitor gamma	12							cAMP-dependent protein kinase inhibitor activity|protein binding				0		Myeloproliferative disorder(115;0.0122)	Colorectal(3;0.001)|COAD - Colon adenocarcinoma(18;0.00189)			CGGACTTCATCTCCTGTGACC	0.617													7	85					0	0	1	0	0
PI3	5266	broad.mit.edu	37	20	43804646	43804646	+	Missense_Mutation	SNP	C	T	T	rs148103941		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:43804646C>T	uc002xng.2	+	2	248	c.224C>T	c.(223-225)TCC>TTC	p.S75F		NM_002638	NP_002629	P19957	ELAF_HUMAN	elafin preproprotein	75	WAP.				copulation	proteinaceous extracellular matrix	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				AAGCCTGGCTCCTGCCCCATT	0.488													10	41					0	0	1	0	0
PI3	5266	broad.mit.edu	37	20	43804673	43804674	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:43804673_43804674CC>TT	uc002xng.2	+	2	275_276	c.251_252CC>TT	c.(250-252)GCC>GTT	p.A84V		NM_002638	NP_002629	P19957	ELAF_HUMAN	elafin preproprotein	84	WAP.				copulation	proteinaceous extracellular matrix	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				ATCCGGTGCGCCATGTTGAATC	0.515													9	44					0	0	1	0	0
SEMG1	6406	broad.mit.edu	37	20	43837178	43837178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:43837178G>A	uc002xni.2	+	2	1297	c.1240G>A	c.(1240-1242)GAA>AAA	p.E414K	SEMG1_uc002xnj.2_Missense_Mutation_p.E354K|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Missense_Mutation_p.E354K	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	414	42 AA repeat 3.				insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				TACAAATAGAGAACAAGACCT	0.443													3	20					0	0	1	0	0
SLPI	6590	broad.mit.edu	37	20	43882257	43882257	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:43882257C>A	uc002xnm.1	-	2	225	c.203G>T	c.(202-204)TGT>TTT	p.C68F		NM_003064	NP_003055	P03973	SLPI_HUMAN	secretory leukocyte peptidase inhibitor	68	Trypsin inhibitory domain.|WAP 1.					extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TTTGATGCCACAAGTGTCAGG	0.527													3	23					0.115264	0.115996	1	1	0
MATN4	8785	broad.mit.edu	37	20	43930062	43930062	+	Missense_Mutation	SNP	C	T	T	rs138656425	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:43930062C>T	uc002xnn.2	-	4	852	c.665G>A	c.(664-666)GGG>GAG	p.G222E	MATN4_uc002xno.2_Intron|MATN4_uc002xnp.2_Intron|MATN4_uc010zwr.1_Missense_Mutation_p.G170E|MATN4_uc002xnr.1_Missense_Mutation_p.G222E	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	263	EGF-like 2.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				TCCATGGGTCCCTTCAGCACA	0.527													3	30					0	0	1	0	0
TP53TG5	27296	broad.mit.edu	37	20	44005983	44005983	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:44005983C>T	uc002xny.2	-	3	205	c.124_splice	c.e3-1	p.V42_splice	SYS1-DBNDD2_uc002xnx.2_Intron	NM_014477	NP_055292	Q9Y2B4	T53G5_HUMAN	TP53-target gene 5 protein						intracellular signal transduction|negative regulation of cell growth	cytoplasm|nucleus				central_nervous_system(1)	1						TTTTTAACACCTGCCAGGGTC	0.542													26	95					0	0	1	0	0
WFDC13	164237	broad.mit.edu	37	20	44333082	44333082	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:44333082G>A	uc002xpd.2	+	2	197	c.89_splice	c.e2-1	p.K30_splice	WFDC10B_uc002xpb.2_Intron|WFDC10B_uc002xpc.2_Intron	NM_172005	NP_742002	Q8IUB5	WFD13_HUMAN	WAP four-disulfide core domain 13 precursor							extracellular region	peptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				CTGTGTTCCAGAGTATATCTT	0.488													3	33					0	0	1	0	0
SLC12A5	57468	broad.mit.edu	37	20	44670089	44670089	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:44670089T>C	uc010zxl.1	+	8	1121	c.1045T>C	c.(1045-1047)TTC>CTC	p.F349L	SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Missense_Mutation_p.F326L	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	349	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	CTCCTCTCGCTTCCTCAACGC	0.562													8	60					0	0	1	0	0
NCOA5	57727	broad.mit.edu	37	20	44691067	44691067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:44691067G>A	uc002xrd.2	-	7	2140	c.1612C>T	c.(1612-1614)CCA>TCA	p.P538S	NCOA5_uc002xrc.2_3'UTR|NCOA5_uc002xre.2_Missense_Mutation_p.P538S	NM_020967	NP_066018	Q9HCD5	NCOA5_HUMAN	nuclear receptor coactivator 5	538	Transcription activation.				regulation of transcription, DNA-dependent|transcription, DNA-dependent|translation	nucleus	aminoacyl-tRNA ligase activity|ATP binding			central_nervous_system(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				TGTACACTTGGATTGTCAAAG	0.572													4	34					0	0	1	0	0
CDH22	64405	broad.mit.edu	37	20	44845482	44845482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:44845482G>A	uc002xrm.2	-	4	1222	c.821C>T	c.(820-822)CCG>CTG	p.P274L	CDH22_uc010ghk.1_Missense_Mutation_p.P274L|CDH22_uc002xrn.1_Missense_Mutation_p.P25L	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	274	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				GAAACGGGGCGGGTTGTCATT	0.622													6	93					0	0	1	0	0
SLC35C2	51006	broad.mit.edu	37	20	44983827	44983827	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:44983827G>A	uc002xro.2	-	6	1003	c.462C>T	c.(460-462)TTC>TTT	p.F154F	SLC35C2_uc002xrp.2_Intron|SLC35C2_uc002xrq.2_Silent_p.F154F|SLC35C2_uc002xrr.2_Silent_p.F154F|SLC35C2_uc010zxn.1_Intron|SLC35C2_uc010zxo.1_Silent_p.F40F|SLC35C2_uc010zxp.1_Silent_p.F183F	NM_173179	NP_775271	Q9NQQ7	S35C2_HUMAN	solute carrier family 35, member C2 isoform a	154	Helical; (Potential).				transport	integral to membrane				ovary(1)	1		Myeloproliferative disorder(115;0.0122)				ACTTGTAGGTGAACATGAAGA	0.627													8	41					0	0	1	0	0
SLC13A3	64849	broad.mit.edu	37	20	45188825	45188825	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:45188825G>A	uc002xsf.1	-	13	1683	c.1645C>T	c.(1645-1647)CTC>TTC	p.L549F	SLC13A3_uc010ghn.1_Missense_Mutation_p.L518F|SLC13A3_uc010zxw.1_Missense_Mutation_p.L499F|SLC13A3_uc002xsg.1_Missense_Mutation_p.L502F|SLC13A3_uc010gho.1_Missense_Mutation_p.L467F|SLC13A3_uc002xse.1_Missense_Mutation_p.L40F|SLC13A3_uc010ghm.1_Missense_Mutation_p.L136F|SLC13A3_uc010zxv.1_Missense_Mutation_p.L134F	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	549	Helical; (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	TTCATCAGGAGGCCTGTCCGC	0.438													9	71					0	0	1	0	0
SLC13A3	64849	broad.mit.edu	37	20	45194880	45194880	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:45194880G>A	uc002xsf.1	-	11	1520	c.1482C>T	c.(1480-1482)GTC>GTT	p.V494V	SLC13A3_uc010ghn.1_Silent_p.V463V|SLC13A3_uc010zxw.1_Silent_p.V444V|SLC13A3_uc002xsg.1_Silent_p.V447V|SLC13A3_uc010gho.1_Silent_p.V412V|SLC13A3_uc010zxx.1_Silent_p.V396V|SLC13A3_uc002xse.1_5'Flank|SLC13A3_uc010ghm.1_Silent_p.V81V|SLC13A3_uc010zxv.1_Silent_p.V79V	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	494	Extracellular (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	GCTCTGCCAGGACCGGCAGGA	0.612													15	134					0	0	1	0	0
SLC13A3	64849	broad.mit.edu	37	20	45217842	45217842	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:45217842G>A	uc002xsf.1	-	7	1011	c.973C>T	c.(973-975)CGA>TGA	p.R325*	SLC13A3_uc010ghn.1_Nonsense_Mutation_p.R294*|SLC13A3_uc010zxw.1_Nonsense_Mutation_p.R275*|SLC13A3_uc002xsg.1_Nonsense_Mutation_p.R278*|SLC13A3_uc010gho.1_Nonsense_Mutation_p.R278*|SLC13A3_uc010zxx.1_Nonsense_Mutation_p.R227*	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	325	Cytoplasmic (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	ATTACAGCTCGAGCCCTATCT	0.483													6	106					0	0	1	0	0
SLC2A10	81031	broad.mit.edu	37	20	45353687	45353687	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:45353687C>T	uc002xsl.2	+	2	109	c.12C>T	c.(10-12)TCC>TCT	p.S4S		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	4	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TAGGCCACTCCCCACCTGTCC	0.403													5	81					0	0	1	0	0
SLC2A10	81031	broad.mit.edu	37	20	45353692	45353692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:45353692C>T	uc002xsl.2	+	2	114	c.17C>T	c.(16-18)CCT>CTT	p.P6L		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	6	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CACTCCCCACCTGTCCTGCCT	0.413													13	79					0	0	1	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354272	45354272	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:45354272C>T	uc002xsl.2	+	2	694	c.597C>T	c.(595-597)ATC>ATT	p.I199I		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	199	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				AGGACCTCATCCCACTCCAGG	0.622													9	74					0	0	1	0	0
EYA2	2139	broad.mit.edu	37	20	45717903	45717903	+	Silent	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:45717903T>G	uc002xsm.2	+	8	1061	c.687T>G	c.(685-687)CCT>CCG	p.P229P	EYA2_uc010ghp.2_Silent_p.P229P|EYA2_uc002xsn.2_Silent_p.P234P|EYA2_uc002xso.2_Silent_p.P229P|EYA2_uc002xsp.2_Silent_p.P229P|EYA2_uc002xsq.2_Silent_p.P229P	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	229					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				ACAATGGACCTTCCACACCAG	0.582													6	83					0	0	1	0	0
EYA2	2139	broad.mit.edu	37	20	45717955	45717956	+	Missense_Mutation	DNP	GG	AA	AA	rs139367894		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:45717955_45717956GG>AA	uc002xsm.2	+	8	1113_1114	c.739_740GG>AA	c.(739-741)GGG>AAG	p.G247K	EYA2_uc010ghp.2_Missense_Mutation_p.G247K|EYA2_uc002xsn.2_Missense_Mutation_p.G252K|EYA2_uc002xso.2_Missense_Mutation_p.G247K|EYA2_uc002xsp.2_Missense_Mutation_p.G247K|EYA2_uc002xsq.2_Missense_Mutation_p.G247K	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	247					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				GGCCTCCGACGGGAAGCTCCGA	0.579													10	76					0	0	1	0	0
ZMYND8	23613	broad.mit.edu	37	20	45878181	45878181	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:45878181G>A	uc002xta.1	-	13	1818	c.1564C>T	c.(1564-1566)CGA>TGA	p.R522*	ZMYND8_uc010ghq.1_Nonsense_Mutation_p.R199*|ZMYND8_uc010ghr.1_Nonsense_Mutation_p.R497*|ZMYND8_uc002xst.1_Nonsense_Mutation_p.R450*|ZMYND8_uc002xsu.1_Nonsense_Mutation_p.R522*|ZMYND8_uc002xsv.1_Nonsense_Mutation_p.R450*|ZMYND8_uc002xsw.1_Nonsense_Mutation_p.R274*|ZMYND8_uc002xsx.1_Nonsense_Mutation_p.R274*|ZMYND8_uc002xsy.1_Nonsense_Mutation_p.R497*|ZMYND8_uc002xsz.1_Nonsense_Mutation_p.R459*|ZMYND8_uc010zxy.1_Nonsense_Mutation_p.R549*|ZMYND8_uc002xtb.1_Nonsense_Mutation_p.R542*|ZMYND8_uc002xss.2_Nonsense_Mutation_p.R522*|ZMYND8_uc010zxz.1_Nonsense_Mutation_p.R517*|ZMYND8_uc002xtc.1_Nonsense_Mutation_p.R542*|ZMYND8_uc002xtd.1_Nonsense_Mutation_p.R517*|ZMYND8_uc002xte.1_Nonsense_Mutation_p.R522*|ZMYND8_uc010zya.1_Nonsense_Mutation_p.R522*|ZMYND8_uc002xtf.1_Nonsense_Mutation_p.R542*|ZMYND8_uc002xtg.2_Nonsense_Mutation_p.R516*|ZMYND8_uc010ghs.1_Nonsense_Mutation_p.R516*	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	522							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			GCTTTGCTTCGATCTGAAAGA	0.502													12	51					0	0	1	0	0
ZMYND8	23613	broad.mit.edu	37	20	45923453	45923453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:45923453G>A	uc002xta.1	-	5	718	c.464C>T	c.(463-465)TCC>TTC	p.S155F	ZMYND8_uc010ghr.1_Missense_Mutation_p.S130F|ZMYND8_uc002xst.1_Missense_Mutation_p.S130F|ZMYND8_uc002xsu.1_Missense_Mutation_p.S155F|ZMYND8_uc002xsv.1_Missense_Mutation_p.S130F|ZMYND8_uc002xsw.1_5'UTR|ZMYND8_uc002xsx.1_5'UTR|ZMYND8_uc002xsy.1_Missense_Mutation_p.S130F|ZMYND8_uc002xsz.1_Intron|ZMYND8_uc010zxy.1_Missense_Mutation_p.S182F|ZMYND8_uc002xtb.1_Missense_Mutation_p.S175F|ZMYND8_uc002xss.2_Missense_Mutation_p.S155F|ZMYND8_uc010zxz.1_Missense_Mutation_p.S150F|ZMYND8_uc002xtc.1_Missense_Mutation_p.S175F|ZMYND8_uc002xtd.1_Missense_Mutation_p.S150F|ZMYND8_uc002xte.1_Missense_Mutation_p.S155F|ZMYND8_uc010zya.1_Missense_Mutation_p.S155F|ZMYND8_uc002xtf.1_Missense_Mutation_p.S175F|ZMYND8_uc002xtg.2_Missense_Mutation_p.S149F|ZMYND8_uc010ghs.1_Missense_Mutation_p.S149F	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	155							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			GAGCAGGTAGGATAACTGTTC	0.398													6	83					0	0	1	0	0
SULF2	55959	broad.mit.edu	37	20	46365616	46365616	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:46365616G>A	uc002xto.2	-	3	576	c.246C>T	c.(244-246)TTC>TTT	p.F82F	SULF2_uc002xtr.2_Silent_p.F82F|SULF2_uc002xtq.2_Silent_p.F82F|SULF2_uc010ghv.1_Silent_p.F82F	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	82					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						GTGTGGTCACGAAGGCGTTGA	0.582													10	44					0	0	1	0	0
PREX1	57580	broad.mit.edu	37	20	47249068	47249068	+	Silent	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:47249068G>T	uc002xtw.1	-	34	4400	c.4377C>A	c.(4375-4377)GCC>GCA	p.A1459A	PREX1_uc002xtv.1_Silent_p.A756A	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	1459					actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			GCCTCAGGCTGGCCCCACCCT	0.652													11	40					3.07112e-06	3.10993e-06	1	1	0
PREX1	57580	broad.mit.edu	37	20	47309289	47309289	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:47309289G>A	uc002xtw.1	-	8	980	c.957C>T	c.(955-957)TCC>TCT	p.S319S		NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	319	PH.				actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			AGCCGTTGATGGATTTGGTCC	0.517													10	92					0	0	1	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47612360	47612360	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:47612360C>T	uc002xtx.3	+	23	3314	c.3162C>T	c.(3160-3162)GCC>GCT	p.A1054A	ARFGEF2_uc010zyf.1_Silent_p.A347A	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1054					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			GACAGATGGCCAGCTTCCAAG	0.438													11	119					0	0	1	0	0
DDX27	55661	broad.mit.edu	37	20	47846798	47846798	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:47846798A>C	uc002xuh.2	+	9	1097	c.1036A>C	c.(1036-1038)ACC>CCC	p.T346P		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	346	Helicase ATP-binding.					nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CCTCATCGCCACCCCAGGCCG	0.617													3	60					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	47990955	47990955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:47990955C>T	uc002xur.1	-	2	1306	c.1142G>A	c.(1141-1143)GGA>GAA	p.G381E	KCNB1_uc002xus.1_Missense_Mutation_p.G381E	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	381	Selectivity filter (By similarity).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GTAGATGTCTCCATACCCAAC	0.512													6	44					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	47991122	47991122	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:47991122C>T	uc002xur.1	-	2	1139	c.975G>A	c.(973-975)CGG>CGA	p.R325R	KCNB1_uc002xus.1_Silent_p.R325R	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	325	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TGTAGCTCCTCCGCAAAGTGA	0.542													4	28					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	47991175	47991175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:47991175G>A	uc002xur.1	-	2	1086	c.922C>T	c.(922-924)CTT>TTT	p.L308F	KCNB1_uc002xus.1_Missense_Mutation_p.L308F	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	308	Helical; Voltage-sensor; Name=Segment S4; (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GCAAGCTTAAGGATGCGGAGA	0.547													5	58					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	47991182	47991182	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:47991182G>A	uc002xur.1	-	2	1079	c.915C>T	c.(913-915)CTC>CTT	p.L305L	KCNB1_uc002xus.1_Silent_p.L305L	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	305	Helical; Voltage-sensor; Name=Segment S4; (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TAAGGATGCGGAGAATTCGCA	0.532													7	63					0	0	1	0	0
KCNG1	3755	broad.mit.edu	37	20	49626408	49626408	+	Silent	SNP	G	A	A	rs147442458		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:49626408G>A	uc002xwa.3	-	2	763	c.468C>T	c.(466-468)ATC>ATT	p.I156I	KCNG1_uc002xwb.2_Silent_p.I156I	NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	156	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						GGTCCTCCGCGATGCCCCAGT	0.662													5	81					0	0	1	0	0
NFATC2	4773	broad.mit.edu	37	20	50049127	50049127	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:50049127C>T	uc002xwd.2	-	9	2419	c.2199G>A	c.(2197-2199)ACG>ACA	p.T733T	NFATC2_uc002xwc.2_Silent_p.T733T|NFATC2_uc010zyv.1_Silent_p.T514T|NFATC2_uc010zyw.1_Silent_p.T514T|NFATC2_uc010zyx.1_Silent_p.T713T|NFATC2_uc010zyy.1_Silent_p.T514T|NFATC2_uc010zyz.1_Silent_p.T514T|NFATC2_uc002xwe.2_Silent_p.T713T	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	733					B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					ATGAGAGCCCCGTGCGGAACT	0.682													6	38					0	0	1	0	0
NFATC2	4773	broad.mit.edu	37	20	50139938	50139938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:50139938G>A	uc002xwd.2	-	2	1062	c.842C>T	c.(841-843)TCT>TTT	p.S281F	NFATC2_uc002xwc.2_Missense_Mutation_p.S281F|NFATC2_uc010zyv.1_Missense_Mutation_p.S62F|NFATC2_uc010zyw.1_Missense_Mutation_p.S62F|NFATC2_uc010zyx.1_Missense_Mutation_p.S261F|NFATC2_uc010zyy.1_Missense_Mutation_p.S62F|NFATC2_uc010zyz.1_Missense_Mutation_p.S62F|NFATC2_uc002xwe.2_Missense_Mutation_p.S261F	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	281	3 X approximate SP repeats.|3; approximate.				B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					TGCCACGTGAGATGAGGGCTG	0.716													6	22					0	0	1	0	0
NFATC2	4773	broad.mit.edu	37	20	50140003	50140003	+	Silent	SNP	G	A	A	rs6096459		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:50140003G>A	uc002xwd.2	-	2	997	c.777C>T	c.(775-777)GCC>GCT	p.A259A	NFATC2_uc002xwc.2_Silent_p.A259A|NFATC2_uc010zyv.1_Silent_p.A40A|NFATC2_uc010zyw.1_Silent_p.A40A|NFATC2_uc010zyx.1_Silent_p.A239A|NFATC2_uc010zyy.1_Silent_p.A40A|NFATC2_uc010zyz.1_Silent_p.A40A|NFATC2_uc002xwe.2_Silent_p.A239A	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	259	3 X approximate SP repeats.				B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					GGGCAACCAAGGCCTCGGCGC	0.751													8	45					0	0	1	0	0
NFATC2	4773	broad.mit.edu	37	20	50140113	50140113	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:50140113G>A	uc002xwd.2	-	2	887	c.667C>T	c.(667-669)CGA>TGA	p.R223*	NFATC2_uc002xwc.2_Nonsense_Mutation_p.R223*|NFATC2_uc010zyv.1_Nonsense_Mutation_p.R4*|NFATC2_uc010zyw.1_Nonsense_Mutation_p.R4*|NFATC2_uc010zyx.1_Nonsense_Mutation_p.R203*|NFATC2_uc010zyy.1_Nonsense_Mutation_p.R4*|NFATC2_uc010zyz.1_Nonsense_Mutation_p.R4*|NFATC2_uc002xwe.2_Nonsense_Mutation_p.R203*	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	223	3 X approximate SP repeats.|2.				B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					AGGCTGGTTCGAGGTGACATT	0.647													11	171					0	0	1	0	0
ATP9A	10079	broad.mit.edu	37	20	50346491	50346491	+	Missense_Mutation	SNP	C	T	T	rs142435125	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:50346491C>T	uc002xwg.1	-	2	95	c.95G>A	c.(94-96)GGT>GAT	p.G32D	ATP9A_uc010gih.1_Missense_Mutation_p.G17D	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	32	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						CTCCCCTCCACCGCAGCATCT	0.597													18	111					0	0	1	0	0
SALL4	57167	broad.mit.edu	37	20	50406836	50406836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:50406836G>A	uc002xwh.3	-	2	2287	c.2186C>T	c.(2185-2187)TCC>TTC	p.S729F	SALL4_uc010gii.2_Intron|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	729					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GGCATCTAAGGAAGCCATCAT	0.612													9	51					0	0	1	0	0
SALL4	57167	broad.mit.edu	37	20	50407222	50407222	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:50407222G>A	uc002xwh.3	-	2	1901	c.1800C>T	c.(1798-1800)GGC>GGT	p.G600G	SALL4_uc010gii.2_Intron|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	600	C2H2-type 4.				transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AAAAGGCTCGGCCACAGATCT	0.517													4	57					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870456	51870456	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:51870456G>A	uc002xwo.2	+	2	1415	c.459G>A	c.(457-459)AGG>AGA	p.R153R		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	153					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GTGAGAGGAGGAACTGTGACA	0.522													7	62					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872921	51872921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:51872921C>T	uc002xwo.2	+	2	3880	c.2924C>T	c.(2923-2925)TCG>TTG	p.S975L		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	975					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TCCCGGGTATCGTCGGCTCAG	0.493													5	42					0	0	1	0	0
BCAS1	8537	broad.mit.edu	37	20	52601914	52601914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:52601914G>A	uc002xws.2	-	7	1390	c.1052C>T	c.(1051-1053)TCC>TTC	p.S351F	BCAS1_uc010zza.1_Missense_Mutation_p.S109F|BCAS1_uc010zzb.1_Missense_Mutation_p.S299F|BCAS1_uc010gim.2_Missense_Mutation_p.S299F|BCAS1_uc002xwt.2_Missense_Mutation_p.S351F|BCAS1_uc010gil.1_Missense_Mutation_p.S351F	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	351						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			GGTTGTCACGGACTGTGTGTG	0.517													5	34					0	0	1	0	0
DOK5	55816	broad.mit.edu	37	20	53208205	53208205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:53208205G>A	uc002xwy.2	+	5	680	c.460G>A	c.(460-462)GAA>AAA	p.E154K	DOK5_uc010gin.2_Missense_Mutation_p.E46K|DOK5_uc002xwz.2_Intron	NM_018431	NP_060901	Q9P104	DOK5_HUMAN	docking protein 5	154	IRS-type PTB.						insulin receptor binding			ovary(1)	1			Colorectal(105;0.202)			TGTACATGGCGAATGTGCCTT	0.438													12	78					0	0	1	0	0
MC3R	4159	broad.mit.edu	37	20	54824203	54824203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:54824203C>T	uc002xxb.2	+	1	416	c.304C>T	c.(304-306)CAC>TAC	p.H102Y		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	139	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			CGCCATCGTCCACAGCGACTA	0.557													8	34					0	0	1	0	0
MC3R	4159	broad.mit.edu	37	20	54824439	54824439	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:54824439C>T	uc002xxb.2	+	1	652	c.540C>T	c.(538-540)ATC>ATT	p.I180I		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	217	Helical; Name=4; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			TGGTGTTCATCGTCTACTCGG	0.557													16	62					0	0	1	0	0
C20orf43	51507	broad.mit.edu	37	20	55093181	55093181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:55093181C>T	uc002xxt.2	+	9	888	c.781C>T	c.(781-783)CCG>TCG	p.P261S	C20orf43_uc010zzf.1_Missense_Mutation_p.P291S|C20orf43_uc002xxu.2_Missense_Mutation_p.P260S|C20orf43_uc002xxv.2_3'UTR|GCNT7_uc010zzg.1_Intron	NM_016407	NP_057491	Q9BY42	CT043_HUMAN	hypothetical protein LOC51507	261										ovary(1)	1			Colorectal(105;0.202)			TGGGAAGCCTCCGTGTGGAGC	0.498													9	60					0	0	1	0	0
BMP7	655	broad.mit.edu	37	20	55758908	55758908	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:55758908G>A	uc010gip.1	-	4	1357	c.828C>T	c.(826-828)TTC>TTT	p.F276F	BMP7_uc010giq.1_Intron|BMP7_uc002xyc.2_Silent_p.F276F	NM_001719	NP_001710	P18075	BMP7_HUMAN	bone morphogenetic protein 7 precursor	276					BMP signaling pathway|cartilage development|cellular response to hypoxia|epithelial to mesenchymal transition|growth|mesonephros development|negative regulation of glomerular mesangial cell proliferation|negative regulation of MAP kinase activity|negative regulation of mitosis|negative regulation of neuron differentiation|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of phosphorylation|negative regulation of striated muscle cell apoptosis|negative regulation of transcription, DNA-dependent|ossification|pathway-restricted SMAD protein phosphorylation|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|protein localization to nucleus|regulation of removal of superoxide radicals|SMAD protein signal transduction|steroid hormone mediated signaling pathway|ureteric bud development	extracellular space	cytokine activity|growth factor activity			skin(1)	1	all_lung(29;0.0133)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;2.49e-13)|Epithelial(14;1.74e-08)|all cancers(14;2.05e-07)			AAGCCACCATGAAGGGCTGCT	0.622													8	46					0	0	1	0	0
CTCFL	140690	broad.mit.edu	37	20	56094368	56094368	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:56094368G>A	uc010gix.1	-	3	1482	c.820C>T	c.(820-822)CGT>TGT	p.R274C	CTCFL_uc010giw.1_Missense_Mutation_p.R274C|CTCFL_uc002xym.2_Missense_Mutation_p.R274C|CTCFL_uc010giz.1_5'UTR|CTCFL_uc010giy.1_5'UTR|CTCFL_uc010gja.1_Missense_Mutation_p.R274C|CTCFL_uc010gjb.1_Missense_Mutation_p.R274C|CTCFL_uc010gjc.1_Missense_Mutation_p.R274C|CTCFL_uc010gjd.1_Missense_Mutation_p.R274C|CTCFL_uc010gje.2_Missense_Mutation_p.R274C|CTCFL_uc010gjf.2_Missense_Mutation_p.R69C|CTCFL_uc010gjg.2_Missense_Mutation_p.R6C|CTCFL_uc010gjh.1_Missense_Mutation_p.R274C|CTCFL_uc010gji.1_Missense_Mutation_p.R69C|CTCFL_uc010gjj.1_Missense_Mutation_p.R274C|CTCFL_uc010gjk.1_Missense_Mutation_p.R274C|CTCFL_uc010gjl.1_Missense_Mutation_p.R274C	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	274	C2H2-type 1.				cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			TTCATATGACGATTAAAACTT	0.443													12	70					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56136651	56136651	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:56136651G>A	uc002xyn.3	+	2	347	c.184G>A	c.(184-186)GAA>AAA	p.E62K	PCK1_uc010zzm.1_5'UTR	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	62					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			CCAGATGGAGGAAGAGGGCAT	0.607													15	98					0	0	1	0	0
ZBP1	81030	broad.mit.edu	37	20	56179743	56179743	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:56179743G>A	uc002xyo.2	-	8	1457	c.1176C>T	c.(1174-1176)CTC>CTT	p.L392L	ZBP1_uc010gjm.2_Silent_p.L391L|ZBP1_uc002xyp.2_Silent_p.L317L	NM_030776	NP_110403	Q9H171	ZBP1_HUMAN	Z-DNA binding protein 1 isoform a	392						cytoplasm|nucleus	double-stranded RNA adenosine deaminase activity|left-handed Z-DNA binding|RNA binding			ovary(2)	2	Lung NSC(12;0.000545)|all_lung(29;0.00195)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;7.87e-13)|Epithelial(14;3.26e-09)|all cancers(14;3.62e-08)			GCTTGGGGGTGAGCTTCGAGT	0.552													7	116					0	0	1	0	0
ZBP1	81030	broad.mit.edu	37	20	56191482	56191482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:56191482C>T	uc002xyo.2	-	2	358	c.77G>A	c.(76-78)GGC>GAC	p.G26D	ZBP1_uc010gjm.2_Missense_Mutation_p.G26D|ZBP1_uc002xyp.2_Intron|ZBP1_uc010zzn.1_Missense_Mutation_p.G26D	NM_030776	NP_110403	Q9H171	ZBP1_HUMAN	Z-DNA binding protein 1 isoform a	26	DRADA 1.					cytoplasm|nucleus	double-stranded RNA adenosine deaminase activity|left-handed Z-DNA binding|RNA binding			ovary(2)	2	Lung NSC(12;0.000545)|all_lung(29;0.00195)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;7.87e-13)|Epithelial(14;3.26e-09)|all cancers(14;3.62e-08)			CACCGGGGAGCCAGCCTCTGT	0.577													16	91					0	0	1	0	0
STX16	8675	broad.mit.edu	37	20	57246282	57246282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:57246282C>T	uc002xzi.2	+	7	1456	c.721C>T	c.(721-723)CGC>TGC	p.R241C	STX16_uc010zzq.1_Missense_Mutation_p.R55C|STX16_uc002xzk.2_Missense_Mutation_p.R224C|STX16_uc002xzm.2_Missense_Mutation_p.R237C|STX16_uc002xzj.2_Missense_Mutation_p.R220C|STX16_uc002xzl.2_Missense_Mutation_p.R55C	NM_001001433	NP_001001433	O14662	STX16_HUMAN	syntaxin 16 isoform a	241	t-SNARE coiled-coil homology.|Cytoplasmic (Potential).				intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde transport, endosome to Golgi	Golgi membrane|integral to membrane|microsome|SNARE complex	SNAP receptor activity			ovary(1)	1	all_lung(29;0.0175)		BRCA - Breast invasive adenocarcinoma(13;3.73e-09)|Epithelial(14;8.54e-06)|all cancers(14;6.89e-05)			ACGAGAGATTCGCCAGATTGT	0.483													20	67					0	0	1	0	0
GNAS	2778	broad.mit.edu	37	20	57429085	57429085	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:57429085C>T	uc002xzw.2	+	1	1050	c.765C>T	c.(763-765)TTC>TTT	p.F255F	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			GCAGCCAGTTCGCGGCAGTCG	0.662			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			5	10					0	0	1	0	0
GNAS	2778	broad.mit.edu	37	20	57485864	57485864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:57485864C>T	uc002xzw.2	+	13	3379	c.3094C>T	c.(3094-3096)CGT>TGT	p.R1032C	GNAS_uc002xzt.2_3'UTR|GNAS_uc010gjq.2_Missense_Mutation_p.R330C|GNAS_uc002xzx.2_Missense_Mutation_p.R330C|GNAS_uc010gjr.2_Missense_Mutation_p.R280C|GNAS_uc002xzy.2_Missense_Mutation_p.R315C|GNAS_uc002yaa.2_Missense_Mutation_p.R375C|GNAS_uc010zzt.1_Missense_Mutation_p.R390C|GNAS_uc002yab.2_RNA|GNAS_uc002yad.2_Missense_Mutation_p.R280C|GNAS_uc002yae.2_Missense_Mutation_p.R314C	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	389					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			CATGCACCTTCGTCAGTACGA	0.458			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			7	66					0	0	1	0	0
TUBB1	81027	broad.mit.edu	37	20	57598953	57598953	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:57598953G>A	uc002yak.2	+	4	740	c.471G>A	c.(469-471)GAG>GAA	p.E157E		NM_030773	NP_110400	Q9H4B7	TBB1_HUMAN	beta tubulin 1, class VI	157					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity			ovary(1)	1	all_lung(29;0.00711)		Colorectal(105;0.109)		Colchicine(DB01394)|Docetaxel(DB01248)|Paclitaxel(DB01229)|Vindesine(DB00309)	AGATTAGAGAGGAGTACCCGG	0.592													8	97					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57766084	57766084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:57766084C>T	uc002yan.2	+	1	10	c.10C>T	c.(10-12)CCA>TCA	p.P4S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	4	Pro-rich.					intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AATGGAGGTTCCAGAACCCAC	0.617													9	58					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57766566	57766566	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:57766566G>A	uc002yan.2	+	1	492	c.492G>A	c.(490-492)CGG>CGA	p.R164R		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	164	C2H2-type 1.					intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AGCACATCCGGTCCCACACGG	0.627													13	115					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57829518	57829518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:57829518G>A	uc002yan.2	+	5	4754	c.4754G>A	c.(4753-4755)AGA>AAA	p.R1585K		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1585						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AAGGAAGGGAGACACAAGACG	0.473													7	26					0	0	1	0	0
EDN3	1908	broad.mit.edu	37	20	57876774	57876774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:57876774C>T	uc002yap.2	+	2	731	c.362C>T	c.(361-363)CCC>CTC	p.P121L	EDN3_uc002yao.1_Missense_Mutation_p.P121L|EDN3_uc002yaq.2_Missense_Mutation_p.P121L|EDN3_uc002yar.2_Missense_Mutation_p.P121L|EDN3_uc002yas.2_Missense_Mutation_p.P121L	NM_000114	NP_000105	P14138	EDN3_HUMAN	endothelin 3 isoform 1 preproprotein	121					cell surface receptor linked signaling pathway|inositol phosphate-mediated signaling|neutrophil chemotaxis|peptide hormone secretion|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of leukocyte chemotaxis|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space|soluble fraction	endothelin B receptor binding|hormone activity			skin(1)	1	all_lung(29;0.0115)					ATCAACACTCCCGAGTAAGTC	0.587													4	94					0	0	1	0	0
PHACTR3	116154	broad.mit.edu	37	20	58349515	58349515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:58349515G>A	uc002yau.2	+	7	1611	c.1144G>A	c.(1144-1146)GAG>AAG	p.E382K	PHACTR3_uc002yat.2_Missense_Mutation_p.E379K|PHACTR3_uc010zzw.1_Missense_Mutation_p.E341K|PHACTR3_uc002yav.2_Missense_Mutation_p.E341K|PHACTR3_uc002yaw.2_Missense_Mutation_p.E341K|PHACTR3_uc002yax.2_Missense_Mutation_p.E271K	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	382						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			GTATCAGGACGAGGAGGCGCT	0.498													16	133					0	0	1	0	0
CDH26	60437	broad.mit.edu	37	20	58564129	58564129	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:58564129C>T	uc002ybe.2	+	9	1494	c.1194C>T	c.(1192-1194)CCC>CCT	p.P398P	CDH26_uc002ybf.1_5'UTR|CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	398	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			CCTTTCACCCCCAGAGCTTCA	0.562													29	263					0	0	1	0	0
CDH26	60437	broad.mit.edu	37	20	58564203	58564203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:58564203C>T	uc002ybe.2	+	9	1568	c.1268C>T	c.(1267-1269)CCA>CTA	p.P423L	CDH26_uc002ybf.1_Missense_Mutation_p.P3L|CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	423	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			GCCATGGATCCAGACAGCCAG	0.522													28	263					0	0	1	0	0
CDH4	1002	broad.mit.edu	37	20	60348098	60348098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:60348098C>T	uc002ybn.1	+	4	450	c.436C>T	c.(436-438)CCG>TCG	p.P146S	CDH4_uc002ybp.1_Missense_Mutation_p.P72S	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	146					adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GGACCCCTCTCCGCCTCCGAA	0.602													5	46					0	0	1	0	0
CDH4	1002	broad.mit.edu	37	20	60511930	60511930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:60511930G>A	uc002ybn.1	+	16	2694	c.2680G>A	c.(2680-2682)GAT>AAT	p.D894N	CDH4_uc002ybp.1_Missense_Mutation_p.D820N|uc002ybr.1_5'Flank	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	894	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CCAAGACTACGATTACCTCAA	0.587													13	44					0	0	1	0	0
TAF4	6874	broad.mit.edu	37	20	60589653	60589653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:60589653G>A	uc002ybs.2	-	2	1471	c.1471C>T	c.(1471-1473)CGC>TGC	p.R491C		NM_003185	NP_003176	O00268	TAF4_HUMAN	TBP-associated factor 4	491					interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|pancreas(1)	3	Breast(26;1e-08)		BRCA - Breast invasive adenocarcinoma(19;3.1e-07)			GTGGCAGGGCGAGGCGCCATG	0.647													11	28					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60886036	60886036	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:60886036G>A	uc002ycq.2	-	74	10270	c.10203C>T	c.(10201-10203)TTC>TTT	p.F3401F		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	3401	Laminin G-like 4.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCTGTGCAACGAAGTGGCCAT	0.692													14	45					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60901999	60901999	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:60901999G>A	uc002ycq.2	-	39	5203	c.5136C>T	c.(5134-5136)CTC>CTT	p.L1712L		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1712	Laminin IV type A.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTTCATAACGGAGGGTCCCAC	0.612													11	96					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60902994	60902994	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:60902994G>A	uc002ycq.2	-	36	4792	c.4725C>T	c.(4723-4725)CGC>CGT	p.R1575R		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1575	Laminin EGF-like 14.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGTCACAGGGGCGGCAGCGGG	0.687													6	78					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60921218	60921218	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:60921218G>A	uc002ycq.2	-	10	1403	c.1336C>T	c.(1336-1338)CGA>TGA	p.R446*		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	446	Laminin EGF-like 3.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CAGTAGCATCGACCCGTCAGG	0.657													6	31					0	0	1	0	0
C20orf151	140893	broad.mit.edu	37	20	60987776	60987776	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:60987776T>G	uc002ycw.1	-	13	1937	c.1780A>C	c.(1780-1782)AGC>CGC	p.S594R		NM_080833	NP_543023	Q8NC74	CT151_HUMAN	hypothetical protein LOC140893	594											0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;6.43e-06)			CCGGTCGTGCTCGTAGTGGCC	0.692													4	86					0	0	1	0	0
SLCO4A1	28231	broad.mit.edu	37	20	61296383	61296383	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:61296383C>T	uc002ydb.1	+	6	1424	c.1219C>T	c.(1219-1221)CCC>TCC	p.P407S	SLCO4A1_uc002ydc.1_RNA|LOC100127888_uc002ydd.2_RNA|SLCO4A1_uc002yde.1_5'Flank	NM_016354	NP_057438	Q96BD0	SO4A1_HUMAN	solute carrier organic anion transporter family	407	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(1)	1	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;2.33e-06)			CACGTTCAGCCCCAAGTTCTT	0.567													17	129					0	0	1	0	0
OGFR	11054	broad.mit.edu	37	20	61441003	61441003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:61441003C>T	uc002ydj.2	+	4	421	c.386C>T	c.(385-387)TCC>TTC	p.S129F	OGFR_uc002ydk.2_Missense_Mutation_p.S112F|OGFR_uc002ydl.2_Missense_Mutation_p.S77F	NM_007346	NP_031372	Q9NZT2	OGFR_HUMAN	opioid growth factor receptor	129					regulation of cell growth	cytoplasm|membrane|nucleus	opioid receptor activity				0	Breast(26;3.65e-08)					GACAATCACTCCTACATCCAG	0.612													18	78					0	0	1	0	0
COL9A3	1299	broad.mit.edu	37	20	61452568	61452568	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:61452568G>A	uc002ydm.2	+	6	348	c.345G>A	c.(343-345)GGG>GGA	p.G115G		NM_001853	NP_001844	Q14050	CO9A3_HUMAN	alpha 3 type IX collagen precursor	115	Triple-helical region 3 (COL3).				axon guidance	collagen type IX					0	Breast(26;5.68e-08)					CCGGGCTGGGGGTGAGTATGG	0.627													8	42					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61511407	61511407	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:61511407G>A	uc002ydr.1	-	16	6165	c.5901C>T	c.(5899-5901)TTC>TTT	p.F1967F	DIDO1_uc002yds.1_Silent_p.F1967F	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1967	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TCTGGTCTTCGAACTGCTGAG	0.572													36	248					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61528027	61528027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:61528027G>A	uc002ydr.1	-	7	2174	c.1910C>T	c.(1909-1911)GCC>GTC	p.A637V	DIDO1_uc002yds.1_Missense_Mutation_p.A637V|DIDO1_uc002ydt.1_Missense_Mutation_p.A637V|DIDO1_uc002ydu.1_Missense_Mutation_p.A637V	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	637					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CTTCCTTACGGCTCCCACCAA	0.617													14	81					0	0	1	0	0
SLC17A9	63910	broad.mit.edu	37	20	61595591	61595591	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:61595591C>T	uc002yea.3	+	8	1018	c.834C>T	c.(832-834)TTC>TTT	p.F278F	SLC17A9_uc002ydz.3_Silent_p.F272F|SLC17A9_uc011aap.1_Silent_p.F298F	NM_022082	NP_071365	Q9BYT1	S17A9_HUMAN	vesicular nucleotide transporter SLC17A9	278	Helical; (Potential).				exocytosis|transmembrane transport	integral to membrane	transporter activity			ovary(1)|skin(1)	2						GCTGGATCTTCAACGTGGTTC	0.622													28	298					0	0	1	0	0
YTHDF1	54915	broad.mit.edu	37	20	61845283	61845283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:61845283G>A	uc002yeh.2	-	3	359	c.65C>T	c.(64-66)TCG>TTG	p.S22L		NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	22										ovary(2)	2						CTGATGTAACGAACCATTTTG	0.323													5	48					0	0	1	0	0
COL20A1	57642	broad.mit.edu	37	20	61929359	61929359	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:61929359G>A	uc011aau.1	+	3	280	c.180G>A	c.(178-180)GTG>GTA	p.V60V		NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	60	Fibronectin type-III 1.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					TGGTGCAGGTGAAGCCCATGG	0.667													13	34					0	0	1	0	0
COL20A1	57642	broad.mit.edu	37	20	61941176	61941176	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:61941176C>T	uc011aau.1	+	10	1272	c.1172C>T	c.(1171-1173)TCC>TTC	p.S391F	COL20A1_uc011aav.1_Missense_Mutation_p.S212F	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	391	Fibronectin type-III 2.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					GTGACCTCCTCCAGCATCCGC	0.692											OREG0026127	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	17					0	0	1	0	0
COL20A1	57642	broad.mit.edu	37	20	61943027	61943027	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:61943027G>A	uc011aau.1	+	13	1690	c.1590G>A	c.(1588-1590)AGG>AGA	p.R530R	COL20A1_uc011aav.1_Silent_p.R351R	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	530	Fibronectin type-III 3.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					AACCTGGCAGGGACTATGAGG	0.706													4	36					0	0	1	0	0
CHRNA4	1137	broad.mit.edu	37	20	61981794	61981794	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:61981794G>A	uc002yes.2	-	5	1147	c.969C>T	c.(967-969)ATC>ATT	p.I323I	CHRNA4_uc002yet.1_Silent_p.I147I|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Silent_p.I252I|CHRNA4_uc002yev.1_Silent_p.I147I|CHRNA4_uc010gkf.1_Silent_p.I147I	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	323	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	CGAAGACCGTGATGACGATGG	0.607													13	77					0	0	1	0	0
KCNQ2	3785	broad.mit.edu	37	20	62039877	62039877	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:62039877G>A	uc002yey.1	-	16	1953	c.1776C>T	c.(1774-1776)ATC>ATT	p.I592I	KCNQ2_uc002yez.1_Silent_p.I561I|KCNQ2_uc002yfa.1_Silent_p.I574I|KCNQ2_uc002yfb.1_Silent_p.I564I	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	592	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	CCCGCCCCACGATCTGGTCCA	0.697													4	19					0	0	1	0	0
SRMS	6725	broad.mit.edu	37	20	62178684	62178684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:62178684G>A	uc002yfi.1	-	1	174	c.133C>T	c.(133-135)CCC>TCC	p.P45S		NM_080823	NP_543013	Q9H3Y6	SRMS_HUMAN	src-related kinase lacking C-terminal regulatory	45							ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|lung(1)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			GGCTCGGCGGGGAGCGTGGGC	0.697													3	10					0	0	1	0	0
SRMS	6725	broad.mit.edu	37	20	62178692	62178692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:62178692G>A	uc002yfi.1	-	1	166	c.125C>T	c.(124-126)CCC>CTC	p.P42L		NM_080823	NP_543013	Q9H3Y6	SRMS_HUMAN	src-related kinase lacking C-terminal regulatory	42							ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|lung(1)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			GGGGAGCGTGGGCACTGGGTC	0.697													3	8					0	0	1	0	0
C20orf195	79025	broad.mit.edu	37	20	62187047	62187047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:62187047G>A	uc002yfj.2	+	2	123	c.31G>A	c.(31-33)GAC>AAC	p.D11N	C20orf195_uc002yfk.2_Missense_Mutation_p.D11N	NM_024059	NP_076964	Q9BVV2	CT195_HUMAN	hypothetical protein LOC79025	11											0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			CCTGGGCCTGGACAAGATGAA	0.652													5	25					0	0	1	0	0
PRIC285	85441	broad.mit.edu	37	20	62191963	62191963	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:62191963G>A	uc002yfm.2	-	17	8261	c.7369C>T	c.(7369-7371)CTG>TTG	p.L2457L	PRIC285_uc002yfl.1_Silent_p.L1888L	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	2457					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GCGTGGCCCAGGACACTGGGC	0.632													14	76					0	0	1	0	0
PRIC285	85441	broad.mit.edu	37	20	62196998	62196998	+	Silent	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:62196998A>T	uc002yfm.2	-	9	4069	c.3177T>A	c.(3175-3177)GCT>GCA	p.A1059A	PRIC285_uc002yfl.1_Silent_p.A490A	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	1059	Ala-rich.				cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GCCAGAAGTCAGCCTCTGCAT	0.672													4	41					0	0	1	0	0
PRIC285	85441	broad.mit.edu	37	20	62200346	62200346	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:62200346G>A	uc002yfm.2	-	6	1987	c.1095C>T	c.(1093-1095)ACC>ACT	p.T365T	PRIC285_uc002yfl.1_5'Flank	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	365					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GGCCCCGCAGGGTCAGCCTGG	0.692													5	44					0	0	1	0	0
GMEB2	26205	broad.mit.edu	37	20	62229133	62229133	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:62229133G>A	uc002yfp.1	-	4	917	c.438C>T	c.(436-438)ATC>ATT	p.I146I	GMEB2_uc002yfo.1_Silent_p.I68I|GMEB2_uc002yfq.1_Silent_p.I146I	NM_012384	NP_036516	Q9UKD1	GMEB2_HUMAN	glucocorticoid modulatory element binding	146	SAND.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|metal ion binding				0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;4.79e-09)|all cancers(9;2.76e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(5;0.0114)			CGTTCATGCGGATGGCTCTCT	0.592													7	31					0	0	1	0	0
ZGPAT	84619	broad.mit.edu	37	20	62366600	62366600	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:62366600C>T	uc002ygk.2	+	6	1319	c.1141C>T	c.(1141-1143)CTG>TTG	p.L381L	ZGPAT_uc002ygi.2_Silent_p.L361L|ZGPAT_uc002ygj.2_Silent_p.L361L|ZGPAT_uc010gkk.1_5'UTR|ZGPAT_uc010gkl.1_Silent_p.L361L|ZGPAT_uc002ygm.2_Silent_p.L352L|ZGPAT_uc002ygn.3_RNA|LIME1_uc011abi.1_5'Flank|LIME1_uc002ygp.3_5'Flank	NM_032527	NP_115916	Q8N5A5	ZGPAT_HUMAN	zinc finger, CCCH-type with G patch domain	381					negative regulation of epidermal growth factor receptor activity|negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(38;1.13e-12)|all_epithelial(29;2.64e-14)|Lung NSC(23;4.79e-10)|all_lung(23;1.7e-09)					TGTGGAGACCCTGCAGAAGCA	0.677													4	26					0	0	1	0	0
PRPF6	24148	broad.mit.edu	37	20	62654191	62654191	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:62654191T>G	uc002yho.2	+	13	1897	c.1729T>G	c.(1729-1731)TGG>GGG	p.W577G	PRPF6_uc002yhp.2_Missense_Mutation_p.W577G	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	577	HAT 4.				assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					GAAGAGTGTGTGGCTGCGCGC	0.577													9	53					0	0	1	0	0
MYT1	4661	broad.mit.edu	37	20	62839781	62839781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr20:62839781G>A	uc002yii.2	+	7	1596	c.1232G>A	c.(1231-1233)GGA>GAA	p.G411E	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_Missense_Mutation_p.G43E	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	411					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					CTGGGCCTGGGAGAGCCAGGG	0.652													5	25					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10998311	10998311	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:10998311C>T	uc002yis.1	-	11		c.1942G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTCTGATTTTCCATCACAATC	0.363													8	60					0	0	1	0	0
C21orf99	149992	broad.mit.edu	37	21	14439236	14439236	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:14439236G>A	uc002yja.3	+	10		c.2754G>A				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAAAATTAGGGAAGAATTAGG	0.294													4	8					0	0	1	0	0
RBM11	54033	broad.mit.edu	37	21	15599583	15599583	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:15599583T>G	uc002yjo.3	+	5	857	c.815T>G	c.(814-816)TTC>TGC	p.F272C	RBM11_uc002yjn.3_Missense_Mutation_p.F158C|RBM11_uc002yjp.3_Missense_Mutation_p.F158C	NM_144770	NP_658983	P57052	RBM11_HUMAN	RNA binding motif protein 11	272							nucleotide binding|RNA binding				0				Epithelial(23;0.000314)|COAD - Colon adenocarcinoma(22;0.00242)|Colorectal(24;0.0129)|Lung(58;0.141)		AGCCAAAAGTTCCGAAAGTCT	0.343													3	26					0	0	1	0	0
USP25	29761	broad.mit.edu	37	21	17191061	17191061	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:17191061C>T	uc002yjy.1	+	10	1193	c.976C>T	c.(976-978)CAG>TAG	p.Q326*	USP25_uc011aby.1_Nonsense_Mutation_p.Q326*|USP25_uc002yjz.1_Nonsense_Mutation_p.Q326*|USP25_uc010gla.1_Intron	NM_013396	NP_037528	Q9UHP3	UBP25_HUMAN	ubiquitin specific peptidase 25	326					protein modification process|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)|liver(2)	5				Epithelial(23;7.55e-05)|all cancers(11;0.000429)|COAD - Colon adenocarcinoma(22;0.00543)|OV - Ovarian serous cystadenocarcinoma(11;0.00743)|Colorectal(24;0.0116)|Lung(58;0.0853)|LUSC - Lung squamous cell carcinoma(23;0.0889)		GTACCCACTTCAGGTCAATGG	0.363													6	22					0	0	1	0	0
BTG3	10950	broad.mit.edu	37	21	18977308	18977308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:18977308G>A	uc002ykk.2	-	3	441	c.181C>T	c.(181-183)CGT>TGT	p.R61C	BTG3_uc002ykl.2_Missense_Mutation_p.R61C	NM_006806	NP_006797	Q14201	BTG3_HUMAN	B-cell translocation gene 3 isoform b	61					negative regulation of cell proliferation|negative regulation of mitotic cell cycle	cytoplasm					0				Epithelial(23;0.000283)|all cancers(11;0.0012)|Lung(58;0.0191)|OV - Ovarian serous cystadenocarcinoma(11;0.0206)|COAD - Colon adenocarcinoma(22;0.0315)|LUSC - Lung squamous cell carcinoma(23;0.0703)|Colorectal(24;0.0971)		TTATTGACACGAATACATCTA	0.373													7	13					0	0	1	0	0
CHODL	140578	broad.mit.edu	37	21	19629116	19629116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:19629116G>A	uc002ykv.2	+	2	761	c.370G>A	c.(370-372)GGA>AGA	p.G124R	CHODL_uc002ykr.2_Missense_Mutation_p.G83R|CHODL_uc002yks.2_Missense_Mutation_p.G83R|CHODL_uc002ykt.2_Missense_Mutation_p.G83R|CHODL_uc002yku.2_Missense_Mutation_p.G83R	NM_024944	NP_079220	Q9H9P2	CHODL_HUMAN	chondrolectin precursor	124	Extracellular (Potential).|C-type lectin.				muscle organ development	integral to membrane|perinuclear region of cytoplasm	sugar binding			upper_aerodigestive_tract(1)	1		all_epithelial(11;0.21)		Epithelial(23;0.000191)|all cancers(11;0.000827)|LUSC - Lung squamous cell carcinoma(23;0.00646)|Lung(58;0.0129)|OV - Ovarian serous cystadenocarcinoma(11;0.017)|COAD - Colon adenocarcinoma(22;0.03)|Colorectal(24;0.0917)		GTGGTCTGATGGAAGCAATTC	0.517													5	26					0	0	1	0	0
NCAM2	4685	broad.mit.edu	37	21	22696803	22696803	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:22696803C>T	uc002yld.1	+	6	969	c.720C>T	c.(718-720)CCC>CCT	p.P240P	NCAM2_uc011acb.1_Silent_p.P98P|NCAM2_uc011acc.1_Silent_p.P265P	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	240	Ig-like C2-type 3.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		CTCCAGAACCCGCCATCTCCT	0.493													3	18					0	0	1	0	0
JAM2	58494	broad.mit.edu	37	21	27066148	27066148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:27066148C>T	uc002ylp.1	+	4	867	c.322C>T	c.(322-324)CGT>TGT	p.R108C	JAM2_uc011ace.1_Missense_Mutation_p.R108C|JAM2_uc002ylq.1_RNA|JAM2_uc011acf.1_Missense_Mutation_p.R72C|JAM2_uc010glh.1_RNA|JAM2_uc002ylr.1_Missense_Mutation_p.R108C|JAM2_uc010gli.1_Missense_Mutation_p.R108C	NM_021219	NP_067042	P57087	JAM2_HUMAN	junctional adhesion molecule 2 precursor	108	Ig-like V-type.|Extracellular (Potential).				blood coagulation|cell-cell adhesion|leukocyte migration	integral to plasma membrane|tight junction					0						GGGGAAATATCGTTGTGAAGT	0.403													4	67					0	0	1	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28296662	28296662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:28296662G>A	uc002ymg.2	-	8	3232	c.2503C>T	c.(2503-2505)CTT>TTT	p.L835F		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	835	Spacer.				proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						TCTGTTGCAAGAATCTGCACT	0.453													4	77					0	0	1	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28296747	28296747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:28296747C>T	uc002ymg.2	-	8	3147	c.2418G>A	c.(2416-2418)ATG>ATA	p.M806I		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	806	Spacer.				proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						CGCTATAGTTCATGACTGTTC	0.443													9	85					0	0	1	0	0
KRTAP26-1	388818	broad.mit.edu	37	21	31691921	31691921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:31691921G>A	uc002ynw.2	-	1	687	c.433C>T	c.(433-435)CCC>TCC	p.P145S		NM_203405	NP_981950	Q6PEX3	KR261_HUMAN	keratin associated protein 26-1	145						intermediate filament				ovary(1)	1						CAGAATTGGGGGCGATAGGCA	0.552													5	42					0	0	1	0	0
KRTAP13-3	337960	broad.mit.edu	37	21	31797893	31797893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:31797893C>T	uc002yob.1	-	1	338	c.338G>A	c.(337-339)GGA>GAA	p.G113E		NM_181622	NP_853653	Q3SY46	KR133_HUMAN	keratin associated protein 13-3	113						intermediate filament				ovary(1)|lung(1)	2						GCTCCTGGATCCACAGCTCAG	0.502													5	16					0	0	1	0	0
KRTAP19-3	337970	broad.mit.edu	37	21	31864179	31864180	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:31864179_31864180GG>AA	uc002yog.1	-	1	96_97	c.96_97CC>TT	c.(94-99)TTCCGC>TTTTGC	p.R33C		NM_181609	NP_853640	Q7Z4W3	KR193_HUMAN	keratin associated protein 19-3	33						intermediate filament					0						CCCAGTCTGCGGAAGCTGCCAC	0.579													12	134					0	0	1	0	0
KRTAP11-1	337880	broad.mit.edu	37	21	32253682	32253682	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:32253682G>A	uc002yov.2	-	1	193	c.162C>T	c.(160-162)GAC>GAT	p.D54D		NM_175858	NP_787054	Q8IUC1	KR111_HUMAN	keratin associated protein 11-1	54						keratin filament	structural molecule activity			pancreas(1)	1						CTTGACAGTGGTCCAGGAGCC	0.577													10	26					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32502582	32502582	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:32502582G>A	uc002yow.1	-	26	4466	c.3994C>T	c.(3994-3996)CGA>TGA	p.R1332*	TIAM1_uc011adk.1_Nonsense_Mutation_p.R1332*|TIAM1_uc011adl.1_Nonsense_Mutation_p.R1272*	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1332	PH 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						ATCATGTGTCGAAATCTGAAG	0.507													11	128					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32513814	32513814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:32513814C>T	uc002yow.1	-	22	3956	c.3484G>A	c.(3484-3486)GAC>AAC	p.D1162N	TIAM1_uc011adk.1_Missense_Mutation_p.D1162N|TIAM1_uc011adl.1_Missense_Mutation_p.D1102N	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1162	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						AAAGCCGTGTCTGTCTTGGCT	0.562													23	88					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32598135	32598135	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:32598135C>T	uc002yow.1	-	8	2188	c.1716G>A	c.(1714-1716)CAG>CAA	p.Q572Q	TIAM1_uc011adk.1_Silent_p.Q572Q|TIAM1_uc011adl.1_Silent_p.Q572Q|TIAM1_uc002yox.1_Silent_p.Q180Q	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	572					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						TGTCAATCTTCTGTTCCAGTT	0.463													5	98					0	0	1	0	0
SON	6651	broad.mit.edu	37	21	34924400	34924400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:34924400C>T	uc002yse.1	+	3	2912	c.2863C>T	c.(2863-2865)CCC>TCC	p.P955S	SON_uc002ysb.1_Missense_Mutation_p.P955S|SON_uc002ysc.2_Missense_Mutation_p.P955S|SON_uc002ysd.2_Intron|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	955	11 X 7 AA tandem repeats of [DR]-P-Y-R- [LI][AG][QHP].				anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						AGGCCATGATCCCTACAGACT	0.483													5	72					0	0	1	0	0
ATP5O	539	broad.mit.edu	37	21	35284673	35284673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:35284673G>A	uc002ytl.2	-	3	209	c.118C>T	c.(118-120)CGC>TGC	p.R40C	DONSON_uc002ysn.1_5'UTR|ATP5O_uc002ytm.1_RNA	NM_001697	NP_001688	P48047	ATPO_HUMAN	mitochondrial ATP synthase, O subunit precursor	40					ATP catabolic process|mitochondrial ATP synthesis coupled proton transport|respiratory electron transport chain	mitochondrial proton-transporting ATP synthase complex|plasma membrane|proton-transporting ATP synthase complex, catalytic core F(1)	drug binding|hydrogen ion transporting ATP synthase activity, rotational mechanism			ovary(1)	1						GTGGCATAGCGACCTTCAATA	0.383													4	58					0	0	1	0	0
DOPEY2	9980	broad.mit.edu	37	21	37603235	37603235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:37603235C>T	uc002yvg.2	+	14	2232	c.2153C>T	c.(2152-2154)TCG>TTG	p.S718L	DOPEY2_uc011aeb.1_Missense_Mutation_p.S718L	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	718					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						CCATCGTCTTCGCCCAGCAGC	0.552													6	31					0	0	1	0	0
CLDN14	23562	broad.mit.edu	37	21	37833374	37833374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:37833374G>A	uc002yvk.1	-	2	762	c.620C>T	c.(619-621)ACC>ATC	p.T207I	CLDN14_uc002yvn.1_Missense_Mutation_p.T207I|CLDN14_uc002yvo.1_Missense_Mutation_p.T207I|CLDN14_uc002yvl.1_Missense_Mutation_p.T207I|CLDN14_uc002yvm.1_Missense_Mutation_p.T207I	NM_012130	NP_036262	O95500	CLD14_HUMAN	claudin 14	207	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|protein complex assembly|tight junction assembly	endoplasmic reticulum|integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GGCAGGTGCGGTGTTTGCAGT	0.647													5	89					0	0	1	0	0
CLDN14	23562	broad.mit.edu	37	21	37833692	37833692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:37833692C>T	uc002yvk.1	-	2	444	c.302G>A	c.(301-303)GGG>GAG	p.G101E	CLDN14_uc002yvn.1_Missense_Mutation_p.G101E|CLDN14_uc002yvo.1_Missense_Mutation_p.G101E|CLDN14_uc002yvl.1_Missense_Mutation_p.G101E|CLDN14_uc002yvm.1_Missense_Mutation_p.G101E	NM_012130	NP_036262	O95500	CLD14_HUMAN	claudin 14	101	Helical; (Potential).				calcium-independent cell-cell adhesion|protein complex assembly|tight junction assembly	endoplasmic reticulum|integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GCACTTCATCCCGATGACGGC	0.682													10	63					0	0	1	0	0
KCNJ6	3763	broad.mit.edu	37	21	39087194	39087194	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:39087194C>T	uc011aej.1	-	3	319	c.266G>A	c.(265-267)TGG>TAG	p.W89*	KCNJ6_uc002ywo.2_Nonsense_Mutation_p.W89*	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	89	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	GTTGAATCTCCACTTCAGGTC	0.463													18	76					0	0	1	0	0
HMGN1	3150	broad.mit.edu	37	21	40717139	40717139	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:40717139G>A	uc002yxo.2	-	5	392	c.188C>T	c.(187-189)GCC>GTC	p.A63V	HMGN1_uc002yxp.2_Missense_Mutation_p.P27S|HMGN1_uc002yxq.2_Missense_Mutation_p.P27S|HMGN1_uc002yxr.2_RNA	NM_004965	NP_004956	P05114	HMGN1_HUMAN	high-mobility group nucleosome binding domain 1	63					positive regulation of transcription elongation, DNA-dependent	chromatin|cytoplasm|nucleus	DNA binding			breast(1)	1		Prostate(19;8.69e-07)				AGCCACTTCGGCCTGTTTTCC	0.338													3	16					0	0	1	0	0
LCA5L	150082	broad.mit.edu	37	21	40795084	40795084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:40795084C>T	uc002yxu.2	-	5	968	c.655G>A	c.(655-657)GAA>AAA	p.E219K	LCA5L_uc002yxv.2_Missense_Mutation_p.E219K|LCA5L_uc002yxw.1_Missense_Mutation_p.E219K|LCA5L_uc002yxx.1_Missense_Mutation_p.E81K|LCA5L_uc002yxy.2_RNA	NM_152505	NP_689718	O95447	LCA5L_HUMAN	Leber congenital amaurosis 5-like	219	Potential.										0		Prostate(19;1.2e-06)				CTTTCCTTTTCCTGGGATTTC	0.338													9	39					0	0	1	0	0
SH3BGR	6450	broad.mit.edu	37	21	40883678	40883678	+	Silent	SNP	G	A	A	rs34106220		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:40883678G>A	uc002yya.2	+	6	750	c.696G>A	c.(694-696)GAG>GAA	p.E232E	SH3BGR_uc002yxz.2_Silent_p.E121E	NM_007341	NP_031367	P55822	SH3BG_HUMAN	SH3-binding domain and glutamic acid-rich	232	Glu-rich (acidic).				protein complex assembly	cytosol	SH3 domain binding|SH3/SH2 adaptor activity				0		all_cancers(19;1.16e-23)|all_epithelial(19;1.22e-20)|Prostate(19;2.55e-06)|Breast(209;0.0133)		STAD - Stomach adenocarcinoma(101;0.00151)		AAGGAGAAGAGCCTGGAGAAG	0.463													20	59					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41465739	41465739	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:41465739C>T	uc002yyq.1	-	21	4211	c.3759G>A	c.(3757-3759)AGG>AGA	p.R1253R	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1253	Fibronectin type-III 4.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ACTGACGATTCCTACTCAGGT	0.488													3	14					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	42080489	42080489	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:42080489G>A	uc002yyq.1	-	2	704	c.252C>T	c.(250-252)TTC>TTT	p.F84F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	84	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GAGGGAAGGGGAAAATTTGGA	0.498													19	58					0	0	1	0	0
FAM3B	54097	broad.mit.edu	37	21	42694972	42694973	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:42694972_42694973GG>AA	uc002yzb.1	+	2	288_289	c.142_143GG>AA	c.(142-144)GGG>AAG	p.G48K	FAM3B_uc002yza.2_RNA|FAM3B_uc002yzc.1_Intron|FAM3B_uc002yzd.1_Missense_Mutation_p.G71K|FAM3B_uc011aeq.1_Missense_Mutation_p.G62K	NM_058186	NP_478066	P58499	FAM3B_HUMAN	family with sequence similarity 3, member B	48					apoptosis|insulin secretion	extracellular space	cytokine activity				0		Prostate(19;1.57e-07)|all_epithelial(19;0.0404)				CCGCAGCATCGGGGAGAGGCCT	0.609													8	52					0	0	1	0	0
MX1	4599	broad.mit.edu	37	21	42811672	42811673	+	Missense_Mutation	DNP	CC	TT	TT	rs143467494	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:42811672_42811673CC>TT	uc002yzh.2	+	10	1435_1436	c.488_489CC>TT	c.(487-489)ACC>ATT	p.T163I	MX1_uc002yzi.2_Missense_Mutation_p.T163I|MX1_uc010goq.2_Missense_Mutation_p.T163I	NM_001144925	NP_001138397	P20591	MX1_HUMAN	myxovirus resistance protein 1	163					induction of apoptosis|response to virus|type I interferon-mediated signaling pathway	cytosol	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(19;3.18e-07)|all_epithelial(19;0.0277)				GAGCTAATCACCCTGGAGATCA	0.5													5	87					0	0	1	0	0
TMPRSS2	7113	broad.mit.edu	37	21	42839758	42839758	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:42839758C>T	uc002yzj.2	-	13	1504	c.1370G>A	c.(1369-1371)GGG>GAG	p.G457E	TMPRSS2_uc010gor.2_Missense_Mutation_p.G494E|TMPRSS2_uc010gos.1_Missense_Mutation_p.G457E	NM_005656	NP_005647	O15393	TMPS2_HUMAN	transmembrane protease, serine 2 isoform 2	457	Peptidase S1.|Extracellular (Potential).				proteolysis	cytoplasm|extracellular region|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity		TMPRSS2/ERG(2499)|TMPRSS2/ETV1(24)	prostate(2523)|central_nervous_system(1)	2524		Prostate(19;4.48e-07)|all_epithelial(19;0.031)				GCTTGTATCCCCTATCAGCCA	0.498			T	ERG|ETV1|ETV4|ETV5	prostate 								7	65					0	0	1	0	0
TMPRSS2	7113	broad.mit.edu	37	21	42860341	42860341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:42860341C>T	uc002yzj.2	-	5	559	c.425G>A	c.(424-426)GGG>GAG	p.G142E	TMPRSS2_uc010gor.2_Missense_Mutation_p.G179E|TMPRSS2_uc010gos.1_Missense_Mutation_p.G142E	NM_005656	NP_005647	O15393	TMPS2_HUMAN	transmembrane protease, serine 2 isoform 2	142	Extracellular (Potential).|LDL-receptor class A.				proteolysis	cytoplasm|extracellular region|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity		TMPRSS2/ERG(2499)|TMPRSS2/ETV1(24)	prostate(2523)|central_nervous_system(1)	2524		Prostate(19;4.48e-07)|all_epithelial(19;0.031)				CTCGTCCTCCCCGCCGGGGCA	0.612			T	ERG|ETV1|ETV4|ETV5	prostate 								9	39					0	0	1	0	0
RIPK4	54101	broad.mit.edu	37	21	43176851	43176851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:43176851G>A	uc002yzn.1	-	2	356	c.308C>T	c.(307-309)TCC>TTC	p.S103F		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	103						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity	p.S103F(1)		ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						CTTTTCCAGGGAGCCCGTCTC	0.587													4	44					0	0	1	0	0
ABCG1	9619	broad.mit.edu	37	21	43714762	43714762	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:43714762C>T	uc002zaq.2	+	14	1906	c.1800C>T	c.(1798-1800)TCC>TCT	p.S600S	ABCG1_uc002zan.2_Silent_p.S590S|ABCG1_uc002zam.2_Silent_p.S566S|ABCG1_uc002zao.2_Silent_p.S585S|ABCG1_uc002zap.2_Silent_p.S588S|ABCG1_uc002zar.2_Silent_p.S599S|ABCG1_uc011aev.1_Silent_p.S611S|ABCG1_uc010gpb.1_Silent_p.L241L	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	600	ABC transmembrane type-2.|Extracellular (Potential).				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	CCTACATCTCCTATGTCAGGT	0.617													6	78					0	0	1	0	0
SIK1	150094	broad.mit.edu	37	21	44841184	44841184	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:44841184G>A	uc002zdf.2	-	6	690	c.563C>T	c.(562-564)CCG>CTG	p.P188L		NM_173354	NP_775490	P57059	SIK1_HUMAN	salt-inducible kinase 1	188	Protein kinase.				anoikis|cell cycle|cell differentiation|intracellular protein kinase cascade|multicellular organismal development|regulation of cell differentiation|regulation of mitotic cell cycle	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(2)|testis(2)|ovary(1)|central_nervous_system(1)|skin(1)	7						GGCGGCATACGGGGGGCTCCC	0.587													8	84					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45774547	45774547	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:45774547C>T	uc002zet.1	+	3	395	c.182C>T	c.(181-183)TCG>TTG	p.S61L	TRPM2_uc002zeu.1_Missense_Mutation_p.S61L|TRPM2_uc002zew.1_Missense_Mutation_p.S61L|TRPM2_uc010gpt.1_Missense_Mutation_p.S61L	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	61	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGCCTCAGTTCGTGGATTCCT	0.458													11	77					0	0	1	0	0
KRTAP10-8	386681	broad.mit.edu	37	21	46032080	46032080	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:46032080C>T	uc002zfo.1	+	1	85	c.63C>T	c.(61-63)TCC>TCT	p.S21S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198695	NP_941968	P60410	KR108_HUMAN	keratin associated protein 10-8	21						keratin filament				large_intestine(1)|breast(1)	2						CTGTCTGCTCCAGTGACGTGG	0.622													28	90					0	0	1	0	0
KRTAP10-8	386681	broad.mit.edu	37	21	46032628	46032628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:46032628G>A	uc002zfo.1	+	1	633	c.611G>A	c.(610-612)AGA>AAA	p.R204K	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198695	NP_941968	P60410	KR108_HUMAN	keratin associated protein 10-8	204	16.|19 X 5 AA repeats of C-C-X(3).					keratin filament				large_intestine(1)|breast(1)	2						TCCTGCTGCAGACCCTCCTCC	0.393													13	127					0	0	1	0	0
KRTAP10-9	386676	broad.mit.edu	37	21	46047129	46047129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:46047129C>T	uc002zfp.3	+	1	90	c.41C>T	c.(40-42)TCC>TTC	p.S14F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198690	NP_941963	P60411	KR109_HUMAN	keratin associated protein 10-9	14						keratin filament					0						AGCGCTTACTCCGACTCCTGG	0.612													4	71					0	0	1	0	0
ADARB1	104	broad.mit.edu	37	21	46604915	46604915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:46604915C>T	uc002zgy.2	+	9	2029	c.1594C>T	c.(1594-1596)CCA>TCA	p.P532S	ADARB1_uc002zgr.2_Missense_Mutation_p.P532S|ADARB1_uc002zgs.2_RNA|ADARB1_uc002zgw.2_Missense_Mutation_p.P492S|ADARB1_uc002zgv.2_RNA|ADARB1_uc002zgt.2_Missense_Mutation_p.P492S|ADARB1_uc010gpx.2_RNA|ADARB1_uc002zgq.2_RNA|ADARB1_uc002zgu.2_RNA	NM_015833	NP_056648	P78563	RED1_HUMAN	RNA-specific adenosine deaminase B1 isoform 2	532	A to I editase.				adenosine to inosine editing|mRNA modification|mRNA processing|RNA processing	nucleoplasm|nucleus	double-stranded RNA adenosine deaminase activity|double-stranded RNA adenosine deaminase activity|double-stranded RNA binding|double-stranded RNA binding|metal ion binding|mRNA binding|RNA binding			skin(1)	1				Colorectal(79;0.115)		GGGGACGATTCCAGTGCGCTC	0.527													12	99					0	0	1	0	0
POFUT2	23275	broad.mit.edu	37	21	46705836	46705836	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:46705836G>A	uc002zhc.2	-	2	164	c.139C>T	c.(139-141)CTG>TTG	p.L47L	POFUT2_uc002zhb.2_RNA|POFUT2_uc002zhd.2_Silent_p.L47L|POFUT2_uc011afp.1_Silent_p.L47L|POFUT2_uc011afq.1_Silent_p.L47L|LOC642852_uc002zhf.2_5'Flank	NM_133635	NP_598368	Q9Y2G5	OFUT2_HUMAN	protein O-fucosyltransferase 2 isoform C	47					fucose metabolic process	endoplasmic reticulum	peptide-O-fucosyltransferase activity				0				Colorectal(79;0.243)		ACGTCATACAGAAGATACCTG	0.562													6	87					0	0	1	0	0
PCBP3	54039	broad.mit.edu	37	21	47350754	47350754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:47350754C>T	uc002zhq.1	+	11	976	c.851C>T	c.(850-852)TCA>TTA	p.S284L	PCBP3_uc010gqb.2_Missense_Mutation_p.S284L|PCBP3_uc002zhp.1_Intron|PCBP3_uc002zhs.1_Missense_Mutation_p.S258L|PCBP3_uc002zhr.1_Missense_Mutation_p.S283L|PCBP3_uc002zht.1_Missense_Mutation_p.S274L	NM_020528	NP_065389	P57721	PCBP3_HUMAN	poly(rC) binding protein 3 isoform 1	284					mRNA metabolic process	cytosol|mitochondrion|nucleus|ribonucleoprotein complex	DNA binding|RNA binding			skin(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0411)|READ - Rectum adenocarcinoma(84;0.0649)		atgggccagtcatcaggTAAC	0.294													8	31					0	0	1	0	0
COL6A2	1292	broad.mit.edu	37	21	47545779	47545779	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:47545779C>T	uc002zia.1	+	26	2132	c.2050C>T	c.(2050-2052)CTG>TTG	p.L684L	COL6A2_uc002zhy.1_Silent_p.L684L|COL6A2_uc002zhz.1_Silent_p.L684L|COL6A2_uc002zib.1_Silent_p.L90L|COL6A2_uc002zic.1_5'Flank	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	684	VWFA 2.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		TATCGACTCCCTGTCGAGCTT	0.622													3	34					0	0	1	0	0
MCM3AP	8888	broad.mit.edu	37	21	47704239	47704239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr21:47704239G>A	uc002zir.1	-	1	998	c.962C>T	c.(961-963)CCT>CTT	p.P321L	C21orf57_uc002zit.1_5'Flank|C21orf57_uc002ziu.1_5'Flank|C21orf57_uc002ziv.2_5'Flank|C21orf57_uc002ziw.2_5'Flank|C21orf57_uc002zix.2_5'Flank|C21orf57_uc010gqh.2_5'Flank|C21orf57_uc002ziy.2_5'Flank	NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	321					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					TTTGTCTGGAGGATGATCGCC	0.532													9	128					0	0	1	0	0
POTEH	23784	broad.mit.edu	37	22	16279248	16279248	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:16279248C>T	uc010gqp.2	-	4	1027	c.975G>A	c.(973-975)GTG>GTA	p.V325V	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Silent_p.V44V|POTEH_uc002zlj.1_Silent_p.V160V	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	325	ANK 5.									skin(1)	1						TTAAAAATTTCACCACTTGCT	0.328													8	144					0	0	1	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072850	17072850	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:17072850G>A	uc002zlp.1	-	1	851	c.591C>T	c.(589-591)AGC>AGT	p.S197S		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	197					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CAGGCTTGAAGCTGCCGTCTA	0.617													19	81					0	0	1	0	0
XKR3	150165	broad.mit.edu	37	22	17280821	17280821	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:17280821C>T	uc002zlv.2	-	3	527	c.429G>A	c.(427-429)ACG>ACA	p.T143T	XKR3_uc011agf.1_Silent_p.T143T	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	143						integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				TTTCCAGCATCGTGTTTCTCT	0.403													6	61					0	0	1	0	0
CECR5	27440	broad.mit.edu	37	22	17619441	17619441	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:17619441C>A	uc002zmf.2	-	7	962	c.934G>T	c.(934-936)GGT>TGT	p.G312C	CECR5_uc002zmd.2_Missense_Mutation_p.G123C|CECR5_uc002zme.2_Missense_Mutation_p.G104C|CECR5_uc002zmg.2_Intron|CECR5_uc002zmh.2_Missense_Mutation_p.G282C	NM_033070	NP_149061	Q9BXW7	CECR5_HUMAN	cat eye syndrome chromosome region, candidate 5	312							hydrolase activity				0		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)				AGAGCCTACCCCACAGCATAG	0.572													6	165					1	1	1	1	0
CECR1	51816	broad.mit.edu	37	22	17662831	17662831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:17662831C>T	uc002zmk.1	-	8	1533	c.1321G>A	c.(1321-1323)GAT>AAT	p.D441N	CECR1_uc010gqu.1_Missense_Mutation_p.D441N|CECR1_uc011agi.1_Missense_Mutation_p.D399N|CECR1_uc002zmj.1_Missense_Mutation_p.D200N	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	441		Zinc; catalytic.			adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				GCTGGGTCATCAGAGCTGATC	0.537													4	49					0	0	1	0	0
CECR2	27443	broad.mit.edu	37	22	17976544	17976544	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:17976544C>T	uc010gqw.1	+	2	331	c.205C>T	c.(205-207)CGC>TGC	p.R69C	CECR2_uc010gqv.1_5'UTR|CECR2_uc002zml.2_5'UTR|CECR2_uc002zmm.1_5'Flank	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	111					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		CCTGCCTCTTCGCACACGGGT	0.542													11	88					0	0	1	0	0
TUBA8	51807	broad.mit.edu	37	22	18609438	18609438	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:18609438C>T	uc002znv.1	+	4	766	c.693C>T	c.(691-693)ATC>ATT	p.I231I	TUBA8_uc002znr.2_Silent_p.I165I|TUBA8_uc002znw.1_Silent_p.I255I|TUBA8_uc002znx.1_Silent_p.I78I	NM_018943	NP_061816	Q9NY65	TBA8_HUMAN	tubulin, alpha 8	231					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0						ACCGCCTCATCAGTCAGATTG	0.542													5	104					0	0	1	0	0
TUBA8	51807	broad.mit.edu	37	22	18613675	18613675	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:18613675C>T	uc002znv.1	+	5	1195	c.1122C>T	c.(1120-1122)GCC>GCT	p.A374A	TUBA8_uc002znr.2_Silent_p.A308A|TUBA8_uc002znw.1_Silent_p.A398A|TUBA8_uc002znx.1_Silent_p.A221A	NM_018943	NP_061816	Q9NY65	TBA8_HUMAN	tubulin, alpha 8	374					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0						TGCAGCGGGCCGTCTGCATGC	0.642													6	63					0	0	1	0	0
DGCR14	8220	broad.mit.edu	37	22	19130257	19130258	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:19130257_19130258GG>AA	uc002zou.2	-	2	322_323	c.285_286CC>TT	c.(283-288)TCCCGG>TCTTGG	p.R96W	DGCR14_uc002zot.2_Missense_Mutation_p.R17W|DGCR14_uc002zov.2_RNA	NM_022719	NP_073210	Q96DF8	DGC14_HUMAN	DiGeorge syndrome critical region protein 14	96					nervous system development	catalytic step 2 spliceosome				ovary(1)	1	Colorectal(54;0.0993)					GGGGGCTCCCGGGACATCTTGC	0.584													10	133					0	0	1	0	0
CLTCL1	8218	broad.mit.edu	37	22	19207416	19207416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:19207416G>A	uc002zpb.2	-	18	2972	c.2897C>T	c.(2896-2898)TCC>TTC	p.S966F	CLTCL1_uc011agv.1_Missense_Mutation_p.S966F|CLTCL1_uc011agw.1_Missense_Mutation_p.S966F	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	966	Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					CTGTCTCCTGGATGGGTTGGT	0.527			T	?	ALCL								12	70					0	0	1	0	0
HIRA	7290	broad.mit.edu	37	22	19346936	19346936	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:19346936G>A	uc002zpf.1	-	18	2377	c.2157C>T	c.(2155-2157)AGC>AGT	p.S719S	HIRA_uc011agx.1_Silent_p.S585S|HIRA_uc010grn.1_Intron|HIRA_uc010gro.1_Silent_p.S675S|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	719	Interaction with CCNA1.|Interaction with PAX3 (By similarity).|Interaction with histone H2B.				chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					ACTTCAGGCGGCTCAGCTTCA	0.592													8	42					0	0	1	0	0
CDC45	8318	broad.mit.edu	37	22	19494939	19494939	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:19494939C>T	uc002zpr.2	+	11	931	c.855C>T	c.(853-855)TCC>TCT	p.S285S	CDC45_uc011agz.1_Silent_p.S280S|CDC45_uc011aha.1_Silent_p.S317S|CDC45_uc002zps.2_Silent_p.S285S|CDC45_uc002zpt.2_Silent_p.S239S	NM_003504	NP_003495	O75419	CDC45_HUMAN	CDC45-like	285					DNA replication checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	centrosome|nucleoplasm	protein binding			lung(1)	1						AGCACTGGTCCCTCCATGACA	0.607													21	103					0	0	1	0	0
C22orf29	79680	broad.mit.edu	37	22	19839542	19839542	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:19839542G>A	uc002zqg.2	-	2	842	c.243C>T	c.(241-243)CCC>CCT	p.P81P	GNB1L_uc002zqd.1_Intron|GNB1L_uc002zqe.1_Intron|GNB1L_uc002zqf.1_Intron|C22orf29_uc002zqh.2_Silent_p.P81P|C22orf29_uc002zqi.2_Silent_p.P81P|C22orf29_uc010grt.1_Intron	NM_024627	NP_078903	Q7L3V2	CV029_HUMAN	hypothetical protein LOC79680	81											0	Colorectal(54;0.0993)					GCCCAGCTAGGGGACCCCTTT	0.632													5	64					0	0	1	0	0
DGCR8	54487	broad.mit.edu	37	22	20074197	20074197	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:20074197C>T	uc002zri.2	+	2	1061	c.711C>T	c.(709-711)TTC>TTT	p.F237F	DGCR8_uc010grz.2_Silent_p.F237F|DGCR8_uc002zrj.2_5'Flank	NM_022720	NP_073557	Q8WYQ5	DGCR8_HUMAN	DiGeorge syndrome critical region gene 8	237	Necessary for nuclear localization and retention.|Necessary for interaction with NCL.				primary miRNA processing	cytoplasm|cytoplasm|microtubule cytoskeleton|nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding				0	Colorectal(54;0.0993)					CCTTGAATTTCCCCTACGAGG	0.463													9	146					0	0	1	0	0
SCARF2	91179	broad.mit.edu	37	22	20781762	20781762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:20781762G>A	uc002zsj.1	-	10	1736	c.1631C>T	c.(1630-1632)CCA>CTA	p.P544L	SCARF2_uc002zsk.1_Missense_Mutation_p.P539L	NM_153334	NP_699165	Q96GP6	SREC2_HUMAN	scavenger receptor class F, member 2 isoform 1	539	Cytoplasmic (Potential).				cell adhesion	integral to membrane	protein binding|receptor activity			breast(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			GGACCAGGATGGTGAGGGCTG	0.602													7	82					0	0	1	0	0
PI4KA	5297	broad.mit.edu	37	22	21119942	21119942	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:21119942G>A	uc002zsz.3	-	20	2425	c.2194C>T	c.(2194-2196)CGG>TGG	p.R732W		NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	732					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			TTCTGTAACCGAGGCTTAGCT	0.532													8	72					0	0	1	0	0
AIFM3	150209	broad.mit.edu	37	22	21329051	21329051	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:21329051C>T	uc002ztj.2	+	8	884	c.666C>T	c.(664-666)ATC>ATT	p.I222I	AIFM3_uc002ztk.2_Silent_p.I222I|AIFM3_uc002ztl.2_Silent_p.I228I|AIFM3_uc011ahx.1_Silent_p.I210I|AIFM3_uc002ztm.1_Silent_p.I34I	NM_144704	NP_653305	Q96NN9	AIFM3_HUMAN	apoptosis-inducing factor,	222					activation of caspase activity by cytochrome c|cell redox homeostasis|electron transport chain|induction of apoptosis|mitochondrial depolarization|transport	endoplasmic reticulum|mitochondrial inner membrane	2 iron, 2 sulfur cluster binding|caspase activator activity|flavin adenine dinucleotide binding|metal ion binding|oxidoreductase activity|protein binding			ovary(2)|lung(2)	4	all_cancers(11;3.71e-26)|all_epithelial(7;1.59e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0367)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			CCGACCGGATCGTCCTGTGCA	0.652													8	80					0	0	1	0	0
SLC7A4	6545	broad.mit.edu	37	22	21385312	21385312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:21385312G>A	uc002zud.2	-	2	858	c.790C>T	c.(790-792)CCA>TCA	p.P264S	SLC7A4_uc002zue.2_Missense_Mutation_p.P264S	NM_004173	NP_004164	O43246	CTR4_HUMAN	solute carrier family 7 (cationic amino acid	264					cellular amino acid metabolic process	integral to membrane	basic amino acid transmembrane transporter activity			ovary(1)|lung(1)	2	all_cancers(11;2.85e-22)|Lung NSC(8;4.21e-14)|all_lung(8;6.08e-13)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0968)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)		L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	GACCGCCGTGGGTTCTGGGCC	0.627													5	37					0	0	1	0	0
PPIL2	23759	broad.mit.edu	37	22	22024875	22024875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:22024875C>T	uc010gtj.1	+	3	219	c.103C>T	c.(103-105)CGT>TGT	p.R35C	PPIL2_uc002zvh.3_Missense_Mutation_p.R35C|PPIL2_uc002zvi.3_Missense_Mutation_p.R35C|PPIL2_uc002zvg.3_Missense_Mutation_p.R35C|PPIL2_uc011aij.1_Missense_Mutation_p.R35C	NM_148175	NP_680480	Q13356	PPIL2_HUMAN	peptidylprolyl isomerase-like 2 isoform a	35					blood coagulation|leukocyte migration|protein folding|protein polyubiquitination	Golgi lumen|nucleus|ubiquitin ligase complex	peptidyl-prolyl cis-trans isomerase activity|ubiquitin-ubiquitin ligase activity			ovary(2)	2	Colorectal(54;0.105)					AACAAATTTTCGTCGTTTACC	0.368													6	114					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22385591	22385591	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:22385591C>T	uc011aim.1	+	2		c.71C>T			uc002zvu.2_Intron					Parts of antibodies, mostly variable regions.												0						CTGACTCAATCGCCCTCTGCC	0.572													5	29					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22550623	22550623	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:22550623G>A	uc011aim.1	+	11		c.1117G>A								Parts of antibodies, mostly variable regions.												0						TCTCTGGACTGAAGACTGAGG	0.532													5	50					0	0	1	0	0
VPREB1	7441	broad.mit.edu	37	22	22599490	22599490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:22599490G>A	uc002zvx.1	+	2	205	c.179G>A	c.(178-180)AGG>AAG	p.R60K	LOC96610_uc011aim.1_Intron	NM_007128	NP_009059	P12018	VPREB_HUMAN	immunoglobulin iota chain precursor	60	Ig-like V-type.|Framework-2.				immune response	extracellular region	antigen binding|protein binding				0	all_hematologic(9;0.0312)|Acute lymphoblastic leukemia(84;0.155)	all_cancers(3;3.14e-14)|Acute lymphoblastic leukemia(3;2.97e-57)|all_hematologic(3;5.9e-52)		READ - Rectum adenocarcinoma(21;0.145)		TACCAGCAGAGGCCGGGCCAC	0.602													25	88					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22712449	22712449	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:22712449C>T	uc011aim.1	+	41		c.4237C>T								Parts of antibodies, mostly variable regions.												0						GAACGGCCCCCAAACTCCTCA	0.572													4	136					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22758874	22758874	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:22758874G>A	uc011aim.1	+	53		c.5940G>A								Parts of antibodies, mostly variable regions.												0						GGTACCAGCAGCTCCCAGGAA	0.562													7	78					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22764309	22764309	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:22764309C>T	uc011aim.1	+	58		c.6096C>T								Parts of antibodies, mostly variable regions.												0						TTCCAGGGTCCTGGGCCCAGT	0.617											OREG0026360	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	160					0	0	1	0	0
ZNF280A	129025	broad.mit.edu	37	22	22869805	22869805	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:22869805C>T	uc002zwe.2	-	2	403	c.150G>A	c.(148-150)GGG>GGA	p.G50G	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	50					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		TTGAAATCATCCCGACAAAGA	0.428													14	63					0	0	1	0	0
PRAME	23532	broad.mit.edu	37	22	22890509	22890509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:22890509G>A	uc002zwf.2	-	5	1666	c.1510C>T	c.(1510-1512)CCC>TCC	p.P504S	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Missense_Mutation_p.P488S|PRAME_uc010gtr.2_Missense_Mutation_p.P504S|PRAME_uc002zwg.2_Missense_Mutation_p.P504S|PRAME_uc002zwh.2_Missense_Mutation_p.P504S|PRAME_uc002zwi.2_Missense_Mutation_p.P504S|PRAME_uc002zwj.2_Missense_Mutation_p.P504S|PRAME_uc002zwk.2_Missense_Mutation_p.P504S	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	504	Mediates interaction with RARA.				apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		ATGAAACAGGGGCACAGGATG	0.532													19	158					0	0	1	0	0
PRAME	23532	broad.mit.edu	37	22	22892158	22892158	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:22892158G>A	uc002zwf.2	-	4	1099	c.943C>T	c.(943-945)CAG>TAG	p.Q315*	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Nonsense_Mutation_p.Q299*|PRAME_uc010gtr.2_Nonsense_Mutation_p.Q315*|PRAME_uc002zwg.2_Nonsense_Mutation_p.Q315*|PRAME_uc002zwh.2_Nonsense_Mutation_p.Q315*|PRAME_uc002zwi.2_Nonsense_Mutation_p.Q315*|PRAME_uc002zwj.2_Nonsense_Mutation_p.Q315*|PRAME_uc002zwk.2_Nonsense_Mutation_p.Q315*	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	315					apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		CTGAGCAACTGATCCAGGCGG	0.493													6	22					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23040652	23040652	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:23040652G>A	uc011aim.1	+	137		c.8559G>A								Parts of antibodies, mostly variable regions.												0						TGGGTCTCCTGGACAGTCGAT	0.587													11	227					0	0	1	0	0
BCR	613	broad.mit.edu	37	22	23523961	23523961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:23523961C>T	uc002zww.2	+	1	1410	c.814C>T	c.(814-816)CCG>TCG	p.P272S	BCR_uc002zwx.2_Missense_Mutation_p.P272S	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	272	Kinase.|Binding to ABL SH2-domain.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						GCCCCCTTGGCCGCCCCTGGA	0.667			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								10	31					0	0	1	0	0
C22orf15	150248	broad.mit.edu	37	22	24106828	24106828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:24106828G>A	uc011aja.1	+	4	539	c.253G>A	c.(253-255)GGA>AGA	p.G85R	C22orf15_uc002zxv.1_3'UTR|C22orf15_uc002zxu.2_Missense_Mutation_p.G90R	NM_182520	NP_872326	Q8WYQ4	CV015_HUMAN	hypothetical protein LOC150248	85											0		Medulloblastoma(6;6.27e-05)|all_neural(6;0.00518)				TGTCACAGAGGGAGAGGACAT	0.572													4	41					0	0	1	0	0
ADORA2A	135	broad.mit.edu	37	22	24829552	24829552	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:24829552C>T	uc002zzx.2	+	4	943	c.180C>T	c.(178-180)ATC>ATT	p.I60I	ADORA2A_uc002zzy.3_Silent_p.I60I|ADORA2A_uc011ajs.1_Intron|C22orf45_uc003aaa.1_5'Flank|ADORA2A_uc010guo.1_Missense_Mutation_p.P80S|ADORA2A_uc010gup.2_Silent_p.I60I|ADORA2A_uc010guq.2_Silent_p.I60I|ADORA2A_uc003aab.2_Silent_p.I60I|ADORA2A_uc003aac.2_Intron	NM_000675	NP_000666	P29274	AA2AR_HUMAN	adenosine A2a receptor	60	Helical; Name=2.				apoptosis|blood coagulation|cAMP biosynthetic process|cellular defense response|inflammatory response|nerve growth factor receptor signaling pathway|phagocytosis|sensory perception	integral to plasma membrane|membrane fraction	enzyme binding				0	Colorectal(2;0.196)				Caffeine(DB00201)|Defibrotide(DB04932)|Pegademase bovine(DB00061)|Theophylline(DB00277)	TGCTCGCCATCCCCTTTGCCA	0.612													4	102					0	0	1	0	0
GGT1	2678	broad.mit.edu	37	22	25019871	25019871	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:25019871G>A	uc003aan.1	+	11	1495	c.1008G>A	c.(1006-1008)GTG>GTA	p.V336V	GGT1_uc003aas.1_Silent_p.V336V|GGT1_uc003aat.1_Silent_p.V336V|GGT1_uc003aau.1_Silent_p.V336V|GGT1_uc003aav.1_Silent_p.V336V|GGT1_uc003aaw.1_Silent_p.V336V|GGT1_uc003aax.1_Silent_p.V336V	NM_013430	NP_038347	P19440	GGT1_HUMAN	gamma-glutamyltransferase 1 precursor	336	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity|protein binding				0					Glutathione(DB00143)	CCAAGTTTGTGGATGTGACTG	0.627													3	21					0	0	1	0	0
PIWIL3	440822	broad.mit.edu	37	22	25145727	25145727	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:25145727C>T	uc003abd.1	-	10	1566	c.1149G>A	c.(1147-1149)TGG>TGA	p.W383*	PIWIL3_uc011ajx.1_Nonsense_Mutation_p.W274*|PIWIL3_uc011ajy.1_Nonsense_Mutation_p.W274*|PIWIL3_uc010gut.1_Nonsense_Mutation_p.W383*	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	383	PAZ.				cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						GGCCCTTTTTCCATCTGCCCT	0.468													5	25					0	0	1	0	0
PIWIL3	440822	broad.mit.edu	37	22	25150021	25150021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:25150021C>T	uc003abd.1	-	8	1354	c.937G>A	c.(937-939)GAA>AAA	p.E313K	PIWIL3_uc011ajx.1_Missense_Mutation_p.E204K|PIWIL3_uc011ajy.1_Missense_Mutation_p.E204K|PIWIL3_uc010gut.1_Missense_Mutation_p.E313K	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	313	PAZ.				cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						TTAGTTACTTCCTCTCGGATG	0.428													4	60					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25250979	25250979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:25250979G>A	uc003abg.2	+	6	629	c.472G>A	c.(472-474)GAA>AAA	p.E158K	SGSM1_uc003abh.2_Missense_Mutation_p.E158K|SGSM1_uc010guu.1_Missense_Mutation_p.E158K|SGSM1_uc003abj.2_Missense_Mutation_p.E158K|SGSM1_uc003abi.1_Missense_Mutation_p.E133K|SGSM1_uc003abf.2_Missense_Mutation_p.E158K	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	158	RUN.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						CTATGAGAAGGAAGCTCTCCT	0.498													4	30					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25301109	25301110	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:25301109_25301110GG>CT	uc003abg.2	+	22	3095_3096	c.2938_2939GG>CT	c.(2938-2940)GGC>CTC	p.G980L	SGSM1_uc003abh.2_Missense_Mutation_p.G919L|SGSM1_uc010guu.1_Missense_Mutation_p.G925L|SGSM1_uc003abj.2_Missense_Mutation_p.G864L|SGSM1_uc003abi.1_Missense_Mutation_p.G900L	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	980	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						CTATGTCCAGGGCATGTGTGAT	0.5													23	225					0	0	1	0	0
IGLL3	91353	broad.mit.edu	37	22	25714286	25714286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:25714286C>T	uc003abr.2	+	1	399	c.299C>T	c.(298-300)TCC>TTC	p.S100F		NM_001013618	NP_001013640			immunoglobulin lambda-like polypeptide 3												0						GGGTTTCAATCCAAGCATAAT	0.617													6	83					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26224821	26224821	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:26224821G>A	uc003abz.1	+	15	3115	c.2865G>A	c.(2863-2865)CAG>CAA	p.Q955Q	MYO18B_uc003aca.1_Silent_p.Q836Q|MYO18B_uc010guy.1_Silent_p.Q836Q|MYO18B_uc010guz.1_Silent_p.Q836Q|MYO18B_uc011aka.1_Silent_p.Q109Q|MYO18B_uc011akb.1_Silent_p.Q468Q	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	955	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCCGGCACCAGGGCAAGGACC	0.607													6	78					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26228958	26228958	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:26228958C>T	uc003abz.1	+	16	3304	c.3054C>T	c.(3052-3054)CCC>CCT	p.P1018P	MYO18B_uc003aca.1_Silent_p.P899P|MYO18B_uc010guy.1_Silent_p.P899P|MYO18B_uc010guz.1_Silent_p.P899P|MYO18B_uc011aka.1_Silent_p.P172P|MYO18B_uc011akb.1_Silent_p.P531P	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1018	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						ATCAAAATCCCTCTCAGGTAA	0.483													9	70					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26294330	26294330	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:26294330G>A	uc003abz.1	+	29	4975	c.4725G>A	c.(4723-4725)AAG>AAA	p.K1575K	MYO18B_uc003aca.1_Silent_p.K1456K|MYO18B_uc010guy.1_Silent_p.K1457K|MYO18B_uc010guz.1_Silent_p.K1455K|MYO18B_uc011aka.1_Silent_p.K729K|MYO18B_uc011akb.1_Silent_p.K1088K	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1575	Potential.|Tail.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						ACCAACTGAAGAGGAAGTGCC	0.493													6	60					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26423026	26423026	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:26423026G>A	uc003abz.1	+	43	7336	c.7086G>A	c.(7084-7086)GGG>GGA	p.G2362G	MYO18B_uc003aca.1_Silent_p.G2243G|MYO18B_uc010guy.1_Silent_p.G2244G|MYO18B_uc010guz.1_Silent_p.G2242G|MYO18B_uc011aka.1_Silent_p.G1516G|MYO18B_uc011akb.1_Silent_p.G1875G|MYO18B_uc010gva.1_Silent_p.G345G|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2362						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CGAGCATGGGGAGAAAACTGA	0.582													13	96					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26423375	26423375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:26423375G>A	uc003abz.1	+	43	7685	c.7435G>A	c.(7435-7437)GAG>AAG	p.E2479K	MYO18B_uc003aca.1_Missense_Mutation_p.E2360K|MYO18B_uc010guy.1_Missense_Mutation_p.E2361K|MYO18B_uc010guz.1_Missense_Mutation_p.E2359K|MYO18B_uc011aka.1_Missense_Mutation_p.E1633K|MYO18B_uc011akb.1_Missense_Mutation_p.E1992K|MYO18B_uc010gva.1_Missense_Mutation_p.E462K|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2479						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TGAAACGGAAGAGGCTAACCG	0.562													6	53					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26688486	26688487	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:26688486_26688487CC>TT	uc003acb.2	+	2	365_366	c.209_210CC>TT	c.(208-210)CCC>CTT	p.P70L	SEZ6L_uc003acc.2_Missense_Mutation_p.P70L|SEZ6L_uc011akc.1_Missense_Mutation_p.P70L|SEZ6L_uc003acd.2_Missense_Mutation_p.P70L|SEZ6L_uc011akd.1_Missense_Mutation_p.P70L|SEZ6L_uc003ace.2_Missense_Mutation_p.P70L|SEZ6L_uc003acf.1_5'UTR|SEZ6L_uc010gvc.1_5'UTR	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	70	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GTAACAGCGCCCCCCAGTTCCT	0.634													7	27					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26706682	26706682	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:26706682G>A	uc003acb.2	+	7	1717	c.1561G>A	c.(1561-1563)GAC>AAC	p.D521N	SEZ6L_uc003acc.2_Missense_Mutation_p.D521N|SEZ6L_uc011akc.1_Missense_Mutation_p.D521N|SEZ6L_uc003acd.2_Missense_Mutation_p.D521N|SEZ6L_uc011akd.1_Missense_Mutation_p.D521N|SEZ6L_uc003ace.2_Missense_Mutation_p.D521N|SEZ6L_uc003acf.1_Missense_Mutation_p.D294N|SEZ6L_uc010gvc.1_Missense_Mutation_p.D294N	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	521	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						TCTTCTCTACGACTCCCTTCA	0.602													7	85					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26707777	26707777	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:26707777G>A	uc003acb.2	+	8	1881	c.1725G>A	c.(1723-1725)GGG>GGA	p.G575G	SEZ6L_uc003acc.2_Silent_p.G575G|SEZ6L_uc011akc.1_Silent_p.G575G|SEZ6L_uc003acd.2_Silent_p.G575G|SEZ6L_uc011akd.1_Silent_p.G575G|SEZ6L_uc003ace.2_Silent_p.G575G|SEZ6L_uc003acf.1_Silent_p.G348G|SEZ6L_uc010gvc.1_Silent_p.G348G	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	575	Sushi 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						TCCAGAATGGGAACTTCACTA	0.562													52	230					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26761339	26761339	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:26761339G>A	uc003acb.2	+	13	2757	c.2601G>A	c.(2599-2601)TCG>TCA	p.S867S	SEZ6L_uc003acc.2_Silent_p.S867S|SEZ6L_uc011akc.1_Silent_p.S867S|SEZ6L_uc003acd.2_Silent_p.T803T|SEZ6L_uc011akd.1_Silent_p.S867S|SEZ6L_uc003ace.2_Intron|SEZ6L_uc003acf.1_Silent_p.S640S|SEZ6L_uc010gvc.1_Intron|SEZ6L_uc011ake.1_RNA	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	867	Sushi 4.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GCATTTCAGCGGAGGAGTCCC	0.532													6	127					0	0	1	0	0
CRYBA4	1413	broad.mit.edu	37	22	27019208	27019208	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:27019208G>A	uc003acz.3	+	3	85	c.50G>A	c.(49-51)TGG>TAG	p.W17*		NM_001886	NP_001877	P53673	CRBA4_HUMAN	crystallin, beta A4	17	Beta/gamma crystallin 'Greek key' 1.				camera-type eye development|visual perception	soluble fraction	structural constituent of eye lens				0						ATGGTGGTGTGGGATGAGGAC	0.602													8	124					0	0	1	0	0
CRYBA4	1413	broad.mit.edu	37	22	27024363	27024363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:27024363G>A	uc003acz.3	+	5	447	c.412G>A	c.(412-414)GAA>AAA	p.E138K		NM_001886	NP_001877	P53673	CRBA4_HUMAN	crystallin, beta A4	138	Beta/gamma crystallin 'Greek key' 3.				camera-type eye development|visual perception	soluble fraction	structural constituent of eye lens				0						GGAAGGCAATGAAGTAGGGTC	0.562													5	70					0	0	1	0	0
MN1	4330	broad.mit.edu	37	22	28193505	28193505	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:28193505G>A	uc003adj.2	-	1	3982	c.3027C>T	c.(3025-3027)TCC>TCT	p.S1009S		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	1009							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						CCTTCCCCCAGGATGGCGACG	0.697			T	ETV6	AML|meningioma								5	46					0	0	1	0	0
ZNRF3	84133	broad.mit.edu	37	22	29445697	29445697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:29445697C>T	uc003aeg.2	+	8	1393	c.1228C>T	c.(1228-1230)CCC>TCC	p.P410S	ZNRF3_uc003aeh.1_Missense_Mutation_p.P410S	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	510	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						CCTGCTCTTCCCCACCGTGGT	0.711													4	29					0	0	1	0	0
KREMEN1	83999	broad.mit.edu	37	22	29533450	29533450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:29533450C>T	uc011akm.1	+	6	765	c.752C>T	c.(751-753)GCC>GTC	p.A251V	KREMEN1_uc003ael.2_Missense_Mutation_p.A251V|KREMEN1_uc011akn.1_Missense_Mutation_p.A134V	NM_032045	NP_114434	Q96MU8	KREM1_HUMAN	kringle-containing transmembrane protein 1	249	Extracellular (Potential).|CUB.				cell communication|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane|membrane fraction	protein binding			ovary(3)|lung(2)	5						GTTCCGGGGGCCTCCCACATC	0.602													9	76					0	0	1	0	0
EMID1	129080	broad.mit.edu	37	22	29611517	29611517	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:29611517T>C	uc003aen.2	+	3	292	c.217T>C	c.(217-219)TAC>CAC	p.Y73H	EMID1_uc003aem.2_Missense_Mutation_p.Y73H|EMID1_uc003aeo.2_Missense_Mutation_p.Y73H|EMID1_uc003aep.2_Missense_Mutation_p.Y73H	NM_133455	NP_597712	Q96A84	EMID1_HUMAN	EMI domain containing 1	73	EMI.					collagen					0						CTCTTTCAGCTACAGAACTGT	0.587													12	59					0	0	1	0	0
EMID1	129080	broad.mit.edu	37	22	29621147	29621147	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:29621147G>C	uc003aen.2	+	4	414	c.339G>C	c.(337-339)GAG>GAC	p.E113D	EMID1_uc003aem.2_Missense_Mutation_p.E115D|EMID1_uc003aeo.2_Missense_Mutation_p.E115D|EMID1_uc003aep.2_Missense_Mutation_p.E115D	NM_133455	NP_597712	Q96A84	EMID1_HUMAN	EMI domain containing 1	113						collagen					0						CCTCCTTGGAGCCCATGTGGT	0.642													6	92					0	0	1	0	0
EMID1	129080	broad.mit.edu	37	22	29630187	29630187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:29630187G>A	uc003aen.2	+	11	1097	c.1022G>A	c.(1021-1023)AGA>AAA	p.R341K	EMID1_uc003aem.2_Missense_Mutation_p.R343K|EMID1_uc003aeo.2_Missense_Mutation_p.R343K|EMID1_uc003aep.2_Intron	NM_133455	NP_597712	Q96A84	EMID1_HUMAN	EMI domain containing 1	341	Collagen-like.					collagen					0						AAGGGCGAGAGAGTGAGTACC	0.627													3	13					0	0	1	0	0
EMID1	129080	broad.mit.edu	37	22	29630293	29630293	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:29630293G>A	uc003aen.2	+	12	1099	c.1024_splice	c.e12-1	p.G342_splice	EMID1_uc003aem.2_Splice_Site_p.G344_splice|EMID1_uc003aeo.2_Splice_Site_p.G344_splice|EMID1_uc003aep.2_Splice_Site_p.G323_splice	NM_133455	NP_597712	Q96A84	EMID1_HUMAN	EMI domain containing 1							collagen					0						CTCTTACACAGGGACTGCGTG	0.627													3	32					0	0	1	0	0
EWSR1	2130	broad.mit.edu	37	22	29693828	29693828	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:29693828C>T	uc003aet.2	+	13	1634	c.1306C>T	c.(1306-1308)CAA>TAA	p.Q436*	EWSR1_uc003aev.2_Nonsense_Mutation_p.Q441*|EWSR1_uc003aew.2_Nonsense_Mutation_p.Q380*|EWSR1_uc003aex.2_Nonsense_Mutation_p.Q435*|EWSR1_uc003aey.2_Nonsense_Mutation_p.Q231*|EWSR1_uc003aez.2_Nonsense_Mutation_p.Q97*	NM_005243	NP_005234	Q01844	EWS_HUMAN	Ewing sarcoma breakpoint region 1 isoform 2	436	RRM.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	calmodulin binding|nucleotide binding|RNA binding|zinc ion binding		EWSR1/FLI1(2266)|EWSR1/ATF1(323)|EWSR1/WT1(231)|EWSR1/ERG(162)|EWSR1/NR4A3(140)|EWSR1/DDIT3(43)|EWSR1/CREB1(42)|EWSR1/FEV(10)|EWSR1/POU5F1(10)|EWSR1/ETV1(7)|EWSR1/ETV4(6)|EWSR1/ZNF384(4)|EWSR1/PBX1(3)|EWSR1/SP3(3)|EWSR1/PATZ1(2)	bone(2526)|soft_tissue(702)|skin(8)|autonomic_ganglia(4)|haematopoietic_and_lymphoid_tissue(4)|salivary_gland(2)|central_nervous_system(2)|NS(2)|pancreas(2)|lung(1)|ovary(1)	3254						GAAAGATTTTCAAGGGAGCAA	0.512			T	FLI1|ERG|ZNF278|NR4A3|FEV|ATF1|ETV1|ETV4|WT1|ZNF384|CREB1|POU5F1| PBX1	Ewing sarcoma| desmoplastic small round cell tumor |ALL|clear cell sarcoma|sarcoma|myoepithelioma								13	81					0	0	1	0	0
UQCR10	29796	broad.mit.edu	37	22	30163512	30163512	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:30163512C>T	uc003agq.1	+	1	155	c.125C>T	c.(124-126)GCT>GTT	p.A42V	ZMAT5_uc003agm.2_5'Flank|ZMAT5_uc003agn.2_5'Flank|ZMAT5_uc003ago.1_5'Flank|UQCR10_uc003agp.1_Missense_Mutation_p.A42V	NM_013387	NP_037519	Q9UDW1	QCR9_HUMAN	ubiquinol-cytochrome c reductase complex 7.2kDa	42					mitochondrial electron transport, ubiquinol to cytochrome c	mitochondrial inner membrane|respiratory chain	ubiquinol-cytochrome-c reductase activity			ovary(1)	1						GGCGCGGACGCTATCTACGAC	0.607													8	39					0	0	1	0	0
ASCC2	84164	broad.mit.edu	37	22	30189431	30189431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:30189431C>T	uc003agr.2	-	17	1942	c.1837G>A	c.(1837-1839)GAG>AAG	p.E613K	ASCC2_uc003ags.2_RNA|ASCC2_uc003agt.2_Missense_Mutation_p.E613K|ASCC2_uc011akr.1_Missense_Mutation_p.E537K	NM_032204	NP_115580	Q9H1I8	ASCC2_HUMAN	activating signal cointegrator 1 complex subunit	613					regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			OV - Ovarian serous cystadenocarcinoma(5;0.000103)|Epithelial(10;0.0169)|all cancers(5;0.0259)			TACTCATCCTCGTAGTAGACA	0.602													5	37					0	0	1	0	0
ASCC2	84164	broad.mit.edu	37	22	30202864	30202864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:30202864G>A	uc003agr.2	-	10	1043	c.938C>T	c.(937-939)TCC>TTC	p.S313F	ASCC2_uc003ags.2_RNA|ASCC2_uc003agt.2_Missense_Mutation_p.S313F|ASCC2_uc011akr.1_Missense_Mutation_p.S237F	NM_032204	NP_115580	Q9H1I8	ASCC2_HUMAN	activating signal cointegrator 1 complex subunit	313					regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			OV - Ovarian serous cystadenocarcinoma(5;0.000103)|Epithelial(10;0.0169)|all cancers(5;0.0259)			CCTGGAATGGGAGAGCCTCTG	0.458													5	39					0	0	1	0	0
MTMR3	8897	broad.mit.edu	37	22	30412626	30412626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:30412626C>T	uc003agv.3	+	15	1941	c.1613C>T	c.(1612-1614)TCA>TTA	p.S538L	MTMR3_uc003agu.3_Missense_Mutation_p.S538L|MTMR3_uc003agw.3_Missense_Mutation_p.S538L	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	538	Myotubularin phosphatase.				phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			TCCGTGTGGTCACTTCTTCGG	0.498													10	121					0	0	1	0	0
OSM	5008	broad.mit.edu	37	22	30659890	30659890	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:30659890C>T	uc003ahb.2	-	3	793	c.741G>A	c.(739-741)AGG>AGA	p.R247R		NM_020530	NP_065391	P13725	ONCM_HUMAN	oncostatin M precursor	247					cell proliferation|immune response|negative regulation of cell proliferation|negative regulation of hormone secretion|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of MAPKKK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of growth	extracellular space|oncostatin-M receptor complex	cytokine activity|growth factor activity|oncostatin-M receptor binding			skin(1)	1			Epithelial(10;0.206)			GCAGCTGTCCCCTGGTCATGA	0.657													8	139					0	0	1	0	0
GATSL3	652968	broad.mit.edu	37	22	30683449	30683449	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:30683449G>A	uc003ahd.2	-	3	415	c.285C>T	c.(283-285)ACC>ACT	p.T95T	GATSL3_uc003ahc.2_Silent_p.T95T|GATSL3_uc003ahe.2_Silent_p.T95T|GATSL3_uc003ahf.2_RNA|GATSL3_uc003ahg.2_RNA|GATSL3_uc003ahh.2_RNA|GATSL3_uc010gvq.2_RNA|GATSL3_uc003ahi.2_Silent_p.T268T|GATSL3_uc010gvr.2_5'UTR|GATSL3_uc010gvs.2_5'UTR	NM_001037666	NP_001032755	Q8WTX7	GATL3_HUMAN	GATS protein-like 3	95										breast(1)	1						GGGCGATCTTGGTGACCCCAG	0.612											OREG0026457	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	64					0	0	1	0	0
GATSL3	652968	broad.mit.edu	37	22	30684753	30684753	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:30684753G>A	uc003ahd.2	-	2	256	c.126C>T	c.(124-126)TTC>TTT	p.F42F	GATSL3_uc003ahc.2_Silent_p.F42F|GATSL3_uc003ahe.2_Silent_p.F42F|GATSL3_uc003ahf.2_RNA|GATSL3_uc003ahg.2_Intron|GATSL3_uc003ahh.2_RNA|GATSL3_uc010gvq.2_Intron|GATSL3_uc003ahi.2_Intron|GATSL3_uc010gvr.2_Intron|GATSL3_uc010gvs.2_Intron	NM_001037666	NP_001032755	Q8WTX7	GATL3_HUMAN	GATS protein-like 3	42										breast(1)	1						CCGTCAGGCTGAAGAACTTGC	0.597													5	29					0	0	1	0	0
SEC14L4	284904	broad.mit.edu	37	22	30888505	30888505	+	Missense_Mutation	SNP	G	A	A	rs145618105	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:30888505G>A	uc003aid.2	-	8	720	c.620C>T	c.(619-621)TCG>TTG	p.S207L	SEC14L4_uc011akz.1_Missense_Mutation_p.S207L|SEC14L4_uc003aie.2_Missense_Mutation_p.S192L|SEC14L4_uc003aif.2_Missense_Mutation_p.S153L	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	207	CRAL-TRIO.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	ACTCATGAACGACTTGACCAA	0.537													5	47					0	0	1	0	0
TCN2	6948	broad.mit.edu	37	22	31011769	31011769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:31011769C>T	uc003aip.1	+	6	1093	c.935C>T	c.(934-936)CCA>CTA	p.P312L	TCN2_uc003aiq.1_Missense_Mutation_p.P308L|TCN2_uc003air.1_Missense_Mutation_p.P285L	NM_000355	NP_000346	P20062	TCO2_HUMAN	transcobalamin II precursor	312					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular space	cobalamin binding			central_nervous_system(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TGTCTGGCACCACGAGGTAGC	0.527													5	84					0	0	1	0	0
TCN2	6948	broad.mit.edu	37	22	31018985	31018985	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:31018985C>T	uc003aip.1	+	8	1295	c.1137C>T	c.(1135-1137)CCC>CCT	p.P379P	TCN2_uc003aiq.1_Silent_p.P375P|TCN2_uc003air.1_Silent_p.P352P	NM_000355	NP_000346	P20062	TCO2_HUMAN	transcobalamin II precursor	379					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular space	cobalamin binding			central_nervous_system(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TGTCAGGCCCCTACTTAACCT	0.567													6	78					0	0	1	0	0
SLC35E4	339665	broad.mit.edu	37	22	31042955	31042955	+	Silent	SNP	C	T	T	rs117790300	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:31042955C>T	uc003ais.1	+	2	1635	c.990C>T	c.(988-990)TTC>TTT	p.F330F	SLC35E4_uc003ait.2_Intron	NM_001001479	NP_001001479	Q6ICL7	S35E4_HUMAN	solute carrier family 35, member E4	330	Helical; (Potential).					integral to membrane					0						ACTGCGAGTTCGTGGCCTCCT	0.632													6	62					0	0	1	0	0
OSBP2	23762	broad.mit.edu	37	22	31301954	31301954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:31301954G>A	uc003aiy.1	+	13	2610	c.2506G>A	c.(2506-2508)GAG>AAG	p.E836K	OSBP2_uc011ala.1_Missense_Mutation_p.E670K|OSBP2_uc010gwc.1_Missense_Mutation_p.E663K|OSBP2_uc011alb.1_Missense_Mutation_p.E787K|OSBP2_uc003aiz.1_Missense_Mutation_p.E835K|OSBP2_uc003aja.1_Missense_Mutation_p.E469K|OSBP2_uc011alc.1_Missense_Mutation_p.E578K|OSBP2_uc003ajb.2_Missense_Mutation_p.E381K|OSBP2_uc011ald.1_Missense_Mutation_p.E380K|OSBP2_uc010gwd.1_Missense_Mutation_p.R319Q	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	836					lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						CCGTTGGGACGAGGCCAATAC	0.716													7	18					0	0	1	0	0
MORC2	22880	broad.mit.edu	37	22	31330939	31330939	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:31330939G>A	uc003aje.1	-	20	3200	c.1836C>T	c.(1834-1836)CCC>CCT	p.P612P		NM_014941	NP_055756	Q9Y6X9	MORC2_HUMAN	MORC family CW-type zinc finger 2	674							ATP binding|zinc ion binding			ovary(1)|pancreas(1)	2						CAGGCTTTCGGGGTGCCTCAG	0.617													6	63					0	0	1	0	0
LIMK2	3985	broad.mit.edu	37	22	31656016	31656016	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:31656016C>T	uc003akh.2	+	5	649	c.504C>T	c.(502-504)TCC>TCT	p.S168S	LIMK2_uc003akg.2_Silent_p.S85S|LIMK2_uc003aki.2_Intron|LIMK2_uc003akj.2_Silent_p.S147S|LIMK2_uc003akk.2_Silent_p.S147S|LIMK2_uc011aln.1_Silent_p.S85S	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	168	PDZ.					mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						TCTCCGTGTCCGTGGAGAGTG	0.552													6	73					0	0	1	0	0
PATZ1	23598	broad.mit.edu	37	22	31741063	31741063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:31741063G>A	uc003akq.2	-	1	1187	c.526C>T	c.(526-528)CGC>TGC	p.R176C	PATZ1_uc003akp.2_Missense_Mutation_p.R176C|PATZ1_uc003akr.2_Missense_Mutation_p.R176C|PATZ1_uc003aks.2_Missense_Mutation_p.R176C|uc003akt.2_5'Flank	NM_014323	NP_055138	Q9HBE1	PATZ1_HUMAN	POZ (BTB) and AT hook containing zinc finger 1	176					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/PATZ1(2)	soft_tissue(2)	2						CCAGGGGGGCGAAAGAGCATT	0.592													10	117					0	0	1	0	0
SFI1	9814	broad.mit.edu	37	22	31952984	31952984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:31952984C>T	uc003ale.2	+	7	994	c.601C>T	c.(601-603)CGT>TGT	p.R201C	SFI1_uc003ald.1_Missense_Mutation_p.R177C|SFI1_uc003alf.2_Missense_Mutation_p.R201C|SFI1_uc003alg.2_Missense_Mutation_p.R119C|SFI1_uc011alp.1_Missense_Mutation_p.R119C|SFI1_uc011alq.1_Missense_Mutation_p.R177C|SFI1_uc003alh.2_Intron	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	201	HAT 2.				G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						CGTGGTTGTTCGTAGGACCAA	0.468													16	56					0	0	1	0	0
SFI1	9814	broad.mit.edu	37	22	31985558	31985558	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:31985558C>T	uc003ale.2	+	15	1932	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F	SFI1_uc003ald.1_Silent_p.F489F|SFI1_uc003alf.2_Silent_p.F482F|SFI1_uc003alg.2_Silent_p.F431F|SFI1_uc011alp.1_Silent_p.F431F|SFI1_uc011alq.1_Silent_p.F458F|SFI1_uc003alh.2_RNA|SFI1_uc010gwi.2_RNA	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	513					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						CAACACGTTTCCACAGGTATG	0.537													7	66					0	0	1	0	0
DEPDC5	9681	broad.mit.edu	37	22	32215055	32215055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:32215055C>T	uc003als.2	+	22	1856	c.1714C>T	c.(1714-1716)CCA>TCA	p.P572S	DEPDC5_uc011als.1_Missense_Mutation_p.P572S|DEPDC5_uc011alu.1_Missense_Mutation_p.P572S|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Missense_Mutation_p.P572S|DEPDC5_uc003alu.2_Missense_Mutation_p.P12S|DEPDC5_uc003alv.2_RNA|DEPDC5_uc011alt.1_Missense_Mutation_p.P544S	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	572					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						CTCCAGTGCACCAGGGAGGTT	0.532													4	66					0	0	1	0	0
DEPDC5	9681	broad.mit.edu	37	22	32233122	32233122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:32233122C>T	uc003als.2	+	26	2450	c.2308C>T	c.(2308-2310)CCA>TCA	p.P770S	DEPDC5_uc011als.1_Missense_Mutation_p.P701S|DEPDC5_uc011alu.1_Missense_Mutation_p.P779S|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Missense_Mutation_p.P770S|DEPDC5_uc003alu.2_Missense_Mutation_p.P219S|DEPDC5_uc003alv.2_RNA|DEPDC5_uc011alw.1_Missense_Mutation_p.P100S|DEPDC5_uc003alw.2_Missense_Mutation_p.P68S|DEPDC5_uc011alx.1_5'UTR	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	770					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						TGATCTCCTTCCAGAAGCAGA	0.532													5	48					0	0	1	0	0
RFPL3	10738	broad.mit.edu	37	22	32754262	32754262	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:32754262G>A	uc003amj.2	+	1	409	c.204G>A	c.(202-204)CAG>CAA	p.Q68Q	RFPL3_uc010gwn.2_Silent_p.Q39Q	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1	68	RING-type.						zinc ion binding			ovary(1)	1						ATTCGCTGCAGAAGGAGCCCC	0.537													16	55					0	0	1	0	0
RFPL3	10738	broad.mit.edu	37	22	32756380	32756380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:32756380C>T	uc003amj.2	+	2	720	c.515C>T	c.(514-516)TCC>TTC	p.S172F	RFPL3_uc010gwn.2_Missense_Mutation_p.S143F|RFPL3S_uc003amk.2_RNA|RFPL3S_uc003aml.2_RNA	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1	172	B30.2/SPRY.						zinc ion binding			ovary(1)	1						ATCCTGGGCTCCCCTCGCTTT	0.567													7	84					0	0	1	0	0
BPIL2	254240	broad.mit.edu	37	22	32828379	32828379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:32828379G>A	uc003amn.2	-	10	1130	c.1130C>T	c.(1129-1131)ACC>ATC	p.T377I	BPIL2_uc010gwo.2_Intron|BPIL2_uc011amb.1_Missense_Mutation_p.T101I	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing	377						extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						GGAAACGATGGTTTCAACTGT	0.512													6	87					0	0	1	0	0
BPIL2	254240	broad.mit.edu	37	22	32841979	32841979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:32841979C>T	uc003amn.2	-	4	379	c.379G>A	c.(379-381)GAC>AAC	p.D127N	BPIL2_uc010gwo.2_5'UTR|BPIL2_uc011amb.1_Intron	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing	127						extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						CCTCCTGTGTCTTGGCTGTTT	0.418													8	44					0	0	1	0	0
FBXO7	25793	broad.mit.edu	37	22	32889265	32889265	+	Nonsense_Mutation	SNP	C	T	T	rs78099169		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:32889265C>T	uc003amq.2	+	7	1424	c.1141C>T	c.(1141-1143)CGA>TGA	p.R381*	FBXO7_uc003amr.2_Nonsense_Mutation_p.R267*|FBXO7_uc003ams.2_Nonsense_Mutation_p.R225*|FBXO7_uc003amt.2_Nonsense_Mutation_p.R302*|FBXO7_uc003amu.2_Nonsense_Mutation_p.R267*|FBXO7_uc003amv.2_Nonsense_Mutation_p.R80*	NM_012179	NP_036311	Q9Y3I1	FBX7_HUMAN	F-box only protein 7 isoform 1	381					cell death|regulation of protein stability|ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(1)	1						GCGTGATTTTCGAGGTGATTT	0.408													4	39					0	0	1	0	0
SYN3	8224	broad.mit.edu	37	22	32914272	32914272	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:32914272G>A	uc003amx.2	-	12	1527	c.1368C>T	c.(1366-1368)CCC>CCT	p.P456P	SYN3_uc003amy.2_Intron|SYN3_uc003amz.2_Silent_p.P455P|SYN3_uc011amc.1_Silent_p.P90P	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	456	J; Pro-rich linker.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						TCTGTTGGGAGGGGCTTCCAG	0.577													10	127					0	0	1	0	0
SYN3	8224	broad.mit.edu	37	22	33402392	33402392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:33402392G>A	uc003amx.2	-	1	415	c.256C>T	c.(256-258)CCC>TCC	p.P86S	SYN3_uc003amy.2_Missense_Mutation_p.P86S|SYN3_uc003amz.2_Missense_Mutation_p.P86S	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	86	B; linker.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						TGAACAATGGGCGTGGAGGGA	0.557													17	113					0	0	1	0	0
LARGE	9215	broad.mit.edu	37	22	33700229	33700229	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:33700229G>A	uc003and.3	-	13	2295	c.1716C>T	c.(1714-1716)CTC>CTT	p.L572L	LARGE_uc011amd.1_Silent_p.L371L|LARGE_uc003ane.3_Silent_p.L572L|LARGE_uc010gwp.2_Silent_p.L520L|LARGE_uc011ame.1_Silent_p.L504L|LARGE_uc011amf.1_Silent_p.L572L	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	572	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				GGTACTCATAGAGCCCATACA	0.433													5	60					0	0	1	0	0
ISX	91464	broad.mit.edu	37	22	35478537	35478537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:35478537C>T	uc003anj.2	+	2	1207	c.256C>T	c.(256-258)CGT>TGT	p.R86C	ISX_uc011amg.1_Missense_Mutation_p.R74C	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	86	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						GCGGAGGGTTCGTACCACCTT	0.557													5	69					0	0	1	0	0
MCM5	4174	broad.mit.edu	37	22	35812752	35812752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:35812752C>T	uc003anu.3	+	12	1629	c.1535C>T	c.(1534-1536)TCG>TTG	p.S512L	MCM5_uc010gwr.2_Missense_Mutation_p.S321L|MCM5_uc003anv.3_Missense_Mutation_p.S469L|MCM5_uc010gws.1_RNA|MCM5_uc003anw.1_Missense_Mutation_p.S296L	NM_006739	NP_006730	P33992	MCM5_HUMAN	minichromosome maintenance complex component 5	512	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)	1						ACCATCTTGTCGCGCTTCGAC	0.597													10	99					0	0	1	0	0
RASD2	23551	broad.mit.edu	37	22	35947785	35947785	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:35947785C>T	uc003anx.2	+	3	712	c.507C>T	c.(505-507)TTC>TTT	p.F169F	RASD2_uc003any.2_Silent_p.F169F	NM_014310	NP_055125	Q96D21	RHES_HUMAN	RASD family, member 2 precursor	169					locomotory behavior|positive regulation of protein kinase B signaling cascade|positive regulation of protein sumoylation|regulation of cAMP-mediated signaling	intracellular|plasma membrane	G-protein beta-subunit binding|GTP binding|GTPase activity			lung(2)|skin(1)	3						GCGCCTACTTCGAGGTGTCGG	0.622													7	27					0	0	1	0	0
RASD2	23551	broad.mit.edu	37	22	35947882	35947882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:35947882C>T	uc003anx.2	+	3	809	c.604C>T	c.(604-606)CGC>TGC	p.R202C	RASD2_uc003any.2_Missense_Mutation_p.R202C	NM_014310	NP_055125	Q96D21	RHES_HUMAN	RASD family, member 2 precursor	202	Interaction with GNB1, GNB2 and GNB3.				locomotory behavior|positive regulation of protein kinase B signaling cascade|positive regulation of protein sumoylation|regulation of cAMP-mediated signaling	intracellular|plasma membrane	G-protein beta-subunit binding|GTP binding|GTPase activity			lung(2)|skin(1)	3						CGCCCTGCATCGCAAGATCTC	0.612													5	41					0	0	1	0	0
RBM9	23543	broad.mit.edu	37	22	36205895	36205895	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:36205895A>C	uc003aon.3	-	3	506	c.394T>G	c.(394-396)TAC>GAC	p.Y132D	RBM9_uc003aog.3_Missense_Mutation_p.Y42D|RBM9_uc003aol.3_Missense_Mutation_p.Y62D|RBM9_uc003aoj.3_Missense_Mutation_p.Y62D|RBM9_uc003aok.3_Missense_Mutation_p.Y62D|RBM9_uc003aoh.3_Missense_Mutation_p.Y62D|RBM9_uc003aom.3_Missense_Mutation_p.Y62D|RBM9_uc010gwu.2_Missense_Mutation_p.Y42D|RBM9_uc003aoo.3_Missense_Mutation_p.Y132D|RBM9_uc003aop.3_Missense_Mutation_p.Y62D	NM_001082578	NP_001076047	O43251	RFOX2_HUMAN	RNA binding motif protein 9 isoform 5	72					estrogen receptor signaling pathway|mRNA processing|negative regulation of transcription, DNA-dependent|regulation of cell proliferation|RNA splicing	cytoplasm|nucleus	nucleotide binding|RNA binding|transcription corepressor activity|transcription factor binding				0						GTACTTCCGTAGAGTGTCAGG	0.542													38	133					0	0	1	0	0
APOL1	8542	broad.mit.edu	37	22	36661378	36661378	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:36661378C>T	uc003apf.2	+	6	664	c.496C>T	c.(496-498)CAG>TAG	p.Q166*	APOL1_uc011amn.1_Nonsense_Mutation_p.Q43*|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Nonsense_Mutation_p.Q182*|APOL1_uc011amo.1_Nonsense_Mutation_p.Q43*|APOL1_uc011amp.1_Nonsense_Mutation_p.Q166*|APOL1_uc011amq.1_Nonsense_Mutation_p.Q148*|APOL1_uc010gwx.2_Nonsense_Mutation_p.Q43*	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	166					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						AGATGGGGTTCAGAAGGTCCA	0.532													8	109					0	0	1	0	0
APOL1	8542	broad.mit.edu	37	22	36661521	36661521	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:36661521G>A	uc003apf.2	+	6	807	c.639G>A	c.(637-639)GAG>GAA	p.E213E	APOL1_uc011amn.1_Silent_p.E90E|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Silent_p.E229E|APOL1_uc011amo.1_Silent_p.E90E|APOL1_uc011amp.1_Silent_p.E213E|APOL1_uc011amq.1_Silent_p.E195E|APOL1_uc010gwx.2_Silent_p.E90E	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	213					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						CTGGGATGGAGTTGGGAATCA	0.562													15	129					0	0	1	0	0
APOL1	8542	broad.mit.edu	37	22	36661819	36661819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:36661819G>A	uc003apf.2	+	6	1105	c.937G>A	c.(937-939)GAA>AAA	p.E313K	APOL1_uc011amn.1_Missense_Mutation_p.E190K|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Missense_Mutation_p.E329K|APOL1_uc011amo.1_Missense_Mutation_p.E190K|APOL1_uc011amp.1_Missense_Mutation_p.E313K|APOL1_uc011amq.1_Missense_Mutation_p.E295K|APOL1_uc010gwx.2_Missense_Mutation_p.E190K	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	313					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						AATCTCAGCTGAAAGCGGTGA	0.562													6	73					0	0	1	0	0
APOL1	8542	broad.mit.edu	37	22	36661995	36661995	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:36661995G>A	uc003apf.2	+	6	1281	c.1113G>A	c.(1111-1113)CTG>CTA	p.L371L	APOL1_uc011amn.1_Silent_p.L248L|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Silent_p.L387L|APOL1_uc011amo.1_Silent_p.L248L|APOL1_uc011amp.1_Silent_p.L371L|APOL1_uc011amq.1_Silent_p.L353L|APOL1_uc010gwx.2_Silent_p.L248L	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	371					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						CTGAGGAGCTGAAGAAGGTGG	0.498													9	53					0	0	1	0	0
NCF4	4689	broad.mit.edu	37	22	37268428	37268428	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:37268428G>A	uc003apy.3	+	7	772	c.588G>A	c.(586-588)GTG>GTA	p.V196V	NCF4_uc003apz.3_Silent_p.V196V	NM_000631	NP_000622	Q15080	NCF4_HUMAN	neutrophil cytosolic factor 4 isoform 1	196	SH3.				cell communication|immune response|oxidation-reduction process	cytosol|NADPH oxidase complex	phosphatidylinositol binding|protein dimerization activity			ovary(1)	1						CTGGAGATGTGATCTTCCTCC	0.308													20	83					0	0	1	0	0
TST	7263	broad.mit.edu	37	22	37407153	37407153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:37407153G>A	uc003aqg.2	-	2	1509	c.809C>T	c.(808-810)GCC>GTC	p.A270V	TST_uc003aqh.2_Missense_Mutation_p.A270V	NM_003312	NP_003303	Q16762	THTR_HUMAN	thiosulfate sulfurtransferase	270	Rhodanese 2.				cyanate catabolic process|rRNA transport	mitochondrial matrix|plasma membrane	5S rRNA binding|thiosulfate sulfurtransferase activity				0						ATCGTACACGGCCACATCAGG	0.642													11	43					0	0	1	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37480389	37480389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:37480389C>T	uc003aqs.1	-	10	1283	c.1169G>A	c.(1168-1170)AGG>AAG	p.R390K	TMPRSS6_uc003aqt.1_Missense_Mutation_p.R381K|TMPRSS6_uc003aqu.2_Missense_Mutation_p.R381K	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	390	CUB 2.|Extracellular (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						ATACTTCTGCCTCCTCAGTGC	0.498													3	28					0	0	1	0	0
IL2RB	3560	broad.mit.edu	37	22	37524243	37524243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:37524243G>A	uc003aqv.1	-	10	1680	c.1549C>T	c.(1549-1551)CCT>TCT	p.P517S		NM_000878	NP_000869	P14784	IL2RB_HUMAN	interleukin 2 receptor beta precursor	517	Cytoplasmic (Potential).				interspecies interaction between organisms|positive regulation of survival gene product expression|protein complex assembly	external side of plasma membrane|integral to plasma membrane	interleukin-2 receptor activity				0					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	CCCTGCCCAGGAGGCCTGGAC	0.632													11	54					0	0	1	0	0
IL2RB	3560	broad.mit.edu	37	22	37538546	37538546	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:37538546C>T	uc003aqv.1	-	4	341	c.210G>A	c.(208-210)TGG>TGA	p.W70*		NM_000878	NP_000869	P14784	IL2RB_HUMAN	interleukin 2 receptor beta precursor	70	Extracellular (Potential).				interspecies interaction between organisms|positive regulation of survival gene product expression|protein complex assembly	external side of plasma membrane|integral to plasma membrane	interleukin-2 receptor activity				0					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	AGGTTTGGTTCCACCGCCTTT	0.582													9	78					0	0	1	0	0
SSTR3	6753	broad.mit.edu	37	22	37603572	37603572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:37603572C>T	uc003ara.2	-	2	333	c.271G>A	c.(271-273)GAG>AAG	p.E91K	SSTR3_uc003arb.2_Missense_Mutation_p.E91K	NM_001051	NP_001042	P32745	SSR3_HUMAN	somatostatin receptor 3	91	Helical; Name=2; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|induction of apoptosis by hormones|negative regulation of cell proliferation	integral to plasma membrane|nonmotile primary cilium	somatostatin receptor activity			lung(1)	1						ATGAAGAGCTCGTCGGCCAGC	0.652													17	77					0	0	1	0	0
ELFN2	114794	broad.mit.edu	37	22	37769438	37769438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:37769438G>A	uc003asq.3	-	3	2923	c.2137C>T	c.(2137-2139)CCC>TCC	p.P713S		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	713	Cytoplasmic (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					TACAGGGCGGGAAAGCTGTGC	0.552													3	12					0	0	1	0	0
CARD10	29775	broad.mit.edu	37	22	37892461	37892461	+	Missense_Mutation	SNP	G	A	A	rs142113268		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:37892461G>A	uc003asx.1	-	13	2057	c.2054C>T	c.(2053-2055)TCG>TTG	p.S685L	CARD10_uc003ast.1_RNA|CARD10_uc003asv.1_5'Flank|CARD10_uc011ank.1_Missense_Mutation_p.S3L|CARD10_uc003asw.1_Missense_Mutation_p.S399L|CARD10_uc003asy.1_Missense_Mutation_p.S685L	NM_014550	NP_055365	Q9BWT7	CAR10_HUMAN	caspase recruitment domain protein 10	685					activation of NF-kappaB-inducing kinase activity|protein complex assembly|regulation of apoptosis	CBM complex	receptor signaling complex scaffold activity			upper_aerodigestive_tract(1)|lung(1)|breast(1)|ovary(1)|prostate(1)|kidney(1)	6	Melanoma(58;0.0574)					CTTACCCTTCGAGTCCATCAG	0.637													5	53					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38119320	38119320	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:38119320C>T	uc003atr.2	+	7	1028	c.757C>T	c.(757-759)CGA>TGA	p.R253*	TRIOBP_uc003atu.2_Nonsense_Mutation_p.R81*|TRIOBP_uc003atq.1_Nonsense_Mutation_p.R253*|TRIOBP_uc003ats.1_Nonsense_Mutation_p.R81*	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	253					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CAGTGGACCTCGAAGCACCAC	0.612													4	19					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38119837	38119837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:38119837G>A	uc003atr.2	+	7	1545	c.1274G>A	c.(1273-1275)CGA>CAA	p.R425Q	TRIOBP_uc003atu.2_Missense_Mutation_p.R253Q|TRIOBP_uc003atq.1_Missense_Mutation_p.R425Q|TRIOBP_uc003ats.1_Missense_Mutation_p.R253Q	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	425					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					AGAGCCACACGAGACAACCCC	0.577													10	62					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120329	38120329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:38120329C>T	uc003atr.2	+	7	2037	c.1766C>T	c.(1765-1767)TCT>TTT	p.S589F	TRIOBP_uc003atu.2_Missense_Mutation_p.S417F|TRIOBP_uc003atq.1_Missense_Mutation_p.S589F|TRIOBP_uc003ats.1_Missense_Mutation_p.S417F	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	589					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					AGAGCCTCCTCTCCCAATAGA	0.582													24	163					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121592	38121592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:38121592C>T	uc003atr.2	+	7	3300	c.3029C>T	c.(3028-3030)TCC>TTC	p.S1010F	TRIOBP_uc003atu.2_Missense_Mutation_p.S838F|TRIOBP_uc003atq.1_Missense_Mutation_p.S1010F|TRIOBP_uc003ats.1_Missense_Mutation_p.S838F	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1010					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCTGAGCCCTCCCAGCCTCCA	0.637													10	119					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121671	38121671	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:38121671C>T	uc003atr.2	+	7	3379	c.3108C>T	c.(3106-3108)GAC>GAT	p.D1036D	TRIOBP_uc003atu.2_Silent_p.D864D|TRIOBP_uc003atq.1_Silent_p.D1036D|TRIOBP_uc003ats.1_Silent_p.D864D	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1036					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					TGCAGCACGACCCCTTCCCCT	0.642													18	101					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121882	38121882	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:38121882C>T	uc003atr.2	+	7	3590	c.3319C>T	c.(3319-3321)CAG>TAG	p.Q1107*	TRIOBP_uc003atu.2_Nonsense_Mutation_p.Q935*|TRIOBP_uc003atq.1_Nonsense_Mutation_p.Q1107*|TRIOBP_uc003ats.1_Nonsense_Mutation_p.Q935*	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1107					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CGAGCCCCTTCAGCTCCCTGC	0.642													8	132					0	0	1	0	0
GCAT	23464	broad.mit.edu	37	22	38211243	38211243	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:38211243C>T	uc003atz.2	+	5	707	c.687C>T	c.(685-687)TTC>TTT	p.F229F	GCAT_uc003aua.1_Silent_p.F255F	NM_014291	NP_055106	O75600	KBL_HUMAN	glycine C-acetyltransferase precursor	229					biosynthetic process|cellular amino acid metabolic process		glycine C-acetyltransferase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups				0	Melanoma(58;0.045)				Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CCCTGGTCTTCATGGATGAAT	0.627													5	36					0	0	1	0	0
MICALL1	85377	broad.mit.edu	37	22	38317994	38317994	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:38317994C>T	uc003aui.2	+	6	669	c.585C>T	c.(583-585)TCC>TCT	p.S195S		NM_033386	NP_203744	Q8N3F8	MILK1_HUMAN	molecule interacting with Rab13	195	LIM zinc-binding.					cytoplasm|cytoskeleton	protein binding|zinc ion binding			breast(1)	1	Melanoma(58;0.045)					GGCGGTGCTCCAGCACCCTGC	0.677													5	93					0	0	1	0	0
PLA2G6	8398	broad.mit.edu	37	22	38509556	38509556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:38509556G>A	uc003auy.1	-	15	2276	c.2140C>T	c.(2140-2142)CCC>TCC	p.P714S	PLA2G6_uc003auz.1_Missense_Mutation_p.P660S|PLA2G6_uc003ava.1_Missense_Mutation_p.P714S|PLA2G6_uc003avb.2_Missense_Mutation_p.P660S|PLA2G6_uc010gxk.1_RNA|BAIAP2L2_uc003auw.2_5'Flank|PLA2G6_uc003aux.1_Missense_Mutation_p.P105L	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	714					cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	AGCTCCCAGGGGTTGCTGGGA	0.607													6	102					0	0	1	0	0
PLA2G6	8398	broad.mit.edu	37	22	38516859	38516859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:38516859C>T	uc003auy.1	-	12	1785	c.1649G>A	c.(1648-1650)CGG>CAG	p.R550Q	PLA2G6_uc003auz.1_Missense_Mutation_p.R496Q|PLA2G6_uc003ava.1_Missense_Mutation_p.R550Q|PLA2G6_uc003avb.2_Missense_Mutation_p.R496Q|PLA2G6_uc010gxk.1_RNA	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	550					cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	CCTGGAGCCCCGGAACACCTC	0.602													7	131					0	0	1	0	0
KCNJ4	3761	broad.mit.edu	37	22	38823004	38823004	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:38823004G>A	uc003avs.1	-	2	1231	c.1134C>T	c.(1132-1134)GCC>GCT	p.A378A	KCNJ4_uc003avt.1_Silent_p.A378A	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	378	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					GGCTCATAAGGGCCAGCTCGT	0.706													6	107					0	0	1	0	0
KCNJ4	3761	broad.mit.edu	37	22	38823255	38823255	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:38823255C>T	uc003avs.1	-	2	980	c.883G>A	c.(883-885)GAG>AAG	p.E295K	KCNJ4_uc003avt.1_Missense_Mutation_p.E295K	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	295	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					GCCGTGGCCTCCACCATGCCC	0.627													8	36					0	0	1	0	0
DMC1	11144	broad.mit.edu	37	22	38948707	38948707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:38948707G>A	uc003avz.1	-	7	560	c.385C>T	c.(385-387)CGT>TGT	p.R129C	DMC1_uc011anv.1_Missense_Mutation_p.R129C|DMC1_uc003awa.1_Missense_Mutation_p.R129C	NM_007068	NP_008999	Q14565	DMC1_HUMAN	DMC1 dosage suppressor of mck1 homolog	129	ATP (Potential).				reciprocal meiotic recombination	condensed nuclear chromosome	ATP binding|DNA binding|DNA-dependent ATPase activity|protein binding			ovary(1)	1	Melanoma(58;0.0286)					TTTCCAGTACGAAATTCTGTG	0.274								Homologous_recombination					8	52					0	0	1	0	0
GTPBP1	9567	broad.mit.edu	37	22	39111957	39111957	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:39111957A>T	uc003awg.2	+	3	504	c.350A>T	c.(349-351)TAC>TTC	p.Y117F		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	117					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					GAGGCCTCCTACGCCACAGTG	0.597													14	86					0	0	1	0	0
GTPBP1	9567	broad.mit.edu	37	22	39112741	39112741	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:39112741C>T	uc003awg.2	+	4	724	c.570C>T	c.(568-570)GGC>GGT	p.G190G		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	190					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					ATGGCCGAGGCTTTGCCCGCC	0.557													14	37					0	0	1	0	0
GTPBP1	9567	broad.mit.edu	37	22	39120346	39120346	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:39120346C>T	uc003awg.2	+	6	1157	c.1003C>T	c.(1003-1005)CGG>TGG	p.R335W		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	335					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					ACCAGGCTGCCGGAAGATCCC	0.542													5	68					0	0	1	0	0
APOBEC3A	200315	broad.mit.edu	37	22	39355623	39355623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:39355623G>A	uc003awn.2	+	2	276	c.106G>A	c.(106-108)GAA>AAA	p.E36K	APOBEC3A_uc011aob.1_Missense_Mutation_p.E18K|APOBEC3A_uc011aoc.1_Missense_Mutation_p.E36K	NM_145699	NP_663745	P31941	ABC3A_HUMAN	phorbolin 1	36					cellular response to xenobiotic stimulus|defense response to virus|DNA cytosine deamination|DNA demethylation|innate immune response|negative regulation of transposition|negative regulation of viral genome replication	cytoplasm|nucleus	cytidine deaminase activity|zinc ion binding			ovary(1)	1	Melanoma(58;0.04)					CCTGTGCTACGAAGTGGAGCG	0.537													11	70					0	0	1	0	0
APOBEC3D	140564	broad.mit.edu	37	22	39427845	39427845	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:39427845C>T	uc011aoe.1	+	6	963	c.909C>T	c.(907-909)TTC>TTT	p.F303F	APOBEC3D_uc011aof.1_Silent_p.F119F|APOBEC3D_uc003awu.3_Silent_p.F119F|APOBEC3D_uc003awt.3_Silent_p.F303F|APOBEC3D_uc010gxu.2_Silent_p.F99F	NM_152426	NP_689639	Q96AK3	ABC3D_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	303					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|zinc ion binding				0	Melanoma(58;0.04)					TGGCCGAGTTCCTGGCCAGGC	0.572													11	81					0	0	1	0	0
ATF4	468	broad.mit.edu	37	22	39918018	39918018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:39918018C>T	uc003axz.2	+	3	747	c.467C>T	c.(466-468)CCC>CTC	p.P156L	ATF4_uc011aol.1_Missense_Mutation_p.P68L|ATF4_uc003aya.2_Missense_Mutation_p.P156L	NM_182810	NP_877962	P18848	ATF4_HUMAN	activating transcription factor 4	156					cellular amino acid metabolic process|gluconeogenesis|positive regulation of transcription from RNA polymerase II promoter|response to endoplasmic reticulum stress|transcription from RNA polymerase II promoter	cytoplasm|plasma membrane	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Melanoma(58;0.04)					CAGGTTGCCCCCTTCACCTTC	0.527													5	111					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	39994235	39994235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:39994235G>A	uc003ayc.2	+	2	316	c.316G>A	c.(316-318)GAC>AAC	p.D106N	CACNA1I_uc003ayd.2_Missense_Mutation_p.D106N|CACNA1I_uc003aye.2_Missense_Mutation_p.D21N|CACNA1I_uc003ayf.2_Missense_Mutation_p.D21N	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	106	I.|Extracellular (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CGACGACATGGACTGCCTGTC	0.478													3	11					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40059777	40059777	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:40059777C>T	uc003ayc.2	+	19	3528	c.3528C>T	c.(3526-3528)GTC>GTT	p.V1176V	CACNA1I_uc003ayd.2_Silent_p.V1141V|CACNA1I_uc003aye.2_Silent_p.V1091V|CACNA1I_uc003ayf.2_Silent_p.V1056V	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1176	Helical; Name=S1 of repeat III; (Potential).|III.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ACTACGTCGTCCTGGCCTTCA	0.632													12	143					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40069012	40069012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:40069012G>A	uc003ayc.2	+	28	4708	c.4708G>A	c.(4708-4710)GAG>AAG	p.E1570K	CACNA1I_uc003ayd.2_Missense_Mutation_p.E1535K|CACNA1I_uc003aye.2_Missense_Mutation_p.E1485K|CACNA1I_uc003ayf.2_Missense_Mutation_p.E1450K	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1570	Helical; Name=S3 of repeat IV; (Potential).|IV.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CACCCTGGAGGAGATCGAGAT	0.612													15	77					0	0	1	0	0
ENTHD1	150350	broad.mit.edu	37	22	40140285	40140285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:40140285G>A	uc003ayg.2	-	7	1474	c.1223C>T	c.(1222-1224)TCA>TTA	p.S408L		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	408										ovary(2)|skin(1)	3	Melanoma(58;0.0749)					AGAAGCAGTTGAAACTAAAAT	0.358													4	18					0	0	1	0	0
FAM83F	113828	broad.mit.edu	37	22	40417787	40417787	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:40417787G>A	uc003ayk.1	+	4	1367	c.1273G>A	c.(1273-1275)GGA>AGA	p.G425R		NM_138435	NP_612444	Q8NEG4	FA83F_HUMAN	hypothetical protein LOC113828	425										breast(1)	1						AAACGGCATGGGAGAAGCGGC	0.672													8	31					0	0	1	0	0
ADSL	158	broad.mit.edu	37	22	40761046	40761046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:40761046C>T	uc003ayp.3	+	12	1413	c.1354C>T	c.(1354-1356)CGT>TGT	p.R452C	ADSL_uc003ays.3_Intron|ADSL_uc003ayq.3_Missense_Mutation_p.R466C|ADSL_uc003ayr.3_Missense_Mutation_p.R228C|ADSL_uc003ayt.3_Missense_Mutation_p.R437C	NM_000026	NP_000017	P30566	PUR8_HUMAN	adenylosuccinate lyase isoform a	452			R -> P (in ADSL deficiency; severe).		AMP biosynthetic process|protein tetramerization|purine base metabolic process	cytosol	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity|N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity			ovary(1)	1						TTTCACTGGTCGTGCCTCCCA	0.488													7	95					0	0	1	0	0
DNAJB7	150353	broad.mit.edu	37	22	41257367	41257367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:41257367C>T	uc003azj.2	-	1	764	c.632G>A	c.(631-633)AGA>AAA	p.R211K	XPNPEP3_uc011aox.1_Intron|XPNPEP3_uc003azh.2_Intron|XPNPEP3_uc003azi.2_Intron|XPNPEP3_uc011aoy.1_5'Flank|XPNPEP3_uc003azg.1_Intron|XPNPEP3_uc003azf.1_Intron|XPNPEP3_uc010gyh.1_5'Flank	NM_145174	NP_660157	Q7Z6W7	DNJB7_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 7	211					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)	1						TTCAGCTTCTCTTTCTTGATC	0.348													6	65					0	0	1	0	0
ZC3H7B	23264	broad.mit.edu	37	22	41745271	41745271	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:41745271C>T	uc003azw.2	+	16	2130	c.1914C>T	c.(1912-1914)ATC>ATT	p.I638I	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	654	C3H1-type 2.				interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						ACAGCTTCATCGAGCTCAAGG	0.652													17	84					0	0	1	0	0
ACO2	50	broad.mit.edu	37	22	41895768	41895768	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:41895768C>T	uc003bac.2	+	2	97	c.75C>T	c.(73-75)GTC>GTT	p.V25V	ACO2_uc003bad.2_Silent_p.V25V	NM_001098	NP_001089	Q99798	ACON_HUMAN	aconitase 2, mitochondrial precursor	25					citrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron ion binding|isocitrate hydro-lyase (cis-aconitate-forming) activity			breast(2)|ovary(1)|lung(1)	4						TGGCCTCAGTCCTGTGCCAAC	0.527													25	247					0	0	1	0	0
XRCC6	2547	broad.mit.edu	37	22	42032201	42032201	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:42032201A>G	uc003bao.1	+	4	350	c.280A>G	c.(280-282)AAA>GAA	p.K94E	XRCC6_uc003bap.1_Intron|XRCC6_uc011apc.1_Missense_Mutation_p.K44E|XRCC6_uc003baq.1_Missense_Mutation_p.K94E|XRCC6_uc003bar.1_Missense_Mutation_p.K94E|XRCC6_uc003bas.1_Missense_Mutation_p.K44E	NM_001469	NP_001460	P12956	XRCC6_HUMAN	ATP-dependent DNA helicase II, 70 kDa subunit	94					DNA ligation|double-strand break repair via nonhomologous end joining|initiation of viral infection|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|provirus integration|telomere maintenance|transcription, DNA-dependent	DNA-dependent protein kinase-DNA ligase 4 complex|Ku70:Ku80 complex|membrane fraction|nuclear telomere cap complex|transcription factor complex	5'-deoxyribose-5-phosphate lyase activity|ATP binding|ATP-dependent DNA helicase activity|double-stranded DNA binding|protein C-terminus binding|transcription regulatory region DNA binding			skin(2)|ovary(1)|lung(1)|kidney(1)	5						CGAGAAAGACAAAAATTCAGT	0.333								Direct_reversal_of_damage|NHEJ					7	41					0	0	1	0	0
SREBF2	6721	broad.mit.edu	37	22	42263103	42263103	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:42263103C>T	uc003bbi.2	+	2	526	c.357C>T	c.(355-357)ACC>ACT	p.T119T	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	119	Gly/Pro/Ser-rich.|Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						TTTCTCCCACCTCAGTTCCCA	0.418													20	100					0	0	1	0	0
WBP2NL	164684	broad.mit.edu	37	22	42415333	42415333	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:42415333G>A	uc011ape.1	+	3	97	c.81G>A	c.(79-81)CCG>CCA	p.P27P	WBP2NL_uc003bbt.2_Silent_p.P27P|WBP2NL_uc011apk.1_Intron|WBP2NL_uc003bbu.2_RNA|WBP2NL_uc003bbv.1_5'Flank	NM_152613	NP_689826	Q6ICG8	WBP2L_HUMAN	WBP2 N-terminal like	27					egg activation|male pronucleus assembly|meiosis	perinuclear theca	WW domain binding			ovary(2)	2						AGCGGTCTCCGAATGTGGAGC	0.398													8	99					0	0	1	0	0
TCF20	6942	broad.mit.edu	37	22	42606538	42606538	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:42606538G>A	uc003bcj.1	-	1	4908	c.4774C>T	c.(4774-4776)CAG>TAG	p.Q1592*	TCF20_uc003bck.1_Nonsense_Mutation_p.Q1592*|TCF20_uc003bnt.2_Nonsense_Mutation_p.Q1592*	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	1592	Nuclear localization signal (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						TTCCTCGGCTGGGCCCCAGGC	0.517													5	103					0	0	1	0	0
TCF20	6942	broad.mit.edu	37	22	42609803	42609803	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:42609803G>A	uc003bcj.1	-	1	1643	c.1509C>T	c.(1507-1509)GGC>GGT	p.G503G	TCF20_uc003bck.1_Silent_p.G503G|TCF20_uc003bnt.2_Silent_p.G503G	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	503					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						GTTGTGAGGAGCCTTCAGAAT	0.512													32	236					0	0	1	0	0
NFAM1	150372	broad.mit.edu	37	22	42782999	42782999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:42782999G>A	uc003bcn.3	-	5	787	c.749C>T	c.(748-750)TCC>TTC	p.S250F		NM_145912	NP_666017	Q8NET5	NFAM1_HUMAN	NFAT activation molecule 1 precursor	250	Cytoplasmic (Potential).				B cell differentiation|inflammatory response|intracellular signal transduction|positive regulation of B cell receptor signaling pathway|positive regulation of cytokine production|positive regulation of sequence-specific DNA binding transcription factor activity	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity				0						GTGTACCTGGGAGAGGGGGCT	0.627													11	108					0	0	1	0	0
SERHL2	253190	broad.mit.edu	37	22	42956258	42956258	+	Silent	SNP	G	A	A	rs150625034		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:42956258G>A	uc003bcr.2	+	8	702	c.600G>A	c.(598-600)ACG>ACA	p.T200T	SERHL_uc011apm.1_Intron|SERHL2_uc011apn.1_Silent_p.T186T|SERHL2_uc010gyz.2_Silent_p.T136T|SERHL2_uc010gyy.2_RNA|SERHL2_uc011apo.1_RNA|RRP7B_uc003bcs.2_Intron	NM_014509	NP_055324	Q9H4I8	SEHL2_HUMAN	serine hydrolase-like 2	200						perinuclear region of cytoplasm|peroxisome	hydrolase activity				0						GAGGAACCACGAAGGTGGCCA	0.443													7	113					0	0	1	0	0
TTLL1	25809	broad.mit.edu	37	22	43442444	43442444	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:43442444T>C	uc003bdi.2	-	10	1355	c.1114A>G	c.(1114-1116)AAG>GAG	p.K372E	TTLL1_uc010gzh.2_Missense_Mutation_p.K343E|TTLL1_uc003bdj.2_Missense_Mutation_p.K258E|TTLL1_uc003bdh.2_Missense_Mutation_p.K334E	NM_012263	NP_036395	O95922	TTLL1_HUMAN	tubulin tyrosine ligase-like family, member 1	372					protein polyglutamylation	cytoplasm|microtubule	ATP binding|tubulin-glutamic acid ligase activity|tubulin-tyrosine ligase activity			skin(1)	1		Ovarian(80;0.0694)		BRCA - Breast invasive adenocarcinoma(115;0.00461)		AGGACTTCCTTAGGTGGCGAC	0.498													5	152					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	43924811	43924811	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:43924811G>A	uc003bdy.1	-	32	4643	c.4428C>T	c.(4426-4428)TTC>TTT	p.F1476F	EFCAB6_uc003bdz.1_Silent_p.F1324F|EFCAB6_uc010gzi.1_Silent_p.F1324F	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1476	Interaction with AR.|Interaction with PARK7.|EF-hand 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CCAGAATATGGAAGAACTCTT	0.507													5	129					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	43950826	43950826	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:43950826T>A	uc003bdy.1	-	27	3786	c.3571A>T	c.(3571-3573)ATG>TTG	p.M1191L	EFCAB6_uc003bdz.1_Missense_Mutation_p.M1039L|EFCAB6_uc010gzi.1_Missense_Mutation_p.M1039L|EFCAB6_uc010gzj.1_Missense_Mutation_p.M417L	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1191	EF-hand 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TTCGTTTTCATGGTGTCAAAA	0.522													10	136					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	44064824	44064824	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:44064824A>G	uc003bdy.1	-	16	1957	c.1742T>C	c.(1741-1743)CTT>CCT	p.L581P	EFCAB6_uc003bdz.1_Missense_Mutation_p.L429P|EFCAB6_uc010gzi.1_Missense_Mutation_p.L429P|EFCAB6_uc010gzj.1_5'Flank|EFCAB6_uc010gzk.1_RNA	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	581					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CTTTGGAACAAGAACTGGAGA	0.403													12	47					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	44079696	44079696	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:44079696G>A	uc003bdy.1	-	12	1397	c.1182C>T	c.(1180-1182)ATC>ATT	p.I394I	EFCAB6_uc003bdz.1_Silent_p.I242I|EFCAB6_uc010gzi.1_Silent_p.I242I|EFCAB6_uc010gzk.1_Intron|EFCAB6_uc011aqa.1_Intron|EFCAB6_uc003bea.1_Silent_p.I391I	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	394					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				ATAACTTTGTGATGATGTTTT	0.348													6	88					0	0	1	0	0
PNPLA5	150379	broad.mit.edu	37	22	44282250	44282250	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:44282250C>T	uc003beg.2	-	6	979	c.882G>A	c.(880-882)TGG>TGA	p.W294*	PNPLA5_uc011aqc.1_Nonsense_Mutation_p.W154*|PNPLA5_uc003beh.2_Nonsense_Mutation_p.W180*	NM_138814	NP_620169	Q7Z6Z6	PLPL5_HUMAN	patatin-like phospholipase domain containing 5	294					lipid catabolic process		hydrolase activity				0		all_neural(38;0.0966)|Ovarian(80;0.105)|Glioma(61;0.222)				GGGGCACTTTCCAGTTGAGAG	0.577													9	58					0	0	1	0	0
PARVB	29780	broad.mit.edu	37	22	44514923	44514923	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:44514923C>T	uc003ben.2	+	4	331	c.279C>T	c.(277-279)CTC>CTT	p.L93L	PARVB_uc003bem.2_Silent_p.L126L|PARVB_uc010gzn.2_Silent_p.L41L|PARVB_uc003beo.2_Silent_p.L56L	NM_013327	NP_037459	Q9HBI1	PARVB_HUMAN	parvin, beta isoform b	93	CH 1.				cell adhesion|cell junction assembly	cytoskeleton|cytosol|focal adhesion	actin binding				0		Ovarian(80;0.0246)|all_neural(38;0.0423)				TGCAGGTCCTCCTCGACTGGA	0.572													7	108					0	0	1	0	0
KIAA1644	85352	broad.mit.edu	37	22	44681565	44681565	+	Silent	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:44681565A>T	uc003bet.2	-	4	475	c.342T>A	c.(340-342)GTT>GTA	p.V114V		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	114	Helical; (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				AAAGGTCCAGAACCAGCAGCA	0.527													14	168					0	0	1	0	0
KIAA1644	85352	broad.mit.edu	37	22	44681590	44681590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:44681590C>T	uc003bet.2	-	4	450	c.317G>A	c.(316-318)GGA>GAA	p.G106E		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	106	Helical; (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				CACGAAAAATCCATAGATCCA	0.527													14	144					0	0	1	0	0
PHF21B	112885	broad.mit.edu	37	22	45287239	45287239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:45287239C>T	uc003bfn.2	-	8	1113	c.962G>A	c.(961-963)AGG>AAG	p.R321K	PHF21B_uc003bfm.2_Missense_Mutation_p.R117K|PHF21B_uc011aqk.1_Missense_Mutation_p.R267K|PHF21B_uc011aql.1_Missense_Mutation_p.R279K|PHF21B_uc011aqm.1_Missense_Mutation_p.R267K	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	321							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		CAGCCGTTTCCTCTGCAGGGA	0.587													3	37					0	0	1	0	0
UPK3A	7380	broad.mit.edu	37	22	45681903	45681903	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:45681903C>T	uc003bfy.2	+	2	140	c.134C>T	c.(133-135)CCT>CTT	p.P45L	UPK3A_uc010gzy.2_Missense_Mutation_p.P45L	NM_006953	NP_008884	O75631	UPK3A_HUMAN	uroplakin 3A precursor	45	Lumenal (Potential).				epithelial cell differentiation	endoplasmic reticulum membrane|integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		TTGGAAAAGCCTCTCTGCATG	0.572													6	53					0	0	1	0	0
SMC1B	27127	broad.mit.edu	37	22	45785615	45785615	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:45785615A>G	uc003bgc.2	-	10	1760	c.1708T>C	c.(1708-1710)TTC>CTC	p.F570L	SMC1B_uc003bgd.2_Missense_Mutation_p.F570L|SMC1B_uc003bge.1_Missense_Mutation_p.F353L	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	570	Flexible hinge.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		AGAGCGAGGAATGTCTCAGGT	0.373													12	50					0	0	1	0	0
SMC1B	27127	broad.mit.edu	37	22	45795121	45795121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:45795121C>T	uc003bgc.2	-	6	1019	c.967G>A	c.(967-969)GAA>AAA	p.E323K	SMC1B_uc003bgd.2_Missense_Mutation_p.E323K|SMC1B_uc003bge.1_Missense_Mutation_p.E106K	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	323	Potential.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		CATTGTTTTTCGCTGTCCTTT	0.383													11	80					0	0	1	0	0
RIBC2	26150	broad.mit.edu	37	22	45813729	45813729	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:45813729C>T	uc011aqs.1	+	4	653	c.444C>T	c.(442-444)TTC>TTT	p.F148F		NM_015653	NP_056468	Q9H4K1	RIBC2_HUMAN	RIB43A domain with coiled-coils 2	80											0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		ATTTAAACTTCCATGAGAGGA	0.448													4	20					0	0	1	0	0
FBLN1	2192	broad.mit.edu	37	22	45938082	45938082	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:45938082C>T	uc003bgj.1	+	10	1261	c.1114C>T	c.(1114-1116)CGC>TGC	p.R372C	FBLN1_uc003bgg.1_Missense_Mutation_p.R372C|FBLN1_uc003bgh.2_Missense_Mutation_p.R372C|FBLN1_uc010gzz.2_Missense_Mutation_p.R410C|FBLN1_uc003bgi.1_Missense_Mutation_p.R372C	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	372	EGF-like 5; calcium-binding.|Self-association and FN1-binding; calcium is necessary for homotypic binding, but not for heterotypic binding.				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		GAAGGGACATCGCTGCGTGAA	0.557													37	162					0	0	1	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654184	46654184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:46654184C>T	uc003bhh.2	-	1	5036	c.5036G>A	c.(5035-5037)CGA>CAA	p.R1679Q		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1679	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GCCTCGGATTCGGACGATCTG	0.423													8	59					0	0	1	0	0
TTC38	55020	broad.mit.edu	37	22	46671288	46671288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:46671288C>T	uc003bhi.2	+	5	585	c.509C>T	c.(508-510)CCC>CTC	p.P170L	TTC38_uc011aqx.1_Intron	NM_017931	NP_060401	Q5R3I4	TTC38_HUMAN	tetratricopeptide repeat domain 38	170							binding			ovary(1)	1						CGAATTTACCCCTTCTGGACA	0.438													4	103					0	0	1	0	0
CELSR1	9620	broad.mit.edu	37	22	46790096	46790096	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:46790096G>A	uc003bhw.1	-	14	5907	c.5907C>T	c.(5905-5907)GCC>GCT	p.A1969A	CELSR1_uc011arc.1_Silent_p.A290A	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1969	Extracellular (Potential).|EGF-like 7; calcium-binding.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CTTTGCTGACGGCACAGTGGC	0.587													5	68					0	0	1	0	0
CELSR1	9620	broad.mit.edu	37	22	46792579	46792579	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:46792579G>T	uc003bhw.1	-	13	5766	c.5766C>A	c.(5764-5766)TGC>TGA	p.C1922*	CELSR1_uc011arc.1_Nonsense_Mutation_p.C243*	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1922	Extracellular (Potential).|EGF-like 6; calcium-binding.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		GGGAGCGCACGCAGGCCCCCA	0.617													6	16					0.00307968	0.00310507	1	1	0
CELSR1	9620	broad.mit.edu	37	22	46931916	46931916	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:46931916G>A	uc003bhw.1	-	1	1152	c.1152C>T	c.(1150-1152)ATC>ATT	p.I384I		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	384	Extracellular (Potential).|Cadherin 2.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		AGTTGGCGTTGATGGGCGAGT	0.682													6	22					0	0	1	0	0
TBC1D22A	25771	broad.mit.edu	37	22	47193361	47193361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:47193361C>T	uc003bib.2	+	4	616	c.481C>T	c.(481-483)CCT>TCT	p.P161S	TBC1D22A_uc010haf.2_Missense_Mutation_p.P131S|TBC1D22A_uc003bic.2_Intron|TBC1D22A_uc003bie.2_Intron|TBC1D22A_uc003bid.2_RNA|TBC1D22A_uc010hag.2_RNA|TBC1D22A_uc003bif.2_Missense_Mutation_p.P114S	NM_014346	NP_055161	Q8WUA7	TB22A_HUMAN	TBC1 domain family, member 22A	161						intracellular	protein homodimerization activity|Rab GTPase activator activity			ovary(1)	1		all_cancers(38;4.44e-05)|all_epithelial(38;0.000507)|Breast(42;0.0488)|all_lung(38;0.0682)|Ovarian(80;0.0731)|all_neural(38;0.0966)|Glioma(61;0.222)|Lung SC(80;0.236)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0347)|BRCA - Breast invasive adenocarcinoma(115;0.231)		CGATGCCGCCCCTCTGCAGAG	0.637											OREG0026659	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	86					0	0	1	0	0
MLC1	23209	broad.mit.edu	37	22	50521574	50521574	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50521574G>A	uc003bjg.1	-	3	479	c.206C>T	c.(205-207)TCG>TTG	p.S69L	MLC1_uc011arl.1_Missense_Mutation_p.S69L|MLC1_uc003bjh.1_Missense_Mutation_p.S69L|MLC1_uc011arm.1_Intron|MLC1_uc011arn.1_5'UTR|MLC1_uc011aro.1_Missense_Mutation_p.S69L	NM_139202	NP_631941	Q15049	MLC1_HUMAN	megalencephalic leukoencephalopathy with	69	Helical; (Potential).					basolateral plasma membrane|endosome|integral to membrane|integral to membrane of membrane fraction	ion channel activity			pancreas(1)	1		all_cancers(38;7.69e-11)|all_epithelial(38;9.52e-10)|all_lung(38;3.67e-05)|Breast(42;0.000776)|Lung NSC(38;0.000946)|Ovarian(80;0.0365)|Lung SC(80;0.113)		READ - Rectum adenocarcinoma(2;0.000669)|Colorectal(2;0.00242)|LUAD - Lung adenocarcinoma(64;0.0695)|BRCA - Breast invasive adenocarcinoma(115;0.216)		CAGGTACAGCGAAAACCCCGA	0.607													6	72					0	0	1	0	0
MLC1	23209	broad.mit.edu	37	22	50523257	50523257	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50523257G>A	uc003bjg.1	-	2	348	c.75C>T	c.(73-75)CCC>CCT	p.P25P	MLC1_uc011arl.1_Silent_p.P25P|MLC1_uc003bjh.1_Silent_p.P25P|MLC1_uc011arm.1_Silent_p.P25P|MLC1_uc011arn.1_Intron|MLC1_uc011aro.1_Silent_p.P25P	NM_139202	NP_631941	Q15049	MLC1_HUMAN	megalencephalic leukoencephalopathy with	25				P -> H (in Ref. 8; AAH28425).		basolateral plasma membrane|endosome|integral to membrane|integral to membrane of membrane fraction	ion channel activity			pancreas(1)	1		all_cancers(38;7.69e-11)|all_epithelial(38;9.52e-10)|all_lung(38;3.67e-05)|Breast(42;0.000776)|Lung NSC(38;0.000946)|Ovarian(80;0.0365)|Lung SC(80;0.113)		READ - Rectum adenocarcinoma(2;0.000669)|Colorectal(2;0.00242)|LUAD - Lung adenocarcinoma(64;0.0695)|BRCA - Breast invasive adenocarcinoma(115;0.216)		CATAGCTGGCGGGGTCTTGCC	0.647													9	51					0	0	1	0	0
MOV10L1	54456	broad.mit.edu	37	22	50553578	50553578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50553578G>A	uc003bjj.2	+	8	1245	c.1162G>A	c.(1162-1164)GAC>AAC	p.D388N	MOV10L1_uc003bjk.3_Missense_Mutation_p.D388N|MOV10L1_uc011arp.1_Missense_Mutation_p.D368N|MOV10L1_uc011arq.1_Missense_Mutation_p.D149N|MOV10L1_uc010hao.1_RNA	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	388					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		TGGAGAAAAAGACAACATTCT	0.418													4	148					0	0	1	0	0
MOV10L1	54456	broad.mit.edu	37	22	50558962	50558962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50558962C>T	uc003bjj.2	+	10	1569	c.1486C>T	c.(1486-1488)CCC>TCC	p.P496S	MOV10L1_uc003bjk.3_Missense_Mutation_p.P496S|MOV10L1_uc011arp.1_Missense_Mutation_p.P476S|MOV10L1_uc011arq.1_Missense_Mutation_p.P257S|MOV10L1_uc010hao.1_Intron	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	496					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		AAGTTTTCTTCCCCAATATCC	0.363													11	70					0	0	1	0	0
MOV10L1	54456	broad.mit.edu	37	22	50596549	50596549	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50596549C>T	uc003bjj.2	+	23	3213	c.3130C>T	c.(3130-3132)CTG>TTG	p.L1044L	MOV10L1_uc003bjk.3_Silent_p.L1044L|MOV10L1_uc011arp.1_Silent_p.L1024L|MOV10L1_uc003bjl.2_Silent_p.L171L|MOV10L1_uc003bjm.1_Silent_p.L87L	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	1044					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		CGTCCAGGTCCTGCGCTACTG	0.602													18	60					0	0	1	0	0
MOV10L1	54456	broad.mit.edu	37	22	50599252	50599252	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50599252C>T	uc003bjj.2	+	25	3543	c.3460C>T	c.(3460-3462)CGA>TGA	p.R1154*	MOV10L1_uc003bjk.3_Intron|MOV10L1_uc011arp.1_Nonsense_Mutation_p.R1134*|MOV10L1_uc003bjl.2_Nonsense_Mutation_p.R281*	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	1154					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		TGTTCTCGTTCGAGTGAGTTT	0.507													6	71					0	0	1	0	0
MOV10L1	54456	broad.mit.edu	37	22	50599417	50599417	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50599417G>A	uc003bjj.2	+	26	3570	c.3487G>A	c.(3487-3489)GAA>AAA	p.E1163K	MOV10L1_uc003bjk.3_Missense_Mutation_p.E1117K|MOV10L1_uc011arp.1_Intron|MOV10L1_uc003bjl.2_Missense_Mutation_p.E290K	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	1163					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		TGCTTTGCTGGAATACAGTAT	0.502													9	196					0	0	1	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50659030	50659030	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50659030C>T	uc003bkb.1	-	16	4270	c.3758G>A	c.(3757-3759)GGG>GAG	p.G1253E	TUBGCP6_uc003bka.1_Missense_Mutation_p.G340E|TUBGCP6_uc010har.1_Missense_Mutation_p.G1245E|TUBGCP6_uc010has.1_RNA	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	1253	9 X 27 AA tandem repeats.|9.				G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		CACAGGCTCCCCCAAGCTGAT	0.632													4	39					0	0	1	0	0
PLXNB2	23654	broad.mit.edu	37	22	50719043	50719043	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50719043G>A	uc003bkv.3	-	25	4156	c.4050C>T	c.(4048-4050)TTC>TTT	p.F1350F	PLXNB2_uc003bkt.1_Silent_p.F142F|PLXNB2_uc003bku.1_Silent_p.F335F	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1350	Cytoplasmic (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GCAGGGACGCGAAGTAGACCT	0.642													8	62					0	0	1	0	0
PLXNB2	23654	broad.mit.edu	37	22	50728538	50728538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50728538G>A	uc003bkv.3	-	3	582	c.476C>T	c.(475-477)TCC>TTC	p.S159F		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	159	Extracellular (Potential).|Sema.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		AGGACCCGTGGAGCTCACCAG	0.622													4	22					0	0	1	0	0
FAM116B	414918	broad.mit.edu	37	22	50755728	50755728	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50755728G>A	uc011aru.1	-	6	519	c.447C>T	c.(445-447)TTC>TTT	p.F149F	FAM116B_uc011arv.1_Silent_p.F149F	NM_001001794	NP_001001794	Q8NEG7	F116B_HUMAN	family with sequence similarity 116, member B	149											0		all_cancers(38;4.34e-09)|all_epithelial(38;3.03e-08)|all_lung(38;0.00141)|Breast(42;0.00387)|Lung NSC(38;0.0199)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GCACCTTCTGGAAGTAGCCCC	0.637													10	30					0	0	1	0	0
SAPS2	9701	broad.mit.edu	37	22	50845250	50845250	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50845250C>T	uc003blb.1	+	5	782	c.360C>T	c.(358-360)CTC>CTT	p.L120L	SAPS2_uc003bky.1_Silent_p.L120L|SAPS2_uc003bkz.1_Silent_p.L120L|SAPS2_uc003blc.2_Silent_p.L120L|SAPS2_uc003bla.1_Silent_p.L120L	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	120						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		ATCCTCTGCTCGCCAGTTTTT	0.557													27	360					0	0	1	0	0
SAPS2	9701	broad.mit.edu	37	22	50876645	50876645	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50876645C>T	uc003blb.1	+	19	2304	c.1882C>T	c.(1882-1884)CAG>TAG	p.Q628*	SAPS2_uc003bky.1_Nonsense_Mutation_p.Q601*|SAPS2_uc003bkz.1_Nonsense_Mutation_p.Q601*|SAPS2_uc003blc.2_Nonsense_Mutation_p.Q628*|SAPS2_uc003bla.1_Nonsense_Mutation_p.Q602*|SAPS2_uc003bld.1_Nonsense_Mutation_p.Q160*	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	628						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		TGACCGCATCCAGCCCTTTGA	0.622													27	139					0	0	1	0	0
SAPS2	9701	broad.mit.edu	37	22	50878419	50878419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50878419C>T	uc003blb.1	+	22	2737	c.2315C>T	c.(2314-2316)CCG>CTG	p.P772L	SAPS2_uc003bky.1_Missense_Mutation_p.P746L|SAPS2_uc003bkz.1_Missense_Mutation_p.P745L|SAPS2_uc003blc.2_Missense_Mutation_p.P772L|SAPS2_uc003bla.1_Missense_Mutation_p.P746L|SAPS2_uc003bld.1_Missense_Mutation_p.P305L	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	772						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		TGCAGCTCTCCGGTGGACACA	0.642													5	47					0	0	1	0	0
KLHDC7B	113730	broad.mit.edu	37	22	50987925	50987925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:50987925G>A	uc003bmi.2	+	1	1464	c.1330G>A	c.(1330-1332)GAG>AAG	p.E444K		NM_138433	NP_612442	Q96G42	KLD7B_HUMAN	kelch domain containing 7B	444	Kelch 3.									central_nervous_system(1)	1		all_cancers(38;1.53e-10)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		OV - Ovarian serous cystadenocarcinoma(4;7.49e-69)|all cancers(3;9.79e-66)|Epithelial(4;1.3e-63)|GBM - Glioblastoma multiforme(4;0.000399)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		TGTGGCCCACGAGGCTGTGGC	0.672													19	101					0	0	1	0	0
MAPK8IP2	23542	broad.mit.edu	37	22	51040272	51040272	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:51040272C>T	uc003bmx.2	+	2	237	c.120C>T	c.(118-120)ATC>ATT	p.I40I	MAPK8IP2_uc003bmy.2_5'Flank	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	40					behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		TGTCTGAGATCACTGATGACT	0.562													9	78					0	0	1	0	0
ARSA	410	broad.mit.edu	37	22	51065086	51065086	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:51065086G>A	uc003bnb.3	-	5	1034	c.781C>T	c.(781-783)CTG>TTG	p.L261L	ARSA_uc003bna.3_Silent_p.L177L|ARSA_uc003bnc.3_Silent_p.L261L|ARSA_uc003bnd.3_Silent_p.L261L|ARSA_uc003bmz.3_Silent_p.L261L|ARSA_uc010hbf.2_3'UTR	NM_001085426	NP_001078895	P15289	ARSA_HUMAN	arylsulfatase A isoform a precursor	261						lysosome	arylsulfatase activity|calcium ion binding|cerebroside-sulfatase activity			pancreas(1)|skin(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)	Micafungin(DB01141)	GCTGTCATCAGGGTCCCCACA	0.622													4	42					0	0	1	0	0
ACR	49	broad.mit.edu	37	22	51178159	51178159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr22:51178159G>A	uc003bnh.3	+	3	331	c.319G>A	c.(319-321)GAA>AAA	p.E107K	uc003bng.2_5'Flank|ACR_uc010hbh.1_Missense_Mutation_p.E107K	NM_001097	NP_001088	P10323	ACRO_HUMAN	acrosin precursor	107	Peptidase S1.				acrosome matrix dispersal|activation of adenylate cyclase activity	acrosomal matrix|protein complex	amidase activity|copper ion binding|DNA binding|drug binding|fucose binding|mannose binding|protein binding|serine-type endopeptidase activity|zinc ion binding				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;1.1e-06)|LUAD - Lung adenocarcinoma(64;0.247)		CGGAGCAAAGGAAATTACATA	0.468													15	98					0	0	1	0	0
CHL1	10752	broad.mit.edu	37	3	440029	440029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:440029G>A	uc003bou.2	+	24	3437	c.3166G>A	c.(3166-3168)GAT>AAT	p.D1056N	CHL1_uc003bot.2_Missense_Mutation_p.D1072N|CHL1_uc003bow.1_Missense_Mutation_p.D1056N|CHL1_uc011asi.1_Intron	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	1056	Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		GGGCGATAATGATAGCATTTT	0.383													6	26					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	2908473	2908473	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:2908473C>A	uc003bpc.2	+	7	713	c.492C>A	c.(490-492)TCC>TCA	p.S164S	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Silent_p.S164S	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	164	Ig-like C2-type 2.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AATACCCTTCCTATCAGGATA	0.378													7	28					2.17888e-05	2.20449e-05	1	1	0
CNTN4	152330	broad.mit.edu	37	3	2942450	2942450	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:2942450G>A	uc003bpc.2	+	10	1243	c.1022G>A	c.(1021-1023)GGA>GAA	p.G341E	CNTN4_uc003bpb.1_Missense_Mutation_p.G13E|CNTN4_uc003bpd.1_Missense_Mutation_p.G341E|CNTN4_uc003bpe.2_Missense_Mutation_p.G13E|CNTN4_uc003bpf.2_Missense_Mutation_p.G13E	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	341	Ig-like C2-type 4.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AAAGCAAATGGAAGGCCTAAG	0.388													5	30					0	0	1	0	0
IL5RA	3568	broad.mit.edu	37	3	3139882	3139882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:3139882G>A	uc011ask.1	-	7	1104	c.460C>T	c.(460-462)CAC>TAC	p.H154Y	IL5RA_uc010hbq.2_Missense_Mutation_p.H154Y|IL5RA_uc010hbr.2_Intron|IL5RA_uc010hbs.2_Missense_Mutation_p.H154Y|IL5RA_uc011asl.1_Missense_Mutation_p.H154Y|IL5RA_uc011asm.1_Missense_Mutation_p.H154Y|IL5RA_uc010hbt.2_Missense_Mutation_p.H154Y|IL5RA_uc011asn.1_Missense_Mutation_p.H154Y|IL5RA_uc010hbu.2_Missense_Mutation_p.H154Y	NM_000564	NP_000555	Q01344	IL5RA_HUMAN	interleukin 5 receptor, alpha isoform 1	154	Extracellular (Potential).				cell proliferation	extracellular space|integral to membrane|plasma membrane	interleukin-5 receptor activity			ovary(1)	1				Epithelial(13;0.00278)|all cancers(10;0.00809)|OV - Ovarian serous cystadenocarcinoma(96;0.00944)		CAGGTGCAGTGAAGGGAAACT	0.423													4	48					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4741596	4741596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:4741596C>T	uc003bqa.2	+	35	4828	c.4480C>T	c.(4480-4482)CCC>TCC	p.P1494S	ITPR1_uc010hca.1_Missense_Mutation_p.P1479S|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.P425S	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1503	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		CTTCAGCTCTCCCTTCTCAGA	0.438													6	37					0	0	1	0	0
THUMPD3	25917	broad.mit.edu	37	3	9406785	9406786	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:9406785_9406786CC>TT	uc003bro.3	+	2	181_182	c.33_34CC>TT	c.(31-36)CTCCTA>CTTTTA	p.11_12LL>LL	LOC440944_uc003brm.2_Intron|THUMPD3_uc003brn.3_Silent_p.11_12LL>LL	NM_001114092	NP_001107564	Q9BV44	THUM3_HUMAN	THUMP domain containing 3	11_12							methyltransferase activity|protein binding|RNA binding			ovary(1)	1	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.101)		CTAACCAACTCCTAGATGTGAA	0.431													5	71					0	0	1	0	0
MTMR14	64419	broad.mit.edu	37	3	9724895	9724895	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:9724895C>T	uc003brz.2	+	10	1055	c.931C>T	c.(931-933)CTG>TTG	p.L311L	MTMR14_uc003bsa.2_Silent_p.L311L|MTMR14_uc003bsb.2_Silent_p.L311L|MTMR14_uc011ath.1_RNA|MTMR14_uc010hcl.2_Silent_p.L65L|MTMR14_uc003bsc.2_RNA	NM_001077525	NP_001070993	Q8NCE2	MTMRE_HUMAN	jumpy isoform 2	311						perinuclear region of cytoplasm|ruffle	phosphatidylinositol-3-phosphatase activity|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(99;0.227)					ACAAAACTACCTGAAGCTGCT	0.428													4	54					0	0	1	0	0
CPNE9	151835	broad.mit.edu	37	3	9768817	9768817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:9768817G>A	uc003bsd.2	+	19	1594	c.1423G>A	c.(1423-1425)GAT>AAT	p.D475N		NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	475	VWFA.									ovary(2)	2	Medulloblastoma(99;0.227)					GTTGGACGGTGATGATGTGCG	0.597													10	119					0	0	1	0	0
CAMK1	8536	broad.mit.edu	37	3	9799447	9799447	+	Silent	SNP	C	T	T	rs141116659		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:9799447C>T	uc003bst.2	-	11	1174	c.996G>A	c.(994-996)GCG>GCA	p.A332A	OGG1_uc003bsk.2_Intron|OGG1_uc003bsl.2_Intron|OGG1_uc003bsm.2_Intron|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|CAMK1_uc003bsu.2_RNA|CAMK1_uc003bss.2_Silent_p.A106A|uc003bsv.1_5'Flank	NM_003656	NP_003647	Q14012	KCC1A_HUMAN	calcium/calmodulin-dependent protein kinase I	332					cell differentiation|nervous system development|positive regulation of muscle cell differentiation|signal transduction	cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|skin(1)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.0475)		CCCCATGGCTCGCCGTCTGCC	0.652													4	41					0	0	1	0	0
TADA3	10474	broad.mit.edu	37	3	9831593	9831593	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:9831593G>A	uc003bsx.1	-	3	810	c.262C>T	c.(262-264)CGA>TGA	p.R88*	TADA3_uc010hcn.1_Nonsense_Mutation_p.R88*|TADA3_uc003bsy.2_Nonsense_Mutation_p.R88*|ARPC4_uc003bsz.1_5'Flank|ARPC4_uc003bta.1_5'Flank|ARPC4_uc003btb.1_5'Flank|ARPC4_uc003btc.1_5'Flank	NM_006354	NP_006345	O75528	TADA3_HUMAN	transcriptional adaptor 3 isoform a	88					estrogen receptor signaling pathway|histone H3 acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	ligand-dependent nuclear receptor binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity				0						TCATGGTCTCGACCCAGCTTC	0.557													7	79					0	0	1	0	0
IL17RC	84818	broad.mit.edu	37	3	9959256	9959256	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:9959256G>C	uc003bua.2	+	1	493	c.257G>C	c.(256-258)AGG>ACG	p.R86T	CIDEC_uc003bto.2_Intron|IL17RC_uc010hcr.2_Intron|IL17RC_uc011ato.1_Intron|IL17RC_uc010hcs.2_Intron|IL17RC_uc003btz.2_Intron|IL17RC_uc011atp.1_Intron|IL17RC_uc003bud.2_Intron|IL17RC_uc003bub.2_Intron|IL17RC_uc010hct.2_Intron|IL17RC_uc010hcu.2_Intron|IL17RC_uc010hcv.2_Intron|IL17RC_uc011atq.1_Intron|IL17RC_uc003buc.2_Intron	NM_153461	NP_703191	Q8NAC3	I17RC_HUMAN	interleukin 17 receptor C isoform 1 precursor	86	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|pancreas(1)	2						GAACGGGGAAGGGGCAAGAGC	0.567													8	81					0	0	1	0	0
FANCD2	2177	broad.mit.edu	37	3	10089602	10089602	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:10089602T>C	uc003buw.2	+	16	1358	c.1280T>C	c.(1279-1281)GTT>GCT	p.V427A	FANCD2_uc003bux.1_Missense_Mutation_p.V427A|FANCD2_uc003buy.1_Missense_Mutation_p.V427A|FANCD2_uc010hcw.1_5'Flank	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	427					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		CCACTCAAGGTTCTTAAGGAT	0.408			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				6	171					0	0	1	0	0
C3orf24	115795	broad.mit.edu	37	3	10146351	10146351	+	Silent	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:10146351G>T	uc003buz.2	-	2	333	c.108C>A	c.(106-108)TCC>TCA	p.S36S	C3orf24_uc003bva.1_Silent_p.S36S	NM_173472	NP_775743	Q96PS1	CC024_HUMAN	hypothetical protein LOC115795	36											0				OV - Ovarian serous cystadenocarcinoma(96;0.196)		GGAAGCAGGGGGAGGCCTTGA	0.562													5	77					4.096e-09	4.15259e-09	1	1	0
C3orf24	115795	broad.mit.edu	37	3	10146467	10146467	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:10146467C>T	uc003buz.2	-	2	218	c.-7_splice	c.e2-1		C3orf24_uc003bva.1_Intron	NM_173472	NP_775743	Q96PS1	CC024_HUMAN	hypothetical protein LOC115795												0				OV - Ovarian serous cystadenocarcinoma(96;0.196)		ATTGACAGTCCTAAAGGAGGG	0.488													4	64					0	0	1	0	0
IRAK2	3656	broad.mit.edu	37	3	10283842	10283842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:10283842G>A	uc003bve.1	+	13	1884	c.1808G>A	c.(1807-1809)AGG>AAG	p.R603K		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	603					activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						GAGGCCAAAAGGAAACTGATG	0.418													4	60					0	0	1	0	0
TATDN2	9797	broad.mit.edu	37	3	10291130	10291130	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:10291130C>T	uc003bvg.2	+	2	827	c.246C>T	c.(244-246)TCC>TCT	p.S82S	TATDN2_uc003bvf.2_Silent_p.S82S|TATDN2_uc011atr.1_Silent_p.S82S|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	82						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						ACTCCTCCTCCTCCTTCTCCC	0.632													12	168					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10400425	10400425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:10400425C>T	uc003bvt.2	-	14	2525	c.2086G>A	c.(2086-2088)GAA>AAA	p.E696K	ATP2B2_uc003bvv.2_Missense_Mutation_p.E651K|ATP2B2_uc003bvw.2_Missense_Mutation_p.E651K|ATP2B2_uc010hdo.2_Missense_Mutation_p.E401K	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	696	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CAGGTGAGTTCGTTGAGGATG	0.657													4	36					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10428192	10428192	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:10428192C>T	uc003bvt.2	-	7	1351	c.912G>A	c.(910-912)GTG>GTA	p.V304V	ATP2B2_uc003bvv.2_Intron|ATP2B2_uc003bvw.2_Intron|ATP2B2_uc010hdo.2_Intron	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	304	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CCCCCTTCTTCACACCTGTGT	0.408													9	52					0	0	1	0	0
HRH1	3269	broad.mit.edu	37	3	11301609	11301609	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:11301609G>A	uc010hdr.2	+	2	1228	c.886G>A	c.(886-888)GAA>AAA	p.E296K	HRH1_uc010hds.2_Missense_Mutation_p.E296K|HRH1_uc010hdt.2_Missense_Mutation_p.E296K|HRH1_uc003bwb.3_Missense_Mutation_p.E296K	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	296	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	GGATGATAGAGAAGTAGACAA	0.512													4	73					0	0	1	0	0
SYN2	6854	broad.mit.edu	37	3	12208797	12208797	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:12208797C>T	uc003bwm.2	+	12	1208	c.1044C>T	c.(1042-1044)GCC>GCT	p.A348A	SYN2_uc003bwl.1_Silent_p.A348A|SYN2_uc003bwn.2_Silent_p.A22A	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	348					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						AGCAGATTGCCATGTCAGACA	0.512													12	149					0	0	1	0	0
PPARG	5468	broad.mit.edu	37	3	12434237	12434237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:12434237G>A	uc003bwx.2	+	4	696	c.605G>A	c.(604-606)GGG>GAG	p.G202E	PPARG_uc003bwr.2_Missense_Mutation_p.G174E|PPARG_uc003bws.2_Missense_Mutation_p.G174E|PPARG_uc003bwu.2_Missense_Mutation_p.G174E|PPARG_uc003bwv.2_Missense_Mutation_p.G174E|PPARG_uc010hea.1_RNA|PPARG_uc003bwq.1_Missense_Mutation_p.G174E|PPARG_uc003bwt.1_Missense_Mutation_p.G174E|PPARG_uc003bww.1_Missense_Mutation_p.G202E	NM_015869	NP_056953	P37231	PPARG_HUMAN	peroxisome proliferative activated receptor	202	Nuclear receptor.				activation of caspase activity|cell fate commitment|cell maturation|cellular response to insulin stimulus|epithelial cell differentiation|glucose homeostasis|induction of apoptosis|innate immune response|lipid homeostasis|lipoprotein transport|long-chain fatty acid transport|low-density lipoprotein particle receptor biosynthetic process|monocyte differentiation|negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|placenta development|positive regulation of fat cell differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to lipid|response to low-density lipoprotein particle stimulus|white fat cell differentiation	cytosol|nucleoplasm	activating transcription factor binding|arachidonic acid binding|drug binding|enzyme binding|prostaglandin receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|kidney(1)	2					Atorvastatin(DB01076)|Icosapent(DB00159)|Pioglitazone(DB01132)|Rosiglitazone(DB00412)|Troglitazone(DB00197)	CTTGCAGTGGGGATGTCTCAT	0.378			T	PAX8	follicular thyroid		Insulin resistance ; lipodystrophy|familial partial L;diabetes mellitus|insulin-resistantI|with acanthosis nigricans and hypertension						6	56					0	0	1	0	0
TMEM40	55287	broad.mit.edu	37	3	12784000	12784000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:12784000C>T	uc003bxg.1	-	5	435	c.308G>A	c.(307-309)GGG>GAG	p.G103E	TMEM40_uc003bxh.1_Missense_Mutation_p.G73E|TMEM40_uc003bxi.1_Missense_Mutation_p.G27E|TMEM40_uc011auv.1_Missense_Mutation_p.G119E	NM_018306	NP_060776	Q8WWA1	TMM40_HUMAN	transmembrane protein 40	103						integral to membrane					0						CTCCCCATGCCCAGGACCTGG	0.507													7	79					0	0	1	0	0
IQSEC1	9922	broad.mit.edu	37	3	12962040	12962040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:12962040G>A	uc003bxt.2	-	6	1961	c.1952C>T	c.(1951-1953)ACC>ATC	p.T651I	IQSEC1_uc003bxu.3_Missense_Mutation_p.T529I|IQSEC1_uc011auw.1_Missense_Mutation_p.T637I	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	651	SEC7.				regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						GATGAAAATGGTGTCTGGGTT	0.597													9	86					0	0	1	0	0
WNT7A	7476	broad.mit.edu	37	3	13860804	13860804	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:13860804C>T	uc003bye.1	-	4	992	c.687G>A	c.(685-687)AAG>AAA	p.K229K		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	229					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						TGTACTTGTCCTTGAGCACGT	0.597													8	64					0	0	1	0	0
C3orf20	84077	broad.mit.edu	37	3	14746042	14746042	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:14746042C>T	uc003byy.2	+	7	1481	c.1077C>T	c.(1075-1077)TTC>TTT	p.F359F	C3orf20_uc003byz.2_Silent_p.F237F|C3orf20_uc003bza.2_Silent_p.F237F|C3orf20_uc003byx.1_Nonsense_Mutation_p.Q311*	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	359						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						ACCATCATTTCAGTCAGCATT	0.498													18	179					0	0	1	0	0
C3orf20	84077	broad.mit.edu	37	3	14814329	14814329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:14814329C>T	uc003byy.2	+	17	3066	c.2662C>T	c.(2662-2664)CTC>TTC	p.L888F	C3orf20_uc003byz.2_Missense_Mutation_p.L766F|C3orf20_uc003bza.2_Missense_Mutation_p.L766F|C3orf20_uc003bzb.1_3'UTR|C3orf20_uc011avj.1_Missense_Mutation_p.L215F	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	888						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						GCTACATCCTCTCAGCAGGGA	0.602													5	41					0	0	1	0	0
FGD5	152273	broad.mit.edu	37	3	14939527	14939527	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:14939527C>T	uc003bzc.2	+	6	3101	c.2991C>T	c.(2989-2991)TTC>TTT	p.F997F	FGD5_uc011avk.1_Silent_p.F997F|FGD5_uc003bzd.2_Silent_p.F75F	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	997	DH.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						TCCTGCAGTTCGACAGGTACC	0.602													9	98					0	0	1	0	0
CAPN7	23473	broad.mit.edu	37	3	15265034	15265034	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:15265034C>T	uc003bzn.2	+	6	961	c.691C>T	c.(691-693)CTG>TTG	p.L231L		NM_014296	NP_055111	Q9Y6W3	CAN7_HUMAN	calpain 7	231					proteolysis	nucleus	calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1						GAATGTTGACCTGAGAGAACG	0.318													4	45					0	0	1	0	0
COLQ	8292	broad.mit.edu	37	3	15512123	15512123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:15512123C>T	uc003bzx.2	-	11	763	c.637G>A	c.(637-639)GGT>AGT	p.G213S	COLQ_uc003bzv.2_Missense_Mutation_p.G203S|COLQ_uc003bzz.2_Missense_Mutation_p.G204S|COLQ_uc010heo.2_Missense_Mutation_p.G179S|COLQ_uc003cac.1_RNA|COLQ_uc003cae.1_Missense_Mutation_p.G72S|COLQ_uc003cad.1_RNA	NM_005677	NP_005668	Q9Y215	COLQ_HUMAN	acetylcholinesterase collagen-like tail subunit	213	Collagen-like 1.				acetylcholine catabolic process in synaptic cleft|asymmetric protein localization	basal lamina|cell junction|collagen|extracellular space|synaptic cleft					0						CCCATTTCACCCTGGAAAGAA	0.532													8	104					0	0	1	0	0
GALNTL2	117248	broad.mit.edu	37	3	16250070	16250070	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:16250070C>T	uc003car.3	+	4	1447	c.972C>T	c.(970-972)CCC>CCT	p.P324P	GALNTL2_uc003caq.3_Silent_p.P57P	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	324	Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						AGTATTACCCCTCAAAGGACC	0.512													10	107					0	0	1	0	0
RFTN1	23180	broad.mit.edu	37	3	16358425	16358425	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:16358425C>T	uc003cay.2	-	10	1929	c.1647G>A	c.(1645-1647)GGG>GGA	p.G549G	RFTN1_uc010hes.2_Silent_p.G513G|OXNAD1_uc003cax.2_Intron|OXNAD1_uc011awb.1_Intron	NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	549						plasma membrane				ovary(3)|central_nervous_system(1)	4						CAGTGCAAATCCCCACCAGGG	0.607													12	122					0	0	1	0	0
PLCL2	23228	broad.mit.edu	37	3	17131301	17131301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:17131301C>T	uc011awc.1	+	9	3362	c.3257C>T	c.(3256-3258)TCA>TTA	p.S1086L	PLCL2_uc011awd.1_Missense_Mutation_p.S968L	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	1094					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						GCTGCTGTTTCATGTGGACTG	0.413													8	30					0	0	1	0	0
TBC1D5	9779	broad.mit.edu	37	3	17349598	17349598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:17349598C>T	uc003cbf.2	-	14	2689	c.1024G>A	c.(1024-1026)GAG>AAG	p.E342K	TBC1D5_uc010heu.2_5'UTR|TBC1D5_uc010hev.2_Missense_Mutation_p.E342K|TBC1D5_uc003cbe.2_Missense_Mutation_p.E342K|TBC1D5_uc010hew.1_Missense_Mutation_p.E294K	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	342	Rab-GAP TBC.					intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						AGGGGGAACTCTCGTCCAAAT	0.438													3	8					0	0	1	0	0
KCNH8	131096	broad.mit.edu	37	3	19295239	19295239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:19295239G>A	uc003cbk.1	+	2	365	c.170G>A	c.(169-171)CGA>CAA	p.R57Q	KCNH8_uc011awe.1_Missense_Mutation_p.R57Q|KCNH8_uc010hex.1_5'UTR	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	57	Cytoplasmic (Potential).|PAS.					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						GGATTTGCCCGAACTGAAGTC	0.458													4	29					0	0	1	0	0
SGOL1	151648	broad.mit.edu	37	3	20225193	20225193	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:20225193G>A	uc003cbs.2	-	3	433	c.246C>T	c.(244-246)ATC>ATT	p.I82I	SGOL1_uc003cbr.2_Silent_p.I82I|SGOL1_uc010hfa.2_Silent_p.I82I|SGOL1_uc003cbt.2_Silent_p.I82I|SGOL1_uc003cbu.2_Silent_p.I82I|SGOL1_uc003cbv.2_Silent_p.I82I|SGOL1_uc003cbw.2_Silent_p.I82I|SGOL1_uc003cbx.2_Silent_p.I82I|SGOL1_uc003cby.2_Silent_p.I82I|SGOL1_uc003cbz.2_Silent_p.I82I|SGOL1_uc003cca.2_Silent_p.I82I|SGOL1_uc003ccb.2_Silent_p.I82I|SGOL1_uc003ccc.2_Silent_p.I82I	NM_001012410	NP_001012410	Q5FBB7	SGOL1_HUMAN	shugoshin-like 1 isoform A2	82	Potential.|Necessary for interaction with PPP2CA and PPP2R1A.				attachment of spindle microtubules to kinetochore|cell division|centriole-centriole cohesion|meiotic chromosome segregation|mitotic prometaphase	centrosome|condensed chromosome kinetochore|cytosol|mitotic cohesin complex|spindle pole	protein binding				0						TCAGCTGTAGGATGATATCTT	0.343													10	54					0	0	1	0	0
OSBPL10	114884	broad.mit.edu	37	3	31725315	31725315	+	Missense_Mutation	SNP	C	T	T	rs140782910		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:31725315C>T	uc003cev.2	-	9	1918	c.1537G>A	c.(1537-1539)GAA>AAA	p.E513K	OSBPL10_uc003ceu.1_Missense_Mutation_p.E270K|OSBPL10_uc011axf.1_Missense_Mutation_p.E449K	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	513					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		ATTGGGTGTTCGTGACAGCTG	0.542													10	74					0	0	1	0	0
CMTM7	112616	broad.mit.edu	37	3	32490978	32490978	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:32490978C>T	uc003cey.1	+	3	602	c.366C>T	c.(364-366)CTC>CTT	p.L122L	CMTM7_uc003cez.1_Intron	NM_138410	NP_612419	Q96FZ5	CKLF7_HUMAN	CKLF-like MARVEL transmembrane domain containing	122	Helical; (Potential).|MARVEL.				chemotaxis	extracellular space|integral to membrane	cytokine activity				0						GTACCCTGCTCCTCCTCATCG	0.532													7	99					0	0	1	0	0
TRIM71	131405	broad.mit.edu	37	3	32915464	32915464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:32915464G>A	uc003cff.2	+	2	1070	c.1007G>A	c.(1006-1008)CGA>CAA	p.R336Q		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	336					multicellular organismal development	cytoplasm	zinc ion binding	p.R336fs*6(1)		ovary(2)|large_intestine(1)	3						CAGCAGGGACGACAGGCAATC	0.617													5	71					0	0	1	0	0
TRIM71	131405	broad.mit.edu	37	3	32932655	32932655	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:32932655C>T	uc003cff.2	+	4	2022	c.1959C>T	c.(1957-1959)TTC>TTT	p.F653F		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	653	NHL 2.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						CTGGGCAGTTCGACCGACCAG	0.632													10	22					0	0	1	0	0
CCR4	1233	broad.mit.edu	37	3	32995187	32995187	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:32995187C>T	uc003cfg.1	+	2	441	c.273C>T	c.(271-273)TCC>TCT	p.S91S		NM_005508	NP_005499	P51679	CCR4_HUMAN	chemokine (C-C motif) receptor 4	91	Helical; Name=2; (Potential).				chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response	integral to plasma membrane				lung(1)	1						TCGTGTTTTCCCTCCCTTTTT	0.507													7	97					0	0	1	0	0
CCR4	1233	broad.mit.edu	37	3	32995868	32995868	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:32995868C>T	uc003cfg.1	+	2	1122	c.954C>T	c.(952-954)CTC>CTT	p.L318L		NM_005508	NP_005499	P51679	CCR4_HUMAN	chemokine (C-C motif) receptor 4	318	Cytoplasmic (Potential).				chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response	integral to plasma membrane				lung(1)	1						TCCTACAGCTCTTCAAAACCT	0.493													5	61					0	0	1	0	0
ARPP21	10777	broad.mit.edu	37	3	35833970	35833970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:35833970G>A	uc003cgb.2	+	19	2393	c.2129G>A	c.(2128-2130)GGA>GAA	p.G710E	ARPP21_uc003cga.2_Missense_Mutation_p.G691E|ARPP21_uc011axy.1_Missense_Mutation_p.G711E|ARPP21_uc003cgf.2_Missense_Mutation_p.G546E|ARPP21_uc003cgg.2_Missense_Mutation_p.G233E	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	710	Gln-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						AACCAACAAGGAACTCCGGTG	0.463													6	19					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36779044	36779044	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:36779044G>A	uc003cgi.2	-	2	1598	c.1107C>T	c.(1105-1107)GTC>GTT	p.V369V		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	369	Protein kinase.|ATP (By similarity).					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						ACTCCTTCACGACAGCAAAGT	0.572													4	36					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36779221	36779221	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:36779221C>T	uc003cgi.2	-	2	1421	c.930G>A	c.(928-930)AGG>AGA	p.R310R		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	310						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TGAGAGTCATCCTTCTGCCTC	0.572													9	141					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36779345	36779345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:36779345C>T	uc003cgi.2	-	2	1297	c.806G>A	c.(805-807)AGG>AAG	p.R269K		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	269						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						ATGTTTGCTCCTGCTCATGGG	0.587													5	82					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36779589	36779589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:36779589C>T	uc003cgi.2	-	2	1053	c.562G>A	c.(562-564)GAG>AAG	p.E188K		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	188						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						GGATTTGCCTCGGGAGACCTC	0.582													6	72					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36779857	36779857	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:36779857C>T	uc003cgi.2	-	2	785	c.294G>A	c.(292-294)GGG>GGA	p.G98G		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	98						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						GCTCCCATTTCCCCCTCCCCC	0.577													18	139					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36779910	36779910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:36779910C>T	uc003cgi.2	-	2	732	c.241G>A	c.(241-243)GAG>AAG	p.E81K		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	81						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						GAAAGCTCCTCGGGGATCTTC	0.607													7	162					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36871143	36871143	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:36871143C>T	uc003cgj.2	-	13	7241	c.6939G>A	c.(6937-6939)GCG>GCA	p.A2313A		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2863					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GCCGAGTCATCGCCTCCTCCG	0.488													8	44					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36872569	36872569	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:36872569C>T	uc003cgj.2	-	12	7025	c.6723G>A	c.(6721-6723)CAG>CAA	p.Q2241Q		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2791					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTGAGTATTTCTGGTAGGCCA	0.532													21	143					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36873709	36873709	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:36873709G>A	uc003cgj.2	-	12	5885	c.5583C>T	c.(5581-5583)CTC>CTT	p.L1861L		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2411					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GGAACTCCAGGAGGGCTACTG	0.507													7	110					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36873791	36873791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:36873791C>T	uc003cgj.2	-	12	5803	c.5501G>A	c.(5500-5502)AGG>AAG	p.R1834K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2384					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GAAAAAGAGCCTCTTGTAGTC	0.463													8	95					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36898645	36898645	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:36898645C>T	uc003cgj.2	-	3	1088	c.786G>A	c.(784-786)AAG>AAA	p.K262K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	812					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TGATTTTCTTCTTGATGACCT	0.512													12	109					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36898910	36898910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:36898910C>T	uc003cgj.2	-	3	823	c.521G>A	c.(520-522)GGA>GAA	p.G174E		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	724					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						ATCTTTCTTTCCTTCTTTGCC	0.562													4	30					0	0	1	0	0
MLH1	4292	broad.mit.edu	37	3	37053562	37053562	+	Missense_Mutation	SNP	C	T	T	rs4986984	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:37053562C>T	uc003cgl.2	+	8	709	c.649C>T	c.(649-651)CGC>TGC	p.R217C	MLH1_uc011aye.1_5'UTR|MLH1_uc011ayb.1_5'UTR|MLH1_uc010hge.2_Missense_Mutation_p.R217C|MLH1_uc003cgn.3_5'UTR|MLH1_uc011ayc.1_Missense_Mutation_p.R119C|MLH1_uc011ayd.1_5'UTR|MLH1_uc003cgo.2_5'UTR|MLH1_uc010hgg.1_5'UTR|MLH1_uc010hgh.1_5'UTR|MLH1_uc010hgi.1_5'UTR|MLH1_uc010hgj.1_5'UTR|MLH1_uc010hgk.2_5'UTR|MLH1_uc010hgl.1_5'Flank	NM_000249	NP_000240	P40692	MLH1_HUMAN	MutL protein homolog 1	217			R -> G.		mismatch repair|somatic hypermutation of immunoglobulin genes	chiasma|MutLalpha complex|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|protein binding	p.0?(1)		large_intestine(40)|haematopoietic_and_lymphoid_tissue(8)|ovary(6)|pancreas(5)|stomach(3)|central_nervous_system(3)|endometrium(3)|breast(3)|prostate(3)|skin(2)|NS(1)	77						GGACAATATTCGCTCCATCTT	0.358		1	D|Mis|N|F|S		colorectal|endometrial|ovarian|CNS	colorectal|endometrial|ovarian|CNS		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				5	47					0	0	1	0	0
MLH1	4292	broad.mit.edu	37	3	37061859	37061859	+	Missense_Mutation	SNP	C	T	T	rs151119913		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:37061859C>T	uc003cgl.2	+	11	1003	c.943C>T	c.(943-945)CAC>TAC	p.H315Y	MLH1_uc011aye.1_Missense_Mutation_p.H74Y|MLH1_uc011ayb.1_Missense_Mutation_p.H74Y|MLH1_uc010hge.2_Missense_Mutation_p.H315Y|MLH1_uc003cgn.3_Missense_Mutation_p.H74Y|MLH1_uc011ayc.1_Missense_Mutation_p.H217Y|MLH1_uc011ayd.1_Missense_Mutation_p.H74Y|MLH1_uc003cgo.2_Missense_Mutation_p.H74Y|MLH1_uc010hgg.1_5'UTR|MLH1_uc010hgh.1_5'UTR|MLH1_uc010hgi.1_Intron|MLH1_uc010hgj.1_Intron|MLH1_uc010hgk.2_Intron|MLH1_uc010hgl.1_Silent_p.F13F	NM_000249	NP_000240	P40692	MLH1_HUMAN	MutL protein homolog 1	315					mismatch repair|somatic hypermutation of immunoglobulin genes	chiasma|MutLalpha complex|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|protein binding	p.0?(1)		large_intestine(40)|haematopoietic_and_lymphoid_tissue(8)|ovary(6)|pancreas(5)|stomach(3)|central_nervous_system(3)|endometrium(3)|breast(3)|prostate(3)|skin(2)|NS(1)	77						GCATGAAGTTCACTTCCTGCA	0.498		1	D|Mis|N|F|S		colorectal|endometrial|ovarian|CNS	colorectal|endometrial|ovarian|CNS		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				5	43					0	0	1	0	0
ITGA9	3680	broad.mit.edu	37	3	37514927	37514927	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:37514927G>A	uc003chd.2	+	3	449	c.396G>A	c.(394-396)CAG>CAA	p.Q132Q	ITGA9_uc003chc.2_Silent_p.Q132Q	NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	132	Extracellular (Potential).|FG-GAP 2.				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		TGGCCCGACAGCCCAAGGCTG	0.562													5	37					0	0	1	0	0
ITGA9	3680	broad.mit.edu	37	3	37555367	37555367	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:37555367C>T	uc003chd.2	+	9	1064	c.1011C>T	c.(1009-1011)GTC>GTT	p.V337V	ITGA9_uc003chc.2_Silent_p.V337V	NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	337	Extracellular (Potential).|FG-GAP 5.				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		AGGGACAGGTCACTGTCTACA	0.582													7	80					0	0	1	0	0
PLCD1	5333	broad.mit.edu	37	3	38051693	38051693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:38051693G>A	uc003chn.2	-	7	1190	c.1066C>T	c.(1066-1068)CAC>TAC	p.H356Y	PLCD1_uc003chm.2_Missense_Mutation_p.H377Y	NM_006225	NP_006216	P51178	PLCD1_HUMAN	phospholipase C, delta 1 isoform 2	356	PI-PLC X-box.	By similarity.			intracellular signal transduction|lipid catabolic process|phospholipid metabolic process	cytoplasm	calcium ion binding|GTPase activating protein binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0519)|Kidney(284;0.0653)		GTATAGCCGTGGTAGATGATT	0.607													9	72					0	0	1	0	0
SLC22A14	9389	broad.mit.edu	37	3	38355319	38355319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:38355319C>T	uc010hhc.1	+	8	1307	c.1265C>T	c.(1264-1266)CCT>CTT	p.P422L	SLC22A14_uc003cib.2_Missense_Mutation_p.P422L|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	422	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		ATGGAGGTGCCTGCCCGGCTG	0.552													10	108					0	0	1	0	0
XYLB	9942	broad.mit.edu	37	3	38442461	38442461	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:38442461C>T	uc003cic.2	+	18	1627	c.1518C>T	c.(1516-1518)AGC>AGT	p.S506S	XYLB_uc011ayp.1_Silent_p.S369S|XYLB_uc003cid.1_Silent_p.S428S	NM_005108	NP_005099	O75191	XYLB_HUMAN	xylulokinase	506					D-xylose metabolic process|generation of precursor metabolites and energy|xylulose catabolic process		ATP binding|xylulokinase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.00372)|Kidney(284;0.00405)		CTACCCCAAGCCCGGGAGCTT	0.493													5	65					0	0	1	0	0
ACVR2B	93	broad.mit.edu	37	3	38523742	38523742	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:38523742C>T	uc003cif.2	+	9	1152	c.1128C>T	c.(1126-1128)TTC>TTT	p.F376F	ACVR2B_uc003cig.2_Silent_p.F167F	NM_001106	NP_001097	Q13705	AVR2B_HUMAN	activin A receptor, type IIB precursor	376	Cytoplasmic (Potential).|Protein kinase.				activin receptor signaling pathway|anterior/posterior pattern formation|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|regulation of transcription, DNA-dependent	cell surface|cytoplasm|integral to plasma membrane	activin receptor activity|ATP binding|growth factor binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			lung(1)	1	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0565)|Kidney(284;0.071)		CCATCAACTTCCAGAGAGATG	0.557													3	24					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38592515	38592515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:38592515G>A	uc003cio.2	-	28	5542	c.5348C>T	c.(5347-5349)ACC>ATC	p.T1783I	SCN5A_uc003cin.2_Missense_Mutation_p.T1782I|SCN5A_uc003cil.3_Missense_Mutation_p.T1783I|SCN5A_uc010hhi.2_Missense_Mutation_p.T1765I|SCN5A_uc010hhk.2_Missense_Mutation_p.T1750I|SCN5A_uc011ayr.1_Missense_Mutation_p.T1729I	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1783					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CAGGGGCTCGGTGCTCTCCTC	0.502													4	55					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38738878	38738878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:38738878C>T	uc003ciq.2	-	27	5833	c.5833G>A	c.(5833-5835)GAA>AAA	p.E1945K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1945					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CTGGTGGCTTCATCTTCATTT	0.478													5	56					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38738884	38738884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:38738884C>T	uc003ciq.2	-	27	5827	c.5827G>A	c.(5827-5829)GAA>AAA	p.E1943K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1943					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCTTCATCTTCATTTTGTATT	0.478													5	55					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38755509	38755509	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:38755509G>A	uc003ciq.2	-	21	3744	c.3744C>T	c.(3742-3744)GCC>GCT	p.A1248A		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1248	III.|Helical; Voltage-sensor; Name=S4 of repeat III; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GGGTTCGAAGGGCTTTGATGG	0.473													8	46					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38783842	38783842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:38783842C>T	uc003ciq.2	-	13	2046	c.2046G>A	c.(2044-2046)ATG>ATA	p.M682I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	682	Helical; Name=S1 of repeat II; (Potential).|II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCTCCATGGCCATGAAGATGG	0.552													8	55					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38798221	38798221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:38798221C>T	uc003ciq.2	-	9	1234	c.1234G>A	c.(1234-1236)GAA>AAA	p.E412K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	412					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TCCTTTGCTTCAATTTCATCA	0.507													7	76					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38888565	38888565	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:38888565G>A	uc011ays.1	-	26	5195	c.4996C>T	c.(4996-4998)CAA>TAA	p.Q1666*		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1666					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ACTAGAAATTGATATTTATTT	0.463													4	16					0	0	1	0	0
TTC21A	199223	broad.mit.edu	37	3	39162599	39162599	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:39162599C>T	uc003cjc.2	+	9	1213	c.1036C>T	c.(1036-1038)CTG>TTG	p.L346L	TTC21A_uc003cje.2_Silent_p.L346L|TTC21A_uc003cjd.2_RNA|TTC21A_uc011ayx.1_Silent_p.L297L	NM_145755	NP_665698	Q8NDW8	TT21A_HUMAN	tetratricopeptide repeat domain 21A isoform 2	346	TPR 6.						binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		TCTCTTCATCCTGAAGAACCA	0.517													5	47					0	0	1	0	0
TTC21A	199223	broad.mit.edu	37	3	39169877	39169877	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:39169877C>T	uc003cjc.2	+	13	1776	c.1599C>T	c.(1597-1599)GCC>GCT	p.A533A	TTC21A_uc003cje.2_Silent_p.A534A|TTC21A_uc003cjd.2_RNA|TTC21A_uc011ayx.1_Silent_p.A485A	NM_145755	NP_665698	Q8NDW8	TT21A_HUMAN	tetratricopeptide repeat domain 21A isoform 2	533	TPR 7.						binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		TGGACCCCGCCTCCGTGGATG	0.547													4	49					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39228484	39228484	+	Missense_Mutation	SNP	C	T	T	rs145488377	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:39228484C>T	uc003cjk.1	-	2	2674	c.2453G>A	c.(2452-2454)CGA>CAA	p.R818Q	XIRP1_uc003cji.2_Missense_Mutation_p.R818Q|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	818							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CTCCTCCTTTCGTATATAAGG	0.617													14	70					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39229360	39229360	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:39229360C>T	uc003cjk.1	-	2	1798	c.1577G>A	c.(1576-1578)CGA>CAA	p.R526Q	XIRP1_uc003cji.2_Missense_Mutation_p.R526Q|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	526							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		ACTGGGGCTTCGGCCGAGCTG	0.617													6	88					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39229746	39229746	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:39229746G>A	uc003cjk.1	-	2	1412	c.1191C>T	c.(1189-1191)GTC>GTT	p.V397V	XIRP1_uc003cji.2_Silent_p.V397V|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	397							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GACCCACTTGGACCTTGTCTC	0.592													19	159					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39229874	39229874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:39229874C>T	uc003cjk.1	-	2	1284	c.1063G>A	c.(1063-1065)GAC>AAC	p.D355N	XIRP1_uc003cji.2_Missense_Mutation_p.D355N|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	355	Xin 8.						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		TTCAGAGTGTCCAGCGCTCGG	0.567													7	124					0	0	1	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307657	39307657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:39307657C>T	uc003cjl.2	-	2	436	c.344G>A	c.(343-345)GGA>GAA	p.G115E		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	115	Helical; Name=3; (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		GAATATGCTTCCAAAAAAGCC	0.502													5	72					0	0	1	0	0
SLC25A38	54977	broad.mit.edu	37	3	39435916	39435916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:39435916C>T	uc003cjo.2	+	6	1042	c.641C>T	c.(640-642)ACC>ATC	p.T214I		NM_017875	NP_060345	Q96DW6	S2538_HUMAN	solute carrier family 25, member 38	214	Helical; Name=5; (Potential).				erythrocyte differentiation|heme biosynthetic process|transport	integral to membrane|mitochondrial inner membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		GTGGATGCAACCCTTATTCCT	0.408													17	123					0	0	1	0	0
ULK4	54986	broad.mit.edu	37	3	41705177	41705177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:41705177G>A	uc003ckv.3	-	30	3193	c.2992C>T	c.(2992-2994)CTT>TTT	p.L998F		NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	998							ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		GGTTCTAAAAGAATGTGCTCA	0.269													5	21					0	0	1	0	0
TRAK1	22906	broad.mit.edu	37	3	42244161	42244161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:42244161C>T	uc003cky.2	+	13	1877	c.1661C>T	c.(1660-1662)TCC>TTC	p.S554F	TRAK1_uc011azh.1_Missense_Mutation_p.S554F|TRAK1_uc011azi.1_Missense_Mutation_p.S554F|TRAK1_uc003ckz.3_Missense_Mutation_p.S480F|TRAK1_uc011azj.1_Missense_Mutation_p.S480F|TRAK1_uc003cla.2_Missense_Mutation_p.S496F	NM_001042646	NP_001036111	Q9UPV9	TRAK1_HUMAN	OGT(O-Glc-NAc transferase)-interacting protein	554					endosome to lysosome transport|protein O-linked glycosylation|protein targeting|regulation of transcription from RNA polymerase II promoter	early endosome|mitochondrion|nucleus				ovary(1)	1						TCCCGCTTCTCCGAGTTCACC	0.642													8	62					0	0	1	0	0
LYZL4	131375	broad.mit.edu	37	3	42448644	42448644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:42448644C>T	uc003cle.2	-	2	349	c.100G>A	c.(100-102)GGA>AGA	p.G34R		NM_144634	NP_653235	Q96KX0	LYZL4_HUMAN	lysozyme-like 4 precursor	34					cell wall macromolecule catabolic process	extracellular region	lysozyme activity			central_nervous_system(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.222)		TCCAGGCCTCCATCGTGGAGT	0.547													6	42					0	0	1	0	0
KBTBD5	131377	broad.mit.edu	37	3	42727348	42727348	+	Missense_Mutation	SNP	G	A	A	rs144461124	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:42727348G>A	uc003clv.1	+	1	338	c.238G>A	c.(238-240)GAC>AAC	p.D80N		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	80	BTB.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		GGTGTCCCCGGACGTGGTGGC	0.677													6	37					0	0	1	0	0
KBTBD5	131377	broad.mit.edu	37	3	42729662	42729662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:42729662G>A	uc003clv.1	+	2	1281	c.1181G>A	c.(1180-1182)GGG>GAG	p.G394E		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	394	Kelch 1.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		GAGTGGCTGGGGATGCCACCG	0.657													8	58					0	0	1	0	0
CCDC13	152206	broad.mit.edu	37	3	42750534	42750534	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:42750534G>A	uc003cly.3	-	16	2170	c.2086C>T	c.(2086-2088)CTG>TTG	p.L696L		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	696										ovary(1)	1						ACCTGGCCCAGGATCTCATGG	0.617													4	56					0	0	1	0	0
CCDC13	152206	broad.mit.edu	37	3	42750540	42750540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:42750540C>T	uc003cly.3	-	16	2164	c.2080G>A	c.(2080-2082)GAG>AAG	p.E694K		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	694										ovary(1)	1						CCCAGGATCTCATGGTACATC	0.612													5	54					0	0	1	0	0
CCDC13	152206	broad.mit.edu	37	3	42784408	42784408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:42784408C>T	uc003cly.3	-	8	1051	c.967G>A	c.(967-969)GAA>AAA	p.E323K		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	323	Potential.									ovary(1)	1						TCCTGTTTTTCCCTTTCCAGG	0.562													9	136					0	0	1	0	0
CCDC13	152206	broad.mit.edu	37	3	42798663	42798663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:42798663C>T	uc003cly.3	-	3	349	c.265G>A	c.(265-267)GAA>AAA	p.E89K	CCDC13_uc003clz.2_Missense_Mutation_p.E89K|CCDC13_uc011azq.1_Missense_Mutation_p.E89K	NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	89	Potential.									ovary(1)	1						TCCACCGTTTCCCTGAGCTCA	0.473													6	112					0	0	1	0	0
CCBP2	1238	broad.mit.edu	37	3	42906917	42906917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:42906917C>T	uc003cme.2	+	3	1102	c.923C>T	c.(922-924)TCC>TTC	p.S308F	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmf.2_Missense_Mutation_p.S308F|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Intron	NM_001296	NP_001287	O00590	CCBP2_HUMAN	chemokine binding protein 2	308	Helical; Name=7; (Potential).				chemotaxis|immune response|multicellular organismal development	integral to plasma membrane	C-X-C chemokine receptor activity			lung(4)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.241)		TGCTGCTTTTCCCCCATCCTG	0.577													6	108					0	0	1	0	0
CYP8B1	1582	broad.mit.edu	37	3	42916031	42916031	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:42916031G>A	uc003cmh.2	-	1	1603	c.1278C>T	c.(1276-1278)ATC>ATT	p.I426I	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Silent_p.I426I	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	426					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		TGTAGTGGTGGATCTTCTTGC	0.542													7	103					0	0	1	0	0
ZNF662	389114	broad.mit.edu	37	3	42956672	42956672	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:42956672C>T	uc003cmi.2	+	5	1459	c.1107C>T	c.(1105-1107)TTC>TTT	p.F369F	ZNF662_uc003cmk.2_Silent_p.F395F|ZNF662_uc003cmj.2_Silent_p.F261F	NM_207404	NP_997287	Q6ZS27	ZN662_HUMAN	zinc finger protein 662 isoform 1	369	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.217)		GGAAAAGCTTCTTTTGCAAGG	0.463													3	23					0	0	1	0	0
SNRK	54861	broad.mit.edu	37	3	43388920	43388920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:43388920C>T	uc003cms.3	+	7	1501	c.1169C>T	c.(1168-1170)TCT>TTT	p.S390F	SNRK_uc003cmt.3_Missense_Mutation_p.S390F|SNRK_uc010hik.2_Missense_Mutation_p.S390F|SNRK_uc011azr.1_Missense_Mutation_p.S184F	NM_017719	NP_060189	Q9NRH2	SNRK_HUMAN	SNF related kinase	390					myeloid cell differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.0636)|Kidney(284;0.0792)		GTCCCTCAGTCTCCTGCTCGG	0.557													6	62					0	0	1	0	0
C3orf23	285343	broad.mit.edu	37	3	44408953	44408953	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:44408953C>T	uc010him.2	+	5	570	c.325C>T	c.(325-327)CGA>TGA	p.R109*	C3orf23_uc003cnd.3_Nonsense_Mutation_p.R109*|C3orf23_uc003cne.3_Intron	NM_173826	NP_776187	Q8N3R3	CC023_HUMAN	hypothetical protein LOC285343 isoform 1	109						mitochondrion				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(197;0.0468)|Kidney(197;0.0585)		TCTAGGATTTCGAGCAGTCAA	0.303													5	28					0	0	1	0	0
ZNF660	285349	broad.mit.edu	37	3	44636230	44636230	+	Missense_Mutation	SNP	G	A	A	rs143217347		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:44636230G>A	uc003cnl.1	+	3	878	c.545G>A	c.(544-546)CGA>CAA	p.R182Q		NM_173658	NP_775929	Q6AZW8	ZN660_HUMAN	zinc finger protein 660	182	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(197;0.0468)|Kidney(197;0.0585)		CAACATCAGCGAATGCACAGA	0.408													11	87					0	0	1	0	0
TGM4	7047	broad.mit.edu	37	3	44945471	44945471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:44945471G>A	uc003coc.3	+	9	1140	c.1067G>A	c.(1066-1068)CGA>CAA	p.R356Q		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	356					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	CCGCAGGAGCGAAGCCAGGGT	0.627													7	69					0	0	1	0	0
TGM4	7047	broad.mit.edu	37	3	44955175	44955175	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:44955175G>A	uc003coc.3	+	14	2086	c.2013G>A	c.(2011-2013)GTG>GTA	p.V671V		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	671					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	CCAAACAAGTGAAAGAGATTA	0.423											OREG0015520	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	60					0	0	1	0	0
EXOSC7	23016	broad.mit.edu	37	3	45038639	45038639	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:45038639C>T	uc003coi.2	+	4	344	c.315C>T	c.(313-315)ATC>ATT	p.I105I	EXOSC7_uc003coh.1_Silent_p.I40I|EXOSC7_uc011bae.1_Silent_p.I105I|EXOSC7_uc010his.1_Silent_p.I24I|EXOSC7_uc003coj.2_Silent_p.I105I	NM_015004	NP_055819	Q15024	EXOS7_HUMAN	exosome component 7	105					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus	3'-5'-exoribonuclease activity|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00911)|KIRC - Kidney renal clear cell carcinoma(197;0.0509)|Kidney(197;0.064)		GCACCGAGATCGCTAACACCC	0.458													5	106					0	0	1	0	0
LZTFL1	54585	broad.mit.edu	37	3	45874579	45874579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:45874579G>A	uc003cox.1	-	5	557	c.419C>T	c.(418-420)CCA>CTA	p.P140L	LZTFL1_uc003coy.1_Missense_Mutation_p.P123L|LZTFL1_uc011bak.1_RNA	NM_020347	NP_065080	Q9NQ48	LZTL1_HUMAN	leucine zipper transcription factor-like 1	140	Potential.										0				BRCA - Breast invasive adenocarcinoma(193;0.00867)|KIRC - Kidney renal clear cell carcinoma(197;0.0177)|Kidney(197;0.0208)		TTCATTAAGTGGAGCAAGTTT	0.373													4	72					0	0	1	0	0
CXCR6	10663	broad.mit.edu	37	3	45988292	45988292	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:45988292G>A	uc003cpc.1	+	2	400	c.319G>A	c.(319-321)GGC>AGC	p.G107S	FYCO1_uc003cpb.3_Intron|FYCO1_uc011bal.1_Intron|CXCR6_uc010hix.1_Missense_Mutation_p.G107S	NM_006564	NP_006555	O00574	CXCR6_HUMAN	G protein-coupled receptor TYMSTR	107	Helical; Name=3; (Potential).				viral genome replication	integral to plasma membrane	coreceptor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		GAGCCTACTGGGCATCTACAC	0.522													24	170					0	0	1	0	0
XCR1	2829	broad.mit.edu	37	3	46062607	46062607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:46062607G>A	uc003cpe.2	-	3	1057	c.833C>T	c.(832-834)TCC>TTC	p.S278F	uc003cpd.1_5'Flank|XCR1_uc003cpf.2_Missense_Mutation_p.S278F	NM_005283	NP_005274	P46094	XCR1_HUMAN	XC chemokine receptor 1	278	Helical; Name=7; (Potential).				chemotaxis|G-protein signaling, coupled to cyclic nucleotide second messenger|inflammatory response	integral to plasma membrane	chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		GCAGCAGTGGGAGAAGGCGAG	0.577													5	25					0	0	1	0	0
CCR2	729230	broad.mit.edu	37	3	46399702	46399702	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:46399702C>T	uc003cpn.3	+	2	1169	c.684C>T	c.(682-684)ACC>ACT	p.T228T	CCR2_uc003cpm.3_Silent_p.T228T	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	228	Cytoplasmic (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		TCCTGAAAACCCTGCTTCGGT	0.463													24	181					0	0	1	0	0
CCR5	1234	broad.mit.edu	37	3	46415432	46415432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:46415432G>A	uc003cpo.3	+	3	1161	c.1039G>A	c.(1039-1041)GAA>AAA	p.E347K	CCR5_uc010hjd.2_Missense_Mutation_p.E347K	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	347	Cytoplasmic (Potential).				cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	TGGGGAGCAGGAAATATCTGT	0.532													5	34					0	0	1	0	0
LTF	4057	broad.mit.edu	37	3	46485071	46485071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:46485071C>T	uc003cpq.2	-	13	1554	c.1516G>A	c.(1516-1518)GAA>AAA	p.E506K	LTF_uc003fzr.2_Missense_Mutation_p.E462K|LTF_uc010hjh.2_Missense_Mutation_p.E504K|LTF_uc003cpr.2_Missense_Mutation_p.E493K	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	506	Transferrin-like 2.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	CTGAAATATTCATCTGGAGAG	0.502													11	142					0	0	1	0	0
ALS2CL	259173	broad.mit.edu	37	3	46722884	46722884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:46722884C>T	uc003cqa.1	-	13	1478	c.1288G>A	c.(1288-1290)GAG>AAG	p.E430K	ALS2CL_uc003cpz.1_5'UTR|ALS2CL_uc003cqb.1_Missense_Mutation_p.E430K|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	430	MORN 3.			E -> G (in Ref. 2; BAD18448).	endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		TTGTACACCTCGTCGGTGCTG	0.652													5	94					0	0	1	0	0
TMIE	259236	broad.mit.edu	37	3	46747307	46747307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:46747307C>T	uc010hjk.1	+	2	276	c.121C>T	c.(121-123)CCG>TCG	p.P41S	TMIE_uc010hjj.1_Missense_Mutation_p.A80V	NM_147196	NP_671729	Q8NEW7	TMIE_HUMAN	transmembrane inner ear protein precursor	41	Extracellular (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(193;0.000688)|KIRC - Kidney renal clear cell carcinoma(197;0.0177)|Kidney(197;0.0208)		CAAGCCCAAGCCGCCTCCGCT	0.622											OREG0015540	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	80					0	0	1	0	0
PRSS45	377047	broad.mit.edu	37	3	46786217	46786217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:46786217C>T	uc010hjl.2	-	1	29	c.29G>A	c.(28-30)AGC>AAC	p.S10N	PRSS45_uc011bam.1_RNA	NM_199183	NP_954652	Q7RTY3	PRS45_HUMAN	testis serine protease 5	10	Peptidase S1.				proteolysis		serine-type endopeptidase activity				0						CATCCGGAGGCTCACCTCCCA	0.597													4	28					0	0	1	0	0
PTH1R	5745	broad.mit.edu	37	3	46937283	46937283	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:46937283G>A	uc003cqm.2	+	5	440	c.237G>A	c.(235-237)AGG>AGA	p.R79R	PTH1R_uc003cqn.2_Silent_p.R79R	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	79	Extracellular (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						GGAAGCCCAGGAAAGATAAGG	0.547									Ollier_disease_/_Maffuci_syndrome		OREG0015543	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	35					0	0	1	0	0
NBEAL2	23218	broad.mit.edu	37	3	47043209	47043209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:47043209C>T	uc003cqp.2	+	30	4854	c.4675C>T	c.(4675-4677)CGC>TGC	p.R1559C	NBEAL2_uc010hjm.1_Missense_Mutation_p.R936C|NBEAL2_uc010hjn.1_5'Flank	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	1559							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		CCTACTTGATCGCCTGGGAGC	0.572													11	65					0	0	1	0	0
NBEAL2	23218	broad.mit.edu	37	3	47044494	47044494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:47044494C>T	uc003cqp.2	+	34	5686	c.5507C>T	c.(5506-5508)TCA>TTA	p.S1836L	NBEAL2_uc010hjm.1_Missense_Mutation_p.S1213L|NBEAL2_uc010hjn.1_Missense_Mutation_p.S232L|NBEAL2_uc010hjo.1_5'Flank	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	1836							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		GAGACATATTCACGCATGCGT	0.597													4	22					0	0	1	0	0
NBEAL2	23218	broad.mit.edu	37	3	47050061	47050062	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:47050061_47050062CT>TC	uc003cqp.2	+	52	8109_8110	c.7930_7931CT>TC	c.(7930-7932)CTG>TCG	p.L2644S	NRADDP_uc011bas.1_5'Flank|NBEAL2_uc010hjm.1_Missense_Mutation_p.L2021S|NBEAL2_uc010hjn.1_Missense_Mutation_p.L1010S|NBEAL2_uc010hjo.1_Missense_Mutation_p.L204S	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	2644							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		GCGGGCTTCACTGCCCCTGGCA	0.584													9	75					0	0	1	0	0
CSPG5	10675	broad.mit.edu	37	3	47604163	47604163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:47604163G>A	uc003crp.3	-	5	1804	c.1628C>T	c.(1627-1629)TCG>TTG	p.S543L	CSPG5_uc003crm.2_RNA|CSPG5_uc003crn.2_Missense_Mutation_p.S378L|CSPG5_uc003cro.3_Missense_Mutation_p.S516L|CSPG5_uc011bbb.1_Missense_Mutation_p.S405L	NM_006574	NP_006565	O95196	CSPG5_HUMAN	chondroitin sulfate proteoglycan 5 (neuroglycan	543	Cytoplasmic (Potential).				cell differentiation|intracellular transport|nervous system development|regulation of growth	endoplasmic reticulum membrane|Golgi-associated vesicle membrane|integral to plasma membrane|membrane fraction	growth factor activity			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000266)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		AAGTTTGGGCGACATGGAGTT	0.493													9	124					0	0	1	0	0
FBXW12	285231	broad.mit.edu	37	3	48414338	48414338	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:48414338G>A	uc003csr.2	+	2	267	c.81G>A	c.(79-81)CAG>CAA	p.Q27Q	FBXW12_uc010hjv.2_Intron|FBXW12_uc003css.2_Silent_p.Q27Q|FBXW12_uc010hjw.2_Intron	NM_207102	NP_996985	Q6X9E4	FBW12_HUMAN	F-box and WD repeat domain containing 12 isoform	27	F-box.										0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AGGTTTCCCAGGTGAACAAGG	0.542													14	75					0	0	1	0	0
PLXNB1	5364	broad.mit.edu	37	3	48454340	48454340	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:48454340G>A	uc003csw.2	-	25	4935	c.4665C>T	c.(4663-4665)ACC>ACT	p.T1555T	PLXNB1_uc003cst.2_Silent_p.T5T|PLXNB1_uc003csu.2_Silent_p.T1372T|PLXNB1_uc003csx.2_Silent_p.T1555T	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	1555	Cytoplasmic (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GGAGGTCACTGGTGAGATCGG	0.582													5	66					0	0	1	0	0
CCDC51	79714	broad.mit.edu	37	3	48474285	48474285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:48474285G>A	uc003csz.2	-	4	890	c.769C>T	c.(769-771)CGC>TGC	p.R257C	PLXNB1_uc003csx.2_5'Flank|CCDC51_uc003cta.2_Missense_Mutation_p.R148C|CCDC51_uc003ctb.2_Missense_Mutation_p.R148C|CCDC51_uc003ctc.2_Missense_Mutation_p.R257C|CCDC51_uc003ctd.2_Missense_Mutation_p.R148C	NM_024661	NP_078937	Q96ER9	CCD51_HUMAN	coiled-coil domain containing 51	257						integral to membrane					0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CTCTGCTGGCGGGAGTAGCTA	0.617													6	89					0	0	1	0	0
PFKFB4	5210	broad.mit.edu	37	3	48563046	48563046	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:48563046G>A	uc003ctv.2	-	10	1061	c.1044C>T	c.(1042-1044)TTC>TTT	p.F348F	PFKFB4_uc003ctw.2_Silent_p.F157F|PFKFB4_uc010hkc.2_Intron|PFKFB4_uc003ctx.2_Silent_p.F305F|PFKFB4_uc010hkb.2_Silent_p.F341F|PFKFB4_uc011bbm.1_Silent_p.F337F|PFKFB4_uc011bbn.1_RNA	NM_004567	NP_004558	Q16877	F264_HUMAN	6-phosphofructo-2-kinase/fructose-2,	348	Fructose-2,6-bisphosphatase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0003)|KIRC - Kidney renal clear cell carcinoma(197;0.00596)|Kidney(197;0.00684)		CCCGCAGGGCGAACTCCAGTG	0.562													4	38					0	0	1	0	0
PFKFB4	5210	broad.mit.edu	37	3	48573793	48573793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:48573793G>A	uc003ctv.2	-	8	753	c.736C>T	c.(736-738)CAC>TAC	p.H246Y	PFKFB4_uc003ctw.2_Missense_Mutation_p.H55Y|PFKFB4_uc010hkc.2_Missense_Mutation_p.H246Y|PFKFB4_uc003ctx.2_Missense_Mutation_p.H203Y|PFKFB4_uc010hkb.2_Missense_Mutation_p.H246Y|PFKFB4_uc011bbm.1_Missense_Mutation_p.H235Y|PFKFB4_uc011bbn.1_RNA	NM_004567	NP_004558	Q16877	F264_HUMAN	6-phosphofructo-2-kinase/fructose-2,	246	6-phosphofructo-2-kinase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0003)|KIRC - Kidney renal clear cell carcinoma(197;0.00596)|Kidney(197;0.00684)		GGGGTCACGTGGATGTTCATG	0.607													12	142					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48605530	48605530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:48605530C>T	uc003ctz.2	-	105	7869	c.7868G>A	c.(7867-7869)GGC>GAC	p.G2623D		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2623	Triple-helical region.		G -> C (in PR-DEB; dominant).		cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TACCTTGAGGCCCCGGGGACC	0.537													15	56					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48605947	48605947	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:48605947C>T	uc003ctz.2	-	104	7780	c.7779G>A	c.(7777-7779)GGG>GGA	p.G2593G		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2593	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CACCAGGGATCCCTGCTGCAC	0.637													4	30					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48619044	48619044	+	Missense_Mutation	SNP	G	A	A	rs146418495		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:48619044G>A	uc003ctz.2	-	49	4745	c.4744C>T	c.(4744-4746)CCT>TCT	p.P1582S	MIR711_hsa-mir-711|MI0012488_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1582	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGGTCTCCAGGAAGAACCAAG	0.567													10	56					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48619947	48619947	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:48619947C>T	uc003ctz.2	-	45	4565	c.4564_splice	c.e45-1	p.G1522_splice		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor						cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CTGGTGGCCCCTGAATGTAGA	0.602													15	77					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48697457	48697457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:48697457G>A	uc003cul.2	-	1	2892	c.2611C>T	c.(2611-2613)CGG>TGG	p.R871W	CELSR3_uc003cuf.1_Missense_Mutation_p.R941W	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	871	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		cccattggccgatcttcattc	0.353													6	66					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48698361	48698361	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:48698361G>A	uc003cul.2	-	1	1988	c.1707C>T	c.(1705-1707)GCC>GCT	p.A569A	CELSR3_uc003cuf.1_Silent_p.A639A	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	569	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CCCGGTCAGTGGCCGTGACGC	0.602													4	21					0	0	1	0	0
DALRD3	55152	broad.mit.edu	37	3	49055203	49055203	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:49055203G>A	uc003cvk.1	-	3	581	c.561C>T	c.(559-561)TCC>TCT	p.S187S	DALRD3_uc003cvl.1_Silent_p.S187S|DALRD3_uc003cvm.1_Silent_p.S20S|DALRD3_uc010hko.1_Silent_p.S20S|DALRD3_uc011bca.1_Silent_p.S187S|NDUFAF3_uc003cvn.2_5'Flank	NM_001009996	NP_001009996	Q5D0E6	DALD3_HUMAN	DALR anticodon binding domain containing 3	187					arginyl-tRNA aminoacylation	cytoplasm	arginine-tRNA ligase activity|ATP binding				0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		GGGTGTGGGAGGAAGCTCTCT	0.627													4	28					0	0	1	0	0
QARS	5859	broad.mit.edu	37	3	49140834	49140834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:49140834G>A	uc003cvx.2	-	5	465	c.460C>T	c.(460-462)CGG>TGG	p.R154W	QARS_uc011bcd.1_Missense_Mutation_p.R9W|QARS_uc003cvy.2_Missense_Mutation_p.R9W|QARS_uc011bce.1_Missense_Mutation_p.R143W|QARS_uc011bcf.1_Missense_Mutation_p.R154W	NM_005051	NP_005042	P47897	SYQ_HUMAN	glutaminyl-tRNA synthetase	154					glutaminyl-tRNA aminoacylation	cytosol|mitochondrial matrix	ATP binding|glutamine-tRNA ligase activity|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)	L-Glutamine(DB00130)	AGCACAGCCCGAGCCTCTCCT	0.522													7	83					0	0	1	0	0
LAMB2	3913	broad.mit.edu	37	3	49162535	49162535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:49162535G>A	uc003cwe.2	-	20	3087	c.2788C>T	c.(2788-2790)CCT>TCT	p.P930S	LAMB2_uc003cwf.1_Missense_Mutation_p.P930S	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	930	Laminin EGF-like 9.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GGGCCTTCAGGACAGGGACAG	0.597													4	40					0	0	1	0	0
GPX1	2876	broad.mit.edu	37	3	49394988	49394988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:49394988G>A	uc011bcl.1	-	3	525	c.445C>T	c.(445-447)CTC>TTC	p.L149F	GPX1_uc011bcm.1_3'UTR	NM_000581	NP_000572	P07203	GPX1_HUMAN	glutathione peroxidase 1 isoform 1	149					anti-apoptosis|cell redox homeostasis|glutathione metabolic process|heart contraction|hydrogen peroxide catabolic process|negative regulation of caspase activity|purine base metabolic process|purine nucleotide catabolic process|regulation of gene expression, epigenetic|regulation of mammary gland epithelial cell proliferation|regulation of proteasomal protein catabolic process|release of cytochrome c from mitochondria|response to selenium ion|UV protection	cytosol|mitochondrion	endopeptidase inhibitor activity|glutathione peroxidase activity|SH3 domain binding			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Glutathione(DB00143)	CAGGTGATGAGCTTGGGGTCG	0.662													4	52					0	0	1	0	0
DAG1	1605	broad.mit.edu	37	3	49568970	49568970	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:49568970C>T	uc003cxc.3	+	3	1444	c.1026C>T	c.(1024-1026)CCC>CCT	p.P342P		NM_004393	NP_004384	Q14118	DAG1_HUMAN	dystroglycan 1 preproprotein	342	Thr-rich.|Required for laminin recognition.|Mucin-like domain.				cytoskeletal anchoring at plasma membrane|interspecies interaction between organisms|microtubule anchoring|negative regulation of cell migration|negative regulation of MAPKKK cascade|negative regulation of protein kinase B signaling cascade	basement membrane|contractile ring|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|extracellular space|filopodium|integral to membrane|integral to membrane of membrane fraction|lamellipodium|nucleoplasm	actin binding|alpha-actinin binding|calcium ion binding|laminin-1 binding|receptor activity|structural constituent of muscle|tubulin binding|vinculin binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;5.13e-05)|Kidney(197;0.00241)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		TGCCAACCCCCACATCTCCAG	0.627													8	88					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49688996	49688996	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:49688996C>T	uc003cxe.3	+	5	2121	c.2007C>T	c.(2005-2007)TAC>TAT	p.Y669Y		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	669					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GCAAGCCTTACTCTCAGGATG	0.582													6	63					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49689456	49689456	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:49689456C>T	uc003cxe.3	+	5	2581	c.2467C>T	c.(2467-2469)CTG>TTG	p.L823L		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	823					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TGAGGGTGGCCTGTCCCCTCT	0.612													3	34					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49692520	49692520	+	Missense_Mutation	SNP	C	T	T	rs150712047	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:49692520C>T	uc003cxe.3	+	5	5645	c.5531C>T	c.(5530-5532)GCC>GTC	p.A1844V		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1844					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CCCCACCGGGCCACCCCTGCA	0.642													12	48					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49695396	49695396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:49695396C>T	uc003cxe.3	+	5	8521	c.8407C>T	c.(8407-8409)CCT>TCT	p.P2803S		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2803					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		ACCCCTGTCCCCTCACCGGCT	0.622													6	60					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49702259	49702259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:49702259C>T	uc003cxe.3	+	10	11882	c.11768C>T	c.(11767-11769)TCC>TTC	p.S3923F		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3923					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		AAAAAATTTTCCTCATTCTGG	0.552													7	88					0	0	1	0	0
RNF123	63891	broad.mit.edu	37	3	49749975	49749975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:49749975C>T	uc003cxh.2	+	27	2646	c.2560C>T	c.(2560-2562)CGC>TGC	p.R854C	RNF123_uc010hky.1_Missense_Mutation_p.R516C|RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	854						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		GCACGGTGATCGCACAGGGTC	0.582													5	47					0	0	1	0	0
CAMKV	79012	broad.mit.edu	37	3	49897117	49897117	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:49897117G>A	uc003cxt.1	-	11	1333	c.1140C>T	c.(1138-1140)GCC>GCT	p.A380A	CAMKV_uc011bcy.1_Silent_p.A305A|CAMKV_uc003cxv.1_Silent_p.A352A|CAMKV_uc003cxw.1_Silent_p.A212A|CAMKV_uc003cxx.1_Silent_p.A212A|CAMKV_uc003cxu.2_Intron|CAMKV_uc011bcz.1_Intron|CAMKV_uc011bda.1_Intron	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	380	Ala-rich.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		GGTCTGCGGGGGCCACATTAT	0.647													10	100					0	0	1	0	0
MST1R	4486	broad.mit.edu	37	3	49935642	49935642	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:49935642G>A	uc003cxy.3	-	5	1986	c.1722C>T	c.(1720-1722)TTC>TTT	p.F574F	MST1R_uc011bdd.1_Silent_p.F574F|MST1R_uc011bde.1_Silent_p.F574F|MST1R_uc011bdf.1_Silent_p.F468F|MST1R_uc011bdc.1_5'Flank	NM_002447	NP_002438	Q04912	RON_HUMAN	macrophage stimulating 1 receptor precursor	574	IPT/TIG 1.|Extracellular (Potential).				cellular component movement|defense response|multicellular organismal development|positive regulation of cell proliferation|single fertilization|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|macrophage colony-stimulating factor receptor activity|protein binding			ovary(5)|lung(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.65e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00553)|Kidney(197;0.00625)		TGTGGGGGTGGAACTGAAATG	0.443													5	83					0	0	1	0	0
SEMA3F	6405	broad.mit.edu	37	3	50211707	50211707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:50211707G>A	uc003cyj.2	+	5	578	c.380G>A	c.(379-381)CGA>CAA	p.R127Q	SEMA3F_uc003cyk.2_Missense_Mutation_p.R127Q	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	127	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		CCCTGGAACCGAACACACCTG	0.662													5	72					0	0	1	0	0
SEMA3F	6405	broad.mit.edu	37	3	50219775	50219775	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:50219775C>T	uc003cyj.2	+	8	900	c.702C>T	c.(700-702)TTC>TTT	p.F234F	SEMA3F_uc003cyk.2_Silent_p.F203F	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	234	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		CAGCCATCTTCCGCACACTTG	0.582													4	102					0	0	1	0	0
SEMA3F	6405	broad.mit.edu	37	3	50222211	50222211	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:50222211G>A	uc003cyj.2	+	13	1618	c.1420G>A	c.(1420-1422)GCC>ACC	p.A474T	SEMA3F_uc003cyk.2_Missense_Mutation_p.A443T	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	474	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		GGTGGATGCAGCCGACGGGCG	0.667													4	19					0	0	1	0	0
GNAI2	2771	broad.mit.edu	37	3	50295059	50295059	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:50295059C>T	uc003cyq.1	+	8	1126	c.1005C>T	c.(1003-1005)TTC>TTT	p.F335F	GNAI2_uc003cyo.1_Silent_p.F319F|GNAI2_uc003cyp.1_Silent_p.F319F|GNAI2_uc010hlg.1_Silent_p.F254F|GNAI2_uc011bdn.1_Silent_p.F298F|GNAI2_uc003cyr.1_Silent_p.F254F|uc003cys.1_5'Flank	NM_002070	NP_002061	P04899	GNAI2_HUMAN	guanine nucleotide binding protein (G protein),	335					adenosine receptor signaling pathway|cell cycle|cell division|gamma-aminobutyric acid signaling pathway|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|platelet activation|response to nutrient|synaptic transmission	centrosome|heterotrimeric G-protein complex|midbody	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000288)|KIRC - Kidney renal clear cell carcinoma(197;0.00571)|Kidney(197;0.00651)		ACGTGCAGTTCGTGTTTGACG	0.567													4	46					0	0	1	0	0
C3orf45	132228	broad.mit.edu	37	3	50316590	50316590	+	Missense_Mutation	SNP	G	A	A	rs145420790		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:50316590G>A	uc003cyz.2	+	1	73	c.46G>A	c.(46-48)GAG>AAG	p.E16K		NM_153215	NP_694947	Q8N112	CC045_HUMAN	hypothetical protein LOC132228	16						integral to membrane				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		CATGCCTGAGGAGACCCAAGA	0.602													4	39					0	0	1	0	0
NPRL2	10641	broad.mit.edu	37	3	50385296	50385296	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:50385296G>A	uc003daj.1	-	10	1372	c.969C>T	c.(967-969)ATC>ATT	p.I323I	ZMYND10_uc003dag.1_5'Flank|ZMYND10_uc010hll.1_5'Flank|ZMYND10_uc003dah.1_5'Flank|ZMYND10_uc010hlm.1_5'Flank|NPRL2_uc003dai.1_Silent_p.I203I|CYB561D2_uc003dak.2_5'Flank	NM_006545	NP_006536	Q8WTW4	NPRL2_HUMAN	tumor suppressor candidate 4	323					negative regulation of kinase activity		protein binding|protein kinase activity			lung(1)	1						GTAGTCGCCTGATGAGGTTCT	0.587													6	94					0	0	1	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50421649	50421649	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:50421649G>A	uc003daq.2	-	6	668	c.630C>T	c.(628-630)ATC>ATT	p.I210I	CACNA2D2_uc003dap.2_Silent_p.I210I	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	210	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	TGTCCGTAGGGATCTGTACAG	0.562													13	207					0	0	1	0	0
HEMK1	51409	broad.mit.edu	37	3	50614589	50614589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:50614589C>T	uc003dau.2	+	5	817	c.521C>T	c.(520-522)TCC>TTC	p.S174F	HEMK1_uc003dav.2_Missense_Mutation_p.S174F|HEMK1_uc003daw.2_Missense_Mutation_p.S174F	NM_016173	NP_057257	Q9Y5R4	HEMK1_HUMAN	HemK methyltransferase family member 1	174					DNA methylation		DNA binding|N-methyltransferase activity|protein methyltransferase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000283)|KIRC - Kidney renal clear cell carcinoma(197;0.0179)|Kidney(197;0.0212)		GGAGCCATCTCCCTCAGCCTG	0.632													5	64					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51263087	51263087	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:51263087C>T	uc011bds.1	+	15	1283	c.1260C>T	c.(1258-1260)ATC>ATT	p.I420I		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	420	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CAGGTGATATCCGCAATGACC	0.468													15	70					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51264798	51264798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:51264798G>A	uc011bds.1	+	16	1485	c.1462G>A	c.(1462-1464)GGA>AGA	p.G488R		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	488	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TCCTCGCTGGGGAGAAATTAT	0.502													15	63					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51392422	51392422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:51392422C>T	uc011bds.1	+	41	4240	c.4217C>T	c.(4216-4218)CCT>CTT	p.P1406L		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1406	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CCCAACCATCCTGATGACGCC	0.607													3	35					0	0	1	0	0
GRM2	2912	broad.mit.edu	37	3	51747031	51747031	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:51747031C>T	uc010hlv.2	+	3	1232	c.993C>T	c.(991-993)TTC>TTT	p.F331F	GRM2_uc003dbo.3_Intron|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	331	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	CCTCCTACTTCCAGAGCCTGG	0.632													5	48					0	0	1	0	0
RRP9	9136	broad.mit.edu	37	3	51971732	51971732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:51971732G>A	uc003dbw.1	-	4	340	c.301C>T	c.(301-303)CGT>TGT	p.R101C		NM_004704	NP_004695	O43818	U3IP2_HUMAN	RNA, U3 small nucleolar interacting protein 2	101	Glu-rich.				rRNA processing	nucleolus|small nuclear ribonucleoprotein complex|small nucleolar ribonucleoprotein complex	RNA binding			breast(2)|ovary(1)	3				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.000553)|KIRC - Kidney renal clear cell carcinoma(197;0.000724)		TCAAATGCACGGGCCTCAGCC	0.622													9	109					0	0	1	0	0
ABHD14B	84836	broad.mit.edu	37	3	52003569	52003569	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52003569A>T	uc003dcm.2	-	4	1394	c.506T>A	c.(505-507)TTT>TAT	p.F169Y	PCBP4_uc003dch.1_5'Flank|PCBP4_uc003dci.1_5'Flank|PCBP4_uc003dcj.1_5'Flank|PCBP4_uc003dck.1_5'Flank|ABHD14B_uc010hly.2_Missense_Mutation_p.F73Y|ABHD14B_uc011bdy.1_Missense_Mutation_p.F169Y|ABHD14B_uc003dcn.2_Missense_Mutation_p.F169Y|ABHD14B_uc011bdz.1_3'UTR	NM_032750	NP_116139	Q96IU4	ABHEB_HUMAN	abhydrolase domain containing 14B	169						cytoplasm|nucleus	hydrolase activity				0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000548)|KIRC - Kidney renal clear cell carcinoma(197;0.00072)		CAGGTGCTCAAAGCTGGTCTG	0.597													7	145					0	0	1	0	0
TLR9	54106	broad.mit.edu	37	3	52255442	52255442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52255442C>T	uc003dda.1	-	2	3524	c.2890G>A	c.(2890-2892)GAC>AAC	p.D964N	TLR9_uc003ddb.2_Missense_Mutation_p.D1061N	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	964	TIR.|Cytoplasmic (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	ACCACGACGTCCTTGCGGTCC	0.701													6	49					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52365244	52365244	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52365244C>T	uc011bef.1	+	7	1213	c.952C>T	c.(952-954)CTG>TTG	p.L318L	DNAH1_uc003ddt.1_Silent_p.L318L	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	318	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GAAGCTATACCTGGTACACAA	0.552													3	18					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52390704	52390704	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52390704C>T	uc011bef.1	+	22	4029	c.3768C>T	c.(3766-3768)ATC>ATT	p.I1256I		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1256	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CTGAGGACATCAACCAGCAGC	0.592													4	36					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52395698	52395698	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52395698C>T	uc011bef.1	+	30	5157	c.4896C>T	c.(4894-4896)TTC>TTT	p.F1632F		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1632	CFDEFNR motif.|AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GGGCCTGCTTCGACGAGTTCA	0.642													3	5					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52398945	52398945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52398945C>T	uc011bef.1	+	34	5689	c.5428C>T	c.(5428-5430)CCC>TCC	p.P1810S		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1810					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CGACCTGTTTCCCACCATCAA	0.607													15	65					0	0	1	0	0
SEMA3G	56920	broad.mit.edu	37	3	52475386	52475386	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52475386G>A	uc003dea.1	-	7	707	c.707C>T	c.(706-708)TCT>TTT	p.S236F		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	236	Sema.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		GTCCTGGTCAGAGTTCTCAGG	0.627													5	41					0	0	1	0	0
SEMA3G	56920	broad.mit.edu	37	3	52475646	52475646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52475646C>T	uc003dea.1	-	6	611	c.611G>A	c.(610-612)CGA>CAA	p.R204Q		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	204	Sema.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		ACCTCCACTTCGGAAGATCAT	0.637													5	49					0	0	1	0	0
NISCH	11188	broad.mit.edu	37	3	52511653	52511653	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52511653C>T	uc011beg.1	+	10	1054	c.982C>T	c.(982-984)CTG>TTG	p.L328L	NISCH_uc003ded.3_Silent_p.L328L|NISCH_uc003dec.1_Silent_p.L328L	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	328	Necessary for homooligomerization and targeting to endosomes.|LRR 2.|Interaction with PAK1 (By similarity).				apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		TGTGGACAATCTGCAGGTAGT	0.532													11	88					0	0	1	0	0
NISCH	11188	broad.mit.edu	37	3	52523677	52523677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52523677C>T	uc011beg.1	+	18	3511	c.3439C>T	c.(3439-3441)CAC>TAC	p.H1147Y	NISCH_uc003ded.3_Missense_Mutation_p.H1147Y|NISCH_uc003dee.3_Missense_Mutation_p.H636Y|NISCH_uc003deg.1_RNA|NISCH_uc003deh.3_5'Flank	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	1147					apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		CGAGCTCTTCCACAGCAGCAT	0.672													9	62					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52552738	52552738	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52552738G>A	uc003dej.2	+	48	4962	c.4888_splice	c.e48-1	p.D1630_splice	STAB1_uc003dek.1_5'Flank|STAB1_uc003del.2_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor						cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CTCTGCTCCAGGATGAGCTGG	0.701													4	19					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52556155	52556155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52556155G>A	uc003dej.2	+	59	6448	c.6374G>A	c.(6373-6375)GGT>GAT	p.G2125D	STAB1_uc003dek.1_Missense_Mutation_p.G140D|STAB1_uc003del.2_Missense_Mutation_p.G12D	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	2125	EGF-like 15.|Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GACTACGAGGGTGATGGCTGG	0.662													6	48					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52557706	52557706	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52557706G>A	uc003dej.2	+	66	7403	c.7329G>A	c.(7327-7329)TGG>TGA	p.W2443*	STAB1_uc003del.2_Nonsense_Mutation_p.W355*	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	2443	Extracellular (Potential).|FAS1 7.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		TCATTGTGTGGGACATCATGG	0.632													5	45					0	0	1	0	0
TMEM110	375346	broad.mit.edu	37	3	52876860	52876861	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52876860_52876861CC>TA	uc003dge.2	-	7	815_816	c.734_735GG>TA	c.(733-735)CGG>CTA	p.R245L	MUSTN1_uc003dgb.3_Missense_Mutation_p.R37L|TMEM110_uc003dgc.3_Missense_Mutation_p.R245L	NM_198563	NP_940965	Q86TL2	TM110_HUMAN	transmembrane protein 110	245						integral to membrane				large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;7.72e-05)|Kidney(197;0.000777)|KIRC - Kidney renal clear cell carcinoma(197;0.000915)|OV - Ovarian serous cystadenocarcinoma(275;0.0541)		ATGCGGCCCTCCGGTAGCGGAC	0.589													5	43					0	0	1	0	0
TMEM110	375346	broad.mit.edu	37	3	52883818	52883818	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52883818G>A	uc003dge.2	-	4	498	c.417C>T	c.(415-417)TTC>TTT	p.F139F	TMEM110_uc003dgc.3_Silent_p.F139F	NM_198563	NP_940965	Q86TL2	TM110_HUMAN	transmembrane protein 110	139						integral to membrane				large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;7.72e-05)|Kidney(197;0.000777)|KIRC - Kidney renal clear cell carcinoma(197;0.000915)|OV - Ovarian serous cystadenocarcinoma(275;0.0541)		CATATTCGCCGAAGCGCAGGG	0.627													5	49					0	0	1	0	0
SFMBT1	51460	broad.mit.edu	37	3	52960048	52960048	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:52960048G>T	uc003dgf.2	-	11	1699	c.1130C>A	c.(1129-1131)CCG>CAG	p.P377Q	SFMBT1_uc010hmr.2_Missense_Mutation_p.P324Q|SFMBT1_uc003dgg.2_Missense_Mutation_p.P377Q|SFMBT1_uc003dgh.2_Missense_Mutation_p.P377Q	NM_001005159	NP_001005159	Q9UHJ3	SMBT1_HUMAN	Scm-like with four mbt domains 1	377	MBT 4.				regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.91e-05)|Kidney(197;0.000644)|KIRC - Kidney renal clear cell carcinoma(197;0.000792)|OV - Ovarian serous cystadenocarcinoma(275;0.113)		GGTCCTCACCGGAGGGAAGCA	0.557													7	114					3.09899e-07	3.13861e-07	1	1	0
CACNA1D	776	broad.mit.edu	37	3	53757636	53757636	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:53757636G>A	uc003dgv.3	+	13	2005	c.1842G>A	c.(1840-1842)GGG>GGA	p.G614G	CACNA1D_uc003dgu.3_Silent_p.G634G|CACNA1D_uc003dgy.3_Silent_p.G614G|CACNA1D_uc003dgw.3_Silent_p.G281G	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	614	Extracellular (Potential).|II.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	CTCCCCTGGGGATCTCTGTGT	0.473													34	153					0	0	1	0	0
CHDH	55349	broad.mit.edu	37	3	53851900	53851900	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:53851900G>A	uc003dgz.2	-	9	2129	c.1689C>T	c.(1687-1689)ATC>ATT	p.I563I		NM_018397	NP_060867	Q8NE62	CHDH_HUMAN	choline dehydrogenase precursor	563					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			ovary(1)|central_nervous_system(1)	2		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	CCTTCTCTGCGATCATGATTG	0.587													5	61					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56330154	56330154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:56330154C>T	uc003dhr.1	-	3	1223	c.967G>A	c.(967-969)GAG>AAG	p.E323K		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	323	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TTGTCATCCTCCAGGCTTTTG	0.448													13	160					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56468508	56468508	+	Silent	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:56468508T>G	uc003dhr.1	-	2	784	c.528A>C	c.(526-528)GGA>GGC	p.G176G		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	176	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TCATGGAAGATCCCAATTTGC	0.483													16	119					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56468774	56468774	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:56468774G>A	uc003dhr.1	-	2	518	c.262C>T	c.(262-264)CGA>TGA	p.R88*		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	88						cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TATACAGCTCGATTTGTAGCC	0.498													7	87					0	0	1	0	0
ARHGEF3	50650	broad.mit.edu	37	3	56763596	56763596	+	Missense_Mutation	SNP	G	A	A	rs138677398		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:56763596G>A	uc003dig.2	-	10	1452	c.1283C>T	c.(1282-1284)TCG>TTG	p.S428L	ARHGEF3_uc011bew.1_Missense_Mutation_p.S428L|ARHGEF3_uc003dih.2_Missense_Mutation_p.S460L|ARHGEF3_uc011bev.1_Missense_Mutation_p.S399L|ARHGEF3_uc003dif.2_Missense_Mutation_p.S434L|ARHGEF3_uc010hmy.1_Missense_Mutation_p.S226L	NM_019555	NP_062455	Q9NR81	ARHG3_HUMAN	Rho guanine nucleotide exchange factor 3 isoform	428	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0161)|Kidney(284;0.019)|OV - Ovarian serous cystadenocarcinoma(275;0.193)		GGCTTGTAGCGAGTGGGTCTG	0.423													6	69					0	0	1	0	0
IL17RD	54756	broad.mit.edu	37	3	57132205	57132205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:57132205G>A	uc003dil.2	-	12	1615	c.1526C>T	c.(1525-1527)TCC>TTC	p.S509F	IL17RD_uc003dik.2_Missense_Mutation_p.S485F|IL17RD_uc010hna.2_Missense_Mutation_p.S365F|IL17RD_uc011bex.1_Missense_Mutation_p.S365F	NM_017563	NP_060033	Q8NFM7	I17RD_HUMAN	interleukin 17 receptor D precursor	509	SEFIR.|Cytoplasmic (Potential).					Golgi membrane|integral to membrane|plasma membrane	receptor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0173)|Kidney(284;0.0204)		GTGCAAGTGGGAACAGAGCTG	0.582													7	26					0	0	1	0	0
IL17RD	54756	broad.mit.edu	37	3	57132258	57132258	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:57132258G>A	uc003dil.2	-	12	1562	c.1473C>T	c.(1471-1473)ATC>ATT	p.I491I	IL17RD_uc003dik.2_Silent_p.I467I|IL17RD_uc010hna.2_Silent_p.I347I|IL17RD_uc011bex.1_Silent_p.I347I	NM_017563	NP_060033	Q8NFM7	I17RD_HUMAN	interleukin 17 receptor D precursor	491	SEFIR.|Cytoplasmic (Potential).					Golgi membrane|integral to membrane|plasma membrane	receptor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0173)|Kidney(284;0.0204)		TCAGGTCTAGGATACCGGGGA	0.582													4	26					0	0	1	0	0
DNAH12	201625	broad.mit.edu	37	3	57494115	57494115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:57494115C>T	uc003dit.2	-	7	876	c.695G>A	c.(694-696)GGA>GAA	p.G232E	DNAH12_uc003diu.2_Missense_Mutation_p.G232E	NM_178504	NP_848599	Q6ZR08	DYH12_HUMAN	dynein heavy chain domain 2 isoform 1	232	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			pancreas(1)|skin(1)	2						TTACCTAATTCCTGTGAAGTC	0.294													4	20					0	0	1	0	0
SLMAP	7871	broad.mit.edu	37	3	57835523	57835523	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:57835523C>T	uc003dje.1	+	5	704	c.499C>T	c.(499-501)CAG>TAG	p.Q167*	SLMAP_uc003djc.1_Nonsense_Mutation_p.Q167*|SLMAP_uc003djd.1_Nonsense_Mutation_p.Q167*|SLMAP_uc003djf.1_Nonsense_Mutation_p.Q167*	NM_007159	NP_009090	Q14BN4	SLMAP_HUMAN	sarcolemma associated protein	167	Cytoplasmic (Potential).|Potential.				muscle contraction|protein folding	integral to plasma membrane|microtubule organizing center|prefoldin complex|sarcolemma|smooth endoplasmic reticulum	unfolded protein binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000271)|KIRC - Kidney renal clear cell carcinoma(284;0.0602)|Kidney(284;0.0754)|OV - Ovarian serous cystadenocarcinoma(275;0.182)		GGAACTATTCCAGCTTTCTCA	0.313													9	119					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58098016	58098016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:58098016C>T	uc003djj.2	+	18	2881	c.2716C>T	c.(2716-2718)CAC>TAC	p.H906Y	FLNB_uc010hne.2_Missense_Mutation_p.H906Y|FLNB_uc003djk.2_Missense_Mutation_p.H906Y|FLNB_uc010hnf.2_Missense_Mutation_p.H906Y|FLNB_uc003djl.2_Missense_Mutation_p.H737Y|FLNB_uc003djm.2_Missense_Mutation_p.H737Y	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	906	Filamin 7.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		TGACTACTCTCACACGGTTAA	0.557													10	86					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58108937	58108937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:58108937G>A	uc003djj.2	+	21	3409	c.3244G>A	c.(3244-3246)GAG>AAG	p.E1082K	FLNB_uc010hne.2_Missense_Mutation_p.E1082K|FLNB_uc003djk.2_Missense_Mutation_p.E1082K|FLNB_uc010hnf.2_Missense_Mutation_p.E1082K|FLNB_uc003djl.2_Missense_Mutation_p.E913K|FLNB_uc003djm.2_Missense_Mutation_p.E913K	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1082	Filamin 9.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		AGGTCCGTGCGAGGCCAAAAT	0.567													5	105					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58109069	58109069	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:58109069G>A	uc003djj.2	+	21	3541	c.3376G>A	c.(3376-3378)GAC>AAC	p.D1126N	FLNB_uc010hne.2_Missense_Mutation_p.D1126N|FLNB_uc003djk.2_Missense_Mutation_p.D1126N|FLNB_uc010hnf.2_Missense_Mutation_p.D1126N|FLNB_uc003djl.2_Missense_Mutation_p.D957N|FLNB_uc003djm.2_Missense_Mutation_p.D957N	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1126	Filamin 9.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CTTCAAAGCTGACATTGAAAT	0.557													13	124					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58112433	58112433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:58112433C>T	uc003djj.2	+	24	4331	c.4166C>T	c.(4165-4167)CCT>CTT	p.P1389L	FLNB_uc010hne.2_Missense_Mutation_p.P1389L|FLNB_uc003djk.2_Missense_Mutation_p.P1389L|FLNB_uc010hnf.2_Missense_Mutation_p.P1389L|FLNB_uc003djl.2_Missense_Mutation_p.P1220L|FLNB_uc003djm.2_Missense_Mutation_p.P1220L	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1389	Filamin 12.|Interaction with FBLP1.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GAGTACATTCCTTTCGCACCG	0.488													6	75					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58124079	58124079	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:58124079G>A	uc003djj.2	+	29	5097	c.4932G>A	c.(4930-4932)GGG>GGA	p.G1644G	FLNB_uc010hne.2_Silent_p.G1675G|FLNB_uc003djk.2_Silent_p.G1644G|FLNB_uc010hnf.2_Silent_p.G1644G|FLNB_uc003djl.2_Silent_p.G1475G|FLNB_uc003djm.2_Silent_p.G1475G	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1644	Filamin 15.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		AGACTGCCGGGAAGGGTAAAG	0.522													6	64					0	0	1	0	0
DNASE1L3	1776	broad.mit.edu	37	3	58179124	58179124	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:58179124G>A	uc003djo.1	-	7	844	c.747C>T	c.(745-747)CCC>CCT	p.P249P	DNASE1L3_uc011bfd.1_Silent_p.P219P|DNASE1L3_uc003djp.1_Silent_p.P249P|DNASE1L3_uc003djq.1_Silent_p.P249P	NM_004944	NP_004935	Q13609	DNSL3_HUMAN	deoxyribonuclease I-like 3 precursor	249					apoptosis|DNA catabolic process	nucleus	calcium ion binding|DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters			breast(2)|large_intestine(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.00021)|KIRC - Kidney renal clear cell carcinoma(284;0.0445)|Kidney(284;0.0556)|OV - Ovarian serous cystadenocarcinoma(275;0.202)		TGTTTGACTTGGGAACAACAG	0.433													8	50					0	0	1	0	0
DNASE1L3	1776	broad.mit.edu	37	3	58196622	58196622	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:58196622C>T	uc003djo.1	-	1	109	c.12G>A	c.(10-12)GAG>GAA	p.E4E	DNASE1L3_uc011bfd.1_Silent_p.E4E|DNASE1L3_uc003djp.1_Silent_p.E4E|DNASE1L3_uc003djq.1_Silent_p.E4E	NM_004944	NP_004935	Q13609	DNSL3_HUMAN	deoxyribonuclease I-like 3 precursor	4					apoptosis|DNA catabolic process	nucleus	calcium ion binding|DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters			breast(2)|large_intestine(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.00021)|KIRC - Kidney renal clear cell carcinoma(284;0.0445)|Kidney(284;0.0556)|OV - Ovarian serous cystadenocarcinoma(275;0.202)		GTGGGGCCAGCTCCCGTGACA	0.592													7	25					0	0	1	0	0
RPP14	11102	broad.mit.edu	37	3	58296241	58296241	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:58296241C>T	uc010hnh.2	+	3	513	c.85C>T	c.(85-87)CAA>TAA	p.Q29*	RPP14_uc010hni.2_5'UTR|RPP14_uc003dju.3_Nonsense_Mutation_p.Q29*|RPP14_uc003djv.3_5'UTR|RPP14_uc003djw.3_5'UTR	NM_001098783	NP_001092253	O95059	RPP14_HUMAN	ribonuclease P 14kDa subunit	29					tRNA processing	nucleus	identical protein binding|ribonuclease P activity|RNA binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000187)|KIRC - Kidney renal clear cell carcinoma(10;0.0102)|Kidney(10;0.0118)|OV - Ovarian serous cystadenocarcinoma(275;0.191)		TAGAGAATTTCAAGATTGTGG	0.333													6	80					0	0	1	0	0
KCTD6	200845	broad.mit.edu	37	3	58487097	58487097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:58487097C>T	uc003dkj.3	+	3	569	c.452C>T	c.(451-453)TCC>TTC	p.S151F	KCTD6_uc003dki.3_Missense_Mutation_p.S151F|KCTD6_uc003dkk.3_Missense_Mutation_p.S151F	NM_001128214	NP_001121686	Q8NC69	KCTD6_HUMAN	potassium channel tetramerisation domain	151						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000177)|Kidney(10;0.00229)|KIRC - Kidney renal clear cell carcinoma(10;0.00258)|OV - Ovarian serous cystadenocarcinoma(275;0.148)		AAGGTCCATTCCTTACTAGAA	0.433													9	38					0	0	1	0	0
ACOX2	8309	broad.mit.edu	37	3	58519721	58519721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:58519721C>T	uc003dkl.2	-	4	650	c.475G>A	c.(475-477)GGG>AGG	p.G159R		NM_003500	NP_003491	Q99424	ACOX2_HUMAN	acyl-Coenzyme A oxidase 2	159					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity|acyl-CoA dehydrogenase activity|pristanoyl-CoA oxidase activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000194)|Kidney(10;0.00255)|KIRC - Kidney renal clear cell carcinoma(10;0.00268)|OV - Ovarian serous cystadenocarcinoma(275;0.156)		cctAGCTCACCATGTCCCAAC	0.289													7	65					0	0	1	0	0
ATXN7	6314	broad.mit.edu	37	3	63981439	63981439	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:63981439C>T	uc003dlw.3	+	12	2494	c.1941C>T	c.(1939-1941)TCC>TCT	p.S647S	ATXN7_uc003dlv.2_Silent_p.S647S|ATXN7_uc010hnv.2_Silent_p.S647S|ATXN7_uc011bfn.1_Silent_p.S502S	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	647	Poly-Ser.|Ser-rich.				cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		GACAAGTGTCCTCTTCATCCT	0.512													7	112					0	0	1	0	0
ATXN7	6314	broad.mit.edu	37	3	63981841	63981841	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:63981841C>T	uc003dlw.3	+	12	2896	c.2343C>T	c.(2341-2343)ACC>ACT	p.T781T	ATXN7_uc003dlv.2_Silent_p.T781T|ATXN7_uc010hnv.2_Silent_p.T781T|ATXN7_uc011bfn.1_Silent_p.T636T	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	781	Ser-rich.				cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		GCCCCCCCACCGGGAGCCCTG	0.532													5	30					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64636703	64636703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:64636703C>T	uc003dmg.2	-	9	1485	c.1453G>A	c.(1453-1455)GAG>AAG	p.E485K	ADAMTS9_uc011bfo.1_Missense_Mutation_p.E457K|ADAMTS9_uc003dmh.1_Missense_Mutation_p.E314K|ADAMTS9_uc003dmk.1_Missense_Mutation_p.E485K	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	485	Peptidase M12B.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TCTAAAAACTCAGTGATATAT	0.408													15	250					0	0	1	0	0
MAGI1	9223	broad.mit.edu	37	3	65342188	65342188	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:65342188C>T	uc003dmn.2	-	23	4780	c.4254G>A	c.(4252-4254)AGG>AGA	p.R1418R	MAGI1_uc003dmm.2_3'UTR	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	1447					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		CCTCTCTGTTCCTTTTGTCCA	0.657													8	124					0	0	1	0	0
MAGI1	9223	broad.mit.edu	37	3	65342667	65342667	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:65342667T>C	uc003dmn.2	-	23	4301	c.3775A>G	c.(3775-3777)AAG>GAG	p.K1259E	MAGI1_uc003dmm.2_3'UTR	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	1288					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		TGTGCCCGCTTTTCCCCATGT	0.582													6	111					0	0	1	0	0
SLC25A26	115286	broad.mit.edu	37	3	66428150	66428150	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:66428150C>T	uc011bfq.1	+	11	1472	c.744C>T	c.(742-744)ATC>ATT	p.I248I	SLC25A26_uc011bfs.1_Silent_p.I160I|SLC25A26_uc011bft.1_RNA|SLC25A26_uc011bfr.1_Silent_p.I248I|SLC25A26_uc003dmt.2_3'UTR	NM_173471	NP_775742	Q70HW3	SAMC_HUMAN	solute carrier family 25, member 26 isoform a	248	Solcar 3.|Helical; Name=6; (Potential).					integral to membrane|mitochondrial inner membrane|nucleus	S-adenosylmethionine transmembrane transporter activity			pancreas(1)	1		Lung NSC(201;0.00774)		BRCA - Breast invasive adenocarcinoma(55;0.00046)|KIRC - Kidney renal clear cell carcinoma(15;0.0515)|Kidney(15;0.0648)		TGGCAGCCATCAGTCTGGGAG	0.443													11	148					0	0	1	0	0
KBTBD8	84541	broad.mit.edu	37	3	67054611	67054611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:67054611C>T	uc003dmy.2	+	3	1273	c.1220C>T	c.(1219-1221)TCA>TTA	p.S407L	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	407	Kelch 2.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		GGGAGAAACTCACTAAAATCT	0.438													6	59					0	0	1	0	0
UBA3	9039	broad.mit.edu	37	3	69105771	69105771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:69105771C>T	uc003dno.2	-	14	1095	c.1075G>A	c.(1075-1077)GAA>AAA	p.E359K	UBA3_uc003dnq.2_Missense_Mutation_p.E345K|UBA3_uc011bfy.1_Missense_Mutation_p.E182K|UBA3_uc011bfz.1_Missense_Mutation_p.E182K	NM_003968	NP_003959	Q8TBC4	UBA3_HUMAN	ubiquitin-activating enzyme 3 isoform 1	359					protein neddylation|proteolysis	nucleus	acid-amino acid ligase activity|ATP binding|protein heterodimerization activity			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.98e-05)|Epithelial(33;0.000363)|LUSC - Lung squamous cell carcinoma(21;0.012)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.206)|Kidney(39;0.241)		ACCTTTCTTTCTGCTTCAAAT	0.279													9	55					0	0	1	0	0
ARL6IP5	10550	broad.mit.edu	37	3	69151146	69151146	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:69151146C>T	uc003dnr.2	+	2	442	c.333C>T	c.(331-333)TTC>TTT	p.F111F		NM_006407	NP_006398	O75915	PRAF3_HUMAN	ADP-ribosylation-like factor 6 interacting	111	Helical; (Potential).				L-glutamate transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.78e-05)|Epithelial(33;0.000818)|LUSC - Lung squamous cell carcinoma(21;0.0118)|Lung(16;0.0189)|KIRC - Kidney renal clear cell carcinoma(39;0.203)|Kidney(39;0.238)		CGAGCTATTTCCTTATCTCCA	0.453													4	38					0	0	1	0	0
PROK2	60675	broad.mit.edu	37	3	71821909	71821909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:71821909G>A	uc003dpa.3	-	4	510	c.356C>T	c.(355-357)TCA>TTA	p.S119L	PROK2_uc003doz.3_Missense_Mutation_p.S98L	NM_001126128	NP_001119600	Q9HC23	PROK2_HUMAN	prokineticin 2 isoform a precursor	119					activation of MAPK activity|angiogenesis|anti-apoptosis|cell proliferation|chemotaxis|elevation of cytosolic calcium ion concentration|inflammatory response|neuropeptide signaling pathway|positive regulation of smooth muscle contraction|sensory perception of pain|spermatogenesis	extracellular region	G-protein-coupled receptor binding				0		Prostate(10;0.00899)		BRCA - Breast invasive adenocarcinoma(55;1.89e-05)|Epithelial(33;0.000173)|LUSC - Lung squamous cell carcinoma(21;0.00168)|Lung(16;0.00306)		TCGGTTAAATGAAGTCCGTAA	0.413													6	46					0	0	1	0	0
PDZRN3	23024	broad.mit.edu	37	3	73433842	73433842	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:73433842G>A	uc003dpl.1	-	10	1971	c.1875C>T	c.(1873-1875)TTC>TTT	p.F625F	PDZRN3_uc011bgh.1_Silent_p.F282F|PDZRN3_uc010hoe.1_Silent_p.F323F|PDZRN3_uc011bgf.1_Silent_p.F342F|PDZRN3_uc011bgg.1_Silent_p.F345F	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	625							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		CGGCCGAAATGAAAGACTCGT	0.662													5	87					0	0	1	0	0
CNTN3	5067	broad.mit.edu	37	3	74349090	74349090	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:74349090C>T	uc003dpm.1	-	16	2176	c.2096_splice	c.e16-1	p.V699_splice		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor						cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		ACTTCTGGAACTATACAGGTC	0.378													3	28					0	0	1	0	0
EPHA3	2042	broad.mit.edu	37	3	89259167	89259167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:89259167G>A	uc003dqy.2	+	3	536	c.311G>A	c.(310-312)CGA>CAA	p.R104Q	EPHA3_uc003dqx.1_Missense_Mutation_p.R104Q|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	104	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		TTCACTCTACGAGACTGCAAT	0.443										TSP Lung(6;0.00050)			5	41					0	0	1	0	0
ARL13B	200894	broad.mit.edu	37	3	93758803	93758803	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:93758803T>G	uc003drc.2	+	6	1055	c.769T>G	c.(769-771)TTC>GTC	p.F257V	ARL13B_uc010hop.2_Missense_Mutation_p.F108V|ARL13B_uc003drd.2_Missense_Mutation_p.F150V|ARL13B_uc003dre.2_Missense_Mutation_p.F242V|ARL13B_uc003drf.2_Missense_Mutation_p.F257V|ARL13B_uc003drg.2_Missense_Mutation_p.F154V	NM_182896	NP_878899	Q3SXY8	AR13B_HUMAN	ADP-ribosylation factor-like 2-like 1 isoform 1	257							GTP binding				0						AACGAATCCTTTCCAGCCAAT	0.393													5	46					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	96706185	96706185	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:96706185C>T	uc010how.1	+	3	505	c.462C>T	c.(460-462)ATC>ATT	p.I154I	EPHA6_uc003drp.1_Silent_p.I154I	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	59	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GGGATGCCATCACTGAAATGG	0.348													5	34					0	0	1	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806084	97806084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:97806084C>T	uc011bgs.1	+	1	68	c.68C>T	c.(67-69)CCA>CTA	p.P23L		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACAGATCGACCATGGCTGCAC	0.423													11	70					0	0	1	0	0
OR5H15	403274	broad.mit.edu	37	3	97887660	97887660	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:97887660C>T	uc011bgu.1	+	1	117	c.117C>T	c.(115-117)ATC>ATT	p.I39I		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	39	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCATCACCATCATGGGGAATC	0.413													4	31					0	0	1	0	0
OR5H2	79310	broad.mit.edu	37	3	98001873	98001873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:98001873C>T	uc003dsj.1	+	1	142	c.142C>T	c.(142-144)CTT>TTT	p.L48F		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	48	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TGTGTGGAACCTTGGTCTGAT	0.433													11	94					0	0	1	0	0
OR5H2	79310	broad.mit.edu	37	3	98001937	98001937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:98001937G>A	uc003dsj.1	+	1	206	c.206G>A	c.(205-207)GGG>GAG	p.G69E		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TTTTTTCTTGGGAGTTTAGCC	0.403													7	79					0	0	1	0	0
OR5K3	403277	broad.mit.edu	37	3	98109980	98109980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:98109980G>A	uc011bgw.1	+	1	471	c.471G>A	c.(469-471)ATG>ATA	p.M157I		NM_001005516	NP_001005516	A6NET4	OR5K3_HUMAN	olfactory receptor, family 5, subfamily K,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGCATCCCATGATTGAAGTAG	0.423													4	24					0	0	1	0	0
SENP7	57337	broad.mit.edu	37	3	101086763	101086763	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:101086763G>A	uc003dut.2	-	8	1000	c.889C>T	c.(889-891)CTG>TTG	p.L297L	SENP7_uc003duu.2_Silent_p.L232L|SENP7_uc003duv.2_Silent_p.L264L|SENP7_uc003duw.2_Silent_p.L231L|SENP7_uc003dux.2_Silent_p.L133L	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	297					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						CTGGAAATCAGAGTGAGTTCC	0.358													3	14					0	0	1	0	0
CCDC54	84692	broad.mit.edu	37	3	107096546	107096546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:107096546C>T	uc003dwi.1	+	1	359	c.112C>T	c.(112-114)CGG>TGG	p.R38W		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	38											0						ATGTAAGATTCGGCACCAAGA	0.403													4	42					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108107858	108107858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:108107858C>T	uc003dxa.1	-	39	5611	c.5554G>A	c.(5554-5556)GCC>ACC	p.A1852T		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1852	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						AGTCTGCGGGCTCCCCTCTGG	0.552													5	31					0	0	1	0	0
DPPA4	55211	broad.mit.edu	37	3	109046861	109046861	+	Silent	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:109046861A>G	uc003dxq.3	-	7	944	c.889T>C	c.(889-891)TTA>CTA	p.L297L	DPPA4_uc011bho.1_3'UTR	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	297						nucleus	protein binding			upper_aerodigestive_tract(1)	1						CTTTTTATTAAGACCTTGTTC	0.353													11	134					0	0	1	0	0
CD200R1	131450	broad.mit.edu	37	3	112648243	112648243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:112648243G>A	uc003dzk.1	-	3	478	c.245C>T	c.(244-246)CCT>CTT	p.P82L	CD200R1_uc003dzj.1_Missense_Mutation_p.P105L|CD200R1_uc011bhx.1_Missense_Mutation_p.P60L|CD200R1_uc003dzl.1_Missense_Mutation_p.P105L|CD200R1_uc003dzm.1_Missense_Mutation_p.P82L	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	82	Ig-like V-type.|Extracellular (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						TGTGCAGGAAGGCTGGCCTCT	0.428													3	24					0	0	1	0	0
BOC	91653	broad.mit.edu	37	3	112991351	112991351	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:112991351C>T	uc003dzx.2	+	7	1383	c.762C>T	c.(760-762)GCC>GCT	p.A254A	BOC_uc003dzy.2_Silent_p.A254A|BOC_uc003dzz.2_Silent_p.A254A|BOC_uc003eab.2_5'UTR	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	254	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			AGTGTGTGGCCAGTGGAATCC	0.612													9	151					0	0	1	0	0
SIDT1	54847	broad.mit.edu	37	3	113329877	113329877	+	Silent	SNP	C	T	T	rs145960933	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:113329877C>T	uc003eak.2	+	18	2394	c.1743C>T	c.(1741-1743)ATC>ATT	p.I581I	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Silent_p.I581I|SIDT1_uc011big.1_Silent_p.I334I|SIDT1_uc011bih.1_RNA|SIDT1_uc011bii.1_Silent_p.I34I	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	581	Helical; (Potential).					integral to membrane		p.I581I(1)		ovary(3)|pancreas(1)|skin(1)	5						TGTACATGATCGCTGGCCTGT	0.498													4	56					0	0	1	0	0
PLA1A	51365	broad.mit.edu	37	3	119348287	119348287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:119348287C>T	uc003ecu.2	+	11	1382	c.1343C>T	c.(1342-1344)TCC>TTC	p.S448F	PLA1A_uc003ecv.2_Missense_Mutation_p.S432F|PLA1A_uc003ecw.2_RNA|PLA1A_uc011bjc.1_Missense_Mutation_p.S275F	NM_015900	NP_056984	Q53H76	PLA1A_HUMAN	phospholipase A1 member A precursor	448	Involved in the recognition of diacyl- phospholipids.				lipid catabolic process|phosphatidylserine metabolic process	extracellular region	phospholipase A1 activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GTGACTGTTTCCTGTGACCTG	0.453													10	59					0	0	1	0	0
C3orf15	89876	broad.mit.edu	37	3	119445065	119445065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:119445065G>A	uc003ede.3	+	7	807	c.730G>A	c.(730-732)GCC>ACC	p.A244T	C3orf15_uc010hqy.1_Missense_Mutation_p.A244T|C3orf15_uc010hqz.2_Missense_Mutation_p.A182T|C3orf15_uc011bjd.1_Missense_Mutation_p.A118T|C3orf15_uc011bje.1_Missense_Mutation_p.A224T|C3orf15_uc010hra.1_Missense_Mutation_p.A5T	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	244						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		GATAGAAAGAGCCCGCGAGAA	0.547													3	9					0	0	1	0	0
GPR156	165829	broad.mit.edu	37	3	119886360	119886360	+	Missense_Mutation	SNP	C	T	T	rs150001619		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:119886360C>T	uc011bjf.1	-	9	1964	c.1964G>A	c.(1963-1965)CGA>CAA	p.R655Q	GPR156_uc011bjg.1_Missense_Mutation_p.R651Q	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	655	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		AGAAGGTCTTCGTACTCTGGA	0.572													7	65					0	0	1	0	0
GPR156	165829	broad.mit.edu	37	3	119911852	119911852	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:119911852G>A	uc011bjf.1	-	4	408	c.408C>T	c.(406-408)GGC>GGT	p.G136G	GPR156_uc011bjg.1_Silent_p.G136G	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	136	Helical; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		CCAGAATGGGGCCAAACACAA	0.512													5	28					0	0	1	0	0
HGD	3081	broad.mit.edu	37	3	120347241	120347241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:120347241C>T	uc003edw.2	-	14	1694	c.1324G>A	c.(1324-1326)GCA>ACA	p.A442T	HGD_uc003edv.2_Missense_Mutation_p.A301T	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	442					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		TTAGGTTCTGCTGGGTTCCTG	0.473													7	78					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	121100150	121100150	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:121100150A>T	uc003eec.3	+	23	2570	c.2430A>T	c.(2428-2430)GAA>GAT	p.E810D	STXBP5L_uc011bji.1_Missense_Mutation_p.E786D	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	810					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AAAACCGAGAAAATTCCTATA	0.294													4	19					0	0	1	0	0
POLQ	10721	broad.mit.edu	37	3	121240877	121240877	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:121240877G>A	uc003eee.3	-	8	1357	c.1228C>T	c.(1228-1230)CCA>TCA	p.P410S		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	410	Helicase C-terminal.				DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		ACTCCCCATGGTACAGTTTTC	0.363								DNA_polymerases_(catalytic_subunits)					5	66					0	0	1	0	0
ARGFX	503582	broad.mit.edu	37	3	121305240	121305240	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:121305240C>T	uc003eef.2	+	5	836	c.741C>T	c.(739-741)TTC>TTT	p.F247F		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	247						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		GCTCTTCTTTCCACTGTCTGT	0.468													5	53					0	0	1	0	0
FBXO40	51725	broad.mit.edu	37	3	121345646	121345646	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:121345646G>A	uc003eeg.2	+	4	2229	c.2019G>A	c.(2017-2019)GAG>GAA	p.E673E		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	673					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		ACATTGTAGAGCACAAAACTG	0.493													8	84					0	0	1	0	0
HCLS1	3059	broad.mit.edu	37	3	121353213	121353213	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:121353213C>T	uc003eeh.3	-	10	869	c.744G>A	c.(742-744)GAG>GAA	p.E248E	HCLS1_uc011bjj.1_Silent_p.E211E|HCLS1_uc011bjk.1_RNA	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	248					erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		GCTTCCTCTTCTCCTCAGCCA	0.552													7	50					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121643849	121643849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:121643849C>T	uc003eep.2	+	13	1246	c.1093C>T	c.(1093-1095)CGT>TGT	p.R365C	SLC15A2_uc011bjn.1_Missense_Mutation_p.R334C	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	365					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TGTCATTTATCGTCTGGTCTC	0.368													14	81					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121659764	121659764	+	Missense_Mutation	SNP	G	T	T	rs150691938		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:121659764G>T	uc003eep.2	+	22	2253	c.2100G>T	c.(2098-2100)AAG>AAT	p.K700N	SLC15A2_uc011bjn.1_Missense_Mutation_p.K669N	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	700					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TTCCTGTAAAGACAGAGGATA	0.478													8	47					5.18039e-06	5.24434e-06	1	1	0
CASR	846	broad.mit.edu	37	3	121980581	121980581	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:121980581G>A	uc003eev.3	+	4	1071	c.699G>A	c.(697-699)AGG>AGA	p.R233R	CASR_uc003eew.3_Silent_p.R233R	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	233	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CTGAGGAAAGGGATATCTGCA	0.502													6	136					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122002763	122002763	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:122002763C>T	uc003eev.3	+	7	2334	c.1962C>T	c.(1960-1962)CTC>CTT	p.L654L	CASR_uc003eew.3_Silent_p.L664L	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	654	Helical; Name=2; (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCTACCTCCTCCTCTTCTCCC	0.592													6	96					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122003196	122003196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:122003196G>A	uc003eev.3	+	7	2767	c.2395G>A	c.(2395-2397)GAG>AAG	p.E799K	CASR_uc003eew.3_Missense_Mutation_p.E809K	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	799	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GAAGCTGCCGGAGAACTTCAA	0.547													4	38					0	0	1	0	0
PARP9	83666	broad.mit.edu	37	3	122274297	122274297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:122274297G>A	uc010hri.2	-	4	971	c.826C>T	c.(826-828)CAC>TAC	p.H276Y	PARP9_uc003eff.3_Missense_Mutation_p.H241Y|PARP9_uc011bjs.1_Missense_Mutation_p.H241Y|PARP9_uc003efg.2_Intron|PARP9_uc003efi.2_Missense_Mutation_p.H241Y|PARP9_uc003efh.2_Missense_Mutation_p.H276Y|PARP9_uc003efj.2_Missense_Mutation_p.H241Y	NM_001146102	NP_001139574	Q8IXQ6	PARP9_HUMAN	poly (ADP-ribose) polymerase family, member 9	276	Macro 1.				cell migration	cytosol|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)|pancreas(1)|prostate(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0519)		CTCACCAGGTGAATTTCTTTC	0.428													13	88					0	0	1	0	0
ADCY5	111	broad.mit.edu	37	3	123005614	123005614	+	Missense_Mutation	SNP	C	T	T	rs148824947		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:123005614C>T	uc003egh.1	-	20	3575	c.3575G>A	c.(3574-3576)CGA>CAA	p.R1192Q	ADCY5_uc003egg.1_Missense_Mutation_p.R850Q	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	1192	Cytoplasmic (Potential).|Guanylate cyclase 2.				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		CTGAGGCTTTCGTGCCCCTAT	0.617											OREG0015741	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	40					0	0	1	0	0
ADCY5	111	broad.mit.edu	37	3	123019025	123019025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:123019025C>T	uc003egh.1	-	15	2842	c.2842G>A	c.(2842-2844)GAG>AAG	p.E948K	ADCY5_uc003egg.1_Missense_Mutation_p.E581K|ADCY5_uc003egi.1_Missense_Mutation_p.E507K	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	948	Helical; (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		CCTGGCACCTCCACGATGAGC	0.627													4	50					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123366088	123366088	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:123366088G>A	uc003ego.2	-	27	4884	c.4602C>T	c.(4600-4602)ATC>ATT	p.I1534I	MYLK_uc010hrr.2_Intron|MYLK_uc011bjv.1_Silent_p.I334I|MYLK_uc011bjw.1_Silent_p.I1534I|MYLK_uc003egp.2_Silent_p.I1465I|MYLK_uc003egq.2_Silent_p.I1534I|MYLK_uc003egr.2_Silent_p.I1465I|MYLK_uc003egs.2_Silent_p.I1358I	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1534	Protein kinase.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		GGACCATGACGATGTTGGCCT	0.567													6	43					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123419371	123419371	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:123419371G>A	uc003ego.2	-	18	3226	c.2944C>T	c.(2944-2946)CGC>TGC	p.R982C	MYLK_uc011bjw.1_Missense_Mutation_p.R982C|MYLK_uc003egp.2_Missense_Mutation_p.R913C|MYLK_uc003egq.2_Missense_Mutation_p.R982C|MYLK_uc003egr.2_Missense_Mutation_p.R913C|MYLK_uc003egs.2_Missense_Mutation_p.R806C|MYLK_uc003egt.2_Missense_Mutation_p.R173C	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	982	1-5; truncated.|5 X 28 AA approximate tandem repeats.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		AGCACTGAGCGAAAATCCGGG	0.587													6	50					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123458800	123458800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:123458800C>T	uc003ego.2	-	6	704	c.422G>A	c.(421-423)GGG>GAG	p.G141E	MYLK_uc011bjw.1_Missense_Mutation_p.G141E|MYLK_uc003egp.2_Missense_Mutation_p.G141E|MYLK_uc003egq.2_Missense_Mutation_p.G141E|MYLK_uc003egr.2_Missense_Mutation_p.G141E|MYLK_uc003egs.2_5'UTR|MYLK_uc010hrs.1_Missense_Mutation_p.G141E	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	141					aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CAGGACTTACCCTAAGGTTTT	0.473													21	149					0	0	1	0	0
HEG1	57493	broad.mit.edu	37	3	124732234	124732234	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:124732234G>A	uc003ehs.3	-	6	2257	c.2189C>T	c.(2188-2190)CCA>CTA	p.P730L	HEG1_uc011bke.1_Missense_Mutation_p.P830L	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	730	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						GACAGAAAGTGGGGCAGATGT	0.488													5	111					0	0	1	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125877477	125877477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:125877477C>T	uc003eim.1	-	3	323	c.133G>A	c.(133-135)GAA>AAA	p.E45K	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.E45K|ALDH1L1_uc003eio.2_5'Flank|ALDH1L1_uc010hsf.1_Missense_Mutation_p.E71K|ALDH1L1_uc003eip.1_5'UTR|ALDH1L1_uc011bkj.1_Intron	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	45	GART.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	TTCTCAGCTTCCAGACCTGTG	0.572													11	43					0	0	1	0	0
UROC1	131669	broad.mit.edu	37	3	126219538	126219538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:126219538C>T	uc003eiz.1	-	11	1177	c.1145G>A	c.(1144-1146)AGC>AAC	p.S382N	UROC1_uc010hsi.1_Missense_Mutation_p.S442N	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	382					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		CAAGTAGCACCTTTCCTGGAC	0.517													7	85					0	0	1	0	0
UROC1	131669	broad.mit.edu	37	3	126226858	126226858	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:126226858G>A	uc003eiz.1	-	5	524	c.492C>T	c.(490-492)CTC>CTT	p.L164L	UROC1_uc010hsi.1_Silent_p.L164L	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	164					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		TGCTGGGAAAGAGGCCAAGTG	0.597													5	72					0	0	1	0	0
UROC1	131669	broad.mit.edu	37	3	126227301	126227301	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:126227301C>T	uc003eiz.1	-	4	401	c.369G>A	c.(367-369)GTG>GTA	p.V123V	UROC1_uc010hsi.1_Silent_p.V123V	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	123					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		CTCCATAGGTCACCAGCTCCT	0.602													4	21					0	0	1	0	0
PLXNA1	5361	broad.mit.edu	37	3	126748898	126748898	+	Silent	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:126748898G>C	uc003ejg.2	+	27	4987	c.4983G>C	c.(4981-4983)CTG>CTC	p.L1661L	PLXNA1_uc003ejh.2_Silent_p.L329L	NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1684	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CACGGCTACTGGCCACCAAGG	0.637													5	51					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	126915875	126915875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:126915875G>A	uc003eji.1	+	2	587	c.347G>A	c.(346-348)GGA>GAA	p.G116E						RecName: Full=Putative uncharacterized protein C3orf56;																		CCCCTCATAGGAAGTCCGTAT	0.587													31	159					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	126915913	126915913	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:126915913C>T	uc003eji.1	+	2	625	c.385C>T	c.(385-387)CCT>TCT	p.P129S						RecName: Full=Putative uncharacterized protein C3orf56;																		CAACCTATTTCCTTTCCCCAT	0.607													30	165					0	0	1	0	0
TPRA1	131601	broad.mit.edu	37	3	127298661	127298661	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:127298661G>A	uc003ejl.2	-	2	471	c.180C>T	c.(178-180)TTC>TTT	p.F60F	TPRA1_uc003ejm.2_RNA|TPRA1_uc003ejo.2_Silent_p.F60F|TPRA1_uc010hsk.2_Silent_p.F60F|TPRA1_uc003ejn.2_Silent_p.F60F	NM_016372	NP_057456	Q86W33	TPRA1_HUMAN	G protein-coupled receptor 175 isoform 1	60	Helical; Name=1; (Potential).				aging|lipid metabolic process	integral to membrane	G-protein coupled receptor activity				0						TCCAGAGCAGGAAGATGAGGA	0.537													4	38					0	0	1	0	0
MCM2	4171	broad.mit.edu	37	3	127334785	127334785	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:127334785G>A	uc003ejp.2	+	9	1566	c.1509G>A	c.(1507-1509)GAG>GAA	p.E503E	MCM2_uc011bkm.1_Silent_p.E373E|MCM2_uc010hsl.2_RNA|MCM2_uc011bkn.1_Silent_p.E456E	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	503	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						TCGGAGGGGAGCCCAAAAACC	0.527													5	95					0	0	1	0	0
MCM2	4171	broad.mit.edu	37	3	127336826	127336826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:127336826C>T	uc003ejp.2	+	12	1972	c.1915C>T	c.(1915-1917)CCC>TCC	p.P639S	MCM2_uc011bkm.1_Missense_Mutation_p.P509S|MCM2_uc010hsl.2_Intron|MCM2_uc011bkn.1_Missense_Mutation_p.P592S	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	639	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						GCGCTACGACCCCTCGCTGAC	0.597													4	22					0	0	1	0	0
KBTBD12	166348	broad.mit.edu	37	3	127702981	127702981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:127702981C>T	uc010hsr.2	+	5	1735	c.1732C>T	c.(1732-1734)CCA>TCA	p.P578S	KBTBD12_uc003ejy.3_Missense_Mutation_p.P185S|KBTBD12_uc010hsq.2_RNA|KBTBD12_uc003eka.3_Missense_Mutation_p.P153S	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	578	Kelch 4.									ovary(1)	1						GGAACTGGACCCATGGGAAAA	0.458													7	90					0	0	1	0	0
EEFSEC	60678	broad.mit.edu	37	3	127965823	127965823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:127965823G>A	uc003eki.2	+	2	499	c.461G>A	c.(460-462)GGA>GAA	p.G154E	EEFSEC_uc003ekj.2_Missense_Mutation_p.G154E	NM_021937	NP_068756	P57772	SELB_HUMAN	eukaryotic elongation factor,	154						cytoplasm|nucleus	GTP binding|GTPase activity|translation elongation factor activity			ovary(1)	1						TTACCTGAAGGAAAGAGACAG	0.478													13	145					0	0	1	0	0
EEFSEC	60678	broad.mit.edu	37	3	127983489	127983489	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:127983489G>A	uc003eki.2	+	4	689	c.651G>A	c.(649-651)ACG>ACA	p.T217T	EEFSEC_uc003ekj.2_Intron	NM_021937	NP_068756	P57772	SELB_HUMAN	eukaryotic elongation factor,	217						cytoplasm|nucleus	GTP binding|GTPase activity|translation elongation factor activity			ovary(1)	1						CCATCCCAACGAGAGATCCCT	0.562													10	146					0	0	1	0	0
EEFSEC	60678	broad.mit.edu	37	3	128060436	128060436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:128060436G>A	uc003eki.2	+	5	1185	c.1147G>A	c.(1147-1149)GAT>AAT	p.D383N	EEFSEC_uc003ekj.2_Missense_Mutation_p.D328N	NM_021937	NP_068756	P57772	SELB_HUMAN	eukaryotic elongation factor,	383						cytoplasm|nucleus	GTP binding|GTPase activity|translation elongation factor activity			ovary(1)	1						CCTGTCCAAGGATTTGACACC	0.532													5	38					0	0	1	0	0
DNAJB8	165721	broad.mit.edu	37	3	128181482	128181482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:128181482C>T	uc003ekk.1	-	3	2268	c.607G>A	c.(607-609)GGG>AGG	p.G203R	uc003ekl.1_5'Flank	NM_153330	NP_699161	Q8NHS0	DNJB8_HUMAN	DnaJ homolog, subfamily B, member 8	203					protein folding		heat shock protein binding|unfolded protein binding				0				GBM - Glioblastoma multiforme(114;0.177)		CGCTCCTGCCCGTTCTCCACG	0.612													4	63					0	0	1	0	0
DNAJB8	165721	broad.mit.edu	37	3	128181674	128181674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:128181674C>T	uc003ekk.1	-	3	2076	c.415G>A	c.(415-417)GGA>AGA	p.G139R	uc003ekl.1_5'Flank	NM_153330	NP_699161	Q8NHS0	DNJB8_HUMAN	DnaJ homolog, subfamily B, member 8	139					protein folding		heat shock protein binding|unfolded protein binding				0				GBM - Glioblastoma multiforme(114;0.177)		GGAAATTCTCCAAAGCCTGCC	0.617													9	26					0	0	1	0	0
DNAJB8	165721	broad.mit.edu	37	3	128181764	128181764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:128181764G>A	uc003ekk.1	-	3	1986	c.325C>T	c.(325-327)CCT>TCT	p.P109S	uc003ekl.1_5'Flank	NM_153330	NP_699161	Q8NHS0	DNJB8_HUMAN	DnaJ homolog, subfamily B, member 8	109					protein folding		heat shock protein binding|unfolded protein binding				0				GBM - Glioblastoma multiforme(114;0.177)		AAGGAGAAAGGGTCCAGGCCA	0.612													4	40					0	0	1	0	0
CCDC48	79825	broad.mit.edu	37	3	128757682	128757682	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:128757682G>A	uc011bkt.1	+	7	1599	c.1599G>A	c.(1597-1599)TCG>TCA	p.S533S		NM_024768	NP_079044	Q9HA90	CCD48_HUMAN	coiled-coil domain containing 48	533	Potential.										0						AGAACATATCGAAAAGAGCCC	0.552													9	74					0	0	1	0	0
IFT122	55764	broad.mit.edu	37	3	129238473	129238473	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:129238473C>T	uc003emm.2	+	29	3740	c.3534C>T	c.(3532-3534)CGC>CGT	p.R1178R	IFT122_uc003eml.2_Silent_p.R1229R|IFT122_uc003emn.2_Silent_p.R1119R|IFT122_uc003emo.2_Silent_p.R1068R|IFT122_uc003emp.2_Silent_p.R1028R|IFT122_uc010htc.2_Silent_p.R1171R|IFT122_uc011bky.1_Silent_p.R969R|IFT122_uc003emq.2_Silent_p.R1018R|IFT122_uc003emr.2_Silent_p.R931R|IFT122_uc011bla.1_Silent_p.R952R|IFT122_uc010hte.2_Silent_p.R504R|IFT122_uc003ems.2_Silent_p.R560R	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	1178					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						CCATGAGCCGCCGGGATGTCC	0.642													8	47					0	0	1	0	0
RHO	6010	broad.mit.edu	37	3	129247649	129247649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:129247649G>A	uc003emt.2	+	1	168	c.73G>A	c.(73-75)GAG>AAG	p.E25K		NM_000539	NP_000530	P08100	OPSD_HUMAN	rhodopsin	25	Extracellular.				protein-chromophore linkage|rhodopsin mediated signaling pathway	Golgi apparatus|integral to plasma membrane|photoreceptor inner segment membrane|photoreceptor outer segment membrane	G-protein coupled receptor activity|metal ion binding|photoreceptor activity|protein binding				0		all_neural(597;0.0227)|Myeloproliferative disorder(1037;0.0255)|Prostate(884;0.183)		GBM - Glioblastoma multiforme(114;2.58e-05)|Lung(219;0.0234)	Halothane(DB01159)	CAGCCCCTTCGAGTACCCACA	0.587													12	75					0	0	1	0	0
PLXND1	23129	broad.mit.edu	37	3	129278493	129278493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:129278493G>A	uc003emx.2	-	32	5367	c.5267C>T	c.(5266-5268)CCC>CTC	p.P1756L	PLXND1_uc003emw.2_5'Flank|PLXND1_uc011blb.1_Missense_Mutation_p.P424L	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1756	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						TAGGGTGTCGGGGTCGGAGAT	0.532													7	112					0	0	1	0	0
PLXND1	23129	broad.mit.edu	37	3	129288798	129288798	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:129288798G>A	uc003emx.2	-	20	3853	c.3753C>T	c.(3751-3753)ATC>ATT	p.I1251I	PLXND1_uc011blb.1_5'Flank	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1251	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						TCCCTACCTGGATCTGTGCAG	0.408													6	33					0	0	1	0	0
PLXND1	23129	broad.mit.edu	37	3	129293293	129293293	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:129293293G>A	uc003emx.2	-	12	2671	c.2571C>T	c.(2569-2571)TCC>TCT	p.S857S		NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	857	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						CCAGGCACTGGGAACAGTCGG	0.687													5	28					0	0	1	0	0
TMCC1	23023	broad.mit.edu	37	3	129389268	129389268	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:129389268G>A	uc003emz.3	-	5	1917	c.1416C>T	c.(1414-1416)ACC>ACT	p.T472T	TMCC1_uc003emy.3_Silent_p.T148T|TMCC1_uc011blc.1_Silent_p.T293T|TMCC1_uc010htg.2_Silent_p.T358T	NM_001017395	NP_001017395	O94876	TMCC1_HUMAN	transmembrane and coiled-coil domain family 1	472	Potential.					integral to membrane				skin(1)	1						GTCTGGCCTGGGTTTCCCGGA	0.478													4	66					0	0	1	0	0
TMCC1	23023	broad.mit.edu	37	3	129389742	129389742	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:129389742G>A	uc003emz.3	-	5	1443	c.942C>T	c.(940-942)ATC>ATT	p.I314I	TMCC1_uc003emy.3_5'UTR|TMCC1_uc011blc.1_Silent_p.I135I|TMCC1_uc010htg.2_Silent_p.I200I	NM_001017395	NP_001017395	O94876	TMCC1_HUMAN	transmembrane and coiled-coil domain family 1	314						integral to membrane				skin(1)	1						GCTGCCGGGGGATCCCATTCT	0.507													10	64					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130283894	130283894	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:130283894G>A	uc010htl.2	+	3	749	c.718G>A	c.(718-720)GGA>AGA	p.G240R		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	240	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GTCAATCAATGGAAGTGAGGA	0.428													14	103					0	0	1	0	0
PIK3R4	30849	broad.mit.edu	37	3	130424436	130424436	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:130424436A>C	uc003enj.2	-	12	3482	c.2901T>G	c.(2899-2901)AAT>AAG	p.N967K		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	phosphoinositide-3-kinase, regulatory subunit 4	967					fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|breast(2)|skin(2)|stomach(1)|central_nervous_system(1)|kidney(1)	12						CCCATTCAGCATTTTCCATCA	0.413													5	32					0	0	1	0	0
ATP2C1	27032	broad.mit.edu	37	3	130714935	130714935	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:130714935C>T	uc003enl.2	+	23	2328	c.2106C>T	c.(2104-2106)TTC>TTT	p.F702F	ATP2C1_uc011blg.1_Silent_p.F736F|ATP2C1_uc011blh.1_Silent_p.F697F|ATP2C1_uc011bli.1_Silent_p.F736F|ATP2C1_uc003enk.2_Silent_p.F686F|ATP2C1_uc003enm.2_Silent_p.F702F|ATP2C1_uc003enn.2_Silent_p.F686F|ATP2C1_uc003eno.2_Silent_p.F702F|ATP2C1_uc003enp.2_Silent_p.F702F|ATP2C1_uc003enq.2_Silent_p.F702F|ATP2C1_uc003enr.2_Silent_p.F702F|ATP2C1_uc003ens.2_Silent_p.F702F|ATP2C1_uc003ent.2_Silent_p.F702F|ATP2C1_uc003enu.2_Silent_p.F380F	NM_014382	NP_055197	P98194	AT2C1_HUMAN	calcium-transporting ATPase 2C1 isoform 1a	702	Helical; Name=5; (By similarity).				actin cytoskeleton reorganization|ATP biosynthetic process|calcium-dependent cell-cell adhesion|cellular calcium ion homeostasis|cellular manganese ion homeostasis|epidermis development|Golgi calcium ion homeostasis|Golgi calcium ion transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi apparatus|Golgi membrane|integral to membrane|trans-Golgi network	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|manganese ion binding|manganese-transporting ATPase activity|metal ion binding|signal transducer activity			skin(1)	1					Arsenic trioxide(DB01169)|Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Miconazole(DB01110)|Sevoflurane(DB01236)	TTAAAAATTTCGTTAGATTCC	0.308									Hailey-Hailey_disease				14	75					0	0	1	0	0
ACPP	55	broad.mit.edu	37	3	132071590	132071590	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:132071590G>A	uc010htp.2	+	9	981	c.891G>A	c.(889-891)CAG>CAA	p.Q297Q	ACPP_uc003eon.3_Silent_p.Q264Q|ACPP_uc003eop.3_Silent_p.Q297Q	NM_001099	NP_001090	P15309	PPAP_HUMAN	acid phosphatase, prostate short isoform	297						extracellular region|lysosomal membrane	5'-nucleotidase activity|acid phosphatase activity			ovary(1)	1						GTGGCCTACAGATGGCGCTAG	0.433													6	23					0	0	1	0	0
BFSP2	8419	broad.mit.edu	37	3	133119369	133119369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:133119369G>A	uc003epn.1	+	1	580	c.442G>A	c.(442-444)GGA>AGA	p.G148R		NM_003571	NP_003562	Q13515	BFSP2_HUMAN	phakinin	148	Rod.				response to stimulus|visual perception	cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens				0						CACACGCTCGGGAAACTGGGG	0.612													3	15					0	0	1	0	0
TF	7018	broad.mit.edu	37	3	133474262	133474262	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:133474262C>T	uc003epu.1	+	10	2286	c.558C>T	c.(556-558)TTC>TTT	p.F186F	TF_uc011bls.1_Silent_p.F186F|TF_uc011blt.1_Silent_p.F59F|TF_uc003epw.1_Intron|TF_uc003epv.1_Silent_p.F186F	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	186	Transferrin-like 1.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	GGACGGACTTCCCCCAGCTGT	0.572													8	53					0	0	1	0	0
RAB6B	51560	broad.mit.edu	37	3	133547639	133547639	+	Missense_Mutation	SNP	G	A	A	rs149351332	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:133547639G>A	uc003epy.2	-	8	1001	c.620C>T	c.(619-621)TCC>TTC	p.S207F	RAB6B_uc011blu.1_Missense_Mutation_p.S194F	NM_016577	NP_057661	Q9NRW1	RAB6B_HUMAN	RAB6B, member RAS oncogene family	207					protein transport|retrograde vesicle-mediated transport, Golgi to ER|small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle|Golgi membrane	GTP binding|GTPase activity|protein binding			pancreas(1)	1						GCATTAGCAGGAGCAGCCGCC	0.587													44	239					0	0	1	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133667387	133667387	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:133667387G>A	uc003eqa.3	-	8	1372	c.1098C>T	c.(1096-1098)TTC>TTT	p.F366F	SLCO2A1_uc003eqb.3_Silent_p.F290F|SLCO2A1_uc011blv.1_Silent_p.F185F	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	366	Helical; Name=8; (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						CACCAATGAGGAAGTTGGCAT	0.622													9	107					0	0	1	0	0
KY	339855	broad.mit.edu	37	3	134366291	134366291	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:134366291C>T	uc010hty.2	-	2	247	c.185G>A	c.(184-186)GGA>GAA	p.G62E	KY_uc011blw.1_Missense_Mutation_p.G62E|KY_uc011blx.1_Missense_Mutation_p.G62E|KY_uc003eqs.1_Missense_Mutation_p.G103E	NM_178554	NP_848649	Q8NBH2	KY_HUMAN	kyphoscoliosis peptidase	62						cytoskeleton|Z disc	peptidase activity			ovary(2)	2						AAAGTCATTTCCTTCTAATTT	0.378													3	19					0	0	1	0	0
KY	339855	broad.mit.edu	37	3	134369687	134369687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:134369687G>A	uc010hty.2	-	1	178	c.116C>T	c.(115-117)TCG>TTG	p.S39L	KY_uc011blw.1_Missense_Mutation_p.S39L|KY_uc011blx.1_Missense_Mutation_p.S39L|KY_uc003eqs.1_Intron	NM_178554	NP_848649	Q8NBH2	KY_HUMAN	kyphoscoliosis peptidase	39						cytoskeleton|Z disc	peptidase activity			ovary(2)	2						CTGCAGCAGCGAGCTCGGGTT	0.701													4	24					0	0	1	0	0
EPHB1	2047	broad.mit.edu	37	3	134670819	134670820	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:134670819_134670820GG>AA	uc003eqt.2	+	3	950_951	c.730_731GG>AA	c.(730-732)GGG>AAG	p.G244K	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Intron	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	244	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						CAACGGGGATGGGGAATGGATG	0.579													8	117					0	0	1	0	0
ARMC8	25852	broad.mit.edu	37	3	138003356	138003356	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:138003356C>T	uc003esa.1	+	20	2134	c.1767C>T	c.(1765-1767)ATC>ATT	p.I589I	TXNDC6_uc003esd.1_Intron|TXNDC6_uc010huf.1_Intron|TXNDC6_uc003ese.1_Intron|ARMC8_uc011bmf.1_Silent_p.I572I|ARMC8_uc011bmg.1_Silent_p.I536I|ARMC8_uc011bmh.1_Silent_p.I530I|ARMC8_uc003esb.1_Silent_p.I561I|ARMC8_uc003esc.1_Silent_p.I361I|ARMC8_uc003esf.1_Silent_p.I172I	NM_015396	NP_056211	Q8IUR7	ARMC8_HUMAN	armadillo repeat containing 8 isoform 2	603	ARM 13.						binding				0						TACAGAAAATCAAGTATTACA	0.383													11	133					0	0	1	0	0
TXNDC6	347736	broad.mit.edu	37	3	138024932	138024933	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:138024932_138024933CC>TT	uc003esg.2	-	8	577_578	c.549_550GG>AA	c.(547-552)CAGGAA>CAAAAA	p.E184K	TXNDC6_uc003esd.1_RNA|TXNDC6_uc010huf.1_Missense_Mutation_p.E99K|TXNDC6_uc003ese.1_Missense_Mutation_p.E123K	NM_178130	NP_835231	Q86XW9	TXND6_HUMAN	thioredoxin domain containing 6	184	NDK.				cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	cytoplasm|cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			breast(3)|ovary(1)|pancreas(1)	5						AACCCAGCTTCCTGAATCTGTA	0.351													9	193					0	0	1	0	0
CEP70	80321	broad.mit.edu	37	3	138213864	138213864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:138213864G>A	uc003esl.2	-	18	1985	c.1787C>T	c.(1786-1788)TCA>TTA	p.S596L	CEP70_uc011bmk.1_Missense_Mutation_p.S576L|CEP70_uc011bml.1_Missense_Mutation_p.S578L|CEP70_uc011bmm.1_Missense_Mutation_p.S444L	NM_024491	NP_077817	Q8NHQ1	CEP70_HUMAN	centrosomal protein 70 kDa	596					G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding			skin(1)	1						TTTTCAGTATGAAAGTACTTT	0.264													13	134					0	0	1	0	0
PRR23B	389151	broad.mit.edu	37	3	138739086	138739086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:138739086C>T	uc003esy.1	-	1	683	c.418G>A	c.(418-420)GAA>AAA	p.E140K		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	140										breast(1)	1						GCGCAGAATTCCAGCTCGACG	0.662													5	37					0	0	1	0	0
CLSTN2	64084	broad.mit.edu	37	3	140122567	140122567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:140122567G>A	uc003etn.2	+	3	519	c.329G>A	c.(328-330)AGC>AAC	p.S110N	CLSTN2_uc003etm.2_Missense_Mutation_p.S110N	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	110	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						CGTGCCAAGAGCCCCATTGAC	0.562										HNSCC(16;0.037)			8	99					0	0	1	0	0
TRIM42	287015	broad.mit.edu	37	3	140406788	140406788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:140406788G>A	uc003eto.1	+	3	1455	c.1264G>A	c.(1264-1266)GAG>AAG	p.E422K		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	422						intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						GAAAGTGAACGAGATGGATGG	0.478													4	12					0	0	1	0	0
PLS1	5357	broad.mit.edu	37	3	142403006	142403006	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:142403006G>A	uc010huv.2	+	7	897	c.738G>A	c.(736-738)AGG>AGA	p.R246R	PLS1_uc003euz.2_Silent_p.R246R|PLS1_uc003eva.2_Silent_p.R246R	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	246	Actin-binding 1.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						AGATTTCCAGGAATGAAGGTA	0.398													5	67					0	0	1	0	0
PLS1	5357	broad.mit.edu	37	3	142405169	142405169	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:142405169A>G	uc010huv.2	+	9	1091	c.932A>G	c.(931-933)AAA>AGA	p.K311R	PLS1_uc003euz.2_Missense_Mutation_p.K311R|PLS1_uc003eva.2_Missense_Mutation_p.K311R	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	311	Actin-binding 1.|CH 2.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						ATTGCCCCTAAAGGTGGGGAA	0.303													3	47					0	0	1	0	0
TRPC1	7220	broad.mit.edu	37	3	142509987	142509987	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:142509987T>C	uc003evc.2	+	8	1560	c.1424T>C	c.(1423-1425)GTT>GCT	p.V475A	TRPC1_uc003evb.2_Missense_Mutation_p.V441A|TRPC1_uc011bni.1_Missense_Mutation_p.V42A	NM_003304	NP_003295	P48995	TRPC1_HUMAN	transient receptor potential cation channel,	475	Helical; (Potential).				axon guidance|cytosolic calcium ion homeostasis|positive regulation of release of sequestered calcium ion into cytosol|response to calcium ion	cytosol|integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						CTCAAAGTGGTTGCTCACAAC	0.348													2	3					0	0	1	0	0
SLC9A9	285195	broad.mit.edu	37	3	143186016	143186016	+	Silent	SNP	G	A	A	rs141105678		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:143186016G>A	uc003evn.2	-	12	1514	c.1332C>T	c.(1330-1332)ATC>ATT	p.I444I		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	444	Helical; (Potential).				regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						AGGCAAATGCGATCGCTCCTC	0.428													4	15					0	0	1	0	0
CPA3	1359	broad.mit.edu	37	3	148614415	148614415	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:148614415C>G	uc003ewm.2	+	11	1227	c.1175C>G	c.(1174-1176)TCC>TGC	p.S392C		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	392					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			CTTCCAGAATCCCGGATAAAG	0.438													3	41					0	0	1	0	0
CPA3	1359	broad.mit.edu	37	3	148614417	148614417	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:148614417C>T	uc003ewm.2	+	11	1229	c.1177C>T	c.(1177-1179)CGG>TGG	p.R393W		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	393					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			TCCAGAATCCCGGATAAAGCC	0.433													4	41					0	0	1	0	0
CP	1356	broad.mit.edu	37	3	148919985	148919985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:148919985C>T	uc003ewy.3	-	7	1505	c.1252G>A	c.(1252-1254)GGC>AGC	p.G418S	CP_uc011bnr.1_RNA|CP_uc003ewx.3_Missense_Mutation_p.G199S|CP_uc003ewz.2_Missense_Mutation_p.G418S|CP_uc010hvf.1_Missense_Mutation_p.G144S	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	418	Plastocyanin-like 3.|F5/8 type A 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	TTATAAGAGCCTCCAATTCTT	0.453													4	58					0	0	1	0	0
TSC22D2	9819	broad.mit.edu	37	3	150128657	150128657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:150128657C>T	uc003exv.2	+	1	1870	c.1520C>T	c.(1519-1521)CCA>CTA	p.P507L	TSC22D2_uc003exw.2_RNA|TSC22D2_uc003exx.2_Missense_Mutation_p.P507L	NM_014779	NP_055594	O75157	T22D2_HUMAN	TSC22 domain family, member 2	507							sequence-specific DNA binding transcription factor activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			CCCGGAGTTCCAAACGTGCCT	0.662													4	30					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	150877785	150877785	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:150877785G>A	uc003eyp.2	+	7	1042	c.1004G>A	c.(1003-1005)GGC>GAC	p.G335D	MED12L_uc011bnz.1_Intron|MED12L_uc003eyn.2_Missense_Mutation_p.G335D|MED12L_uc003eyo.2_Missense_Mutation_p.G335D	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	335					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CCCAGCCCTGGCCCCCCCGGC	0.582													9	110					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	151107898	151107898	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:151107898C>T	uc003eyp.2	+	36	5516	c.5478C>T	c.(5476-5478)TTC>TTT	p.F1826F	MED12L_uc011bnz.1_Silent_p.F1686F	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1826					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CCGGCTTTTTCCTTCAGAACC	0.493													4	58					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151155194	151155194	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:151155194A>C	uc011bod.1	-	6	7155	c.7155T>G	c.(7153-7155)AGT>AGG	p.S2385R	IGSF10_uc011bob.1_Missense_Mutation_p.S412R|IGSF10_uc011boc.1_Missense_Mutation_p.S364R	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2385	Ig-like C2-type 10.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GATACTGATAACTTTGTGGTC	0.403													6	52					0	0	1	0	0
P2RY1	5028	broad.mit.edu	37	3	152554533	152554533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:152554533C>T	uc003ezq.2	+	1	1798	c.962C>T	c.(961-963)CCC>CTC	p.P321L		NM_002563	NP_002554	P47900	P2RY1_HUMAN	purinergic receptor P2Y1	321	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|platelet activation	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0628)|Lung(72;0.11)			TGTGTGGACCCCATTCTCTAT	0.463													5	69					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155203163	155203163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:155203163C>T	uc011bok.1	-	22	3257	c.2980G>A	c.(2980-2982)GGA>AGA	p.G994R	PLCH1_uc011boj.1_Missense_Mutation_p.G994R|PLCH1_uc011bol.1_Missense_Mutation_p.G956R	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	994					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TTTTCTTTTCCTTCAATGTCT	0.448													3	37					0	0	1	0	0
LXN	56925	broad.mit.edu	37	3	158390185	158390185	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:158390185G>T	uc003fch.2	-	1	298	c.83C>A	c.(82-84)CCG>CAG	p.P28Q	GFM1_uc003fcd.2_Intron|GFM1_uc003fce.2_Intron|GFM1_uc003fcf.2_Intron|GFM1_uc003fcg.2_Intron|LXN_uc011bov.1_Missense_Mutation_p.P28Q	NM_020169	NP_064554	Q9BS40	LXN_HUMAN	latexin	28						cytoplasm	metalloendopeptidase inhibitor activity|protein binding				0			Lung(72;0.00309)|LUSC - Lung squamous cell carcinoma(72;0.0043)			CACCCTGTGCGGGGTCCCCTG	0.592											OREG0015899	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	94					1	1	1	1	0
PPM1L	151742	broad.mit.edu	37	3	160786678	160786678	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:160786678G>A	uc003fdr.2	+	4	917	c.816G>A	c.(814-816)CTG>CTA	p.L272L	PPM1L_uc003fds.2_Silent_p.L93L|PPM1L_uc003fdt.2_Silent_p.L145L|PPM1L_uc010hwf.2_RNA	NM_139245	NP_640338	Q5SGD2	PPM1L_HUMAN	protein phosphatase 1 (formerly 2C)-like	272	Cytoplasmic (Potential).|PP2C-like.				protein dephosphorylation|sphingolipid metabolic process	endoplasmic reticulum membrane|integral to membrane|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(1)	1			Lung(72;0.00149)|LUSC - Lung squamous cell carcinoma(72;0.00216)			ATTATCCGCTGAAAAATCTCA	0.532													4	37					0	0	1	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907340	164907340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:164907340C>T	uc003fej.3	-	2	1723	c.1279G>A	c.(1279-1281)GAT>AAT	p.D427N	SLITRK3_uc003fek.2_Missense_Mutation_p.D427N	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	427	LRR 7.|Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						TTCCAAAAATCAGAACGGTAT	0.393										HNSCC(40;0.11)			4	25					0	0	1	0	0
ZBBX	79740	broad.mit.edu	37	3	167023635	167023635	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:167023635C>T	uc003fep.2	-	17	1844	c.1521G>A	c.(1519-1521)AAG>AAA	p.K507K	ZBBX_uc011bpc.1_Silent_p.K507K|ZBBX_uc003feq.2_Silent_p.K478K	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	507						intracellular	zinc ion binding			ovary(2)	2						TATTTTTCTCCTTTAAATTTC	0.338													3	17					0	0	1	0	0
ZBBX	79740	broad.mit.edu	37	3	167035285	167035285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:167035285C>T	uc003fep.2	-	13	1407	c.1084G>A	c.(1084-1086)GAT>AAT	p.D362N	ZBBX_uc011bpc.1_Missense_Mutation_p.D362N|ZBBX_uc003feq.2_Missense_Mutation_p.D333N	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	362						intracellular	zinc ion binding			ovary(2)	2						CCATCACTATCTTCATCGTTT	0.333													3	4					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167218000	167218000	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:167218000A>T	uc003fev.1	-	14	2222	c.1916T>A	c.(1915-1917)TTT>TAT	p.F639Y	WDR49_uc003feu.1_Missense_Mutation_p.F464Y|WDR49_uc011bpd.1_Missense_Mutation_p.F604Y|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	639										large_intestine(1)|ovary(1)|skin(1)	3						TTCTTTCCTAAAGTATTTCTC	0.438													13	69					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167293760	167293760	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:167293760C>T	uc003fev.1	-	4	738	c.432G>A	c.(430-432)GTG>GTA	p.V144V	WDR49_uc003feu.1_5'Flank|WDR49_uc011bpd.1_Silent_p.V197V|WDR49_uc003few.1_Silent_p.V485V	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	144										large_intestine(1)|ovary(1)|skin(1)	3						CATGGCTTTTCACCCTCTTGC	0.403													8	41					0	0	1	0	0
MECOM	2122	broad.mit.edu	37	3	169099128	169099128	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:169099128G>A	uc011bpj.1	-	2	625	c.222C>T	c.(220-222)ATC>ATT	p.I74I	MECOM_uc003ffl.2_Silent_p.I46I|MECOM_uc011bpk.1_Intron|MECOM_uc010hwn.2_Silent_p.I74I|MECOM_uc011bpl.1_Silent_p.I74I	NM_004991	NP_004982	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform c	Error:Variant_position_missing_in_Q03112_after_alignment					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						CAGGAATGGGGATATCATCAG	0.473													4	13					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169644566	169644566	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:169644566C>T	uc003fgd.2	+	6	783	c.516C>T	c.(514-516)CAC>CAT	p.H172H	SAMD7_uc003fge.2_Silent_p.H172H|SAMD7_uc011bpo.1_Silent_p.H73H	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	172										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			CTGCACCACACTTTGAGGAGA	0.522													4	64					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169644652	169644652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:169644652C>T	uc003fgd.2	+	6	869	c.602C>T	c.(601-603)TCC>TTC	p.S201F	SAMD7_uc003fge.2_Missense_Mutation_p.S201F|SAMD7_uc011bpo.1_Missense_Mutation_p.S102F	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	201										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GCTGAGAGTTCCAAAAGTCAA	0.463													4	30					0	0	1	0	0
LOC100128164	100128164	broad.mit.edu	37	3	169664007	169664007	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:169664007C>T	uc011bpp.1	-	2		c.3796G>A				NR_027622				Homo sapiens cDNA FLJ41016 fis, clone UTERU2018784.												0						CAGGGCTCATCCTAGTAAGTG	0.502													5	47					0	0	1	0	0
SKIL	6498	broad.mit.edu	37	3	170078770	170078770	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:170078770C>T	uc003fgu.2	+	2	1363	c.651C>T	c.(649-651)TCC>TCT	p.S217S	SKIL_uc011bps.1_Silent_p.S197S|SKIL_uc003fgv.2_Silent_p.S217S|SKIL_uc003fgw.2_Silent_p.S217S	NM_005414	NP_005405	P12757	SKIL_HUMAN	SKI-like isoform 1	217					cell cycle arrest|negative regulation of cell differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of axonogenesis|protein heterotrimerization|protein homotrimerization|regulation of apoptosis|regulation of apoptosis|response to antibiotic|response to growth factor stimulus|skeletal muscle tissue development	cytoplasm|PML body	chromatin binding|nucleotide binding|protein complex binding|protein domain specific binding|SMAD binding|transcription corepressor activity|transcription repressor activity			ovary(2)|skin(1)	3	all_cancers(22;7.13e-23)|all_epithelial(15;9.95e-28)|all_lung(20;1.23e-16)|Lung NSC(18;5.15e-16)|Ovarian(172;0.000337)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			ATGCCCCATCCTGTGGGCTGA	0.403													6	62					0	0	1	0	0
SLC7A14	57709	broad.mit.edu	37	3	170198340	170198340	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:170198340G>A	uc003fgz.2	-	7	2047	c.1731C>T	c.(1729-1731)TTC>TTT	p.F577F	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	577	Helical; (Potential).					integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			AGCAGAAGATGAACATGAGGA	0.562													4	33					0	0	1	0	0
TNFSF10	8743	broad.mit.edu	37	3	172224571	172224571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:172224571G>A	uc003fid.2	-	5	652	c.557C>T	c.(556-558)TCC>TTC	p.S186F	TNFSF10_uc003fie.2_3'UTR	NM_003810	NP_003801	P50591	TNF10_HUMAN	tumor necrosis factor (ligand) superfamily,	186	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of apoptosis by extracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane|soluble fraction	cytokine activity|metal ion binding|tumor necrosis factor receptor binding			skin(4)|lung(1)	5	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.67e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			GTATGTTTGGGAATAGATGTA	0.383													4	61					0	0	1	0	0
SPATA16	83893	broad.mit.edu	37	3	172835108	172835108	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:172835108C>T	uc003fin.3	-	2	572	c.414G>A	c.(412-414)GAG>GAA	p.E138E		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	138					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			ACTCTACAAACTCATAGCGAA	0.428													4	25					0	0	1	0	0
ATP11B	23200	broad.mit.edu	37	3	182584161	182584161	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:182584161C>T	uc003flb.2	+	14	1806	c.1549C>T	c.(1549-1551)CTG>TTG	p.L517L	ATP11B_uc003flc.2_Silent_p.L101L	NM_014616	NP_055431	Q9Y2G3	AT11B_HUMAN	ATPase, class VI, type 11B	517	Cytoplasmic (Potential).				aminophospholipid transport|ATP biosynthetic process	integral to membrane|nuclear inner membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;1.2e-42)|Epithelial(37;2.77e-36)|LUSC - Lung squamous cell carcinoma(7;7.58e-24)|Lung(8;4.66e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.35e-20)			GCAATCCAACCTGGCACCATC	0.443													3	19					0	0	1	0	0
LAMP3	27074	broad.mit.edu	37	3	182870195	182870195	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:182870195G>A	uc003flh.3	-	3	1080	c.856C>T	c.(856-858)CAG>TAG	p.Q286*		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	286	Lumenal (Potential).				cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			AATCCGCCCTGAAAATTCAAC	0.502													12	150					0	0	1	0	0
MCF2L2	23101	broad.mit.edu	37	3	182913012	182913012	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:182913012C>T	uc003fli.1	-	26	3006	c.2916G>A	c.(2914-2916)ACG>ACA	p.T972T		NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	972					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			GTACTCACCTCGTGCTCATTT	0.313													13	55					0	0	1	0	0
KLHL6	89857	broad.mit.edu	37	3	183225903	183225904	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:183225903_183225904GG>AC	uc003flr.2	-	3	910_911	c.852_853CC>GT	c.(850-855)TGCCCA>TGGTCA	p.284_285CP>WS	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_Missense_Mutation_p.282_283CP>WS	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	284_285										haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			AAGACCTCTGGGCACTGCCTGA	0.53													9	28					0	0	1	0	0
YEATS2	55689	broad.mit.edu	37	3	183439712	183439712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:183439712C>T	uc003fly.2	+	5	520	c.325C>T	c.(325-327)CAT>TAT	p.H109Y		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	109					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			GGTTTTTAATCATCCTGCTAT	0.348													7	83					0	0	1	0	0
YEATS2	55689	broad.mit.edu	37	3	183472089	183472089	+	Silent	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:183472089T>G	uc003fly.2	+	11	1521	c.1326T>G	c.(1324-1326)GTT>GTG	p.V442V		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	442					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			AAAGTCAGGTTCCTAATCCTG	0.438													4	50					0	0	1	0	0
EIF4G1	1981	broad.mit.edu	37	3	184039405	184039405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:184039405C>T	uc003fnp.2	+	10	1231	c.1033C>T	c.(1033-1035)CTC>TTC	p.L345F	EIF4G1_uc003fno.1_Missense_Mutation_p.L286F|EIF4G1_uc010hxw.1_Missense_Mutation_p.L181F|EIF4G1_uc003fnt.2_Missense_Mutation_p.L56F|EIF4G1_uc003fnq.2_Missense_Mutation_p.L258F|EIF4G1_uc003fnr.2_Missense_Mutation_p.L181F|EIF4G1_uc010hxx.2_Missense_Mutation_p.L352F|EIF4G1_uc003fns.2_Missense_Mutation_p.L305F|EIF4G1_uc010hxy.2_Missense_Mutation_p.L352F|EIF4G1_uc003fnv.3_Missense_Mutation_p.L345F|EIF4G1_uc003fnu.3_Missense_Mutation_p.L345F|EIF4G1_uc003fnw.2_Missense_Mutation_p.L352F|EIF4G1_uc003fnx.2_Missense_Mutation_p.L149F|EIF4G1_uc003fny.3_Missense_Mutation_p.L149F	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	345					insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TTCCAGTCCTCTCCAGGCTCC	0.527													7	79					0	0	1	0	0
EPHB3	2049	broad.mit.edu	37	3	184298341	184298341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:184298341C>T	uc003foz.2	+	12	2761	c.2324C>T	c.(2323-2325)TCA>TTA	p.S775L		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	775	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			TGCAAAGTCTCAGACTTTGGC	0.592													9	75					0	0	1	0	0
C3orf70	285382	broad.mit.edu	37	3	184801295	184801295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:184801295G>A	uc003fpd.2	-	2	444	c.253C>T	c.(253-255)CCT>TCT	p.P85S		NM_001025266	NP_001020437	A6NLC5	CC070_HUMAN	hypothetical protein LOC285382	85											0						GGCCTGGCAGGAATCTCAGTG	0.473													5	72					0	0	1	0	0
MAP3K13	9175	broad.mit.edu	37	3	185169095	185169095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:185169095G>A	uc010hyf.2	+	8	1456	c.1190G>A	c.(1189-1191)CGA>CAA	p.R397Q	MAP3K13_uc011brt.1_Missense_Mutation_p.R190Q|MAP3K13_uc003fph.3_Missense_Mutation_p.R165Q|MAP3K13_uc011bru.1_Missense_Mutation_p.R253Q|MAP3K13_uc003fpi.2_Missense_Mutation_p.R397Q|MAP3K13_uc010hyg.2_Missense_Mutation_p.R87Q	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	397	Protein kinase.				activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			CCTCGAAACCGACCTTCTTTT	0.398													9	44					0	0	1	0	0
IGF2BP2	10644	broad.mit.edu	37	3	185407293	185407293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:185407293G>A	uc003fpo.2	-	6	606	c.527C>T	c.(526-528)TCC>TTC	p.S176F	IGF2BP2_uc010hyi.2_Missense_Mutation_p.S119F|IGF2BP2_uc010hyj.2_Missense_Mutation_p.S113F|IGF2BP2_uc010hyk.2_Missense_Mutation_p.S40F|IGF2BP2_uc010hyl.2_Missense_Mutation_p.S113F|IGF2BP2_uc003fpp.2_Missense_Mutation_p.S176F|IGF2BP2_uc003fpq.2_Missense_Mutation_p.S181F	NM_006548	NP_006539	Q9Y6M1	IF2B2_HUMAN	insulin-like growth factor 2 mRNA binding	176					anatomical structure morphogenesis|negative regulation of translation	cytoskeletal part|cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity				0	all_cancers(143;5.84e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			TTGCTCCCGGGAAGAGTGGTC	0.597													21	228					0	0	1	0	0
ETV5	2119	broad.mit.edu	37	3	185797717	185797717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:185797717G>A	uc003fpz.2	-	7	786	c.539C>T	c.(538-540)TCG>TTG	p.S180L	ETV5_uc003fpy.2_Missense_Mutation_p.S222L	NM_004454	NP_004445	P41161	ETV5_HUMAN	ets variant gene 5 (ets-related molecule)	180					cellular response to oxidative stress	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|skin(2)|breast(1)	5	all_cancers(143;4.06e-12)|Ovarian(172;0.0386)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.62e-24)			CTCTGGAAGCGAATGGGGGGC	0.617			T	TMPRSS2|SCL45A3	Prostate 								5	70					0	0	1	0	0
FETUB	26998	broad.mit.edu	37	3	186362666	186362666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:186362666C>T	uc010hyq.2	+	5	812	c.551C>T	c.(550-552)TCC>TTC	p.S184F	FETUB_uc011brz.1_Missense_Mutation_p.S36F|FETUB_uc003fqn.2_Missense_Mutation_p.S184F|FETUB_uc003fqo.2_Missense_Mutation_p.S79F|FETUB_uc010hyr.2_Missense_Mutation_p.S147F|FETUB_uc010hys.2_Missense_Mutation_p.S36F|FETUB_uc003fqp.3_Missense_Mutation_p.S119F	NM_014375	NP_055190	Q9UGM5	FETUB_HUMAN	fetuin B precursor	184	Cystatin fetuin-B-type 2.					extracellular space	cysteine-type endopeptidase inhibitor activity			ovary(1)|lung(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0479)		GAGAACACATCCAAGCAGTAT	0.498													4	23					0	0	1	0	0
BCL6	604	broad.mit.edu	37	3	187442854	187442854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:187442854G>A	uc003frp.3	-	9	2309	c.1852C>T	c.(1852-1854)CGT>TGT	p.R618C	BCL6_uc011bsf.1_Missense_Mutation_p.R562C|BCL6_uc010hza.2_Missense_Mutation_p.R516C|BCL6_uc003frq.1_Missense_Mutation_p.R618C	NM_001130845	NP_001124317	P41182	BCL6_HUMAN	B-cell lymphoma 6 protein isoform 1	618	C2H2-type 4.				negative regulation of B cell apoptosis|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|protein import into nucleus, translocation|regulation of germinal center formation|response to DNA damage stimulus	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|lung(2)|central_nervous_system(1)	5	all_cancers(143;9.45e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0141)		ACATGGGCACGGAGGTGGGCC	0.587			T|Mis	IG loci|ZNFN1A1|LCP1|PIM1|TFRC|MHC2TA|NACA|HSPCB|HSPCA|HIST1H4I|IL21R| POU2AF1|ARHH|EIF4A2|SFRS3	NHL|CLL								12	59					0	0	1	0	0
TP63	8626	broad.mit.edu	37	3	189526224	189526224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:189526224C>T	uc003fry.2	+	4	577	c.488C>T	c.(487-489)CCC>CTC	p.P163L	TP63_uc003frx.2_Missense_Mutation_p.P163L|TP63_uc003frz.2_Missense_Mutation_p.P163L|TP63_uc010hzc.1_Missense_Mutation_p.P163L|TP63_uc003fsa.2_Missense_Mutation_p.P69L|TP63_uc003fsb.2_Missense_Mutation_p.P69L|TP63_uc003fsc.2_Missense_Mutation_p.P69L|TP63_uc003fsd.2_Missense_Mutation_p.P69L|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Missense_Mutation_p.P44L	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	163					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		TCTCCATCACCCGCCATCCCC	0.632									Hay-Wells_syndrome	HNSCC(45;0.13)			4	30					0	0	1	0	0
ATP13A5	344905	broad.mit.edu	37	3	193036848	193036848	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:193036848G>A	uc011bsq.1	-	17	1965	c.1965C>T	c.(1963-1965)TTC>TTT	p.F655F		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	655					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		CAATGACACGGAAGCCTTGCA	0.483													6	53					0	0	1	0	0
CPN2	1370	broad.mit.edu	37	3	194063279	194063279	+	Silent	SNP	C	T	T	rs141207947		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:194063279C>T	uc003fts.2	-	2	243	c.153G>A	c.(151-153)ACG>ACA	p.T51T		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	51					protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		TGATGTTTTTCGTATATGGCG	0.537													5	88					0	0	1	0	0
CPN2	1370	broad.mit.edu	37	3	194063426	194063426	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:194063426G>A	uc003fts.2	-	2	96	c.6C>T	c.(4-6)CTC>CTT	p.L2L		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	2					protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		AGGCTCCAGGGAGCATCTTCT	0.587													6	47					0	0	1	0	0
LRRC15	131578	broad.mit.edu	37	3	194081266	194081266	+	Silent	SNP	G	A	A	rs149184445		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:194081266G>A	uc003ftu.2	-	2	593	c.507C>T	c.(505-507)TTC>TTT	p.F169F	LRRC15_uc003ftt.2_Silent_p.F175F	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	169	Extracellular (Potential).|LRR 5.					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		CCAGGTGGTCGAAGGCTCCGT	0.592													10	195					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195501130	195501130	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:195501130G>A	uc011bto.1	-	5	13066	c.12606C>T	c.(12604-12606)TTC>TTT	p.F4202F	MUC4_uc003fuz.2_Missense_Mutation_p.S10L|MUC4_uc003fva.2_5'UTR|MUC4_uc003fvb.2_5'UTR|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_5'UTR|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_5'UTR|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_5'UTR|MUC4_uc011bti.1_5'UTR|MUC4_uc011btj.1_Silent_p.F71F|MUC4_uc011btk.1_5'UTR|MUC4_uc011btl.1_5'UTR|MUC4_uc011btm.1_Silent_p.F71F|MUC4_uc011btn.1_5'UTR|MUC4_uc003fvo.2_Silent_p.F94F|MUC4_uc003fvp.2_Silent_p.F43F|MUC4_uc010hzu.1_Silent_p.F942F	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1087					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TCCTCCTGACGAACTCCAGGT	0.627													8	42					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195516631	195516631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:195516631G>A	uc011bto.1	-	2	2280	c.1820C>T	c.(1819-1821)TCC>TTC	p.S607F	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.S489F	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	612					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		AATTTGTTGGGATGTGTGTCT	0.473													28	331					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195517001	195517001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:195517001C>T	uc011bto.1	-	2	1910	c.1450G>A	c.(1450-1452)GAA>AAA	p.E484K	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.E366K	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	489					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GTTGTTGTTTCATGTAGAGTA	0.493													15	102					0	0	1	0	0
OSTalpha	200931	broad.mit.edu	37	3	195953991	195953991	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:195953991G>A	uc003fwd.2	+	3	489	c.288_splice	c.e3+1	p.T96_splice	OSTalpha_uc011btu.1_Missense_Mutation_p.V97M|OSTalpha_uc010iac.1_5'Flank|OSTalpha_uc003fwe.2_5'Flank	NM_152672	NP_689885	Q86UW1	OSTA_HUMAN	organic solute transporter alpha							integral to membrane|plasma membrane	transporter activity			ovary(1)	1	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;8.83e-25)|all cancers(36;8.38e-23)|OV - Ovarian serous cystadenocarcinoma(49;7.08e-19)|LUSC - Lung squamous cell carcinoma(58;7.51e-07)|Lung(62;1.06e-06)	GBM - Glioblastoma multiforme(46;0.00202)		GGCACCCACGGTGAGGCCCCC	0.577													5	65					0	0	1	0	0
PCYT1A	5130	broad.mit.edu	37	3	195975103	195975103	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:195975103G>A	uc003fwg.2	-	5	482	c.309C>T	c.(307-309)TTC>TTT	p.F103F	PCYT1A_uc003fwh.2_Silent_p.F103F	NM_005017	NP_005008	P49585	PCY1A_HUMAN	choline phosphate cytidylyltransferase 1 alpha	103	Catalytic (Potential).					cytosol|soluble fraction	choline-phosphate cytidylyltransferase activity				0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.28e-24)|all cancers(36;1.01e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00259)	Choline(DB00122)	ACGTATTAGGGAAAAGGTTCT	0.443													12	122					0	0	1	0	0
SENP5	205564	broad.mit.edu	37	3	196612840	196612841	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:196612840_196612841CC>TT	uc003fwz.3	+	2	1037_1038	c.788_789CC>TT	c.(787-789)GCC>GTT	p.A263V	SENP5_uc011bty.1_Missense_Mutation_p.A263V	NM_152699	NP_689912	Q96HI0	SENP5_HUMAN	SUMO1/sentrin specific peptidase 5	263					cell cycle|cell division|proteolysis	nucleolus	cysteine-type peptidase activity			breast(2)|lung(1)	3	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;3.14e-24)|all cancers(36;2.1e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.03e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.004)		CTAAGAAAAGCCCAGCGAAGCT	0.48													7	44					0	0	1	0	0
MFI2	4241	broad.mit.edu	37	3	196754651	196754651	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:196754651G>A	uc003fxk.3	-	2	293	c.180C>T	c.(178-180)GCC>GCT	p.A60A	MFI2_uc003fxl.3_Silent_p.A60A|MFI2_uc011bua.1_Silent_p.A60A	NM_005929	NP_005920	P08582	TRFM_HUMAN	melanoma-associated antigen p97 isoform 1	60	Transferrin-like 1.				cellular iron ion homeostasis|iron ion transport	anchored to membrane|extracellular region|integral to plasma membrane	ferric iron binding|protein binding				0	all_cancers(143;3.95e-09)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.55e-24)|all cancers(36;2.87e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00536)		CGCAGTGGTCGGCGGAGGTGC	0.662													4	10					0	0	1	0	0
DLG1	1739	broad.mit.edu	37	3	197009663	197009663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:197009663G>A	uc003fxo.3	-	4	395	c.205C>T	c.(205-207)CGT>TGT	p.R69C	DLG1_uc011bud.1_5'UTR|DLG1_uc003fxn.3_Missense_Mutation_p.R69C|DLG1_uc011bue.1_Missense_Mutation_p.R69C|DLG1_uc010ial.2_Missense_Mutation_p.R69C|DLG1_uc011buf.1_RNA|DLG1_uc003fxp.2_RNA|DLG1_uc010iam.1_Missense_Mutation_p.R69C	NM_001098424	NP_001091894	Q12959	DLG1_HUMAN	discs, large homolog 1 isoform 1	69					actin filament organization|axon guidance|cell-cell adhesion|cortical actin cytoskeleton organization|endothelial cell proliferation|establishment or maintenance of cell polarity|interspecies interaction between organisms|mitotic cell cycle G1/S transition checkpoint|negative regulation of mitotic cell cycle|protein localization in plasma membrane|synaptic transmission|tight junction assembly	basolateral plasma membrane|cytosol|endoplasmic reticulum membrane|immunological synapse|MPP7-DLG1-LIN7 complex|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|tight junction	cytoskeletal protein binding|guanylate kinase activity|L27 domain binding|phosphatase binding|phosphoprotein phosphatase activity|potassium channel regulator activity|protein binding|protein C-terminus binding|protein kinase binding			ovary(3)	3	all_cancers(143;6.22e-10)|Ovarian(172;0.0418)|Breast(254;0.0589)	Lung NSC(153;0.133)	Epithelial(36;3.23e-24)|all cancers(36;2.15e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.0148)		GGCTTTGAACGATCTATACAT	0.358													8	85					0	0	1	0	0
KIAA0226	9711	broad.mit.edu	37	3	197427937	197427937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:197427937C>T	uc003fyc.2	-	7	991	c.808G>A	c.(808-810)GAT>AAT	p.D270N	KIAA0226_uc003fyd.3_Missense_Mutation_p.D210N|KIAA0226_uc003fye.1_5'UTR|KIAA0226_uc003fyf.2_Missense_Mutation_p.D103N|KIAA0226_uc003fyg.2_Missense_Mutation_p.D263N	NM_014687	NP_055502	Q92622	RUBIC_HUMAN	hypothetical protein LOC9711 isoform 2.	270	Ser-rich.				autophagy|endocytosis|negative regulation of autophagy|negative regulation of endocytosis	early endosome|late endosome|lysosome	protein binding				0	all_cancers(143;8.26e-10)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;2.19e-23)|all cancers(36;1.39e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.21e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(93;0.0446)		ATGGTTTGATCCTCTGCTGGT	0.512													15	62					0	0	1	0	0
IQCG	84223	broad.mit.edu	37	3	197670688	197670688	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:197670688G>A	uc003fyo.2	-	3	389	c.243C>T	c.(241-243)ATC>ATT	p.I81I	IQCG_uc003fyp.2_Silent_p.I81I|IQCG_uc003fyq.3_Silent_p.I81I	NM_001134435	NP_001127907	Q9H095	IQCG_HUMAN	IQ motif containing G	81											0	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;7.19e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.149)		GAACGGGCATGATGTAGTTCA	0.463													8	87					0	0	1	0	0
ZNF141	7700	broad.mit.edu	37	4	366926	366926	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:366926A>C	uc003gaa.2	+	5	878	c.700A>C	c.(700-702)AGC>CGC	p.S234R	ZNF141_uc003gab.2_Intron	NM_003441	NP_003432	Q15928	ZN141_HUMAN	zinc finger protein 141	234	C2H2-type 3.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0						AGAATGTGGCAGCATCTTTAC	0.338													3	44					0	0	1	0	0
GAK	2580	broad.mit.edu	37	4	860808	860808	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:860808G>A	uc003gbm.3	-	21	3007	c.2808C>T	c.(2806-2808)CTC>CTT	p.L936L	GAK_uc003gbn.3_Silent_p.L857L|GAK_uc010ibk.1_Silent_p.L830L|GAK_uc010ibi.2_Silent_p.L117L|GAK_uc010ibj.2_RNA|GAK_uc003gbl.3_Silent_p.L800L	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	936					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		GGCTTGCCAGGAGCAGCGGGT	0.697													6	53					0	0	1	0	0
IDUA	3425	broad.mit.edu	37	4	998080	998080	+	Nonsense_Mutation	SNP	C	T	T	rs121965025		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:998080C>T	uc003gby.2	+	14	1949	c.1861C>T	c.(1861-1863)CGA>TGA	p.R621*	IDUA_uc003gbz.2_RNA|IDUA_uc003gca.2_Nonsense_Mutation_p.R643*	NM_000203	NP_000194	P35475	IDUA_HUMAN	alpha-L-iduronidase precursor	621					disaccharide metabolic process	lysosome	cation binding|L-iduronidase activity				0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)		Laronidase(DB00090)	CTACCGAGTTCGAGCCCTGGA	0.662													9	63					0	0	1	0	0
KIAA1530	57654	broad.mit.edu	37	4	1377640	1377640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:1377640G>A	uc003gde.3	+	13	2395	c.1948G>A	c.(1948-1950)GGG>AGG	p.G650R	KIAA1530_uc010ibv.2_Missense_Mutation_p.G201R	NM_020894	NP_065945	Q2YD98	K1530_HUMAN	hypothetical protein LOC57654	650											0			OV - Ovarian serous cystadenocarcinoma(23;0.0138)			GAAAGGCAGGGGGAAGAAGAG	0.572													6	54					0	0	1	0	0
TACC3	10460	broad.mit.edu	37	4	1746292	1746292	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:1746292C>T	uc003gdo.2	+	14	2379	c.2271C>T	c.(2269-2271)ATC>ATT	p.I757I	TACC3_uc003gdp.2_Silent_p.I397I|TACC3_uc010ica.2_Silent_p.I178I	NM_006342	NP_006333	Q9Y6A5	TACC3_HUMAN	transforming, acidic coiled-coil containing	757	Potential.					centrosome				ovary(1)|central_nervous_system(1)	2		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.00765)|Epithelial(3;0.0126)			TGGCAAGGATCACCCAGGAGG	0.612													6	35					0	0	1	0	0
FGFR3	2261	broad.mit.edu	37	4	1807476	1807476	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:1807476G>A	uc003gdr.3	+	13	1902	c.1646_splice	c.e13-1	p.G549_splice	FGFR3_uc003gdu.2_Splice_Site_p.G551_splice|FGFR3_uc003gds.3_Splice_Site_p.G437_splice|FGFR3_uc003gdq.3_Splice_Site_p.G550_splice	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1						bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding			urinary_tract(2177)|skin(314)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)|pancreas(1)	2600		Breast(71;0.212)|all_epithelial(65;0.241)	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Palifermin(DB00039)	CGTGTCCCCAGGGCCCCTGTA	0.622		1	Mis|T	IGH@|ETV6	bladder|MM|T-cell lymphoma		Hypochondroplasia|Thanatophoric dysplasia		Muenke_syndrome|Saethre-Chotzen_syndrome				4	53					0	0	1	0	0
WHSC1	7468	broad.mit.edu	37	4	1961227	1961227	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:1961227C>T	uc003gdz.3	+	17	3191	c.3015C>T	c.(3013-3015)ATC>ATT	p.I1005I	WHSC1_uc003geb.3_Silent_p.I1005I|WHSC1_uc003gec.3_Silent_p.I1005I|WHSC1_uc003ged.3_Silent_p.I1005I|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gei.3_Silent_p.I224I|WHSC1_uc011bvh.1_Silent_p.I66I|WHSC1_uc010icf.2_Silent_p.I353I	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	1005					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		AAGTCCAGATCTACACAGCGG	0.493			T	IGH@	MM								7	32					0	0	1	0	0
ZFYVE28	57732	broad.mit.edu	37	4	2306802	2306802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:2306802G>A	uc003gex.1	-	8	1584	c.1265C>T	c.(1264-1266)CCA>CTA	p.P422L	ZFYVE28_uc011bvk.1_Missense_Mutation_p.P352L|ZFYVE28_uc011bvl.1_Missense_Mutation_p.P392L|ZFYVE28_uc003gew.1_Missense_Mutation_p.P308L	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	422					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						CCACCCAAATGGGCCAGCTGG	0.692													6	59					0	0	1	0	0
RNF4	6047	broad.mit.edu	37	4	2515531	2515531	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:2515531C>T	uc003gfb.2	+	8	894	c.558C>T	c.(556-558)CAC>CAT	p.H186H	RNF4_uc010icj.2_3'UTR|RNF4_uc003gfc.2_Silent_p.H186H	NM_002938	NP_002929	P78317	RNF4_HUMAN	ring finger protein 4	186					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|protein autoubiquitination|protein K11-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|protein K63-linked ubiquitination|regulation of kinetochore assembly|regulation of spindle assembly|response to arsenic-containing substance	cytoplasm|PML body	androgen receptor binding|DNA binding|nucleosome binding|sequence-specific DNA binding transcription factor activity|SUMO polymer binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding				0		all_epithelial(65;0.241)				AACGGTACCACCCCATTTATA	0.488													4	90					0	0	1	0	0
GRK4	2868	broad.mit.edu	37	4	3037241	3037241	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:3037241C>T	uc003ggn.1	+	13	1853	c.1398C>T	c.(1396-1398)TTC>TTT	p.F466F	GRK4_uc003ggo.1_Silent_p.F466F|GRK4_uc003ggp.1_Silent_p.F434F|GRK4_uc003ggq.1_Silent_p.F434F	NM_182982	NP_892027	P32298	GRK4_HUMAN	G protein-coupled receptor kinase 4 isoform	466	AGC-kinase C-terminal.					cell cortex	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		AGCCCCCTTTCTGTCCTGATG	0.507													7	76					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3117819	3117819	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:3117819C>T	uc011bvq.1	+	9	1048	c.903C>T	c.(901-903)CTC>CTT	p.L301L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	299					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CAGGCTTACTCGTTCCTGTCG	0.498													12	122					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3129189	3129189	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:3129189C>T	uc011bvq.1	+	13	1752	c.1607C>T	c.(1606-1608)TCC>TTC	p.S536F		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	534					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		AGCCACAGCTCCAGCCAGGTC	0.607													4	32					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3221963	3221963	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:3221963C>T	uc011bvq.1	+	54	7448	c.7303C>T	c.(7303-7305)CCT>TCT	p.P2435S		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2433					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CACAGCATTCCCTGAGATCCC	0.512													11	113					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3221983	3221983	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:3221983C>T	uc011bvq.1	+	54	7468	c.7323C>T	c.(7321-7323)TTC>TTT	p.F2441F		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2439					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CCGTGGAGTTCCTCCAGGAAA	0.512													8	109					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3224155	3224155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:3224155C>T	uc011bvq.1	+	55	7562	c.7417C>T	c.(7417-7419)CTC>TTC	p.L2473F		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2471					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		TTGGGCCACCCTCCTTGGTGT	0.532													5	66					0	0	1	0	0
RGS12	6002	broad.mit.edu	37	4	3318767	3318767	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:3318767C>T	uc003ggw.2	+	2	1774	c.870C>T	c.(868-870)GTC>GTT	p.V290V	RGS12_uc003ggu.2_Silent_p.V290V|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Silent_p.V290V|RGS12_uc003ggx.1_Silent_p.V290V	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	290	PID.					condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		AGGCTGGAGTCGTGGCCGAGT	0.617													9	45					0	0	1	0	0
RGS12	6002	broad.mit.edu	37	4	3319706	3319706	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:3319706C>T	uc003ggw.2	+	2	2713	c.1809C>T	c.(1807-1809)TCC>TCT	p.S603S	RGS12_uc003ggu.2_Silent_p.S603S|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Silent_p.S603S|RGS12_uc003ggx.1_Silent_p.S603S	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	603						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GGGAGTGGTCCAGGAAGGCCT	0.577													8	149					0	0	1	0	0
MSX1	4487	broad.mit.edu	37	4	4864557	4864557	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:4864557C>A	uc003gif.2	+	2	834	c.599C>A	c.(598-600)GCC>GAC	p.A200D		NM_002448	NP_002439	P28360	MSX1_HUMAN	msh homeobox 1	194	Homeobox.				apoptotic nuclear change|face morphogenesis|negative regulation of cell growth|odontogenesis of dentine-containing tooth|positive regulation of apoptosis|protein localization to nucleus|protein stabilization	nucleus	p53 binding|sequence-specific DNA binding transcription factor activity				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		CTGTCCATCGCCGAGCGCGCG	0.622													11	59					0.00136819	0.00138067	1	1	0
EVC2	132884	broad.mit.edu	37	4	5633672	5633672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:5633672C>T	uc003gij.2	-	11	1612	c.1558G>A	c.(1558-1560)GAA>AAA	p.E520K	EVC2_uc011bwb.1_5'UTR|EVC2_uc003gik.2_Missense_Mutation_p.E440K	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	520	Potential.					integral to membrane				large_intestine(3)|ovary(2)	5						GCAAAGTCTTCTTCTTGTTGC	0.473													6	53					0	0	1	0	0
CRMP1	1400	broad.mit.edu	37	4	5837732	5837732	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:5837732C>T	uc003gip.2	-	12	1292	c.1191G>A	c.(1189-1191)AGG>AGA	p.R397R	CRMP1_uc003gin.1_Silent_p.R309R|CRMP1_uc003giq.2_Silent_p.R397R|CRMP1_uc003gir.2_Silent_p.R392R|CRMP1_uc003gis.2_Silent_p.R511R	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	397					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		TCCGCCCTTTCCTTGGGTACA	0.532													14	100					0	0	1	0	0
C4orf50	389197	broad.mit.edu	37	4	5961201	5961201	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:5961201G>A	uc003git.1	-	7	822	c.732C>T	c.(730-732)CTC>CTT	p.L244L		NM_207405	NP_997288	Q6ZRC1	CD050_HUMAN	hypothetical protein LOC389197	244										pancreas(2)|breast(1)	3						CTGGGCTCAGGAGCTCAGAGG	0.522													6	64					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6066665	6066665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:6066665G>A	uc003giu.3	-	9	1649	c.1373C>T	c.(1372-1374)TCC>TTC	p.S458F	JAKMIP1_uc010idb.1_Missense_Mutation_p.S458F|JAKMIP1_uc010idc.1_Missense_Mutation_p.S273F|JAKMIP1_uc010idd.1_Missense_Mutation_p.S458F|JAKMIP1_uc011bwc.1_Missense_Mutation_p.S293F|JAKMIP1_uc003giv.3_Missense_Mutation_p.S458F|JAKMIP1_uc010ide.2_Missense_Mutation_p.S458F	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	458	Mediates interaction with TYK2 and GABBR1.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TGTGTTGTAGGATGTTTCGGA	0.493													5	48					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6107505	6107505	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:6107505C>T	uc003giu.3	-	3	595	c.319G>A	c.(319-321)GAG>AAG	p.E107K	JAKMIP1_uc010idb.1_Missense_Mutation_p.E107K|JAKMIP1_uc010idc.1_Intron|JAKMIP1_uc010idd.1_Missense_Mutation_p.E107K|JAKMIP1_uc011bwc.1_Intron|JAKMIP1_uc003giv.3_Missense_Mutation_p.E107K|JAKMIP1_uc010ide.2_Missense_Mutation_p.E107K	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	107	Potential.|Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						AGCTCGCCCTCCTTGATCTTG	0.711													5	27					0	0	1	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6374389	6374389	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:6374389C>T	uc003gjc.2	-	5	856	c.486G>A	c.(484-486)GTG>GTA	p.V162V	PPP2R2C_uc003gjb.2_Silent_p.V145V|PPP2R2C_uc011bwd.1_Silent_p.V155V|PPP2R2C_uc011bwe.1_Silent_p.V155V|PPP2R2C_uc003gja.2_Silent_p.V162V|PPP2R2C_uc003gjd.1_Silent_p.V250V	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	162					signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						TCCGAGGGCTCACCTCCACCA	0.577													15	79					0	0	1	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6473933	6473933	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:6473933C>T	uc003gjc.2	-	1	394	c.24G>A	c.(22-24)CGG>CGA	p.R8R	PPP2R2C_uc011bwd.1_Intron|PPP2R2C_uc011bwe.1_Intron	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	8					signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						GGTTAATTTTCCGCGTGTCCG	0.667													10	160					0	0	1	0	0
KIAA0232	9778	broad.mit.edu	37	4	6863957	6863957	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:6863957C>T	uc003gjr.3	+	7	2311	c.1848C>T	c.(1846-1848)CCC>CCT	p.P616P	KIAA0232_uc003gjq.3_Silent_p.P616P	NM_014743	NP_055558	Q92628	K0232_HUMAN	hypothetical protein LOC9778	616							ATP binding			ovary(2)	2						GACTCTCTCCCATCTTAGACA	0.463													4	18					0	0	1	0	0
PSAPL1	768239	broad.mit.edu	37	4	7435764	7435764	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:7435764C>T	uc011bwj.1	-	1	937	c.843G>A	c.(841-843)AGG>AGA	p.R281R	SORCS2_uc003gkb.3_Intron|SORCS2_uc011bwi.1_Intron	NM_001085382	NP_001078851	Q6NUJ1	SAPL1_HUMAN	prosaposin-like protein 1	281					sphingolipid metabolic process	extracellular region|lysosome					0						CGCTCTGTTTCCTTGGCAACC	0.602													4	36					0	0	1	0	0
SORCS2	57537	broad.mit.edu	37	4	7668894	7668894	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:7668894G>A	uc003gkb.3	+	8	1115	c.1115G>A	c.(1114-1116)CGA>CAA	p.R372Q	SORCS2_uc011bwi.1_Missense_Mutation_p.R200Q	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	372	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						TCTTATCGTCGAAATGAATTT	0.493													13	120					0	0	1	0	0
ACOX3	8310	broad.mit.edu	37	4	8401339	8401339	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:8401339G>A	uc010idk.2	-	8	962	c.817C>T	c.(817-819)CTT>TTT	p.L273F	ACOX3_uc003glc.3_Missense_Mutation_p.L273F|ACOX3_uc003gld.3_Missense_Mutation_p.L273F|ACOX3_uc003gle.1_Missense_Mutation_p.L178F	NM_003501	NP_003492	O15254	ACOX3_HUMAN	acyl-Coenzyme A oxidase 3 isoform a	273					bile acid metabolic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|pristanoyl-CoA oxidase activity			central_nervous_system(1)	1						CGGTTCAGAAGGCTCTGGCGA	0.602													4	49					0	0	1	0	0
CPZ	8532	broad.mit.edu	37	4	8621098	8621098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:8621098G>A	uc003glm.2	+	11	1839	c.1713G>A	c.(1711-1713)ATG>ATA	p.M571I	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Missense_Mutation_p.M434I|CPZ_uc003glo.2_Missense_Mutation_p.M560I|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	571					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						CCGCCCGGATGAAGAGGGCTG	0.582													7	29					0	0	1	0	0
CPZ	8532	broad.mit.edu	37	4	8621189	8621189	+	Missense_Mutation	SNP	G	A	A	rs151079768	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:8621189G>A	uc003glm.2	+	11	1930	c.1804G>A	c.(1804-1806)GAC>AAC	p.D602N	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Missense_Mutation_p.D465N|CPZ_uc003glo.2_Missense_Mutation_p.D591N|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	602					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						TGGGCCCCACGACCCACTGGG	0.677													8	49					0	0	1	0	0
DRD5	1816	broad.mit.edu	37	4	9784168	9784168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:9784168C>T	uc003gmb.3	+	1	911	c.515C>T	c.(514-516)TCC>TTC	p.S172F		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	172	Helical; Name=4; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	ATCCTCATCTCCTTCATTCCG	0.627													6	45					0	0	1	0	0
DRD5	1816	broad.mit.edu	37	4	9784261	9784261	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:9784261G>A	uc003gmb.3	+	1	1004	c.608G>A	c.(607-609)TGG>TAG	p.W203*		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	203	Extracellular (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	TGGACGCCCTGGGAGGAGGAC	0.592													5	73					0	0	1	0	0
SLC2A9	56606	broad.mit.edu	37	4	9943605	9943605	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:9943605A>T	uc003gmc.2	-	6	807	c.746T>A	c.(745-747)CTT>CAT	p.L249H	SLC2A9_uc003gmd.2_Missense_Mutation_p.L220H	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	249	Helical; Name=6; (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						GAGAAAGGGAAGGCTCAGCAG	0.587													5	54					0	0	1	0	0
CPEB2	132864	broad.mit.edu	37	4	15060078	15060078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:15060078C>T	uc003gni.1	+	8	1247	c.1160C>T	c.(1159-1161)TCA>TTA	p.S387L	CPEB2_uc003gnj.1_Missense_Mutation_p.S357L|CPEB2_uc003gnk.1_Missense_Mutation_p.S395L|CPEB2_uc003gnl.1_Missense_Mutation_p.S368L|CPEB2_uc003gnm.1_Missense_Mutation_p.S365L|CPEB2_uc003gnn.1_Missense_Mutation_p.S360L	NM_182485	NP_872291	Q7Z5Q1	CPEB2_HUMAN	cytoplasmic polyadenylation element binding	387	RRM 1.				regulation of translation	cytoplasm	nucleotide binding|RNA binding			skin(1)	1						GAAGAGAGCTCAGTTCAGGCA	0.378													4	16					0	0	1	0	0
C1QTNF7	114905	broad.mit.edu	37	4	15444102	15444102	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:15444102G>A	uc011bxb.1	+	3	776	c.549G>A	c.(547-549)GGG>GGA	p.G183G	C1QTNF7_uc003gno.2_Silent_p.G190G|C1QTNF7_uc003gnp.2_Silent_p.G183G	NM_001135171	NP_001128643	Q9BXJ2	C1QT7_HUMAN	C1q and tumor necrosis factor related protein 7	183	C1q.					collagen					0						CTGCCACAGGGAAGTTCATCT	0.438													23	136					0	0	1	0	0
CD38	952	broad.mit.edu	37	4	15780091	15780091	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:15780091C>T	uc011bxc.1	+	1	161	c.54C>T	c.(52-54)CTC>CTT	p.L18L	CD38_uc003goj.1_Silent_p.L18L|CD38_uc003gol.1_Silent_p.L18L	NM_001775	NP_001766	P28907	CD38_HUMAN	CD38 antigen	18	Cytoplasmic (Potential).				B cell receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of apoptosis|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of transcription, DNA-dependent|response to drug	integral to membrane|plasma membrane	binding|NAD+ nucleosidase activity|receptor activity			ovary(2)	2						GCTGCCGGCTCTCTAGGAGAG	0.667													16	94					0	0	1	0	0
CD38	952	broad.mit.edu	37	4	15842143	15842143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:15842143C>T	uc011bxc.1	+	7	928	c.821C>T	c.(820-822)TCC>TTC	p.S274F	CD38_uc003gol.1_Missense_Mutation_p.S274F	NM_001775	NP_001766	P28907	CD38_HUMAN	CD38 antigen	274	Extracellular (Potential).				B cell receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of apoptosis|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of transcription, DNA-dependent|response to drug	integral to membrane|plasma membrane	binding|NAD+ nucleosidase activity|receptor activity			ovary(2)	2						ATTCAATTTTCCTGCAAGAAT	0.348													6	36					0	0	1	0	0
CLRN2	645104	broad.mit.edu	37	4	17528535	17528535	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:17528535C>T	uc003gpg.1	+	3	631	c.529C>T	c.(529-531)CAG>TAG	p.Q177*		NM_001079827	NP_001073296	A0PK11	CLRN2_HUMAN	clarin 2	177						integral to membrane					0						GAAGCTCTTCCAGTTTGTGGT	0.557													4	53					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20493436	20493436	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:20493436C>T	uc003gpr.1	+	9	1032	c.828C>T	c.(826-828)GCC>GCT	p.A276A	SLIT2_uc003gps.1_Silent_p.A276A	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	276	LRRNT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding	p.A276T(1)		central_nervous_system(4)|skin(4)|ovary(3)	11						GCCCTGCCGCCTGTACCTGTA	0.418													7	42					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20544117	20544117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:20544117G>A	uc003gpr.1	+	21	2348	c.2144G>A	c.(2143-2145)GGA>GAA	p.G715E	SLIT2_uc003gps.1_Missense_Mutation_p.G707E	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	715					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TGCGATTTAGGAAATGATGAC	0.408													5	55					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20618814	20618814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:20618814G>A	uc003gpr.1	+	35	4333	c.4129G>A	c.(4129-4131)GGA>AGA	p.G1377R	SLIT2_uc003gps.1_Missense_Mutation_p.G1369R	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1377					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CCCTTGCCTTGGAAATAAGTA	0.507													7	40					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23826108	23826108	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:23826108G>A	uc003gqs.2	-	6	901	c.781C>T	c.(781-783)CCT>TCT	p.P261S	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	261					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				GGGGTCAGAGGAAGAGATAAA	0.348													6	48					0	0	1	0	0
LGI2	55203	broad.mit.edu	37	4	25005525	25005525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:25005525G>A	uc003grf.2	-	8	1285	c.1186C>T	c.(1186-1188)CCC>TCC	p.P396S		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	396	EAR 4.					extracellular region					0		Breast(46;0.173)				AGGATGATGGGGACCTGGGAG	0.517													5	83					0	0	1	0	0
LGI2	55203	broad.mit.edu	37	4	25005663	25005663	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:25005663G>A	uc003grf.2	-	8	1147	c.1048C>T	c.(1048-1050)CTG>TTG	p.L350L		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	350	EAR 3.					extracellular region					0		Breast(46;0.173)				ACTGTGGACAGACCAGCCTTT	0.478													6	29					0	0	1	0	0
LGI2	55203	broad.mit.edu	37	4	25014024	25014024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:25014024C>T	uc003grf.2	-	7	852	c.753G>A	c.(751-753)ATG>ATA	p.M251I		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	251	EAR 1.					extracellular region					0		Breast(46;0.173)				TGCAGTTCTCCATGCTGGGCT	0.473													5	49					0	0	1	0	0
ZCCHC4	29063	broad.mit.edu	37	4	25335045	25335045	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:25335045C>T	uc003grl.3	+	4	606	c.570C>T	c.(568-570)CTC>CTT	p.L190L	ZCCHC4_uc003grm.1_RNA|ZCCHC4_uc003grn.3_5'UTR	NM_024936	NP_079212	Q9H5U6	ZCHC4_HUMAN	zinc finger, CCHC domain containing 4	190							methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(2)	2		Breast(46;0.0503)				TTTCTGCCCTCGGATTCAGAA	0.393													8	55					0	0	1	0	0
ANAPC4	29945	broad.mit.edu	37	4	25379079	25379079	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:25379079C>T	uc003gro.2	+	2	159	c.30C>T	c.(28-30)TCC>TCT	p.S10S		NM_013367	NP_037499	Q9UJX5	APC4_HUMAN	anaphase-promoting complex subunit 4	10					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5		Breast(46;0.0503)				GTTTCCCATCCTTCCGGGTGG	0.632													5	36					0	0	1	0	0
SLC34A2	10568	broad.mit.edu	37	4	25667891	25667891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:25667891C>T	uc003grr.2	+	5	602	c.521C>T	c.(520-522)TCA>TTA	p.S174L	SLC34A2_uc003grs.2_Missense_Mutation_p.S173L|SLC34A2_uc010iev.2_Missense_Mutation_p.S173L	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	174	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				GTGTCCTCTTCATGTGAGTCG	0.572													5	55					0	0	1	0	0
SEL1L3	23231	broad.mit.edu	37	4	25789932	25789932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:25789932C>T	uc003gru.3	-	13	2283	c.2131G>A	c.(2131-2133)GAA>AAA	p.E711K	SEL1L3_uc003grv.2_Missense_Mutation_p.E118K	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	711	Sel1-like 3.					integral to membrane	binding				0						ATTGCTGCTTCGGGATTCTTG	0.463													6	54					0	0	1	0	0
RBPJ	3516	broad.mit.edu	37	4	26431630	26431630	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:26431630T>C	uc003grx.1	+	10	1274	c.1038T>C	c.(1036-1038)CCT>CCC	p.P346P	RBPJ_uc003gry.1_Silent_p.P331P|RBPJ_uc003grz.1_Silent_p.P346P|RBPJ_uc011bxt.1_Silent_p.P346P|RBPJ_uc003gsa.1_Silent_p.P332P|RBPJ_uc003gsb.1_Silent_p.P333P|RBPJ_uc003gsc.1_Silent_p.P332P|uc003gsd.2_5'Flank	NM_005349	NP_005340	Q06330	SUH_HUMAN	recombining binding protein suppressor of	346					DNA recombination|negative regulation of transcription, DNA-dependent|positive regulation of transcription of Notch receptor target	cytoplasm|nucleolus|nucleoplasm	DNA binding|protein binding|recombinase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)	3		Breast(46;0.0503)				GAATGGGCCCTGTCCTTGCCC	0.483													3	19					0	0	1	0	0
PCDH7	5099	broad.mit.edu	37	4	30724158	30724158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:30724158C>T	uc003gsk.1	+	1	2122	c.1114C>T	c.(1114-1116)CGG>TGG	p.R372W	PCDH7_uc011bxw.1_Missense_Mutation_p.R325W|PCDH7_uc011bxx.1_Missense_Mutation_p.R372W	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	372	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						CGTCCTGCACCGGATCGACCG	0.677													8	33					0	0	1	0	0
RELL1	768211	broad.mit.edu	37	4	37650952	37650952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:37650952G>A	uc003gsz.2	-	2	349	c.259C>T	c.(259-261)CGT>TGT	p.R87C	RELL1_uc010ifc.2_Missense_Mutation_p.R87C	NM_001085399	NP_001078868	Q8IUW5	RELL1_HUMAN	receptor expressed in lymphoid tissues like 1	87	Cytoplasmic (Potential).					cytoplasm|integral to membrane|microtubule cytoskeleton|plasma membrane					0						GTTGTACAACGATAGCCTTTC	0.433													9	110					0	0	1	0	0
RELL1	768211	broad.mit.edu	37	4	37651040	37651040	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:37651040T>A	uc003gsz.2	-	2	261	c.171A>T	c.(169-171)GAA>GAT	p.E57D	RELL1_uc010ifc.2_Missense_Mutation_p.E57D	NM_001085399	NP_001078868	Q8IUW5	RELL1_HUMAN	receptor expressed in lymphoid tissues like 1	57	Extracellular (Potential).					cytoplasm|integral to membrane|microtubule cytoskeleton|plasma membrane					0						ATGCAATATATTCTGGGTGTC	0.498													15	119					0	0	1	0	0
TBC1D1	23216	broad.mit.edu	37	4	38051354	38051354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:38051354C>T	uc003gtb.2	+	11	2088	c.1745C>T	c.(1744-1746)GCT>GTT	p.A582V	TBC1D1_uc011byd.1_Missense_Mutation_p.A582V|TBC1D1_uc010ifd.2_Missense_Mutation_p.A329V|TBC1D1_uc011byf.1_Missense_Mutation_p.A453V	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	582						nucleus	Rab GTPase activator activity			ovary(1)	1						GAAGAGCCAGCTCCGCTGTCG	0.622													4	86					0	0	1	0	0
TBC1D1	23216	broad.mit.edu	37	4	38119797	38119797	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:38119797C>T	uc003gtb.2	+	17	3289	c.2946C>T	c.(2944-2946)TTC>TTT	p.F982F	TBC1D1_uc011byd.1_Intron|TBC1D1_uc010ifd.2_Silent_p.F769F|TBC1D1_uc003gtd.2_5'Flank	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	982	Rab-GAP TBC.					nucleus	Rab GTPase activator activity			ovary(1)	1						CGCTGGGATTCGTAGCCAGAG	0.522													10	68					0	0	1	0	0
TLR1	7096	broad.mit.edu	37	4	38798235	38798235	+	Missense_Mutation	SNP	G	A	A	rs41305843		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:38798235G>A	uc003gtl.2	-	4	2492	c.2218C>T	c.(2218-2220)CCT>TCT	p.P740S		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	740	Cytoplasmic (Potential).|TIR.				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						TAACTGCTAGGAATGGAGTAC	0.438													4	40					0	0	1	0	0
TLR1	7096	broad.mit.edu	37	4	38798936	38798936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:38798936G>A	uc003gtl.2	-	4	1791	c.1517C>T	c.(1516-1518)TCG>TTG	p.S506L		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	506	Extracellular (Potential).|LRR 12.				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						GAAATCAGCCGATGGGTGGGA	0.418													10	69					0	0	1	0	0
CHRNA9	55584	broad.mit.edu	37	4	40337520	40337520	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:40337520G>A	uc003gva.1	+	1	52	c.36G>A	c.(34-36)TGG>TGA	p.W12*		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	12					elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	CCTTTTGCTGGATCTACTTTG	0.507													6	39					0	0	1	0	0
CHRNA9	55584	broad.mit.edu	37	4	40351265	40351265	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:40351265C>T	uc003gva.1	+	4	748	c.732C>T	c.(730-732)CTC>CTT	p.L244L		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	244	Helical; (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	TCGTCAACCTCCTCATCCCAT	0.517													22	237					0	0	1	0	0
CHRNA9	55584	broad.mit.edu	37	4	40356210	40356210	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:40356210G>A	uc003gva.1	+	5	1129	c.1113G>A	c.(1111-1113)ACG>ACA	p.T371T		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	371	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	ACCACCTCACGAAAGTTTATA	0.493													7	69					0	0	1	0	0
UCHL1	7345	broad.mit.edu	37	4	41262675	41262675	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:41262675C>T	uc003gvo.2	+	4	282	c.186C>T	c.(184-186)TTC>TTT	p.F62F	UCHL1_uc003gvp.2_5'UTR|UCHL1_uc003gvq.2_5'UTR|UCHL1_uc003gvr.2_5'UTR|UCHL1_uc003gvs.2_5'UTR	NM_004181	NP_004172	P09936	UCHL1_HUMAN	ubiquitin carboxyl-terminal esterase L1	62					cell death|negative regulation of MAP kinase activity|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus|plasma membrane	alpha-2A adrenergic receptor binding|cysteine-type endopeptidase activity|ligase activity|omega peptidase activity|ubiquitin binding|ubiquitin thiolesterase activity			central_nervous_system(1)|skin(1)	2						ATGAGAACTTCAGGAAAAAGC	0.408													5	31					0	0	1	0	0
UCHL1	7345	broad.mit.edu	37	4	41262768	41262768	+	Silent	SNP	C	T	T	rs121917767		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:41262768C>T	uc003gvo.2	+	4	375	c.279C>T	c.(277-279)ATC>ATT	p.I93I	UCHL1_uc003gvp.2_Silent_p.I12I|UCHL1_uc003gvq.2_Silent_p.I12I|UCHL1_uc003gvr.2_Silent_p.I12I|UCHL1_uc003gvs.2_Silent_p.I12I	NM_004181	NP_004172	P09936	UCHL1_HUMAN	ubiquitin carboxyl-terminal esterase L1	93			I -> M (in PARK5; impaired enzymatic hydrolase activity; has about a 50% reduction in catalytic activity compared to wild-type protein).		cell death|negative regulation of MAP kinase activity|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus|plasma membrane	alpha-2A adrenergic receptor binding|cysteine-type endopeptidase activity|ligase activity|omega peptidase activity|ubiquitin binding|ubiquitin thiolesterase activity			central_nervous_system(1)|skin(1)	2						GTGGCACAATCGGACTTATTC	0.443													7	84					0	0	1	0	0
DCAF4L1	285429	broad.mit.edu	37	4	41984005	41984005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:41984005C>T	uc003gwk.2	+	1	293	c.196C>T	c.(196-198)CCC>TCC	p.P66S		NM_001029955	NP_001025126	Q3SXM0	DC4L1_HUMAN	WD repeat domain 21B	66										skin(1)	1						GAGCTTGGATCCCTCCTCTTT	0.532													5	34					0	0	1	0	0
SLC30A9	10463	broad.mit.edu	37	4	42065035	42065035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:42065035C>T	uc003gwl.2	+	11	1075	c.929C>T	c.(928-930)TCG>TTG	p.S310L	SLC30A9_uc011byx.1_Missense_Mutation_p.S70L	NM_006345	NP_006336	Q6PML9	ZNT9_HUMAN	solute carrier family 30 (zinc transporter),	310					nucleotide-excision repair|zinc ion transport	cytoskeleton|integral to membrane|nucleus	cation transmembrane transporter activity|nucleotide binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3						TATATTTCTTCGCTAATTAGT	0.348													8	70					0	0	1	0	0
SHISA3	152573	broad.mit.edu	37	4	42403047	42403047	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:42403047T>A	uc003gwp.2	+	2	514	c.296T>A	c.(295-297)TTT>TAT	p.F99Y		NM_001080505	NP_001073974	A0PJX4	SHSA3_HUMAN	shisa homolog 3 precursor	99	Helical; (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane				ovary(1)|skin(1)	2						TACGTCCCCTTTCTCATCGTC	0.502													5	126					0	0	1	0	0
ATP8A1	10396	broad.mit.edu	37	4	42424830	42424830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:42424830C>T	uc003gwr.2	-	35	3531	c.3299G>A	c.(3298-3300)GGA>GAA	p.G1100E	ATP8A1_uc003gwq.2_Missense_Mutation_p.G326E|ATP8A1_uc003gws.2_Missense_Mutation_p.G1085E	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	1100	Cytoplasmic (Potential).|ATP (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TTACCTTTTTCCAAGTACAAC	0.343													20	101					0	0	1	0	0
GABRB1	2560	broad.mit.edu	37	4	47427765	47427765	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:47427765G>A	uc003gxh.2	+	9	1529	c.1155G>A	c.(1153-1155)ACG>ACA	p.T385T	GABRB1_uc011bze.1_Silent_p.T315T	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	385	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	AAGTGCTCACGAGCGTGAGCG	0.622													5	56					0	0	1	0	0
ATP10D	57205	broad.mit.edu	37	4	47589171	47589171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:47589171C>T	uc003gxk.1	+	22	4053	c.3889C>T	c.(3889-3891)CCA>TCA	p.P1297S	ATP10D_uc003gxl.1_Missense_Mutation_p.P545S	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	1297	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						CATGCTGGATCCAGTATTCTA	0.398													4	25					0	0	1	0	0
NIPAL1	152519	broad.mit.edu	37	4	48037601	48037601	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:48037601C>T	uc003gxw.2	+	6	711	c.645C>T	c.(643-645)ATC>ATT	p.I215I		NM_207330	NP_997213	Q6NVV3	NIPA3_HUMAN	NIPA-like domain containing 1	215	Helical; (Potential).					integral to membrane					0						TTGCTGTGATCATAACTGTGA	0.368													5	86					0	0	1	0	0
FRYL	285527	broad.mit.edu	37	4	48525002	48525002	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:48525002G>A	uc003gyh.1	-	54	8042	c.7437C>T	c.(7435-7437)AAC>AAT	p.N2479N	FRYL_uc003gyf.1_5'Flank|FRYL_uc003gyg.1_Silent_p.N1175N|FRYL_uc003gyi.1_Silent_p.N1367N|FRYL_uc003gyj.1_Silent_p.N774N	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	2479					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						GATTGGTGAGGTTCAGGCTGG	0.522													6	36					0	0	1	0	0
OCIAD2	132299	broad.mit.edu	37	4	48906544	48906544	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:48906544C>T	uc003gyt.2	-	2	226	c.23G>A	c.(22-24)GGA>GAA	p.G8E	OCIAD2_uc003gyu.2_Missense_Mutation_p.G8E	NM_001014446	NP_001014446	Q56VL3	OCAD2_HUMAN	OCIA domain containing 2 isoform 1	8	OCIA.					endosome					0						ATCTTGGTTTCCACGAGCAGA	0.378													14	55					0	0	1	0	0
GSX2	170825	broad.mit.edu	37	4	54967895	54967895	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:54967895C>T	uc010igp.1	+	2	985	c.721C>T	c.(721-723)CTG>TTG	p.L241L	PDGFRA_uc003haa.2_Intron	NM_133267	NP_573574	Q9BZM3	GSX2_HUMAN	GS homeobox 2	241	Homeobox.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(7;0.00671)|Lung NSC(11;0.0154)|all_neural(26;0.0209)|Glioma(25;0.08)|all_epithelial(27;0.147)		LUSC - Lung squamous cell carcinoma(32;0.00216)			TTACCTGAACCTGTCGGAGAA	0.547													7	136					0	0	1	0	0
PDGFRA	5156	broad.mit.edu	37	4	55133465	55133465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:55133465G>A	uc003han.3	+	6	1100	c.769G>A	c.(769-771)GGC>AGC	p.G257S	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Missense_Mutation_p.G151S|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	257	Ig-like C2-type 3.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GAAAGGCAAAGGCATCACAAT	0.353			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			4	44					0	0	1	0	0
PDGFRA	5156	broad.mit.edu	37	4	55141026	55141026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:55141026C>T	uc003han.3	+	12	2003	c.1672C>T	c.(1672-1674)CGC>TGC	p.R558C	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Missense_Mutation_p.R452C|PDGFRA_uc003ham.2_RNA|PDGFRA_uc003hao.1_5'Flank	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	558	Cytoplasmic (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GTATGAAATTCGCTGGAGGGT	0.463			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			4	47					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55956149	55956149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:55956149C>T	uc003has.2	-	23	3468	c.3166G>A	c.(3166-3168)GAT>AAT	p.D1056N	KDR_uc003hat.1_Missense_Mutation_p.D1056N	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1056	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TAATCTGGATCTTTATAAATA	0.428			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			5	22					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55984888	55984888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:55984888C>T	uc003has.2	-	3	543	c.241G>A	c.(241-243)GAT>AAT	p.D81N	KDR_uc003hat.1_Missense_Mutation_p.D81N|KDR_uc011bzx.1_Missense_Mutation_p.D81N	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	81	Ig-like C2-type 1.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	AAGAGGCCATCGCTGCACTCA	0.498			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			5	34					0	0	1	0	0
ARL9	132946	broad.mit.edu	37	4	57377506	57377506	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:57377506C>T	uc003hby.1	+	2	457	c.9C>T	c.(7-9)TTC>TTT	p.F3F		NM_206919	NP_996802	Q6T311	ARL9_HUMAN	ADP-ribosylation factor-like 9	67							GTP binding				0	Glioma(25;0.08)|all_neural(26;0.101)					AGATGGAGTTCCTGGAGAGTA	0.443													4	63					0	0	1	0	0
LPHN3	23284	broad.mit.edu	37	4	62758607	62758607	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:62758607C>A	uc010ihh.2	+	7	1683	c.1510C>A	c.(1510-1512)CGA>AGA	p.R504R	LPHN3_uc003hcq.3_Silent_p.R504R|LPHN3_uc003hcs.1_Silent_p.R333R	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	504	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TGTGGAAGCCCGAGAAATCAT	0.488													4	12					1	1	1	1	0
Unknown	0	broad.mit.edu	37	4	69362374	69362374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:69362374G>A	uc003hdz.3	+	10	1188	c.1124G>A	c.(1123-1125)GGA>GAA	p.G375E		NM_014058	NP_054777			transmembrane protease, serine 11E																		GACTCTGGAGGACCACTGGTT	0.393													12	156					0	0	1	0	0
UGT2B15	7366	broad.mit.edu	37	4	69533878	69533878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:69533878C>T	uc011cal.1	-	2	791	c.753G>A	c.(751-753)ATG>ATA	p.M251I		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	251					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						CAGCTTTCCCCATTGTCTCAA	0.363													6	29					0	0	1	0	0
UGT2B15	7366	broad.mit.edu	37	4	69535661	69535661	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:69535661G>A	uc011cal.1	-	1	714	c.676C>T	c.(676-678)CAA>TAA	p.Q226*		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	226					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						TCATAAATTTGAAACCAAAAG	0.318													5	27					0	0	1	0	0
UGT2B4	7363	broad.mit.edu	37	4	70346421	70346421	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:70346421G>A	uc003hek.3	-	6	1565	c.1518C>T	c.(1516-1518)TTC>TTT	p.F506F	UGT2B4_uc011cap.1_Silent_p.F370F|UGT2B4_uc003hel.3_3'UTR	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	506	Helical; (Potential).				estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						TTGTGATGATGAATATCACAG	0.488													5	14					0	0	1	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361447	70361447	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:70361447C>T	uc003hek.3	-	1	180	c.133G>A	c.(133-135)GAA>AAA	p.E45K	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Missense_Mutation_p.E45K	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	45					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						TGGACAAGTTCATCCAGGATT	0.448													4	20					0	0	1	0	0
SULT1B1	27284	broad.mit.edu	37	4	70615450	70615450	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:70615450T>C	uc003hen.2	-	4	662	c.364A>G	c.(364-366)AAC>GAC	p.N122D		NM_014465	NP_055280	O43704	ST1B1_HUMAN	sulfotransferase family, cytosolic, 1B, member	122					3'-phosphoadenosine 5'-phosphosulfate metabolic process|cellular biogenic amine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|thyroid hormone metabolic process|xenobiotic metabolic process	cytosol					0						TTGCAATTGTTTTCCCAGAAA	0.358													10	54					0	0	1	0	0
PROL1	58503	broad.mit.edu	37	4	71275548	71275548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:71275548C>T	uc003hfi.2	+	3	677	c.503C>T	c.(502-504)TCC>TTC	p.S168F		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	168	Thr-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				ACCAGCACTTCCACAAAACCC	0.512													4	39					0	0	1	0	0
MUC7	4589	broad.mit.edu	37	4	71347351	71347351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:71347351C>T	uc011cat.1	+	4	1178	c.890C>T	c.(889-891)TCC>TTC	p.S297F	MUC7_uc011cau.1_Missense_Mutation_p.S297F|MUC7_uc003hfj.2_Missense_Mutation_p.S297F|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	297	6.|Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			CCACCGTCTTCCCCAGCTCCA	0.557													9	84					0	0	1	0	0
MUC7	4589	broad.mit.edu	37	4	71347402	71347402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:71347402C>T	uc011cat.1	+	4	1229	c.941C>T	c.(940-942)TCC>TTC	p.S314F	MUC7_uc011cau.1_Missense_Mutation_p.S314F|MUC7_uc003hfj.2_Missense_Mutation_p.S314F|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	314	Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			CCTAATTCTTCCCCAACTACT	0.512													7	89					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71508806	71508806	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:71508806C>A	uc011caw.1	+	9	1944	c.1663C>A	c.(1663-1665)CCT>ACT	p.P555T		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	555					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AATCCCTTCTCCTGCAAAAGA	0.423													6	90					0.00198382	0.00200104	1	1	0
ENAM	10117	broad.mit.edu	37	4	71509081	71509081	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:71509081G>T	uc011caw.1	+	9	2219	c.1938G>T	c.(1936-1938)AAG>AAT	p.K646N		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	646					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			CAGACCAGAAGGAGATAGTCC	0.443													4	54					0.014758	0.0148732	1	1	0
RUFY3	22902	broad.mit.edu	37	4	71630223	71630223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:71630223C>T	uc003hfq.2	+	4	1097	c.502C>T	c.(502-504)CGT>TGT	p.R168C	RUFY3_uc003hfp.3_Missense_Mutation_p.R228C|RUFY3_uc011cax.1_Missense_Mutation_p.R186C|RUFY3_uc003hfr.2_Missense_Mutation_p.R168C|RUFY3_uc011cay.1_Missense_Mutation_p.R104C	NM_014961	NP_055776	Q7L099	RUFY3_HUMAN	RUN and FYVE domain containing 3 isoform 2	168	RUN.				negative regulation of axonogenesis	filopodium|growth cone					0		all_hematologic(202;0.248)	Lung(101;0.235)			AGCCTGGCTTCGTTTGGCATT	0.368													6	74					0	0	1	0	0
SLC4A4	8671	broad.mit.edu	37	4	72222738	72222738	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:72222738C>T	uc003hfy.2	+	6	681	c.564C>T	c.(562-564)GAC>GAT	p.D188D	SLC4A4_uc010iic.2_Silent_p.D188D|SLC4A4_uc010iib.2_Silent_p.D188D|SLC4A4_uc003hfz.2_Silent_p.D188D|SLC4A4_uc003hgc.3_Silent_p.D144D|SLC4A4_uc003hga.2_Silent_p.D66D|SLC4A4_uc003hgb.3_Silent_p.D144D	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	188	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			TGATTGTTGACCATCAGATTG	0.393													7	31					0	0	1	0	0
SLC4A4	8671	broad.mit.edu	37	4	72316208	72316208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:72316208G>A	uc003hfy.2	+	10	1273	c.1156G>A	c.(1156-1158)GAT>AAT	p.D386N	SLC4A4_uc010iic.2_Missense_Mutation_p.D386N|SLC4A4_uc010iib.2_Missense_Mutation_p.D386N|SLC4A4_uc003hfz.2_Missense_Mutation_p.D386N|SLC4A4_uc003hgc.3_Missense_Mutation_p.D342N|SLC4A4_uc010iid.2_5'UTR|SLC4A4_uc003hga.2_Missense_Mutation_p.D264N|SLC4A4_uc003hgb.3_Missense_Mutation_p.D342N	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	386	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity	p.H386L(1)		ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			TGGGGAATGGGATCCAGCAAT	0.433													3	11					0	0	1	0	0
AFP	174	broad.mit.edu	37	4	74310783	74310783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:74310783G>A	uc003hgz.1	+	7	834	c.787G>A	c.(787-789)GCC>ACC	p.A263T	AFP_uc003hha.1_Missense_Mutation_p.A263T|AFP_uc011cbg.1_Missense_Mutation_p.A37T	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	263	Albumin 2.				transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CCTGGATGTGGCCCATGTACA	0.383									Alpha-Fetoprotein_Hereditary_Persistence_of				3	25					0	0	1	0	0
AFM	173	broad.mit.edu	37	4	74351735	74351735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:74351735G>A	uc003hhb.2	+	4	458	c.427G>A	c.(427-429)GAT>AAT	p.D143N		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	143	Albumin 1.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CCCTACCCTGGATCCCGAAGA	0.383													6	20					0	0	1	0	0
THAP6	152815	broad.mit.edu	37	4	76452307	76452307	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:76452307G>A	uc003him.2	+	5	649	c.552G>A	c.(550-552)AGG>AGA	p.R184R	THAP6_uc003hin.2_Silent_p.R142R|THAP6_uc011cbm.1_Intron|THAP6_uc010iiu.1_Intron|THAP6_uc003hio.1_Intron|THAP6_uc010iiv.2_Silent_p.R184R	NM_144721	NP_653322	Q8TBB0	THAP6_HUMAN	THAP domain containing 6	184	Potential.					microtubule cytoskeleton	DNA binding|metal ion binding				0			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			AATCATTGAGGAAGACAATCA	0.398													6	27					0	0	1	0	0
THAP6	152815	broad.mit.edu	37	4	76452309	76452309	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:76452309A>G	uc003him.2	+	5	651	c.554A>G	c.(553-555)AAG>AGG	p.K185R	THAP6_uc003hin.2_Missense_Mutation_p.K143R|THAP6_uc011cbm.1_Intron|THAP6_uc010iiu.1_Intron|THAP6_uc003hio.1_Intron|THAP6_uc010iiv.2_Missense_Mutation_p.K185R	NM_144721	NP_653322	Q8TBB0	THAP6_HUMAN	THAP domain containing 6	185	Potential.					microtubule cytoskeleton	DNA binding|metal ion binding				0			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			TCATTGAGGAAGACAATCAGG	0.403													6	28					0	0	1	0	0
C4orf26	152816	broad.mit.edu	37	4	76489500	76489500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:76489500C>T	uc003hip.1	+	2	279	c.244C>T	c.(244-246)CAT>TAT	p.H82Y	C4orf26_uc011cbn.1_Intron|C4orf26_uc011cbo.1_Silent_p.S96S	NM_178497	NP_848592	Q17RF5	CD026_HUMAN	hypothetical protein LOC152816 precursor	82						extracellular region					0			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			GCCCAGAATCCATTTTAGGTT	0.512													8	97					0	0	1	0	0
PPEF2	5470	broad.mit.edu	37	4	76781888	76781888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:76781888C>T	uc003hix.2	-	17	2551	c.2194G>A	c.(2194-2196)GAT>AAT	p.D732N	PPEF2_uc003hiy.2_RNA	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	732					detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TCTGAGGCATCGCCCTCTGGG	0.512													8	34					0	0	1	0	0
PPEF2	5470	broad.mit.edu	37	4	76797800	76797800	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:76797800C>A	uc003hix.2	-	11	1317	c.960G>T	c.(958-960)ACG>ACT	p.T320T	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Silent_p.T320T	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	320	Catalytic.				detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TCTTCTGTCTCGTTTTGCACC	0.453													4	75					1	1	1	1	0
PPEF2	5470	broad.mit.edu	37	4	76809475	76809475	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:76809475G>A	uc003hix.2	-	6	781	c.424C>T	c.(424-426)CAT>TAT	p.H142Y	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Missense_Mutation_p.H142Y	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	142	Catalytic.				detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TAGCGAGCATGGAGCTGCTAC	0.473													10	52					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77661444	77661444	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:77661444G>A	uc011cbx.1	+	5	3071	c.2118G>A	c.(2116-2118)AGG>AGA	p.R706R	SHROOM3_uc011cbz.1_Silent_p.R530R|SHROOM3_uc003hkf.1_Silent_p.R581R|SHROOM3_uc003hkg.2_Silent_p.R484R	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	706					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			ACCCTGGGAGGAAAGCCGCTC	0.662													6	129					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77677740	77677740	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:77677740C>T	uc011cbx.1	+	8	5801	c.4848C>T	c.(4846-4848)TCC>TCT	p.S1616S	SHROOM3_uc003hkg.2_Silent_p.S1394S	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1616					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			CACCACCCTCCTTCATGAGCG	0.567													10	40					0	0	1	0	0
ANKRD56	345079	broad.mit.edu	37	4	77816807	77816807	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:77816807G>A	uc003hki.2	-	1	2196	c.2196C>T	c.(2194-2196)TTC>TTT	p.F732F		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	732											0						GATAGACAGGGAAAATGGGCT	0.502													21	276					0	0	1	0	0
ANKRD56	345079	broad.mit.edu	37	4	77817214	77817214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:77817214C>T	uc003hki.2	-	1	1789	c.1789G>A	c.(1789-1791)GAG>AAG	p.E597K		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	597											0						CACTCATGCTCCCTGGCATCT	0.567													10	41					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79207685	79207685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:79207685C>T	uc003hlb.2	+	14	1966	c.1526C>T	c.(1525-1527)TCC>TTC	p.S509F	FRAS1_uc003hkw.2_Missense_Mutation_p.S509F|FRAS1_uc003hky.1_Missense_Mutation_p.S213F|FRAS1_uc003hkz.2_Missense_Mutation_p.S213F|FRAS1_uc003hla.1_Missense_Mutation_p.S20F	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	509	FU 3.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GATCGCCATTCCTGTGCAGGT	0.622													4	47					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79236828	79236828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:79236828G>A	uc003hlb.2	+	16	2199	c.1759G>A	c.(1759-1761)GGG>AGG	p.G587R	FRAS1_uc003hkw.2_Missense_Mutation_p.G587R|FRAS1_uc003hky.1_Missense_Mutation_p.G291R|FRAS1_uc003hkz.2_Missense_Mutation_p.G291R|FRAS1_uc003hla.1_Missense_Mutation_p.G98R	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	587	FU 4.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GCTGCATGATGGGAAATGCAT	0.502													4	42					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79308779	79308779	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:79308779C>G	uc003hlb.2	+	29	4339	c.3899C>G	c.(3898-3900)TCC>TGC	p.S1300C	FRAS1_uc003hkw.2_Missense_Mutation_p.S1300C	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1299	CSPG 2.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GACAGCACATCCGATGTTGCA	0.488													7	28					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79366681	79366681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:79366681C>T	uc003hlb.2	+	42	6111	c.5671C>T	c.(5671-5673)CGT>TGT	p.R1891C	FRAS1_uc003hkw.2_Missense_Mutation_p.R1891C|FRAS1_uc010ijj.1_Missense_Mutation_p.R311C	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1890	CSPG 7.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TGCAGGTGATCGTTTTGGCCC	0.393													5	34					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79462079	79462079	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:79462079C>T	uc003hlb.2	+	74	12280	c.11840C>T	c.(11839-11841)CCT>CTT	p.P3947L		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3942	Cytoplasmic (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GAAGAATATCCTCTGAATACC	0.478													8	46					0	0	1	0	0
ANTXR2	118429	broad.mit.edu	37	4	80899225	80899225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:80899225G>A	uc003hlz.3	-	15	2046	c.1283C>T	c.(1282-1284)CCT>CTT	p.P428L	ANTXR2_uc003hly.3_Missense_Mutation_p.P428L|ANTXR2_uc003hlx.1_RNA|ANTXR2_uc010ijn.2_Missense_Mutation_p.P325L	NM_001145794	NP_001139266	P58335	ANTR2_HUMAN	anthrax toxin receptor 2 isoform 2	428	Cytoplasmic (Potential).					endoplasmic reticulum membrane|extracellular region|integral to membrane|plasma membrane	metal ion binding|protein binding|receptor activity			ovary(1)	1						AGGTGGTCTAGGCCTGATGGG	0.463									Juvenile_Hyaline_Fibromatosis				7	63					0	0	1	0	0
PRDM8	56978	broad.mit.edu	37	4	81123235	81123235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:81123235G>A	uc010ijo.2	+	8	1458	c.619G>A	c.(619-621)GGC>AGC	p.G207S	PRDM8_uc003hmb.3_Missense_Mutation_p.G207S|PRDM8_uc003hmc.3_Missense_Mutation_p.G207S	NM_020226	NP_064611	Q9NQV8	PRDM8_HUMAN	PR domain containing 8	207	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						gggcggcggcggcggtggcaa	0.378											OREG0016246	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	66					0	0	1	0	0
PRDM8	56978	broad.mit.edu	37	4	81123450	81123450	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:81123450C>T	uc010ijo.2	+	8	1673	c.834C>T	c.(832-834)TCC>TCT	p.S278S	PRDM8_uc003hmb.3_Silent_p.S278S|PRDM8_uc003hmc.3_Silent_p.S278S	NM_020226	NP_064611	Q9NQV8	PRDM8_HUMAN	PR domain containing 8	278	Gly-rich.|Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GCAGCTGCTCCCCAGCCCAGA	0.587											OREG0016246	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	32					0	0	1	0	0
PRKG2	5593	broad.mit.edu	37	4	82074833	82074833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:82074833C>T	uc003hmh.2	-	6	969	c.955G>A	c.(955-957)GAA>AAA	p.E319K	PRKG2_uc011ccf.1_5'UTR|PRKG2_uc011ccg.1_5'UTR|PRKG2_uc011cch.1_Missense_Mutation_p.E319K	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	319	cGMP 2.				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						GTACTTCCTTCCTCGCCCTCT	0.279													4	20					0	0	1	0	0
PRKG2	5593	broad.mit.edu	37	4	82125844	82125844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:82125844C>T	uc003hmh.2	-	1	372	c.358G>A	c.(358-360)GGA>AGA	p.G120R	PRKG2_uc011cch.1_Missense_Mutation_p.G120R	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	120					platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						GCCTTTGCTCCCCTCCTGCTA	0.537													15	55					0	0	1	0	0
SEC31A	22872	broad.mit.edu	37	4	83750184	83750184	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:83750184G>A	uc003hnf.2	-	23	3160	c.2996C>T	c.(2995-2997)CCA>CTA	p.P999L	SEC31A_uc003hnd.2_Missense_Mutation_p.P168L|SEC31A_uc003hne.2_Missense_Mutation_p.P748L|SEC31A_uc011ccl.1_Missense_Mutation_p.P945L|SEC31A_uc003hnl.2_Missense_Mutation_p.P846L|SEC31A_uc003hng.2_Missense_Mutation_p.P984L|SEC31A_uc003hnh.2_Missense_Mutation_p.P999L|SEC31A_uc003hni.2_Missense_Mutation_p.P885L|SEC31A_uc003hnj.2_Missense_Mutation_p.P960L|SEC31A_uc011ccm.1_Missense_Mutation_p.P979L|SEC31A_uc011ccn.1_Missense_Mutation_p.P984L|SEC31A_uc003hnk.2_Missense_Mutation_p.P960L|SEC31A_uc003hnm.2_Missense_Mutation_p.P999L	NM_001077207	NP_001070675	O94979	SC31A_HUMAN	SEC31 homolog A isoform 1	999	Interaction with PDCD6.|Pro-rich.				COPII vesicle coating|post-translational protein modification|protein N-linked glycosylation via asparagine|protein transport|response to calcium ion	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|perinuclear region of cytoplasm	calcium-dependent protein binding		SEC31A/JAK2(4)|SEC31A/ALK(3)	haematopoietic_and_lymphoid_tissue(4)|soft_tissue(3)|breast(1)	8		Hepatocellular(203;0.114)				GTTCAAAGCTGGAGGGTCATT	0.388													9	24					0	0	1	0	0
HPSE	10855	broad.mit.edu	37	4	84234385	84234386	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:84234385_84234386GA>AT	uc003hoj.3	-	4	653_654	c.554_555TC>AT	c.(553-555)ATC>AAT	p.I185N	HPSE_uc010ika.2_Intron|HPSE_uc011ccq.1_RNA|HPSE_uc011ccr.1_RNA|HPSE_uc011ccs.1_Intron|HPSE_uc011cct.1_Missense_Mutation_p.I185N|HPSE_uc003hok.3_Missense_Mutation_p.I185N	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor	185					carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	TTAGGCCAAAGATCAAGTCCAG	0.406													4	50					0	0	1	0	0
WDFY3	23001	broad.mit.edu	37	4	85617227	85617227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:85617227G>A	uc003hpd.2	-	58	9205	c.8797C>T	c.(8797-8799)CAT>TAT	p.H2933Y	WDFY3_uc003hpe.1_Missense_Mutation_p.H544Y	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	2933	BEACH.					cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		TAAAAAAGATGATGGAAGACA	0.418													12	46					0	0	1	0	0
SLC10A6	345274	broad.mit.edu	37	4	87746591	87746591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:87746591C>T	uc003hqd.2	-	5	1049	c.901G>A	c.(901-903)GGA>AGA	p.G301R		NM_197965	NP_932069	Q3KNW5	SOAT_HUMAN	sodium-dependent organic anion transporter	301	Helical; (Potential).					integral to membrane|plasma membrane	bile acid:sodium symporter activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.00099)		ATAAGAAATCCATCTATCAGC	0.443													4	37					0	0	1	0	0
AFF1	4299	broad.mit.edu	37	4	88035909	88035909	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:88035909C>T	uc003hqj.3	+	11	2310	c.1903C>T	c.(1903-1905)CGA>TGA	p.R635*	AFF1_uc011ccz.1_Nonsense_Mutation_p.R642*|AFF1_uc003hqk.3_Nonsense_Mutation_p.R635*|AFF1_uc011cda.1_Nonsense_Mutation_p.R273*	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	635						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		CTATGGCTCCCGAGACCAGAC	0.612													5	51					0	0	1	0	0
DMP1	1758	broad.mit.edu	37	4	88584106	88584106	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:88584106C>T	uc003hqv.2	+	6	1280	c.1176C>T	c.(1174-1176)CTC>CTT	p.L392L	DMP1_uc003hqw.2_Silent_p.L376L	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	392					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		CGCACACACTCTCCCACTCAA	0.542													10	77					0	0	1	0	0
MEPE	56955	broad.mit.edu	37	4	88767531	88767531	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:88767531C>T	uc003hqy.2	+	4	1550	c.1511C>T	c.(1510-1512)TCC>TTC	p.S504F	MEPE_uc010ikn.2_Missense_Mutation_p.S391F	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	504					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		AGGTTTAGTTCCCGTAGAAGG	0.507													7	42					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	88813477	88813477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:88813477G>A	uc010iko.1	+	2	421	c.421G>A	c.(421-423)GGA>AGA	p.G141R						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		GTCTTCTGCTGGAGGTTCCTT	0.468													6	38					0	0	1	0	0
ABCG2	9429	broad.mit.edu	37	4	89015796	89015796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:89015796C>T	uc003hrg.2	-	15	2246	c.1753G>A	c.(1753-1755)GAA>AAA	p.E585K	ABCG2_uc003hrh.2_Missense_Mutation_p.M581I|ABCG2_uc003hrf.2_Missense_Mutation_p.E453K	NM_004827	NP_004818	Q9UNQ0	ABCG2_HUMAN	ATP-binding cassette, sub-family G, member 2	585	ABC transmembrane type-2.|Extracellular (Potential).				cellular iron ion homeostasis|urate metabolic process	integral to membrane|plasma membrane	ATP binding|heme transporter activity|protein homodimerization activity|xenobiotic-transporting ATPase activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.02e-05)	Imatinib(DB00619)|Mitoxantrone(DB01204)|Nicardipine(DB00622)|Nitrendipine(DB01054)|Rosuvastatin(DB01098)|Saquinavir(DB01232)|Topotecan(DB01030)	CCCAAAAATTCATTATGCTGC	0.388													12	21					0	0	1	0	0
ABCG2	9429	broad.mit.edu	37	4	89022423	89022423	+	Silent	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:89022423A>C	uc003hrg.2	-	11	1819	c.1326T>G	c.(1324-1326)GTT>GTG	p.V442V	ABCG2_uc003hrh.2_Silent_p.V442V|ABCG2_uc003hrf.2_Silent_p.V310V	NM_004827	NP_004818	Q9UNQ0	ABCG2_HUMAN	ATP-binding cassette, sub-family G, member 2	442	ABC transmembrane type-2.|Helical; (Potential).				cellular iron ion homeostasis|urate metabolic process	integral to membrane|plasma membrane	ATP binding|heme transporter activity|protein homodimerization activity|xenobiotic-transporting ATPase activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.02e-05)	Imatinib(DB00619)|Mitoxantrone(DB01204)|Nicardipine(DB00622)|Nitrendipine(DB01054)|Rosuvastatin(DB01098)|Saquinavir(DB01232)|Topotecan(DB01030)	CCACGGCTGAAACACTGCTGA	0.507													3	30					0	0	1	0	0
FAM190A	401145	broad.mit.edu	37	4	91230397	91230397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:91230397C>T	uc003hsv.3	+	2	1302	c.962C>T	c.(961-963)CCT>CTT	p.P321L	FAM190A_uc003hsu.3_Missense_Mutation_p.P321L|FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Missense_Mutation_p.P321L	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	321										large_intestine(1)|ovary(1)	2						ATTATGTCTCCTGGGAAATAT	0.418													7	22					0	0	1	0	0
PDLIM5	10611	broad.mit.edu	37	4	95497136	95497136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:95497136G>A	uc003hti.2	+	5	812	c.661G>A	c.(661-663)GCA>ACA	p.A221T	PDLIM5_uc003htf.2_Intron|PDLIM5_uc003htg.2_Missense_Mutation_p.A112T|PDLIM5_uc011cdx.1_Missense_Mutation_p.A112T|PDLIM5_uc003hth.2_Missense_Mutation_p.A112T|PDLIM5_uc003htj.2_Intron|PDLIM5_uc003htk.2_Missense_Mutation_p.A112T|PDLIM5_uc011cdy.1_Missense_Mutation_p.A99T	NM_006457	NP_006448	Q96HC4	PDLI5_HUMAN	PDZ and LIM domain 5 isoform a	221					regulation of dendritic spine morphogenesis|regulation of synaptogenesis	actin cytoskeleton|cell junction|cytosol|postsynaptic density|postsynaptic membrane|synaptosome	actin binding|actinin binding|protein kinase C binding|zinc ion binding			ovary(1)|skin(1)	2		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.84e-09)		TCAGGAGCTAGCAGAGGGACA	0.507													5	21					0	0	1	0	0
C4orf37	285555	broad.mit.edu	37	4	98893493	98893493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:98893493G>A	uc003htt.1	-	7	961	c.871C>T	c.(871-873)CCT>TCT	p.P291S		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	291											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		AAAGTCCGAGGAACAGAAGAA	0.358													4	41					0	0	1	0	0
METAP1	23173	broad.mit.edu	37	4	99969997	99969997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:99969997C>T	uc003huf.3	+	9	1018	c.901C>T	c.(901-903)CAT>TAT	p.H301Y	METAP1_uc003hug.2_RNA|METAP1_uc010ild.2_Intron	NM_015143	NP_055958	P53582	AMPM1_HUMAN	methionyl aminopeptidase 1	301		Substrate.			N-terminal protein amino acid modification|peptidyl-methionine modification|proteolysis|regulation of translation	cytoplasm	aminopeptidase activity|metal ion binding|metalloexopeptidase activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(123;3.12e-07)		CAAGCTTTTTCATACAGCTCC	0.388													7	62					0	0	1	0	0
ADH1A	124	broad.mit.edu	37	4	100208036	100208036	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:100208036A>G	uc003hur.1	-	3	301	c.230T>C	c.(229-231)GTT>GCT	p.V77A	uc003hum.1_RNA|ADH1A_uc011ceg.1_Missense_Mutation_p.V77A|ADH1A_uc010ilf.1_5'Flank|ADH1A_uc010ilg.1_Missense_Mutation_p.V77A	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	77					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	CCCTTCTCCAACACTCTCCAC	0.478													23	97					0	0	1	0	0
ADH1B	125	broad.mit.edu	37	4	100235009	100235009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:100235009G>A	uc003hus.3	-	6	881	c.797C>T	c.(796-798)TCG>TTG	p.S266L	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.S226L|ADH1B_uc011ceh.1_Missense_Mutation_p.S111L|ADH1B_uc011cei.1_Missense_Mutation_p.S226L	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	266					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	GACTTCAAACGAAAAATCCAC	0.463													4	74					0	0	1	0	0
ADH1B	125	broad.mit.edu	37	4	100239237	100239237	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:100239237C>T	uc003hus.3	-	3	309	c.225G>A	c.(223-225)GAG>GAA	p.E75E	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Silent_p.E35E|ADH1B_uc011ceh.1_5'UTR|ADH1B_uc011cei.1_Silent_p.E35E	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	75					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	CTCCAACACTCTCCACGATGC	0.537													5	47					0	0	1	0	0
ADH1C	126	broad.mit.edu	37	4	100266094	100266094	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:100266094G>A	uc003huu.2	-	7	577	c.492C>T	c.(490-492)GCC>GCT	p.A164A		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	164					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	CCAGGGGCGAGGCTGCATCAA	0.517									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				5	46					0	0	1	0	0
ADH1C	126	broad.mit.edu	37	4	100266210	100266210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:100266210C>T	uc003huu.2	-	7	461	c.376G>A	c.(376-378)GAT>AAT	p.D126N		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	126					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	CTGGTGCCATCCTGCAGGGTC	0.552									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				4	21					0	0	1	0	0
ADH7	131	broad.mit.edu	37	4	100349074	100349074	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:100349074G>A	uc003huv.1	-	5	555	c.456C>T	c.(454-456)TTC>TTT	p.F152F		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	152					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	TGGTGTTCATGAAGTGGTGGA	0.433													3	12					0	0	1	0	0
C4orf17	84103	broad.mit.edu	37	4	100434256	100434256	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:100434256G>A	uc003huw.2	+	2	341	c.18G>A	c.(16-18)CCG>CCA	p.P6P	C4orf17_uc003hux.2_RNA	NM_032149	NP_115525	Q53FE4	CD017_HUMAN	hypothetical protein LOC84103	6											0				OV - Ovarian serous cystadenocarcinoma(123;2.08e-08)		TCAACCCCCCGACATCTGCTC	0.473													14	16					0	0	1	0	0
SLC39A8	64116	broad.mit.edu	37	4	103189035	103189035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:103189035C>T	uc003hwb.1	-	6	1571	c.1042G>A	c.(1042-1044)GAG>AAG	p.E348K	SLC39A8_uc011ceo.1_Missense_Mutation_p.E348K|SLC39A8_uc003hwa.1_Missense_Mutation_p.E281K|SLC39A8_uc003hwc.2_Missense_Mutation_p.E348K	NM_022154	NP_071437	Q9C0K1	S39A8_HUMAN	solute carrier family 39 (zinc transporter),	348	Cytoplasmic (Potential).|XEXPHE-motif.					integral to membrane|organelle membrane|plasma membrane	zinc ion transmembrane transporter activity				0		Hepatocellular(203;0.217)		all cancers(1;9.78e-10)|OV - Ovarian serous cystadenocarcinoma(123;1.52e-09)|GBM - Glioblastoma multiforme(1;0.000142)		TTACCTAACTCGTGGGGAAAC	0.448													4	12					0	0	1	0	0
GSTCD	79807	broad.mit.edu	37	4	106640287	106640287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:106640287C>T	uc003hxz.3	+	3	569	c.497C>T	c.(496-498)TCT>TTT	p.S166F	GSTCD_uc003hxx.2_Missense_Mutation_p.S166F|GSTCD_uc003hxy.3_Missense_Mutation_p.S79F|GSTCD_uc011cfb.1_Intron|GSTCD_uc010ils.1_Missense_Mutation_p.S166F	NM_001031720	NP_001026890	Q8NEC7	GSTCD_HUMAN	glutathione S-transferase, C-terminal domain	166	GST C-terminal.					cytoplasm	rRNA methyltransferase activity			breast(1)|central_nervous_system(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.15e-07)|READ - Rectum adenocarcinoma(30;0.139)		AGAGAATCTTCTGACCAGCCC	0.408													7	32					0	0	1	0	0
DKK2	27123	broad.mit.edu	37	4	107956591	107956591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:107956591C>T	uc003hyi.2	-	1	863	c.158G>A	c.(157-159)CGA>CAA	p.R53Q	DKK2_uc010ilw.1_Intron|DKK2_uc003hyj.1_Missense_Mutation_p.R53Q	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	53					multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		GCCCGCAGATCGATTGGCGGC	0.577													15	63					0	0	1	0	0
AGXT2L1	64850	broad.mit.edu	37	4	109670409	109670409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:109670409C>T	uc003hzc.2	-	8	1093	c.912G>A	c.(910-912)ATG>ATA	p.M304I	AGXT2L1_uc010imc.2_Missense_Mutation_p.M298I|AGXT2L1_uc011cfm.1_Missense_Mutation_p.M264I|AGXT2L1_uc011cfn.1_Missense_Mutation_p.M231I|AGXT2L1_uc011cfo.1_Missense_Mutation_p.M246I	NM_031279	NP_112569	Q8TBG4	AT2L1_HUMAN	alanine-glyoxylate aminotransferase 2-like 1	304					cellular amino acid metabolic process	mitochondrion	alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000281)		TAAAATATTCCATCCCAGAGC	0.403													3	34					0	0	1	0	0
LRIT3	345193	broad.mit.edu	37	4	110791708	110791708	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:110791708C>T	uc003hzx.3	+	3	1861	c.1668C>T	c.(1666-1668)TTC>TTT	p.F556F	LRIT3_uc003hzw.3_Silent_p.F418F	NM_198506	NP_940908	Q3SXY7	LRIT3_HUMAN	leucine-rich repeat, immunoglobulin-like and	556	Helical; (Potential).					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;0.0011)		TGATTTGTTTCTTGTTGTACA	0.393													6	39					0	0	1	0	0
EGF	1950	broad.mit.edu	37	4	110932392	110932392	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:110932392C>T	uc003hzy.3	+	24	3857	c.3405C>T	c.(3403-3405)CCC>CCT	p.P1135P	EGF_uc011cfu.1_Silent_p.P1093P|EGF_uc011cfv.1_Silent_p.P1094P|EGF_uc010imk.2_Missense_Mutation_p.P257L	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	1135	Cytoplasmic (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	GGCAGGAGCCCCAGTTATGTG	0.453													10	30					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111397658	111397658	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:111397658G>A	uc003iab.3	+	1	430	c.88G>A	c.(88-90)GGA>AGA	p.G30R		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	30	Helical; Signal-anchor for type II membrane protein; (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	GGTGGGTGTAGGATTAATAGT	0.557													9	155					0	0	1	0	0
C4orf21	55345	broad.mit.edu	37	4	113510993	113510993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:113510993G>A	uc003iau.2	-	11	3225	c.3014C>T	c.(3013-3015)CCT>CTT	p.P1005L	C4orf21_uc003iav.2_5'Flank|C4orf21_uc003iaw.2_Missense_Mutation_p.P1005L	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		GGTAGAAACAGGGCTCAATGT	0.353													4	23					0	0	1	0	0
C4orf21	55345	broad.mit.edu	37	4	113539774	113539774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:113539774G>A	uc003iau.2	-	6	1635	c.1424C>T	c.(1423-1425)TCA>TTA	p.S475L	C4orf21_uc003iaw.2_Missense_Mutation_p.S475L	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		AGATGACTCTGATTGTTCATA	0.353													6	53					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114214640	114214640	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:114214640C>T	uc003ibe.3	+	22	2521	c.2421C>T	c.(2419-2421)ATC>ATT	p.I807I	ANK2_uc003ibd.3_Silent_p.I786I|ANK2_uc003ibf.3_Silent_p.I807I|ANK2_uc011cgc.1_Silent_p.I16I|ANK2_uc003ibc.2_Silent_p.I783I|ANK2_uc011cgb.1_Silent_p.I822I	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	807	ANK 24.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TGGGCTACATCTCCGTGGTCG	0.423													9	32					0	0	1	0	0
ARSJ	79642	broad.mit.edu	37	4	114824625	114824625	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:114824625C>T	uc003ibq.1	-	2	1493	c.605G>A	c.(604-606)GGA>GAA	p.G202E	ARSJ_uc010imu.1_Missense_Mutation_p.G202E|ARSJ_uc010imv.1_Missense_Mutation_p.G30E	NM_024590	NP_078866	Q5FYB0	ARSJ_HUMAN	arylsulfatase J precursor	202						extracellular region	arylsulfatase activity|metal ion binding			ovary(1)	1		Ovarian(17;0.0035)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00194)		ATCCCCACTTCCCAAAAGGGA	0.433													6	98					0	0	1	0	0
ARSJ	79642	broad.mit.edu	37	4	114899620	114899621	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:114899620_114899621GG>AA	uc003ibq.1	-	1	1258_1259	c.370_371CC>TT	c.(370-372)CCA>TTA	p.P124L	ARSJ_uc010imu.1_Missense_Mutation_p.P124L|ARSJ_uc010imv.1_5'UTR	NM_024590	NP_078866	Q5FYB0	ARSJ_HUMAN	arylsulfatase J precursor	124						extracellular region	arylsulfatase activity|metal ion binding			ovary(1)	1		Ovarian(17;0.0035)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00194)		ACTCCTGGATGGTGTGCAAATA	0.401													9	49					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115891597	115891597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:115891597C>T	uc003ibu.2	-	4	1889	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	404	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		AGTGCAAATTCCTTGTTGAGA	0.408													3	11					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119810202	119810202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:119810202G>A	uc003icm.3	+	1	207	c.11G>A	c.(10-12)GGG>GAG	p.G4E	SYNPO2_uc010ina.2_Missense_Mutation_p.G4E|SYNPO2_uc010inb.2_Missense_Mutation_p.G4E|SYNPO2_uc011cgh.1_Missense_Mutation_p.G4E	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	4						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						ATGGGCACAGGGGATTTTATC	0.547													6	71					0	0	1	0	0
USP53	54532	broad.mit.edu	37	4	120182982	120182982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:120182982C>T	uc003ics.3	+	11	2001	c.935C>T	c.(934-936)TCC>TTC	p.S312F	USP53_uc003icr.3_Missense_Mutation_p.S312F|USP53_uc003icu.3_5'UTR	NM_019050	NP_061923	Q70EK8	UBP53_HUMAN	ubiquitin specific protease 53	312					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			ovary(1)|breast(1)|kidney(1)|skin(1)	4						ACCAAAAGTTCCAAATGGGTA	0.313													4	33					0	0	1	0	0
PRDM5	11107	broad.mit.edu	37	4	121774621	121774621	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:121774621G>A	uc003idn.2	-	3	502	c.252C>T	c.(250-252)TTC>TTT	p.F84F	PRDM5_uc003ido.2_Silent_p.F84F|PRDM5_uc010ine.2_Silent_p.F84F|PRDM5_uc010inf.2_Silent_p.F84F|PRDM5_uc003idp.1_Silent_p.F84F	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	84	SET.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						CCTCATGAACGAAGCGAAGCC	0.468													18	139					0	0	1	0	0
PRDM5	11107	broad.mit.edu	37	4	121774692	121774692	+	Missense_Mutation	SNP	G	A	A	rs142855444		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:121774692G>A	uc003idn.2	-	3	431	c.181C>T	c.(181-183)CGT>TGT	p.R61C	PRDM5_uc003ido.2_Missense_Mutation_p.R61C|PRDM5_uc010ine.2_Missense_Mutation_p.R61C|PRDM5_uc010inf.2_Missense_Mutation_p.R61C|PRDM5_uc003idp.1_Missense_Mutation_p.R61C	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	61	SET.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						TTACTCCCACGAACCTGAAAC	0.423													4	59					0	0	1	0	0
EXOSC9	5393	broad.mit.edu	37	4	122722619	122722619	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:122722619C>T	uc003iea.2	+	1	148	c.40C>T	c.(40-42)CTA>TTA	p.L14L	EXOSC9_uc003idz.2_Silent_p.L14L|EXOSC9_uc003ieb.2_5'Flank	NM_005033	NP_005024	Q06265	EXOS9_HUMAN	exosome component 9 isoform 2	14	ARE binding.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|immune response|nuclear mRNA surveillance|nuclear polyadenylation-dependent rRNA catabolic process|positive regulation of cell growth|rRNA processing	cytosol|nuclear exosome (RNase complex)|nucleolus|nucleolus|nucleus	3'-5'-exoribonuclease activity|AU-rich element binding|protein binding				0						ACGCCGCTTCCTACTCCGTGC	0.592													15	57					0	0	1	0	0
TRPC3	7222	broad.mit.edu	37	4	122853481	122853481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:122853481G>A	uc003ieg.2	-	2	1006	c.932C>T	c.(931-933)GCC>GTC	p.A311V	TRPC3_uc010inr.2_Missense_Mutation_p.A238V|TRPC3_uc003ief.2_Missense_Mutation_p.A238V|TRPC3_uc011cgl.1_5'UTR	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	226	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GAGCTCTAGGGCCGTAAGCAC	0.597													4	21					0	0	1	0	0
KIAA1109	84162	broad.mit.edu	37	4	123107241	123107241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:123107241C>T	uc003ieh.2	+	5	454	c.409C>T	c.(409-411)CAT>TAT	p.H137Y	KIAA1109_uc003iei.1_5'UTR	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	137					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						CTTTGAATTTCATGTCTATAA	0.353													7	15					0	0	1	0	0
KIAA1109	84162	broad.mit.edu	37	4	123159367	123159367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:123159367C>T	uc003ieh.2	+	26	3740	c.3695C>T	c.(3694-3696)TCC>TTC	p.S1232F	KIAA1109_uc003iei.1_Missense_Mutation_p.S985F|KIAA1109_uc010ins.1_Missense_Mutation_p.S575F|KIAA1109_uc003iek.2_5'Flank	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	1232	Poly-Ser.				regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TCATCCTCTTCCTCAGAAGAG	0.413													7	37					0	0	1	0	0
KIAA1109	84162	broad.mit.edu	37	4	123271120	123271120	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:123271120C>T	uc003ieh.2	+	78	13785	c.13740C>T	c.(13738-13740)TTC>TTT	p.F4580F	KIAA1109_uc003iem.2_Silent_p.F936F	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4580					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AGGAATTTTTCACACAACAAT	0.413													4	18					0	0	1	0	0
ADAD1	132612	broad.mit.edu	37	4	123302238	123302238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:123302238G>A	uc003ieo.2	+	4	496	c.264G>A	c.(262-264)ATG>ATA	p.M88I	ADAD1_uc003iep.2_Missense_Mutation_p.M88I|ADAD1_uc003ieq.2_Missense_Mutation_p.M70I	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	88					multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						AATTTATAATGAAATACAAAC	0.388													14	60					0	0	1	0	0
FGF2	2247	broad.mit.edu	37	4	123748449	123748449	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:123748449C>T	uc003iev.1	+	1	587	c.519C>T	c.(517-519)TTC>TTT	p.F173F		NM_002006	NP_001997	P09038	FGF2_HUMAN	fibroblast growth factor 2	173					activation of MAPK activity|branching involved in ureteric bud morphogenesis|cell migration involved in sprouting angiogenesis|chemotaxis|chondroblast differentiation|embryonic morphogenesis|fibroblast growth factor receptor signaling pathway|inositol phosphate biosynthetic process|insulin receptor signaling pathway|negative regulation of blood vessel endothelial cell migration|negative regulation of cell death|organ morphogenesis|phosphatidylinositol biosynthetic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of cardiac muscle cell proliferation|positive regulation of cell division|positive regulation of cell fate specification|positive regulation of ERK1 and ERK2 cascade|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of phospholipase C activity|Ras protein signal transduction|release of sequestered calcium ion into cytosol|wound healing	extracellular space	fibroblast growth factor receptor binding|growth factor activity|heparin binding|ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|lung(1)|central_nervous_system(1)	3					Pentosan Polysulfate(DB00686)	GGGGCTTCTTCCTGCGCATCC	0.672													6	30					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126238432	126238432	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:126238432T>C	uc003ifj.3	+	1	866	c.866T>C	c.(865-867)CTG>CCG	p.L289P		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	289	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CGCTATCGCCTGCAGGACGAG	0.677											OREG0016317	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	39					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126372516	126372516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:126372516G>A	uc003ifj.3	+	9	10345	c.10345G>A	c.(10345-10347)GAA>AAA	p.E3449K	FAT4_uc011cgp.1_Missense_Mutation_p.E1747K|FAT4_uc003ifi.1_Missense_Mutation_p.E927K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3449	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						ATCAGGGAATGAAAATGGTGC	0.463													5	20					0	0	1	0	0
SLC25A31	83447	broad.mit.edu	37	4	128651718	128651718	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:128651718G>A	uc003ifl.2	+	1	164	c.18G>A	c.(16-18)GCG>GCA	p.A6A		NM_031291	NP_112581	Q9H0C2	ADT4_HUMAN	solute carrier family 25 (mitochondrial carrier;	6					transmembrane transport	cilium|flagellum|integral to membrane|mitochondrial inner membrane	binding|transporter activity				0						GTGAGCCTGCGAAAAAGAAGG	0.552													8	50					0	0	1	0	0
PLK4	10733	broad.mit.edu	37	4	128814468	128814468	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:128814468C>T	uc003ifo.2	+	11	2462	c.2217C>T	c.(2215-2217)TTC>TTT	p.F739F	PLK4_uc011cgs.1_Silent_p.F707F|PLK4_uc011cgt.1_Silent_p.F698F	NM_014264	NP_055079	O00444	PLK4_HUMAN	polo-like kinase 4	739					G2/M transition of mitotic cell cycle|positive regulation of centriole replication|trophoblast giant cell differentiation	centriole|cleavage furrow|cytosol|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						CAGAAGATTTCATTCAGGTGA	0.274													4	28					0	0	1	0	0
PCDH10	57575	broad.mit.edu	37	4	134072602	134072602	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:134072602G>A	uc003iha.2	+	1	2133	c.1307G>A	c.(1306-1308)CGG>CAG	p.R436Q	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.R436Q	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	436	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		GTAGTGGCTCGGGACCGGGGC	0.597													22	169					0	0	1	0	0
PCDH10	57575	broad.mit.edu	37	4	134073098	134073098	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:134073098C>T	uc003iha.2	+	1	2629	c.1803C>T	c.(1801-1803)ACC>ACT	p.T601T	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Silent_p.T601T	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	601	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		ACCTGCTCACCCGCGTGGCCG	0.677													8	42					0	0	1	0	0
PCDH10	57575	broad.mit.edu	37	4	134076145	134076145	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:134076145G>A	uc003iha.2	+	3	3590	c.2764G>A	c.(2764-2766)GAT>AAT	p.D922N		NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	922	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		GGGAGATAGTGATCATGATGC	0.398													4	68					0	0	1	0	0
MAML3	55534	broad.mit.edu	37	4	140640629	140640629	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:140640629G>A	uc003ihz.1	-	7	4002	c.3250C>T	c.(3250-3252)CCT>TCT	p.P1084S	MGST2_uc010ioi.1_Intron|MAML3_uc011chd.1_Missense_Mutation_p.P552S	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	1085					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					ACGTCCTGAGGGGCATTCCGC	0.617													4	61					0	0	1	0	0
MAML3	55534	broad.mit.edu	37	4	140810649	140810649	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:140810649C>T	uc003ihz.1	-	3	2681	c.1929G>A	c.(1927-1929)CAG>CAA	p.Q643Q	MAML3_uc011chd.1_Intron	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	643	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					gctgctgctgctgctgctgct	0.408													5	47					0	0	1	0	0
CLGN	1047	broad.mit.edu	37	4	141320084	141320084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:141320084C>T	uc011chi.1	-	9	1023	c.805G>A	c.(805-807)GAT>AAT	p.D269N	CLGN_uc003iii.2_Missense_Mutation_p.D269N	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	269	Lumenal (Potential).|1-1.				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					TCATTGGGATCTTCAATTTCT	0.408													5	87					0	0	1	0	0
CLGN	1047	broad.mit.edu	37	4	141331012	141331012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:141331012C>T	uc011chi.1	-	5	474	c.256G>A	c.(256-258)GAG>AAG	p.E86K	CLGN_uc003iii.2_Missense_Mutation_p.E86K	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	86	Lumenal (Potential).				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					GAAATTTCCTCATCCATGTCA	0.274													5	56					0	0	1	0	0
GAB1	2549	broad.mit.edu	37	4	144354782	144354782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:144354782C>T	uc003ije.2	+	3	865	c.506C>T	c.(505-507)CCA>CTA	p.P169L	GAB1_uc003ijd.2_Missense_Mutation_p.P169L|GAB1_uc011chq.1_Missense_Mutation_p.P66L	NM_002039	NP_002030	Q13480	GAB1_HUMAN	GRB2-associated binding protein 1 isoform b	169					cell proliferation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			breast(2)|lung(1)|skin(1)	4	all_hematologic(180;0.158)					AATGTTCCACCACACCTGGAA	0.453													9	28					0	0	1	0	0
GAB1	2549	broad.mit.edu	37	4	144381637	144381637	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:144381637C>T	uc003ije.2	+	8	2159	c.1800C>T	c.(1798-1800)GAC>GAT	p.D600D	GAB1_uc003ijd.2_Silent_p.D630D|GAB1_uc011chq.1_Silent_p.D497D	NM_002039	NP_002030	Q13480	GAB1_HUMAN	GRB2-associated binding protein 1 isoform b	600					cell proliferation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			breast(2)|lung(1)|skin(1)	4	all_hematologic(180;0.158)					CCAGTGAAGACCCAGTATGTA	0.418													4	61					0	0	1	0	0
MMAA	166785	broad.mit.edu	37	4	146576365	146576365	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:146576365C>T	uc003ikh.3	+	7	1121	c.1036C>T	c.(1036-1038)CAG>TAG	p.Q346*	MMAA_uc010iow.2_RNA	NM_172250	NP_758454	Q8IVH4	MMAA_HUMAN	methylmalonic aciduria type A precursor	346						mitochondrion	GTP binding|nucleoside-triphosphatase activity			ovary(1)	1	all_hematologic(180;0.151)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GAAAGATTTCCAGGACCTAAT	0.438													6	54					0	0	1	0	0
ZNF827	152485	broad.mit.edu	37	4	146686877	146686877	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:146686877C>T	uc003ikn.2	-	12	2922	c.2874G>A	c.(2872-2874)AAG>AAA	p.K958K	ZNF827_uc003ikm.2_Silent_p.K958K|ZNF827_uc010iox.2_Silent_p.K608K|ZNF827_uc003ikl.2_Silent_p.K43K	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	958					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					CGCTGGGGGTCTTCCTGTCTT	0.453													4	64					0	0	1	0	0
ZNF827	152485	broad.mit.edu	37	4	146824107	146824107	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:146824107A>T	uc003ikn.2	-	2	352	c.304T>A	c.(304-306)TCC>ACC	p.S102T	ZNF827_uc003ikm.2_Missense_Mutation_p.S102T|ZNF827_uc010iox.2_Intron	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	102					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					ACTCCCGGGGAAAGGTGATCT	0.587													7	45					0	0	1	0	0
TMEM184C	55751	broad.mit.edu	37	4	148555359	148555359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:148555359C>T	uc003ila.3	+	10	1660	c.1091C>T	c.(1090-1092)CCC>CTC	p.P364L		NM_018241	NP_060711	Q9NVA4	T184C_HUMAN	transmembrane protein 184C	364						integral to membrane					0						AAATTGTTTCCCGAGGATCAA	0.358													3	16					0	0	1	0	0
LRBA	987	broad.mit.edu	37	4	151356784	151356784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:151356784G>A	uc010ipj.2	-	47	7505	c.7031C>T	c.(7030-7032)TCC>TTC	p.S2344F	LRBA_uc010ipi.2_Intron|LRBA_uc003ils.3_Missense_Mutation_p.S234F|LRBA_uc003ilt.3_Missense_Mutation_p.S992F|LRBA_uc003ilu.3_Missense_Mutation_p.S2333F	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2344	BEACH.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					CCAAGCTCTGGAAATTGATGA	0.333													4	38					0	0	1	0	0
MAB21L2	10586	broad.mit.edu	37	4	151504380	151504380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:151504380G>A	uc003ilw.2	+	1	1304	c.199G>A	c.(199-201)GAG>AAG	p.E67K	LRBA_uc003ils.3_5'Flank|LRBA_uc003ilt.3_Intron|LRBA_uc003ilu.3_Intron|LRBA_uc010ipj.2_Intron	NM_006439	NP_006430	Q9Y586	MB212_HUMAN	mab-21-like protein 2	67					nervous system development	nucleus				ovary(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.159)		CGAGGGGCTCGAGGTCATTTC	0.602													4	37					0	0	1	0	0
LRBA	987	broad.mit.edu	37	4	151509334	151509334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:151509334G>A	uc010ipj.2	-	41	6703	c.6229C>T	c.(6229-6231)CCT>TCT	p.P2077S	LRBA_uc003ilt.3_Missense_Mutation_p.P725S|LRBA_uc003ilu.3_Missense_Mutation_p.P2066S	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2077						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					AGGCTAACAGGACCTGCCAAA	0.433													5	20					0	0	1	0	0
LRBA	987	broad.mit.edu	37	4	151788957	151788957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:151788957G>A	uc010ipj.2	-	22	3106	c.2632C>T	c.(2632-2634)CCT>TCT	p.P878S	LRBA_uc003ilu.3_Missense_Mutation_p.P878S	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	878						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					GAATTCTTAGGATTAAAATAG	0.388													4	44					0	0	1	0	0
PET112L	5188	broad.mit.edu	37	4	152629191	152629191	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:152629191G>A	uc003iml.2	-	6	838	c.826C>T	c.(826-828)CGA>TGA	p.R276*	PET112L_uc003imm.3_Nonsense_Mutation_p.R276*	NM_004564	NP_004555	O75879	GATB_HUMAN	PET112-like precursor	276						mitochondrion	ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor|translation factor activity, nucleic acid binding				0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)			L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	ACTTCCGTTCGAACGCCCAAA	0.478													10	33					0	0	1	0	0
KIAA0922	23240	broad.mit.edu	37	4	154478223	154478223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:154478223C>T	uc003inm.3	+	6	590	c.538C>T	c.(538-540)CTT>TTT	p.L180F	KIAA0922_uc010ipp.2_Missense_Mutation_p.L180F|KIAA0922_uc010ipq.2_Missense_Mutation_p.L32F	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	180	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				GTATGGAGTCCTTTCCTATCA	0.348													7	26					0	0	1	0	0
TLR2	7097	broad.mit.edu	37	4	154624181	154624181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:154624181G>A	uc003inq.2	+	3	341	c.122G>A	c.(121-123)GGA>GAA	p.G41E	TLR2_uc003inr.2_Missense_Mutation_p.G41E|TLR2_uc003ins.2_Missense_Mutation_p.G41E	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	41	Extracellular (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				GGCAGCTCAGGATCTTTAAAC	0.502													4	29					0	0	1	0	0
SFRP2	6423	broad.mit.edu	37	4	154709789	154709789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:154709789C>T	uc003inv.1	-	1	440	c.199G>A	c.(199-201)GAG>AAG	p.E67K		NM_003013	NP_003004	Q96HF1	SFRP2_HUMAN	secreted frizzled-related protein 2 precursor	67	FZ.				brain development|cardiac left ventricle morphogenesis|cell-cell signaling|dermatome development|hemopoietic stem cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|negative regulation of cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|outflow tract morphogenesis|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell adhesion mediated by integrin|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of fat cell differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of stem cell division|sclerotome development	cytoplasm|extracellular matrix|extracellular space|plasma membrane	fibronectin binding|integrin binding|PDZ domain binding|receptor agonist activity|Wnt receptor activity|Wnt-protein binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.093)	Renal(120;0.117)				TTCATGGTCTCGTGGCCCAGC	0.617													14	124					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155219413	155219413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:155219413C>T	uc003inw.2	-	18	4688	c.4688G>A	c.(4687-4689)CGA>CAA	p.R1563Q		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1563	Cadherin 13.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		AGTGGTGCTTCGTGAACCCTG	0.448													5	21					0	0	1	0	0
PLRG1	5356	broad.mit.edu	37	4	155460287	155460287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:155460287G>A	uc003iny.2	-	12	1184	c.1121C>T	c.(1120-1122)TCA>TTA	p.S374L	PLRG1_uc003inz.2_Missense_Mutation_p.S365L	NM_002669	NP_002660	O43660	PLRG1_HUMAN	pleiotropic regulator 1 (PRL1 homolog,	374	WD 5.					catalytic step 2 spliceosome|nuclear speck	protein binding|signal transducer activity|transcription corepressor activity				0	all_hematologic(180;0.215)	Renal(120;0.0854)				AGCCCTAACTGATTTTTTGTG	0.353													4	21					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155505656	155505656	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:155505656G>A	uc003iod.1	-	6	2279	c.2221C>T	c.(2221-2223)CAC>TAC	p.H741Y		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	741	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	ACCCGGAAGTGATATTCTGCA	0.522													5	19					0	0	1	0	0
RBM46	166863	broad.mit.edu	37	4	155719082	155719082	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:155719082C>T	uc003ioo.2	+	3	444	c.271C>T	c.(271-273)CGA>TGA	p.R91*	RBM46_uc011cim.1_Nonsense_Mutation_p.R91*|RBM46_uc003iop.1_Nonsense_Mutation_p.R91*	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	91	RRM 1.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				ATATGAATTTCGACTTATGAT	0.343													4	30					0	0	1	0	0
NPY2R	4887	broad.mit.edu	37	4	156135568	156135568	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:156135568G>A	uc003ioq.2	+	2	972	c.477G>A	c.(475-477)AAG>AAA	p.K159K	NPY2R_uc003ior.2_Silent_p.K159K	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	159	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				TAGAGAGCAAGATCTCCAAGC	0.557													3	18					0	0	1	0	0
NPY2R	4887	broad.mit.edu	37	4	156135819	156135819	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:156135819G>A	uc003ioq.2	+	2	1223	c.728G>A	c.(727-729)TGG>TAG	p.W243*	NPY2R_uc003ior.2_Nonsense_Mutation_p.W243*	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	243	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				ACTCGCATTTGGAGTAAATTG	0.443													4	45					0	0	1	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156643194	156643194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:156643194G>A	uc003iov.2	+	10	2257	c.1721G>A	c.(1720-1722)CGA>CAA	p.R574Q	GUCY1A3_uc010iqc.2_Missense_Mutation_p.R574Q|GUCY1A3_uc003iow.2_Missense_Mutation_p.R574Q|GUCY1A3_uc010iqd.2_Missense_Mutation_p.R573Q|GUCY1A3_uc003iox.2_Missense_Mutation_p.R574Q|GUCY1A3_uc003ioz.2_Missense_Mutation_p.R339Q|GUCY1A3_uc003ioy.2_Missense_Mutation_p.R574Q|GUCY1A3_uc010iqe.2_Missense_Mutation_p.R339Q|GUCY1A3_uc003ipa.2_RNA|GUCY1A3_uc003ipb.2_Missense_Mutation_p.R574Q	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	574	Guanylate cyclase.				blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		TTTCAGATGCGAATTGGACTG	0.398													5	24					0	0	1	0	0
TDO2	6999	broad.mit.edu	37	4	156832720	156832720	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:156832720C>T	uc003ipf.1	+	7	754	c.690C>T	c.(688-690)ATC>ATT	p.I230I		NM_005651	NP_005642	P48775	T23O_HUMAN	tryptophan 2,3-dioxygenase	230					tryptophan catabolic process to kynurenine	cytosol	tryptophan 2,3-dioxygenase activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		KIRC - Kidney renal clear cell carcinoma(143;0.0455)|Kidney(143;0.0568)|COAD - Colon adenocarcinoma(41;0.141)	L-Tryptophan(DB00150)	AAAAAAATATCACCAGAGGCC	0.303													4	22					0	0	1	0	0
TDO2	6999	broad.mit.edu	37	4	156835556	156835556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:156835556G>A	uc003ipf.1	+	8	872	c.808G>A	c.(808-810)GAG>AAG	p.E270K		NM_005651	NP_005642	P48775	T23O_HUMAN	tryptophan 2,3-dioxygenase	270	Potential.				tryptophan catabolic process to kynurenine	cytosol	tryptophan 2,3-dioxygenase activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		KIRC - Kidney renal clear cell carcinoma(143;0.0455)|Kidney(143;0.0568)|COAD - Colon adenocarcinoma(41;0.141)	L-Tryptophan(DB00150)	CTTATTTGATGAGAAACGTCA	0.353													4	14					0	0	1	0	0
TMEM144	55314	broad.mit.edu	37	4	159161564	159161564	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:159161564C>T	uc003ipx.2	+	10	1316	c.796C>T	c.(796-798)CTA>TTA	p.L266L	TMEM144_uc010iqi.2_RNA	NM_018342	NP_060812	Q7Z5S9	TM144_HUMAN	transmembrane protein 144	266	Helical; (Potential).					integral to membrane					0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0539)		TGAAGCAGTCCTACCAGGTAA	0.378													4	18					0	0	1	0	0
RAPGEF2	9693	broad.mit.edu	37	4	160274736	160274736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:160274736C>T	uc003iqg.3	+	22	4016	c.3706C>T	c.(3706-3708)CGC>TGC	p.R1236C		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	1236					cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		TCAGGGGGATCGCGCGTCACT	0.532													18	68					0	0	1	0	0
NPY1R	4886	broad.mit.edu	37	4	164247634	164247634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:164247634G>A	uc003iqm.1	-	2	339	c.73C>T	c.(73-75)CTT>TTT	p.L25F	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	25	Extracellular (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				AAAGCCAGAAGCTGGGCATTC	0.373													8	26					0	0	1	0	0
NPY1R	4886	broad.mit.edu	37	4	164247704	164247704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:164247704C>T	uc003iqm.1	-	2	269	c.3G>A	c.(1-3)ATG>ATA	p.M1I	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	1	Extracellular (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				ATGTTGAATTCATTTTGATTG	0.343													5	19					0	0	1	0	0
NPY5R	4889	broad.mit.edu	37	4	164272066	164272066	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:164272066C>A	uc003iqn.2	+	4	823	c.641C>A	c.(640-642)TCT>TAT	p.S214Y		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	214	Helical; Name=5; (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				TTTACTATCTCTTTATTGCTA	0.383													8	97					0.00307968	0.00310507	1	1	0
TKTL2	84076	broad.mit.edu	37	4	164393422	164393422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:164393422C>T	uc003iqp.3	-	1	1626	c.1465G>A	c.(1465-1467)GAA>AAA	p.E489K		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	489						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TCAAAATTTTCTTGTGGGGTA	0.463													5	108					0	0	1	0	0
TKTL2	84076	broad.mit.edu	37	4	164393463	164393463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:164393463C>T	uc003iqp.3	-	1	1585	c.1424G>A	c.(1423-1425)CGA>CAA	p.R475Q		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	475						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TTGGCTGGTTCGAATGAAGCA	0.453													5	95					0	0	1	0	0
TRIM60	166655	broad.mit.edu	37	4	165962195	165962195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:165962195G>A	uc003iqy.1	+	3	1141	c.971G>A	c.(970-972)CGA>CAA	p.R324Q	TRIM60_uc010iqx.1_Missense_Mutation_p.R324Q	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	324	B30.2/SPRY.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		AGAAAAAAACGAAACATTTGT	0.418													8	73					0	0	1	0	0
KLHL2	11275	broad.mit.edu	37	4	166232670	166232670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:166232670C>T	uc003irb.2	+	11	1551	c.1292C>T	c.(1291-1293)GCT>GTT	p.A431V	KLHL2_uc011cjm.1_Missense_Mutation_p.A435V|KLHL2_uc003irc.2_Missense_Mutation_p.A343V|KLHL2_uc010ira.2_Missense_Mutation_p.A84V	NM_007246	NP_009177	O95198	KLHL2_HUMAN	kelch-like 2, Mayven isoform 1	431	Kelch 3.				intracellular protein transport	actin cytoskeleton|cytoplasm	actin binding|transporter activity				0	all_hematologic(180;0.221)			GBM - Glioblastoma multiforme(119;2.94e-27)|COAD - Colon adenocarcinoma(41;1.4e-05)|Kidney(143;4.95e-05)|KIRC - Kidney renal clear cell carcinoma(143;0.000927)		TTTCATGTAGCTCCCATGAAT	0.403													9	76					0	0	1	0	0
SC4MOL	6307	broad.mit.edu	37	4	166254685	166254685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:166254685C>T	uc003ire.2	+	2	293	c.163C>T	c.(163-165)CTT>TTT	p.L55F	SC4MOL_uc010irb.2_Missense_Mutation_p.L55F|SC4MOL_uc003irf.2_Intron	NM_006745	NP_006736	Q15800	ERG25_HUMAN	sterol-C4-methyl oxidase-like isoform 1	55	Helical; (Potential).				cholesterol biosynthetic process|fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	C-4 methylsterol oxidase activity|iron ion binding				0	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0875)	NADH(DB00157)	ATGGGGATCCCTTATAGTTCA	0.299													3	26					0	0	1	0	0
SC4MOL	6307	broad.mit.edu	37	4	166261450	166261450	+	Silent	SNP	C	T	T	rs73862307	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:166261450C>T	uc003ire.2	+	5	739	c.609C>T	c.(607-609)ATC>ATT	p.I203I	SC4MOL_uc010irb.2_Silent_p.I203I|SC4MOL_uc003irf.2_Silent_p.I72I	NM_006745	NP_006736	Q15800	ERG25_HUMAN	sterol-C4-methyl oxidase-like isoform 1	203	Helical; (Potential).				cholesterol biosynthetic process|fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	C-4 methylsterol oxidase activity|iron ion binding				0	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0875)	NADH(DB00157)	TCATTGGAATCGTGCTTTTGT	0.368													9	24					0	0	1	0	0
DDX60	55601	broad.mit.edu	37	4	169206001	169206001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:169206001C>T	uc003irp.2	-	12	1823	c.1531G>A	c.(1531-1533)GAT>AAT	p.D511N		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	511							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		CTGTCATAATCATCACTCAGG	0.368													4	32					0	0	1	0	0
DDX60	55601	broad.mit.edu	37	4	169209337	169209337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:169209337C>T	uc003irp.2	-	9	1463	c.1171G>A	c.(1171-1173)GAA>AAA	p.E391K		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	391							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TTTACATTTTCATTTTCATAG	0.244													5	40					0	0	1	0	0
PALLD	23022	broad.mit.edu	37	4	169825027	169825027	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:169825027G>A	uc011cjx.1	+	15	2803	c.2592G>A	c.(2590-2592)GGG>GGA	p.G864G	CBR4_uc011cjy.1_Intron|PALLD_uc003iru.2_Silent_p.G847G|PALLD_uc003irv.2_Silent_p.G465G|PALLD_uc003irw.2_Silent_p.G349G|PALLD_uc003irx.2_Silent_p.G73G	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	1071	Ig-like C2-type 3.				cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		ATGATGATGGGAATTATACAA	0.463									Pancreatic_Cancer_Familial_Clustering_of				8	44					0	0	1	0	0
NEK1	4750	broad.mit.edu	37	4	170345807	170345807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:170345807G>A	uc003isb.1	-	29	3527	c.3035C>T	c.(3034-3036)TCC>TTC	p.S1012F	NEK1_uc003isc.1_Missense_Mutation_p.S968F|NEK1_uc003isd.1_Missense_Mutation_p.S1040F|NEK1_uc003ise.1_Missense_Mutation_p.S996F|NEK1_uc003isf.1_Missense_Mutation_p.S943F	NM_012224	NP_036356	Q96PY6	NEK1_HUMAN	NIMA-related kinase 1	1012					cell division|cilium assembly|mitosis	nucleus|pericentriolar material	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(3)|ovary(2)|large_intestine(1)	6		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)|KIRC - Kidney renal clear cell carcinoma(143;0.0325)|Kidney(143;0.0385)|LUSC - Lung squamous cell carcinoma(193;0.14)		AAATGCAAAGGATTCTTCTGG	0.398													4	12					0	0	1	0	0
CLCN3	1182	broad.mit.edu	37	4	170618496	170618496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:170618496C>T	uc003isi.2	+	9	1683	c.1174C>T	c.(1174-1176)CCT>TCT	p.P392S	CLCN3_uc003ish.2_Missense_Mutation_p.P392S|CLCN3_uc011cjz.1_Missense_Mutation_p.P375S|CLCN3_uc011cka.1_Missense_Mutation_p.P365S|CLCN3_uc003isj.1_Missense_Mutation_p.P365S	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	392	Helical; (By similarity).				endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		TGAACTGTTTCCTTTTATTCT	0.433													6	55					0	0	1	0	0
CLCN3	1182	broad.mit.edu	37	4	170618790	170618790	+	Missense_Mutation	SNP	C	T	T	rs143120417		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:170618790C>T	uc003isi.2	+	9	1977	c.1468C>T	c.(1468-1470)CGT>TGT	p.R490C	CLCN3_uc003ish.2_Missense_Mutation_p.R490C|CLCN3_uc011cjz.1_Missense_Mutation_p.R473C|CLCN3_uc011cka.1_Missense_Mutation_p.R463C|CLCN3_uc003isj.1_Missense_Mutation_p.R463C	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	490					endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		CATTCCTGATCGTCCAGCAGG	0.403													5	38					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175898126	175898126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:175898126G>A	uc003iuc.2	+	5	2120	c.1450G>A	c.(1450-1452)GGA>AGA	p.G484R	ADAM29_uc003iud.2_Missense_Mutation_p.G484R|ADAM29_uc010irr.2_Missense_Mutation_p.G484R|ADAM29_uc011cki.1_Missense_Mutation_p.G484R	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	484	Cys-rich.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		TGTGGAAGATGGAATTCCCTG	0.458													4	23					0	0	1	0	0
GPM6A	2823	broad.mit.edu	37	4	176594942	176594942	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:176594942G>A	uc003iuf.2	-	3	1080	c.276C>T	c.(274-276)TTC>TTT	p.F92F	GPM6A_uc011ckj.1_Silent_p.F85F|GPM6A_uc003iug.2_Silent_p.F92F|GPM6A_uc003iuh.2_Silent_p.F81F	NM_201591	NP_963885	P51674	GPM6A_HUMAN	glycoprotein M6A isoform 2	92	Helical; (Potential).					cell surface|integral to membrane					0		Breast(14;7.35e-05)|Melanoma(52;0.00909)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;9.21e-19)|Epithelial(43;3.01e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.02e-09)|STAD - Stomach adenocarcinoma(60;0.00083)|GBM - Glioblastoma multiforme(59;0.00168)|LUSC - Lung squamous cell carcinoma(193;0.0388)		CATACACAAAGAACGCAGCTG	0.418													4	18					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183600872	183600872	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:183600872G>A	uc003ivd.1	+	7	1417	c.1380G>A	c.(1378-1380)CGG>CGA	p.R460R	ODZ3_uc003ive.1_5'Flank	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	460	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GAGAGCAGCGGAGCCTGCTTG	0.572													4	55					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183664516	183664516	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:183664516C>T	uc003ivd.1	+	18	3610	c.3573C>T	c.(3571-3573)TTC>TTT	p.F1191F	ODZ3_uc003ive.1_Silent_p.F597F	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1191	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TAGGCGATTTCAACTATGTGC	0.468													7	24					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183673091	183673091	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:183673091C>T	uc003ivd.1	+	19	3805	c.3768C>T	c.(3766-3768)GTC>GTT	p.V1256V	ODZ3_uc003ive.1_Silent_p.V669V	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1256	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ATGCAGAAGTCGTCGCAGGGA	0.537													9	33					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183694641	183694641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:183694641C>T	uc003ivd.1	+	22	4946	c.4909C>T	c.(4909-4911)CGT>TGT	p.R1637C		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1637	YD 4.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CAGTGAAGGTCGTCTGACAAA	0.403													17	70					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183694754	183694754	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:183694754C>T	uc003ivd.1	+	22	5059	c.5022C>T	c.(5020-5022)ATC>ATT	p.I1674I		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1674	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ATGTCAGCATCACTTCAAATC	0.453													8	139					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183694776	183694776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:183694776G>A	uc003ivd.1	+	22	5081	c.5044G>A	c.(5044-5046)GAT>AAT	p.D1682N		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1682	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GTCCTCGATCGATTCTTTCTA	0.463													30	112					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183713528	183713528	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:183713528C>T	uc003ivd.1	+	25	5740	c.5703C>T	c.(5701-5703)ACC>ACT	p.T1901T		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1901	YD 7.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CTCGCCACACCATGCAGACCA	0.552													6	63					0	0	1	0	0
WWC2	80014	broad.mit.edu	37	4	184233505	184233505	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:184233505C>T	uc010irx.2	+	22	3578	c.3396C>T	c.(3394-3396)TCC>TCT	p.S1132S	WWC2_uc003ivk.3_Silent_p.S927S|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_Silent_p.S814S|WWC2_uc003ivn.3_Silent_p.S647S|WWC2_uc010irz.2_Silent_p.S473S|WWC2_uc003ivo.3_Silent_p.S260S	NM_024949	NP_079225	Q6AWC2	WWC2_HUMAN	WW and C2 domain containing 2	1132	Potential.									ovary(2)|lung(1)	3		all_lung(41;5.28e-14)|Lung NSC(41;1.35e-13)|Colorectal(36;0.00681)|Hepatocellular(41;0.00886)|Renal(120;0.00992)|Prostate(90;0.0237)|all_hematologic(60;0.0592)|Esophageal squamous(56;0.179)|all_neural(102;0.202)		all cancers(43;3.38e-24)|Epithelial(43;1.4e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.09e-09)|GBM - Glioblastoma multiforme(59;3.33e-05)|Colorectal(24;3.58e-05)|STAD - Stomach adenocarcinoma(60;4.21e-05)|COAD - Colon adenocarcinoma(29;0.000171)|LUSC - Lung squamous cell carcinoma(40;0.0145)|READ - Rectum adenocarcinoma(43;0.242)		CTGAACAGTCCAAAGAAGAGC	0.478													6	100					0	0	1	0	0
CLDN22	53842	broad.mit.edu	37	4	184241037	184241037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:184241037C>T	uc010isa.1	-	1	891	c.335G>A	c.(334-336)AGA>AAA	p.R112K	WWC2_uc010irx.2_3'UTR|WWC2_uc003ivk.3_3'UTR|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_3'UTR|WWC2_uc003ivn.3_3'UTR|WWC2_uc010irz.2_3'UTR|WWC2_uc003ivo.3_3'UTR	NM_001111319	NP_001104789	Q8N7P3	CLD22_HUMAN	claudin 22	112	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0		all_lung(41;6.9e-12)|Lung NSC(41;1.28e-11)|Colorectal(36;0.0172)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)|Esophageal squamous(56;0.176)		all cancers(43;4.1e-26)|Epithelial(43;6.45e-22)|OV - Ovarian serous cystadenocarcinoma(60;7.64e-10)|Colorectal(24;5.87e-06)|GBM - Glioblastoma multiforme(59;6.5e-06)|STAD - Stomach adenocarcinoma(60;2.09e-05)|COAD - Colon adenocarcinoma(29;5.15e-05)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		CTTGAGATCTCTCTGACTCTC	0.547													4	37					0	0	1	0	0
C4orf41	60684	broad.mit.edu	37	4	184585044	184585044	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:184585044C>T	uc003ivx.2	+	2	200	c.24C>T	c.(22-24)TTC>TTT	p.F8F	C4orf41_uc003ivw.2_Silent_p.F8F|C4orf41_uc010isc.2_5'UTR	NM_021942	NP_068761	Q7Z392	CD041_HUMAN	hypothetical protein LOC60684 isoform a	8											0		all_lung(41;4.4e-14)|Lung NSC(41;1.03e-13)|Colorectal(36;0.00139)|all_hematologic(60;0.00756)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;1.39e-26)|Epithelial(43;2.42e-22)|OV - Ovarian serous cystadenocarcinoma(60;6.85e-10)|GBM - Glioblastoma multiforme(59;6.71e-06)|Colorectal(24;9.67e-06)|STAD - Stomach adenocarcinoma(60;2.36e-05)|COAD - Colon adenocarcinoma(29;7.07e-05)|LUSC - Lung squamous cell carcinoma(40;0.00984)|READ - Rectum adenocarcinoma(43;0.171)		AGTGGGACTTCCCTGTGGAAT	0.403													4	63					0	0	1	0	0
ENPP6	133121	broad.mit.edu	37	4	185038969	185038969	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:185038969C>T	uc003iwc.2	-	4	760	c.618G>A	c.(616-618)AGG>AGA	p.R206R		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	206	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		GGGCATCTTTCCTCTGCGGAG	0.582													12	98					0	0	1	0	0
PDLIM3	27295	broad.mit.edu	37	4	186427719	186427719	+	Silent	SNP	C	A	A	rs146946948		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:186427719C>A	uc003ixw.3	-	6	874	c.750G>T	c.(748-750)TCG>TCT	p.S250S	PDLIM3_uc003ixx.3_Silent_p.S202S|PDLIM3_uc010isi.2_RNA	NM_014476	NP_055291	Q53GG5	PDLI3_HUMAN	PDZ and LIM domain protein 3 isoform a	250						sarcomere	zinc ion binding			ovary(2)	2		all_lung(41;1.03e-13)|Lung NSC(41;2.49e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.00996)|Colorectal(36;0.0161)|all_hematologic(60;0.0592)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.4e-10)|BRCA - Breast invasive adenocarcinoma(30;8.64e-05)|GBM - Glioblastoma multiforme(59;0.000167)|STAD - Stomach adenocarcinoma(60;0.000828)|LUSC - Lung squamous cell carcinoma(40;0.00984)|COAD - Colon adenocarcinoma(29;0.0115)|READ - Rectum adenocarcinoma(43;0.171)		TGAAGGAGCCCGACTGGCGAG	0.632													4	53					1	1	1	1	0
KLKB1	3818	broad.mit.edu	37	4	187172417	187172417	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:187172417C>T	uc003iyy.2	+	8	874	c.803C>T	c.(802-804)TCC>TTC	p.S268F	KLKB1_uc011clc.1_Missense_Mutation_p.S66F|KLKB1_uc011cld.1_Missense_Mutation_p.S230F	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	268	Apple 3.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		ACACCAAGTTCCTCTACTCCT	0.299													8	91					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187531066	187531066	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:187531066G>A	uc003izf.2	-	15	10145	c.9957C>T	c.(9955-9957)GCC>GCT	p.A3319A		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3319	Extracellular (Potential).|Cadherin 30.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CGTTCACAGTGGCAACGTCGC	0.458										HNSCC(5;0.00058)			5	28					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187540298	187540298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:187540298G>A	uc003izf.2	-	10	7630	c.7442C>T	c.(7441-7443)ACT>ATT	p.T2481I		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2481	Extracellular (Potential).|Cadherin 22.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TCCAATTACAGTTACATGAAC	0.478										HNSCC(5;0.00058)			44	174					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187541018	187541018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:187541018G>A	uc003izf.2	-	10	6910	c.6722C>T	c.(6721-6723)CCT>CTT	p.P2241L		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2241	Extracellular (Potential).|Cadherin 20.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						AAAGTCCAGAGGAGCTATGAC	0.493										HNSCC(5;0.00058)			7	135					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187541765	187541765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:187541765G>A	uc003izf.2	-	10	6163	c.5975C>T	c.(5974-5976)TCC>TTC	p.S1992F		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1992	Extracellular (Potential).|Cadherin 18.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GGCCTCGGTGGAATTCTCTTT	0.408										HNSCC(5;0.00058)			30	196					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187542656	187542656	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:187542656G>A	uc003izf.2	-	10	5272	c.5084C>T	c.(5083-5085)TCA>TTA	p.S1695L		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1695	Extracellular (Potential).|Cadherin 15.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CACCACTGATGATTGACTATG	0.388										HNSCC(5;0.00058)			9	56					0	0	1	0	0
ZFP42	132625	broad.mit.edu	37	4	188924578	188924578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:188924578G>A	uc003izg.1	+	3	862	c.617G>A	c.(616-618)AGA>AAA	p.R206K	ZFP42_uc003izh.1_Missense_Mutation_p.R206K|ZFP42_uc003izi.1_Missense_Mutation_p.R206K	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	206	C2H2-type 1.				female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		GCTGCCCTGAGAAAGCATCTC	0.478													19	79					0	0	1	0	0
TRIML2	205860	broad.mit.edu	37	4	189012810	189012810	+	Missense_Mutation	SNP	G	A	A	rs141991055	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:189012810G>A	uc003izl.2	-	7	917	c.881C>T	c.(880-882)TCG>TTG	p.S294L	TRIML2_uc003izj.1_Missense_Mutation_p.S122L|TRIML2_uc003izk.1_Missense_Mutation_p.S102L|TRIML2_uc011cle.1_Missense_Mutation_p.S369L	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	294	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		CCCCATCACCGACCCCGTGAG	0.572													9	160					0	0	1	0	0
TRIML2	205860	broad.mit.edu	37	4	189012974	189012974	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:189012974G>A	uc003izl.2	-	7	753	c.717C>T	c.(715-717)TTC>TTT	p.F239F	TRIML2_uc003izj.1_Silent_p.F67F|TRIML2_uc003izk.1_Silent_p.F47F|TRIML2_uc011cle.1_Silent_p.F314F	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	239	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		CCATGGCACTGAAATCCAATC	0.557													7	118					0	0	1	0	0
TUBB4Q	56604	broad.mit.edu	37	4	190903874	190903874	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:190903874T>C	uc011clg.1	-	4	1109	c.1106A>G	c.(1105-1107)AAC>AGC	p.N369S		NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q	370					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		GGCTGTGTTGTTCCCAGTGAA	0.547													6	110					0	0	1	0	0
TUBB4Q	56604	broad.mit.edu	37	4	190904372	190904372	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr4:190904372T>G	uc011clg.1	-	4	611	c.608A>C	c.(607-609)AAC>ACC	p.N203T		NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q	204					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		TAGCGCTTCGTTATCTATGCA	0.537													17	87					0	0	1	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	163410	163410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:163410C>T	uc003jak.2	+	11	2205	c.2155C>T	c.(2155-2157)CCC>TCC	p.P719S		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	719					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		CAGGAAACATCCCCAGAAGAA	0.607													5	69					0	0	1	0	0
SLC9A3	6550	broad.mit.edu	37	5	476448	476448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:476448C>T	uc003jbe.2	-	13	2048	c.1936G>A	c.(1936-1938)GAG>AAG	p.E646K	SLC9A3_uc011clx.1_Missense_Mutation_p.E637K|uc011cly.1_5'Flank	NM_004174	NP_004165	P48764	SL9A3_HUMAN	solute carrier family 9 (sodium/hydrogen	646	Interaction with PDZD3 (By similarity).|Cytoplasmic (Potential).					cell surface|integral to membrane	sodium:hydrogen antiporter activity				0			Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			TCCTGTTTCTCGTCCTCCGTG	0.612													21	81					0	0	1	0	0
SLC9A3	6550	broad.mit.edu	37	5	477505	477505	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:477505C>T	uc003jbe.2	-	11	1814	c.1702G>A	c.(1702-1704)GTC>ATC	p.V568I	SLC9A3_uc011clx.1_Missense_Mutation_p.V559I|uc011cly.1_5'Flank	NM_004174	NP_004165	P48764	SL9A3_HUMAN	solute carrier family 9 (sodium/hydrogen	568	Cytoplasmic (Potential).					cell surface|integral to membrane	sodium:hydrogen antiporter activity				0			Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			TCCACGTTGACCACGTTGTCG	0.652													4	37					0	0	1	0	0
CEP72	55722	broad.mit.edu	37	5	619195	619195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:619195C>T	uc003jbf.2	+	2	245	c.173C>T	c.(172-174)TCT>TTT	p.S58F	CEP72_uc011clz.1_RNA	NM_018140	NP_060610	Q9P209	CEP72_HUMAN	centrosomal protein 72 kDa	58	LRR 2.				G2/M transition of mitotic cell cycle|gamma-tubulin complex localization|spindle organization	centrosome|cytosol				ovary(1)	1			Epithelial(17;0.000339)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|Lung(60;0.0863)			GGTCTGAAATCTTTGGATCTC	0.408													7	90					0	0	1	0	0
SLC12A7	10723	broad.mit.edu	37	5	1075533	1075533	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:1075533G>A	uc003jbu.2	-	15	1986	c.1920C>T	c.(1918-1920)TCC>TCT	p.S640S		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	640	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	TGAGCATGGCGGACAGCGCGT	0.657													4	43					0	0	1	0	0
SLC6A18	348932	broad.mit.edu	37	5	1243729	1243729	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:1243729G>A	uc003jby.1	+	9	1314	c.1191G>A	c.(1189-1191)CCG>CCA	p.P397P		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	397	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TCCACATGCCGGGGGCTCCTG	0.657													7	78					0	0	1	0	0
SLC6A3	6531	broad.mit.edu	37	5	1441490	1441490	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:1441490G>A	uc003jck.2	-	3	523	c.402C>T	c.(400-402)ATC>ATT	p.I134I		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	134					cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	GTATGGGGCAGATCTTCCAGA	0.582													11	74					0	0	1	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5191833	5191833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:5191833C>T	uc003jdl.2	+	8	1381	c.1243C>T	c.(1243-1245)CGC>TGC	p.R415C	ADAMTS16_uc003jdk.1_Missense_Mutation_p.R415C|ADAMTS16_uc003jdj.1_Missense_Mutation_p.R415C	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	415	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						TAGTAAATATCGCAGCTGCAC	0.418													10	28					0	0	1	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5242222	5242222	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:5242222G>A	uc003jdl.2	+	17	2718	c.2580G>A	c.(2578-2580)TTG>TTA	p.L860L	ADAMTS16_uc003jdk.1_Silent_p.L860L	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	860	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						TGCCTCGCTTGGGGACCGAGA	0.552													5	63					0	0	1	0	0
KIAA0947	23379	broad.mit.edu	37	5	5457803	5457803	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:5457803C>T	uc003jdm.3	+	12	1272	c.1050C>T	c.(1048-1050)CCC>CCT	p.P350P		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	350	Pro-rich.									ovary(1)|central_nervous_system(1)	2						TGCCCTCGCCCCCTCCGATGT	0.448													24	173					0	0	1	0	0
FLJ33360	401172	broad.mit.edu	37	5	6337290	6337290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:6337290C>T	uc003jdn.1	-	1	116	c.19G>A	c.(19-21)GAG>AAG	p.E7K		NM_001001702	NP_001001702			SubName: Full=FLJ33360 protein; SubName: Full=cDNA FLJ33360 fis, clone BRACE2005253;												0						CGTCTTCTCTCAATGCAGGTG	0.517													11	92					0	0	1	0	0
ADCY2	108	broad.mit.edu	37	5	7520986	7520986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:7520986G>A	uc003jdz.1	+	3	611	c.544G>A	c.(544-546)GGA>AGA	p.G182R		NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	182					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						TGCAACACCGGGAGGCAAGGA	0.617													6	90					0	0	1	0	0
MTRR	4552	broad.mit.edu	37	5	7891518	7891518	+	Missense_Mutation	SNP	C	T	T	rs137853062		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:7891518C>T	uc003jed.2	+	10	1472	c.1442C>T	c.(1441-1443)TCG>TTG	p.S481L	MTRR_uc003jee.3_Missense_Mutation_p.S454L|MTRR_uc003jef.3_RNA|MTRR_uc003jeg.3_RNA|MTRR_uc010ito.2_RNA	NM_024010	NP_076915	Q9UBK8	MTRR_HUMAN	methionine synthase reductase isoform 2	481	FAD-binding FR-type.|FAD.				methionine biosynthetic process	cytosol	[methionine synthase] reductase activity|flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding			ovary(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)|L-Methionine(DB00134)	AGACCATATTCGTGTGCAAGG	0.294													8	37					0	0	1	0	0
SEMA5A	9037	broad.mit.edu	37	5	9154728	9154728	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:9154728G>A	uc003jek.2	-	12	2065	c.1353C>T	c.(1351-1353)TTC>TTT	p.F451F		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	451	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GCCTCTCAGGGAAGAGCTCAA	0.557													9	54					0	0	1	0	0
SEMA5A	9037	broad.mit.edu	37	5	9380002	9380002	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:9380002G>A	uc003jek.2	-	3	769	c.57C>T	c.(55-57)CTC>CTT	p.L19L		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	19					cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						CTGGGTGGGCGAGTCTCCACA	0.562													12	65					0	0	1	0	0
FAM173B	134145	broad.mit.edu	37	5	10239373	10239373	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:10239373A>G	uc003jeo.2	-	2	141	c.112T>C	c.(112-114)TTC>CTC	p.F38L	FAM173B_uc003jep.2_RNA|FAM173B_uc010itr.2_Missense_Mutation_p.F38L	NM_199133	NP_954584	Q6P4H8	F173B_HUMAN	hypothetical protein LOC134145	38	Helical; (Potential).					integral to membrane				kidney(1)|central_nervous_system(1)	2						GTAAGTAAGAACCCCCAGTTG	0.478													15	92					0	0	1	0	0
MARCH6	10299	broad.mit.edu	37	5	10382043	10382043	+	Missense_Mutation	SNP	C	T	T	rs138429990		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:10382043C>T	uc003jet.1	+	4	505	c.322C>T	c.(322-324)CCT>TCT	p.P108S	MARCH6_uc011cmu.1_Intron|MARCH6_uc003jeu.1_5'UTR|MARCH6_uc011cmv.1_Intron	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6	108	Helical; (Potential).				protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						GGGAGTTGTTCCTCTTACAGC	0.338													14	147					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11111118	11111118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:11111118G>A	uc003jfa.1	-	14	2460	c.2315C>T	c.(2314-2316)TCG>TTG	p.S772L	CTNND2_uc010itt.2_Missense_Mutation_p.S681L|CTNND2_uc011cmy.1_Missense_Mutation_p.S435L|CTNND2_uc011cmz.1_Missense_Mutation_p.S339L|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.S339L	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	772	ARM 6.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CAGCCGGTACGAGAGGTTCCT	0.537													10	94					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11364996	11364996	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:11364996G>A	uc003jfa.1	-	8	1329	c.1184C>T	c.(1183-1185)TCC>TTC	p.S395F	CTNND2_uc010itt.2_Missense_Mutation_p.S304F|CTNND2_uc011cmy.1_Missense_Mutation_p.S58F|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_5'UTR	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	395	ARM 1.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TGAGGCTCGGGAACCAGCTGA	0.488													13	66					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13708294	13708294	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:13708294C>T	uc003jfd.2	-	76	13318	c.13276G>A	c.(13276-13278)GAA>AAA	p.E4426K	DNAH5_uc003jfc.2_Missense_Mutation_p.E594K	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4426					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CGCAGATTTTCGCTCATGATG	0.463									Kartagener_syndrome				6	75					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13721223	13721223	+	Silent	SNP	G	A	A	rs138781046		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:13721223G>A	uc003jfd.2	-	71	12207	c.12165C>T	c.(12163-12165)CCC>CCT	p.P4055P	DNAH5_uc003jfc.2_Silent_p.P223P	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4055	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGGAATCTGTGGGGTCTGAGC	0.498									Kartagener_syndrome				11	44					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13727687	13727687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:13727687C>T	uc003jfd.2	-	70	12004	c.11962G>A	c.(11962-11964)GAT>AAT	p.D3988N	DNAH5_uc003jfc.2_Missense_Mutation_p.D156N	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3988					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGAGATTTATCATAGGCATTT	0.388									Kartagener_syndrome				6	19					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13729599	13729599	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:13729599C>T	uc003jfd.2	-	69	11874	c.11832G>A	c.(11830-11832)CTG>CTA	p.L3944L	DNAH5_uc003jfc.2_Silent_p.L112L	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3944					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCACCAAATTCAGCCATGTTA	0.373									Kartagener_syndrome				6	32					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13766175	13766175	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:13766175C>T	uc003jfd.2	-	59	10053	c.10011G>A	c.(10009-10011)GTG>GTA	p.V3337V	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3337	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGTCAATTTTCACAGCACTGA	0.493									Kartagener_syndrome				6	46					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13766188	13766188	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:13766188T>A	uc003jfd.2	-	59	10040	c.9998A>T	c.(9997-9999)AAA>ATA	p.K3333I	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3333	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGCACTGACTTTCCTTTGAAA	0.498									Kartagener_syndrome				6	46					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13769663	13769663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:13769663C>T	uc003jfd.2	-	57	9709	c.9667G>A	c.(9667-9669)GAA>AAA	p.E3223K	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3223	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCTTCCAGTTCTTTACTCAAG	0.423									Kartagener_syndrome				7	52					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13829790	13829790	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:13829790C>T	uc003jfd.2	-	38	6315	c.6273G>A	c.(6271-6273)CAG>CAA	p.Q2091Q		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2091	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CAGGGAGTTCCTGCCGTCCGG	0.428									Kartagener_syndrome				3	16					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13885242	13885242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:13885242C>T	uc003jfd.2	-	19	2881	c.2839G>A	c.(2839-2841)GAA>AAA	p.E947K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	947	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATCTCAGTTTCTTTCTTTTTC	0.428									Kartagener_syndrome				4	41					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13923529	13923529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:13923529C>T	uc003jfd.2	-	4	340	c.298G>A	c.(298-300)GGG>AGG	p.G100R	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	100	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGATTTACCCCTCCTAGAGAG	0.408									Kartagener_syndrome				8	15					0	0	1	0	0
FAM105B	90268	broad.mit.edu	37	5	14690314	14690314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:14690314C>T	uc003jfk.2	+	6	913	c.761C>T	c.(760-762)CCA>CTA	p.P254L		NM_138348	NP_612357	Q96BN8	F105B_HUMAN	hypothetical protein LOC90268	254										ovary(2)	2	Lung NSC(4;0.00696)					AAGGAAGTACCATTTTTCTCT	0.428													6	37					0	0	1	0	0
MYO10	4651	broad.mit.edu	37	5	16670820	16670820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:16670820G>A	uc003jft.3	-	39	6166	c.5698C>T	c.(5698-5700)CGG>TGG	p.R1900W	MYO10_uc011cnb.1_Missense_Mutation_p.R529W|MYO10_uc011cnc.1_Missense_Mutation_p.R779W|MYO10_uc011cnd.1_Missense_Mutation_p.R1257W|MYO10_uc011cne.1_Missense_Mutation_p.R1257W|MYO10_uc010itx.2_Missense_Mutation_p.R1522W	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	1900	FERM.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						ACCTTCTGCCGGACCACGGAT	0.562													10	80					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	17354212	17354212	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:17354212C>T	uc003jfy.2	-	1		c.517G>A			uc003jfz.2_Intron					full-length cDNA clone CS0DC022YF01 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).																		ACATTTTTTTCCAAATGTAAT	0.458													6	115					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	28927311	28927311	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:28927311C>T	uc003jgz.1	+	1		c.335C>T								Homo sapiens similar to Striatin, mRNA (cDNA clone MGC:150339 IMAGE:40119616), complete cds.																		AGCTATGATTCTGATGAAGGT	0.413													4	48					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31313513	31313513	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:31313513C>T	uc003jhe.1	+	8	1668	c.1342C>T	c.(1342-1344)CGA>TGA	p.R448*	CDH6_uc003jhd.1_Nonsense_Mutation_p.R448*	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	448	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						ACTTCTTGACCGAGAAACACT	0.413													7	51					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32074473	32074473	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:32074473G>A	uc003jhl.2	+	18	3649	c.3261G>A	c.(3259-3261)TTG>TTA	p.L1087L	PDZD2_uc003jhm.2_Silent_p.L1087L|PDZD2_uc011cnx.1_Silent_p.L913L	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1087					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CACCCAAATTGGAATACACAG	0.592													12	122					0	0	1	0	0
MTMR12	54545	broad.mit.edu	37	5	32248971	32248971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:32248971G>A	uc003jhq.2	-	9	973	c.803C>T	c.(802-804)TCC>TTC	p.S268F	MTMR12_uc010iuk.2_Missense_Mutation_p.S268F|MTMR12_uc010iul.2_Missense_Mutation_p.S268F	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	268	Myotubularin phosphatase.					cytoplasm	phosphatase activity			ovary(1)	1						ATTGTGGCAGGACCAACACCA	0.408													14	113					0	0	1	0	0
TARS	6897	broad.mit.edu	37	5	33458688	33458688	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:33458688C>T	uc003jhy.2	+	10	1297	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	TARS_uc011cob.1_Silent_p.F322F|TARS_uc010iup.1_Silent_p.F275F|TARS_uc011coc.1_Silent_p.F355F|TARS_uc003jhz.2_Silent_p.F230F|TARS_uc011cod.1_Silent_p.F213F	NM_152295	NP_689508	P26639	SYTC_HUMAN	threonyl-tRNA synthetase	334					threonyl-tRNA aminoacylation	cytosol	ATP binding|protein homodimerization activity|threonine-tRNA ligase activity			ovary(2)	2					L-Threonine(DB00156)	AACTATATTTCTTTCATGAAC	0.338													7	29					0	0	1	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33549404	33549404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:33549404G>A	uc003jia.1	-	21	4373	c.4210C>T	c.(4210-4212)CAC>TAC	p.H1404Y	ADAMTS12_uc010iuq.1_Missense_Mutation_p.H1319Y	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1404	TSP type-1 6.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						AACTGGCAGTGAAATGGCCTC	0.597										HNSCC(64;0.19)			7	80					0	0	1	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33576652	33576652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:33576652C>T	uc003jia.1	-	19	3642	c.3479G>A	c.(3478-3480)GGG>GAG	p.G1160E	ADAMTS12_uc010iuq.1_Missense_Mutation_p.G1075E	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1160	Spacer 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						TCTTTCTTCCCCTGAGCCACT	0.463										HNSCC(64;0.19)			4	32					0	0	1	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33881473	33881473	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:33881473C>T	uc003jia.1	-	2	403	c.240G>A	c.(238-240)AGG>AGA	p.R80R	ADAMTS12_uc010iuq.1_Silent_p.R80R|ADAMTS12_uc003jib.1_Silent_p.R80R	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	80					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						AATCTCTCTTCCTCCTGCTGC	0.488										HNSCC(64;0.19)			12	60					0	0	1	0	0
C1QTNF3	114899	broad.mit.edu	37	5	34043183	34043183	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:34043183G>A	uc003jin.2	-	1	135	c.48C>T	c.(46-48)TTC>TTT	p.F16F	C1QTNF3_uc003jio.2_Silent_p.F16F	NM_030945	NP_112207	Q9BXJ4	C1QT3_HUMAN	C1q and tumor necrosis factor related protein 3	16						collagen					0	all_lung(31;0.0207)					AAAAAGGGAGGAAAAACAAAG	0.493													6	40					0	0	1	0	0
RAD1	5810	broad.mit.edu	37	5	34909028	34909028	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:34909028A>T	uc003jix.2	-	6	1020	c.691T>A	c.(691-693)TCT>ACT	p.S231T	RAD1_uc003jiw.2_Missense_Mutation_p.S122T|RAD1_uc003jiy.2_Missense_Mutation_p.S231T	NM_002853	NP_002844	O60671	RAD1_HUMAN	RAD1 homolog	231				SLLKPSTK->AAAAAAAA: Abolishes association of the 9-1-1 complex with RAD17.	DNA damage checkpoint|DNA repair|DNA replication|meiotic prophase I	nucleoplasm	3'-5' exonuclease activity|damaged DNA binding|exodeoxyribonuclease III activity|protein binding				0	all_lung(31;0.000107)	Lung NSC(810;5.19e-05)|Ovarian(839;0.0448)|Breast(839;0.198)	COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			GCCTTTGTAGAGGGTTTCAGT	0.348								Other_conserved_DNA_damage_response_genes					9	77					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35753777	35753777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:35753777G>A	uc003jjo.2	+	24	3493	c.3382G>A	c.(3382-3384)GAG>AAG	p.E1128K	SPEF2_uc003jjp.1_Missense_Mutation_p.E614K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1128					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GGAAGAGGCGGAGCAGGAGCG	0.498													21	72					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35759750	35759750	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:35759750G>A	uc003jjo.2	+	25	3660	c.3549G>A	c.(3547-3549)GAG>GAA	p.E1183E	SPEF2_uc003jjp.1_Silent_p.E669E	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1183					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TCCCAGTAGAGGACAACAAGA	0.393													5	70					0	0	1	0	0
IL7R	3575	broad.mit.edu	37	5	35876356	35876356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:35876356C>T	uc003jjs.2	+	8	1237	c.1148C>T	c.(1147-1149)TCC>TTC	p.S383F	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	383	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			CCTATTCTCTCCTCTTCCAGG	0.542													4	12					0	0	1	0	0
CAPSL	133690	broad.mit.edu	37	5	35910093	35910093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:35910093C>T	uc003jjt.1	-	4	495	c.400G>A	c.(400-402)GAA>AAA	p.E134K	CAPSL_uc003jju.1_Missense_Mutation_p.E134K	NM_001042625	NP_001036090	Q8WWF8	CAPSL_HUMAN	calcyphosine-like	134	EF-hand 3.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(31;0.000268)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.167)|Colorectal(62;0.202)			CGAAGGTCTTCGATTGTTATA	0.383													10	56					0	0	1	0	0
CAPSL	133690	broad.mit.edu	37	5	35910505	35910505	+	Missense_Mutation	SNP	C	T	T	rs145854210		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:35910505C>T	uc003jjt.1	-	3	373	c.278G>A	c.(277-279)GGA>GAA	p.G93E	CAPSL_uc003jju.1_Missense_Mutation_p.G93E	NM_001042625	NP_001036090	Q8WWF8	CAPSL_HUMAN	calcyphosine-like	93	2 (Potential).|EF-hand 2.					cytoplasm	calcium ion binding	p.G93E(1)		skin(1)	1	all_lung(31;0.000268)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.167)|Colorectal(62;0.202)			GTCTATTGTTCCATTTCCATC	0.373													7	33					0	0	1	0	0
UGT3A1	133688	broad.mit.edu	37	5	35955747	35955747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:35955747C>T	uc003jjv.1	-	6	1452	c.1295G>A	c.(1294-1296)AGG>AAG	p.R432K	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.R432K|UGT3A1_uc011cor.1_Missense_Mutation_p.R398K	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	432	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGCCACATACCTCTTGTCTTC	0.403													6	48					0	0	1	0	0
UGT3A1	133688	broad.mit.edu	37	5	35957493	35957493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:35957493C>T	uc003jjv.1	-	5	1029	c.872G>A	c.(871-873)GGG>GAG	p.G291E	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.G291E|UGT3A1_uc011cor.1_Missense_Mutation_p.G257E	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	291	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCCTGCATCCCCAAAGTTGGC	0.488													4	31					0	0	1	0	0
UGT3A2	167127	broad.mit.edu	37	5	36035947	36035947	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:36035947G>A	uc003jjz.1	-	7	1518	c.1425C>T	c.(1423-1425)GTC>GTT	p.V475V	UGT3A2_uc011cos.1_Silent_p.V441V|UGT3A2_uc011cot.1_Silent_p.V173V	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	475	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GCTGCTGAAAGACATAGGGCT	0.617													4	25					0	0	1	0	0
LMBRD2	92255	broad.mit.edu	37	5	36142655	36142655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:36142655G>A	uc003jkb.1	-	3	636	c.221C>T	c.(220-222)CCT>CTT	p.P74L		NM_001007527	NP_001007528	Q68DH5	LMBD2_HUMAN	LMBR1 domain containing 2	74	Extracellular (Potential).					integral to membrane					0	all_lung(31;0.000146)		Epithelial(62;0.0396)|Lung(74;0.111)|all cancers(62;0.115)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GCTATTCTCAGGAGGGCTTGA	0.368													12	83					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38352428	38352428	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:38352428C>T	uc003jlc.1	+	5	864	c.540C>T	c.(538-540)TTC>TTT	p.F180F	EGFLAM_uc003jlb.1_Silent_p.F180F	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	180	Fibronectin type-III 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					CTGTGGAATTCATCAGGTAAG	0.328													6	89					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38406258	38406258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:38406258G>A	uc003jlc.1	+	7	1067	c.743G>A	c.(742-744)GGA>GAA	p.G248E	EGFLAM_uc003jlb.1_Missense_Mutation_p.G248E|EGFLAM_uc003jle.1_Missense_Mutation_p.G14E|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	248						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GGCCGCTATGGACCCCGTTAT	0.478													5	33					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38406955	38406955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:38406955G>A	uc003jlc.1	+	8	1178	c.854G>A	c.(853-855)GGA>GAA	p.G285E	EGFLAM_uc003jlb.1_Missense_Mutation_p.G285E|EGFLAM_uc003jle.1_Missense_Mutation_p.G51E|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	285						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GCTACCAAAGGAGGGAATAAG	0.428													3	22					0	0	1	0	0
LIFR	3977	broad.mit.edu	37	5	38493710	38493710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:38493710G>A	uc010ive.1	-	14	2395	c.2063C>T	c.(2062-2064)TCT>TTT	p.S688F	LIFR_uc003jli.2_Missense_Mutation_p.S688F	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	688	Fibronectin type-III 5.|Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					CATCTTACCAGATTCTATTAC	0.328			T	PLAG1	salivary adenoma								9	51					0	0	1	0	0
LIFR	3977	broad.mit.edu	37	5	38510690	38510690	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:38510690C>T	uc010ive.1	-	7	1199	c.867G>A	c.(865-867)TTG>TTA	p.L289L	LIFR_uc003jli.2_Silent_p.L289L	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	289	Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					CAAGATGGATCAAGGGGCAGT	0.363			T	PLAG1	salivary adenoma								6	25					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38881854	38881854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:38881854G>A	uc003jln.1	+	4	773	c.406G>A	c.(406-408)GAG>AAG	p.E136K	OSMR_uc003jlm.1_Missense_Mutation_p.E136K	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	136	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					GAGTTCCTGGGAGGAAGTCAG	0.423													10	40					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38917673	38917673	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:38917673G>A	uc003jln.1	+	10	1678	c.1311G>A	c.(1309-1311)TGG>TGA	p.W437*	OSMR_uc011cpj.1_5'UTR	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	437	Fibronectin type-III 2.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					CTGATGTCTGGAGAATTGTGA	0.403													4	59					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38917675	38917675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:38917675G>A	uc003jln.1	+	10	1680	c.1313G>A	c.(1312-1314)AGA>AAA	p.R438K	OSMR_uc011cpj.1_5'UTR	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	438	Fibronectin type-III 2.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					GATGTCTGGAGAATTGTGAGC	0.398													4	60					0	0	1	0	0
RICTOR	253260	broad.mit.edu	37	5	38942419	38942419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:38942419G>A	uc003jlp.2	-	38	5138	c.5114C>T	c.(5113-5115)TCT>TTT	p.S1705F	RICTOR_uc003jlo.2_Missense_Mutation_p.S1729F|RICTOR_uc010ivf.2_Missense_Mutation_p.S1382F	NM_152756	NP_689969	Q6R327	RICTR_HUMAN	rapamycin-insensitive companion of mTOR	1705					actin cytoskeleton reorganization|embryo development|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|regulation of protein kinase B signaling cascade|T cell costimulation	cytosol|TORC2 complex	protein binding			ovary(3)|lung(3)|skin(2)|kidney(1)|central_nervous_system(1)	10	all_lung(31;0.000396)					GGATTCAGCAGATGTATCAAC	0.348													5	18					0	0	1	0	0
TTC33	23548	broad.mit.edu	37	5	40746990	40746990	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:40746990A>T	uc003jma.2	-	2	279	c.131T>A	c.(130-132)ATT>AAT	p.I44N	TTC33_uc011cpm.1_5'UTR|TTC33_uc010ivg.2_Missense_Mutation_p.I44N	NM_012382	NP_036514	Q6PID6	TTC33_HUMAN	tetratricopeptide repeat domain 33	44							binding			ovary(1)	1						CCTACGTTTAATGGCATGAAG	0.428													5	24					0	0	1	0	0
CARD6	84674	broad.mit.edu	37	5	40843438	40843438	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:40843438G>A	uc003jmg.2	+	2	543	c.468G>A	c.(466-468)AGG>AGA	p.R156R		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	156					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						CTAGTTATAGGGAAACAGCTT	0.418													6	19					0	0	1	0	0
CARD6	84674	broad.mit.edu	37	5	40852546	40852546	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:40852546A>G	uc003jmg.2	+	3	1187	c.1112A>G	c.(1111-1113)CAA>CGA	p.Q371R		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	371					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						CGAGACATACAAACCATTAAT	0.463													5	39					0	0	1	0	0
C7	730	broad.mit.edu	37	5	40972595	40972595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:40972595C>T	uc003jmh.2	+	15	2087	c.1973C>T	c.(1972-1974)TCC>TTC	p.S658F	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	658	Sushi 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GTGACTGTTTCCTGTTCAGGT	0.458													9	32					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41052574	41052574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:41052574C>T	uc003jmj.3	-	12	1713	c.1223G>A	c.(1222-1224)AGG>AAG	p.R408K	HEATR7B2_uc003jmi.3_5'UTR	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	408	HEAT 5.						binding			ovary(6)|central_nervous_system(2)	8						TACCAGATTCCTGTTCAACGT	0.388													8	37					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41149419	41149419	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:41149419C>T	uc003jmk.2	-	17	2757	c.2547G>A	c.(2545-2547)AGG>AGA	p.R849R	C6_uc003jml.1_Silent_p.R849R	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	849	C5b-binding domain.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				AAAGTCTTGTCCTTTCAAGAC	0.418													4	9					0	0	1	0	0
PAIP1	10605	broad.mit.edu	37	5	43529915	43529916	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:43529915_43529916CC>TT	uc003job.2	-	10	1565_1566	c.1318_1319GG>AA	c.(1318-1320)GGA>AAA	p.G440K	PAIP1_uc003joa.2_Missense_Mutation_p.G361K|PAIP1_uc010ivp.2_Intron|PAIP1_uc010ivo.2_RNA|PAIP1_uc003joc.2_Missense_Mutation_p.G328K	NM_006451	NP_006442	Q9H074	PAIP1_HUMAN	poly(A) binding protein interacting protein 1	440	PABPC1-interacting motif-1 (PAM1).				mRNA stabilization|nuclear-transcribed mRNA poly(A) tail shortening|translational initiation	cytosol	protein binding|RNA binding|translation activator activity			ovary(1)	1	Lung NSC(6;2.07e-05)					TAAATCTGTTCCATTTTCTTCA	0.347													5	34					0	0	1	0	0
HSPB3	8988	broad.mit.edu	37	5	53751877	53751877	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:53751877C>T	uc003jph.1	+	1	433	c.258C>T	c.(256-258)ATC>ATT	p.I86I		NM_006308	NP_006299	Q12988	HSPB3_HUMAN	heat shock 27kDa protein 3	86					cell death|response to heat|response to unfolded protein	cytoplasm|nucleus					0		Lung NSC(810;0.00104)				AAGACATCATCATTCAGACCT	0.527													8	40					0	0	1	0	0
IL31RA	133396	broad.mit.edu	37	5	55212579	55212579	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:55212579G>A	uc003jql.2	+	15	1991	c.1926G>A	c.(1924-1926)GTG>GTA	p.V642V	IL31RA_uc003jqm.2_Silent_p.V610V|IL31RA_uc003jqn.2_Silent_p.V642V|IL31RA_uc003jqo.2_Silent_p.V500V	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	610	Cytoplasmic (Potential).				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				AGTTGGTGGTGAACTTTGGGA	0.448													4	45					0	0	1	0	0
ACTBL2	345651	broad.mit.edu	37	5	56778437	56778437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:56778437G>A	uc003jrm.2	-	1	200	c.98C>T	c.(97-99)CCC>CTC	p.P33L		NM_001017992	NP_001017992	Q562R1	ACTBL_HUMAN	actin, beta-like 2	33						cytoplasm|cytoskeleton	ATP binding			ovary(3)	3		Lung NSC(810;0.000135)|Prostate(74;0.055)|Breast(144;0.0707)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;4.24e-37)		TATCATGGAGGGGAACACAGC	0.587													3	10					0	0	1	0	0
CENPK	64105	broad.mit.edu	37	5	64814356	64814356	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:64814356G>A	uc003jts.2	-	11	968	c.756C>T	c.(754-756)GCC>GCT	p.A252A	CENPK_uc003jtt.2_Silent_p.A222A|CENPK_uc003jtu.2_Silent_p.A252A	NM_022145	NP_071428	Q9BS16	CENPK_HUMAN	SoxLZ/Sox6 leucine zipper binding protein	252					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleoplasm					0		Lung NSC(167;7.21e-05)|Prostate(74;0.0174)|Ovarian(174;0.186)		Lung(70;0.00466)		GATGTCTCAAGGCAATTCCAT	0.348													5	37					0	0	1	0	0
MAST4	375449	broad.mit.edu	37	5	66409920	66409920	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:66409920T>C	uc003jut.1	+	11	965	c.897T>C	c.(895-897)TTT>TTC	p.F299F	MAST4_uc003jus.2_Silent_p.F299F|MAST4_uc003juu.1_Silent_p.F309F|MAST4_uc011cra.1_Silent_p.F282F|MAST4_uc003juv.2_Silent_p.F294F|MAST4_uc003juw.2_Silent_p.F294F	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	491						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		GCTAGGAATTTGATCCGGAAG	0.403													7	42					0	0	1	0	0
OCLN	4950	broad.mit.edu	37	5	68805379	68805379	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:68805379G>A	uc003jwu.2	+	3	898	c.462G>A	c.(460-462)GTG>GTA	p.V154V	OCLN_uc003jwv.3_Silent_p.V154V	NM_002538	NP_002529			occludin												0		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		CCGCGTTGGTGATCTTTGTTA	0.393													7	64					0	0	1	0	0
MAP1B	4131	broad.mit.edu	37	5	71495673	71495673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:71495673C>T	uc003kbw.3	+	5	6732	c.6491C>T	c.(6490-6492)CCG>CTG	p.P2164L	MAP1B_uc010iyw.1_Missense_Mutation_p.P2181L|MAP1B_uc010iyx.1_Missense_Mutation_p.P2038L|MAP1B_uc010iyy.1_Missense_Mutation_p.P2038L	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	2164						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		GATGTTCCCCCGGAGACTGAA	0.577													8	38					0	0	1	0	0
ZNF366	167465	broad.mit.edu	37	5	71743079	71743079	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:71743079G>A	uc003kce.1	-	4	1876	c.1690C>T	c.(1690-1692)CAT>TAT	p.H564Y		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	564					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		CCTTGGGAATGAAGGCCCCGC	0.502													5	51					0	0	1	0	0
ZNF366	167465	broad.mit.edu	37	5	71756757	71756757	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:71756757G>A	uc003kce.1	-	2	753	c.567C>T	c.(565-567)TTC>TTT	p.F189F		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	189					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		ACGAGGGCACGAAGAAGGGGA	0.687													10	97					0	0	1	0	0
ZNF366	167465	broad.mit.edu	37	5	71756878	71756878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:71756878G>A	uc003kce.1	-	2	632	c.446C>T	c.(445-447)CCC>CTC	p.P149L		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	149					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		CTGCTTGACGGGCTTGCCCCC	0.627													11	120					0	0	1	0	0
ZNF366	167465	broad.mit.edu	37	5	71756976	71756976	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:71756976G>A	uc003kce.1	-	2	534	c.348C>T	c.(346-348)TTC>TTT	p.F116F		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	116					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		GGGGCTGCGGGAACAGCAAAG	0.582													27	165					0	0	1	0	0
SV2C	22987	broad.mit.edu	37	5	75580986	75580986	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:75580986G>A	uc003kei.1	+	5	1048	c.914_splice	c.e5-1	p.G305_splice		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C						neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		TCCTTTTCCAGGGTGGAGCTT	0.577													7	85					0	0	1	0	0
BHMT2	23743	broad.mit.edu	37	5	78376624	78376624	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:78376624G>A	uc003kft.2	+	4	396	c.373G>A	c.(373-375)GAA>AAA	p.E125K	BHMT2_uc011cth.1_Intron	NM_017614	NP_060084	Q9H2M3	BHMT2_HUMAN	betaine-homocysteine methyltransferase 2	125	Hcy-binding.				methionine biosynthetic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00063)|Lung NSC(167;0.00171)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;2.09e-45)|Epithelial(54;9.3e-41)|all cancers(79;4.09e-36)	L-Methionine(DB00134)	CCAGAAGGATGAAGCTAGAAT	0.453													4	44					0	0	1	0	0
MSH3	4437	broad.mit.edu	37	5	80021296	80021296	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:80021296C>T	uc003kgz.2	+	9	1618	c.1365C>T	c.(1363-1365)GTC>GTT	p.V455V		NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	455					maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		GAATTCGAGTCGAAAGGATGG	0.343								MMR					4	29					0	0	1	0	0
RASGRF2	5924	broad.mit.edu	37	5	80382720	80382720	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:80382720C>T	uc003kha.1	+	9	1338	c.1338C>T	c.(1336-1338)ATC>ATT	p.I446I	RASGRF2_uc011ctn.1_RNA|RASGRF2_uc003khb.1_Silent_p.I274I	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	446					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		AAAGAATGATCGTGGAGGGCT	0.507													9	53					0	0	1	0	0
RASGRF2	5924	broad.mit.edu	37	5	80497233	80497233	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:80497233G>A	uc003kha.1	+	19	2878	c.2878G>A	c.(2878-2880)GAA>AAA	p.E960K	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	960					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		TCTTCCCCAAGAAAGGAAAGC	0.418													4	56					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90101239	90101239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:90101239G>A	uc003kju.2	+	72	14896	c.14800G>A	c.(14800-14802)GAA>AAA	p.E4934K	GPR98_uc003kjt.2_Missense_Mutation_p.E2640K|GPR98_uc003kjw.2_Missense_Mutation_p.E595K	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4934	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGAAATTCCTGAATTCATTGT	0.458													8	28					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90124979	90124979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:90124979G>A	uc003kju.2	+	77	16683	c.16587G>A	c.(16585-16587)ATG>ATA	p.M5529I	GPR98_uc003kjt.2_Missense_Mutation_p.M3235I|GPR98_uc003kjw.2_Missense_Mutation_p.M1190I	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5529	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CAGGACTAATGATGTCTGTTA	0.423													12	52					0	0	1	0	0
C5orf36	285600	broad.mit.edu	37	5	93856010	93856010	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:93856010G>A	uc011cuk.1	-	5	1170	c.913C>T	c.(913-915)CGT>TGT	p.R305C	C5orf36_uc003kkp.2_Missense_Mutation_p.R305C	NM_001145678	NP_001139150	Q8IV33	K0825_HUMAN	hypothetical protein LOC285600 isoform 1	305											0		all_cancers(142;2.12e-08)|all_epithelial(76;5.95e-11)|all_lung(232;0.000996)|Lung NSC(167;0.0108)|Ovarian(174;0.0218)|Colorectal(57;0.0329)|Breast(839;0.214)|Lung SC(612;0.236)		all cancers(79;3.96e-19)		TTAACCACACGAACAGCATTT	0.358													5	19					0	0	1	0	0
RHOBTB3	22836	broad.mit.edu	37	5	95091130	95091130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:95091130C>T	uc003klm.2	+	6	1250	c.713C>T	c.(712-714)TCA>TTA	p.S238L	RHOBTB3_uc003klk.1_Missense_Mutation_p.S32L	NM_014899	NP_055714	O94955	RHBT3_HUMAN	rho-related BTB domain containing 3	238					retrograde transport, endosome to Golgi	Golgi apparatus	ATP binding|ATPase activity|Rab GTPase binding			lung(1)|skin(1)	2		all_cancers(142;2.58e-06)|all_epithelial(76;4.19e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0164)|Colorectal(57;0.0846)|Breast(839;0.198)		all cancers(79;8.79e-16)		GCTGAAGCGTCACATTATAAC	0.358													16	72					0	0	1	0	0
ERAP1	51752	broad.mit.edu	37	5	96124372	96124372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:96124372C>T	uc003kmm.2	-	11	1888	c.1541G>A	c.(1540-1542)GGG>GAG	p.G514E	ERAP1_uc003kml.2_Missense_Mutation_p.G514E|ERAP1_uc010jbm.1_Missense_Mutation_p.G326E|ERAP1_uc003kmn.2_Missense_Mutation_p.G514E	NM_001040458	NP_001035548	Q9NZ08	ERAP1_HUMAN	type 1 tumor necrosis factor receptor shedding	514	Lumenal (Potential).			G -> R (in Ref. 3; AAF20384).	angiogenesis|antigen processing and presentation of endogenous peptide antigen via MHC class I|fat cell differentiation|membrane protein ectodomain proteolysis|regulation of blood pressure|regulation of innate immune response|response to bacterium	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region|integral to membrane	aminopeptidase activity|interleukin-1, Type II receptor binding|interleukin-6 receptor binding|metalloexopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		all_cancers(142;1.75e-06)|all_epithelial(76;3.08e-09)|all_lung(232;0.000435)|Lung NSC(167;0.000601)|Ovarian(225;0.024)|Colorectal(57;0.0432)|Breast(839;0.244)		all cancers(79;7.26e-15)|COAD - Colon adenocarcinoma(37;0.071)		CACATCCACCCCTTCCTGATG	0.458													3	22					0	0	1	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100147721	100147722	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:100147721_100147722GG>AA	uc003knk.2	-	5	1237_1238	c.909_910CC>TT	c.(907-912)TTCCCT>TTTTCT	p.P304S		NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	304	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		AAATCCTTAGGGAAGGGCCAGA	0.381													4	27					0	0	1	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101572567	101572568	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:101572567_101572568CT>TC	uc003knm.2	-	13	2456_2457	c.2169_2170AG>GA	c.(2167-2172)GAAGGG>GAGAGG	p.G724R		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	724	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		CCATTTCACCCTTCTTTTACTA	0.371													3	5					0	0	1	0	0
APC	324	broad.mit.edu	37	5	112178722	112178722	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:112178722C>T	uc010jby.2	+	16	7811	c.7431C>T	c.(7429-7431)TCC>TCT	p.S2477S	APC_uc011cvt.1_Silent_p.S2459S|APC_uc003kpz.3_Silent_p.S2477S|APC_uc003kpy.3_Silent_p.S2477S|APC_uc010jbz.2_Silent_p.S2194S|APC_uc010jca.2_Silent_p.S1777S	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	2477	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		CCACTAGGTCCCAGGCACAAA	0.458		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			5	20					0	0	1	0	0
TRIM36	55521	broad.mit.edu	37	5	114483010	114483010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:114483010C>T	uc003kqs.2	-	3	889	c.380G>A	c.(379-381)CGA>CAA	p.R127Q	TRIM36_uc011cwc.1_Missense_Mutation_p.R115Q|TRIM36_uc003kqt.2_5'UTR	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	127						acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		ATTGATTCCTCGTTCTCCAAG	0.463													12	78					0	0	1	0	0
CDO1	1036	broad.mit.edu	37	5	115152029	115152029	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:115152029G>A	uc003krg.2	-	1	377	c.66C>T	c.(64-66)CTC>CTT	p.L22L		NM_001801	NP_001792	Q16878	CDO1_HUMAN	cysteine dioxygenase	22					inflammatory response|sulfur amino acid biosynthetic process|taurine biosynthetic process	cytosol	cysteine dioxygenase activity			large_intestine(1)|skin(1)	2		all_cancers(142;0.0046)|all_epithelial(76;0.000161)|Prostate(80;0.0132)|Ovarian(225;0.0776)		OV - Ovarian serous cystadenocarcinoma(64;7.8e-08)|Epithelial(69;7.32e-07)|all cancers(49;3.24e-05)	L-Cysteine(DB00151)|NADH(DB00157)	CGCCGGCAAAGAGCTGGTGCA	0.612													7	155					0	0	1	0	0
AQPEP	206338	broad.mit.edu	37	5	115298574	115298574	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:115298574G>A	uc003kro.2	+	1	424	c.260G>A	c.(259-261)TGG>TAG	p.W87*	AQPEP_uc003krp.2_RNA|uc003krn.1_5'UTR	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	87	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						CCGAGCAACTGGCGACCCCCG	0.692													5	41					0	0	1	0	0
FAM170A	340069	broad.mit.edu	37	5	118970426	118970426	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:118970426G>A	uc003ksm.2	+	3	1193	c.983G>A	c.(982-984)AGG>AAG	p.R328K	FAM170A_uc003ksl.2_Intron|FAM170A_uc003ksn.2_Missense_Mutation_p.R328K|FAM170A_uc003kso.2_Missense_Mutation_p.R281K	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	328						intracellular	zinc ion binding			skin(1)	1						CCAAAGGACAGGAAGTGAGCA	0.483													9	29					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121759141	121759141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:121759141G>A	uc003ksw.1	+	4	915	c.709G>A	c.(709-711)GAG>AAG	p.E237K	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Missense_Mutation_p.E237K|SNCAIP_uc003ksx.1_Missense_Mutation_p.E284K|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Missense_Mutation_p.E237K	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	237					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		TGAAGAAACCGAGATCTCACC	0.458													6	19					0	0	1	0	0
SNCAIP	9627	broad.mit.edu	37	5	121786522	121786522	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:121786522G>A	uc003ksw.1	+	10	2186	c.1980G>A	c.(1978-1980)AGG>AGA	p.R660R	SNCAIP_uc011cwl.1_Silent_p.R218R|SNCAIP_uc003ksx.1_Silent_p.R707R|SNCAIP_uc003ksy.1_Silent_p.R294R|SNCAIP_uc003ksz.1_Silent_p.R294R|SNCAIP_uc010jcu.2_Silent_p.R256R|SNCAIP_uc011cwm.1_Silent_p.R294R|SNCAIP_uc003kta.1_Silent_p.R292R|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Silent_p.R354R|SNCAIP_uc010jcx.1_Silent_p.R600R|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Silent_p.R176R	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	660					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		TGGAGAAGAGGGAACTGAAGT	0.483													4	21					0	0	1	0	0
ALDH7A1	501	broad.mit.edu	37	5	125887820	125887820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:125887820G>A	uc003ktx.2	-	14	1402	c.1210C>T	c.(1210-1212)CGC>TGC	p.R404C	ALDH7A1_uc003ktv.2_Missense_Mutation_p.R25C|ALDH7A1_uc003kty.2_RNA|ALDH7A1_uc011cxa.1_Missense_Mutation_p.R367C	NM_001182	NP_001173	P49419	AL7A1_HUMAN	aldehyde dehydrogenase 7 family, member A1	404					cellular aldehyde metabolic process|lysine catabolic process|sensory perception of sound	cytosol|mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity|betaine-aldehyde dehydrogenase activity|L-aminoadipate-semialdehyde dehydrogenase activity			kidney(2)|ovary(1)	3		all_cancers(142;0.24)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.0584)|Kidney(363;0.0934)	Epithelial(69;0.0417)|OV - Ovarian serous cystadenocarcinoma(64;0.068)|all cancers(49;0.109)	NADH(DB00157)|Pyridoxine(DB00165)	TTTCCAGGGCGATCCATAACC	0.398													4	12					0	0	1	0	0
SLC12A2	6558	broad.mit.edu	37	5	127477568	127477568	+	Silent	SNP	C	T	T	rs111727169	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:127477568C>T	uc003kus.2	+	10	1832	c.1668C>T	c.(1666-1668)ATC>ATT	p.I556I	SLC12A2_uc010jdf.2_RNA|SLC12A2_uc010jdg.2_Silent_p.I556I	NM_001046	NP_001037	P55011	S12A2_HUMAN	solute carrier family 12	556	Extracellular (Potential).				potassium ion transport|sodium ion transport|transepithelial ammonium transport|transepithelial chloride transport	integral to plasma membrane|membrane fraction	ammonia transmembrane transporter activity|sodium:potassium:chloride symporter activity			ovary(3)	3		all_cancers(142;0.0972)|Prostate(80;0.151)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0433)|OV - Ovarian serous cystadenocarcinoma(64;0.0978)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	ATGACACTATCGTAACAGAGC	0.363													4	33					0	0	1	0	0
SLC27A6	28965	broad.mit.edu	37	5	128301981	128301981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:128301981G>A	uc003kuy.2	+	2	547	c.151G>A	c.(151-153)GGG>AGG	p.G51R	SLC27A6_uc003kuz.2_Missense_Mutation_p.G51R	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	51					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		TGAAAAGAGAGGGGAGCTGGT	0.443													7	79					0	0	1	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129030501	129030501	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:129030501G>A	uc003kvb.1	+	19	2889	c.2889G>A	c.(2887-2889)AAG>AAA	p.K963K	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	963	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		ACTTAACCAAGCCAGAGCCAC	0.398													3	25					0	0	1	0	0
HSPA4	3308	broad.mit.edu	37	5	132439672	132439672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:132439672C>T	uc003kyj.2	+	18	2554	c.2273C>T	c.(2272-2274)ACC>ATC	p.T758I		NM_002154	NP_002145	P34932	HSP74_HUMAN	heat shock 70kDa protein 4	758					cellular chaperone-mediated protein complex assembly|protein import into mitochondrial outer membrane|response to unfolded protein	cytoplasm|nucleus	ATP binding			lung(1)|breast(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CAGAGTTTGACCATGGATCCA	0.338													6	33					0	0	1	0	0
DDX46	9879	broad.mit.edu	37	5	134121243	134121243	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:134121243C>T	uc003kzw.2	+	11	1599	c.1431C>T	c.(1429-1431)GTC>GTT	p.V477V	DDX46_uc003kzv.1_RNA	NM_014829	NP_055644	Q7L014	DDX46_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	477	Helicase ATP-binding.				mRNA processing|RNA splicing	Cajal body|nuclear speck	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TTAGAGTGGTCTGTGTTTACG	0.368													4	57					0	0	1	0	0
CATSPER3	347732	broad.mit.edu	37	5	134332079	134332079	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:134332079C>T	uc003lag.2	+	3	437	c.369C>T	c.(367-369)ATC>ATT	p.I123I		NM_178019	NP_821138	Q86XQ3	CTSR3_HUMAN	cation channel, sperm associated 3	123	Helical; Name=Segment S3; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCATTATCATCGTTATGTTTT	0.483													6	34					0	0	1	0	0
SMAD5	4090	broad.mit.edu	37	5	135508252	135508252	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:135508252C>A	uc003lbj.1	+	7	1349	c.905C>A	c.(904-906)CCT>CAT	p.P302H	SMAD5_uc003lbk.1_Missense_Mutation_p.P302H|SMAD5_uc003lbl.1_Missense_Mutation_p.P302H	NM_001001419	NP_001001419	Q99717	SMAD5_HUMAN	SMAD family member 5	302	MH2.				BMP signaling pathway|embryonic pattern specification|positive regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytosol|integral to membrane|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity|ubiquitin protein ligase binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TTCACAGATCCTTCAAATAAC	0.338													4	28					0.014758	0.0148732	1	1	0
TRPC7	57113	broad.mit.edu	37	5	135587504	135587504	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:135587504C>T	uc003lbn.1	-	5	1412	c.1409G>A	c.(1408-1410)TGG>TAG	p.W470*	TRPC7_uc010jef.1_Nonsense_Mutation_p.W407*|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Nonsense_Mutation_p.W401*|TRPC7_uc010jei.1_Nonsense_Mutation_p.W346*|TRPC7_uc010jej.1_Nonsense_Mutation_p.W22*	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	471	Helical; (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TAGCAGGTTCCACAAGTGCAG	0.567													9	33					0	0	1	0	0
KLHL3	26249	broad.mit.edu	37	5	136964008	136964008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:136964008C>T	uc010jek.2	-	13	2013	c.1569G>A	c.(1567-1569)ATG>ATA	p.M523I	KLHL3_uc011cyc.1_Missense_Mutation_p.M258I|KLHL3_uc003lbr.3_Missense_Mutation_p.M441I|KLHL3_uc011cyd.1_RNA	NM_017415	NP_059111	Q9UH77	KLHL3_HUMAN	kelch-like 3	523	Kelch 5.					cytoplasm|cytoskeleton	actin binding|structural molecule activity				0		all_hematologic(541;3.67e-07)|Breast(839;7.61e-05)|Prostate(281;0.000825)|Ovarian(839;0.0481)|all_lung(232;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	GBM - Glioblastoma multiforme(465;0.0223)		GGCACATGTTCATGTCTGCCA	0.542													8	104					0	0	1	0	0
KIF20A	10112	broad.mit.edu	37	5	137519947	137519947	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:137519947C>T	uc003lcj.2	+	12	1868	c.1372C>T	c.(1372-1374)CCC>TCC	p.P458S	KIF20A_uc011cyo.1_Missense_Mutation_p.P440S	NM_005733	NP_005724	O95235	KI20A_HUMAN	kinesin family member 20A	458	Kinesin-motor.				cytokinesis|M phase of mitotic cell cycle|microtubule-based movement|protein transport|vesicle-mediated transport	Golgi apparatus|microtubule|nucleoplasm	ATP binding|microtubule motor activity|protein binding|transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			GAACCTGGTTCCCTTCCGTGA	0.517													17	73					0	0	1	0	0
GFRA3	2676	broad.mit.edu	37	5	137593341	137593341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:137593341C>T	uc003lcn.2	-	4	912	c.772G>A	c.(772-774)GAC>AAC	p.D258N	GFRA3_uc003lco.2_Missense_Mutation_p.D227N	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	258					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CAAAGCGGGTCGGAGAAGCAG	0.692													5	19					0	0	1	0	0
GFRA3	2676	broad.mit.edu	37	5	137593450	137593450	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:137593450G>A	uc003lcn.2	-	4	803	c.663C>T	c.(661-663)GCC>GCT	p.A221A	GFRA3_uc003lco.2_Silent_p.A190A	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	221					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			GGTCGTTGGGGGCACATGGGC	0.726													7	37					0	0	1	0	0
KDM3B	51780	broad.mit.edu	37	5	137727195	137727195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:137727195C>T	uc003lcy.1	+	8	2074	c.1874C>T	c.(1873-1875)CCC>CTC	p.P625L	KDM3B_uc010jew.1_Missense_Mutation_p.P281L|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	625					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						TTTTTACAGCCCCCCAAATTG	0.498													6	87					0	0	1	0	0
KDM3B	51780	broad.mit.edu	37	5	137733918	137733918	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:137733918C>T	uc003lcy.1	+	10	3083	c.2883C>T	c.(2881-2883)CCC>CCT	p.P961P	KDM3B_uc010jew.1_Silent_p.P617P|KDM3B_uc011cys.1_5'UTR	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	961					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						TTTTAAGCCCCCAGCAAAGTG	0.478													6	90					0	0	1	0	0
EGR1	1958	broad.mit.edu	37	5	137802694	137802694	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:137802694C>T	uc003ldb.1	+	2	826	c.556C>T	c.(556-558)CAG>TAG	p.Q186*	EGR1_uc011cyu.1_Intron	NM_001964	NP_001955	P18146	EGR1_HUMAN	early growth response 1	186					cellular response to heparin|cellular response to mycophenolic acid|glomerular mesangial cell proliferation|interleukin-1-mediated signaling pathway|positive regulation of glomerular metanephric mesangial cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of protein sumoylation|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytoplasm|nucleus	histone acetyltransferase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CTCCGCCTCCCAGAGCCCACC	0.637													7	134					0	0	1	0	0
CXXC5	51523	broad.mit.edu	37	5	139060858	139060858	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:139060858C>T	uc010jfg.1	+	2	1040	c.750C>T	c.(748-750)GCC>GCT	p.A250A	CXXC5_uc003let.2_Silent_p.A250A	NM_016463	NP_057547	Q7LFL8	CXXC5_HUMAN	CXXC finger 5	250					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|nucleus	DNA binding|signal transducer activity|zinc ion binding			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGAGCTGGCCTCTGCCATCA	0.647													4	71					0	0	1	0	0
PSD2	84249	broad.mit.edu	37	5	139218319	139218319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:139218319C>T	uc003leu.1	+	13	2135	c.1930C>T	c.(1930-1932)CGG>TGG	p.R644W		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	644					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAGTTCTGTCGGCCCCTGCT	0.617													7	37					0	0	1	0	0
CD14	929	broad.mit.edu	37	5	140011608	140011608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140011608C>T	uc003lgi.1	-	2	1315	c.961G>A	c.(961-963)GTG>ATG	p.V321M	CD14_uc003lgj.1_Missense_Mutation_p.V321M	NM_000591	NP_000582	P08571	CD14_HUMAN	CD14 antigen precursor	321	LRR 10.				apoptosis|cellular response to lipopolysaccharide|cellular response to lipoteichoic acid|inflammatory response|innate immune response|phagocytosis|positive regulation of tumor necrosis factor production|Toll signaling pathway	anchored to membrane|plasma membrane	lipopolysaccharide binding|lipoteichoic acid binding|opsonin receptor activity|peptidoglycan receptor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGTTATCCACCTCGGGCAGC	0.627													4	19					0	0	1	0	0
PCDHA1	56147	broad.mit.edu	37	5	140166824	140166824	+	Missense_Mutation	SNP	G	A	A	rs143010606		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140166824G>A	uc003lhb.2	+	1	949	c.949G>A	c.(949-951)GAA>AAA	p.E317K	PCDHA1_uc003lha.2_Missense_Mutation_p.E317K|PCDHA1_uc003lgz.2_Missense_Mutation_p.E317K	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	317	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding	p.E317K(1)		skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAATCCTACGAAATTCAAGT	0.353													9	47					0	0	1	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167831	140167831	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140167831G>A	uc003lhb.2	+	1	1956	c.1956G>A	c.(1954-1956)AAG>AAA	p.K652K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lgz.2_Silent_p.K652K	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	652	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCTAGTGAAGGATCACGGTG	0.657													9	48					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181151	140181151	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140181151G>A	uc003lhf.2	+	1	369	c.369G>A	c.(367-369)GTG>GTA	p.V123V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.V123V	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	123	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGTGGAAGTGAAGGACATTA	0.557													21	120					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188055	140188055	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140188055G>A	uc003lhi.2	+	1	1384	c.1283G>A	c.(1282-1284)CGA>CAA	p.R428Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.R428Q|PCDHA4_uc011daa.1_Missense_Mutation_p.R428Q	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	428	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGACCGCGCGAGACGGGGGC	0.617													21	107					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188109	140188109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140188109C>T	uc003lhi.2	+	1	1438	c.1337C>T	c.(1336-1338)GCT>GTT	p.A446V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.A446V|PCDHA4_uc011daa.1_Missense_Mutation_p.A446V	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	446	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGGAGGTGGCTGATGTGAAC	0.642													12	73					0	0	1	0	0
PCDHA6	56142	broad.mit.edu	37	5	140207695	140207695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140207695G>A	uc003lho.2	+	1	46	c.19G>A	c.(19-21)GAT>AAT	p.D7N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.D7N|PCDHA6_uc011dab.1_Missense_Mutation_p.D7N	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	7					homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TACCCCGGAGGATAGATTGGG	0.488													16	112					0	0	1	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208757	140208757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140208757G>A	uc003lho.2	+	1	1108	c.1081G>A	c.(1081-1083)GAA>AAA	p.E361K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.E361K|PCDHA6_uc011dab.1_Missense_Mutation_p.E361K	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	361	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCTGTACGTGAAGACGCTCA	0.507													11	88					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140220999	140220999	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140220999C>T	uc003lhs.2	+	1	93	c.93C>T	c.(91-93)CTC>CTT	p.L31L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.L31L	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	31	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGGCCAGCTCCACTACTCCG	0.637													10	42					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222521	140222521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140222521G>A	uc003lhs.2	+	1	1615	c.1615G>A	c.(1615-1617)GAC>AAC	p.D539N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.D539N	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	539	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCGCGCGCGACGCGGGCGT	0.672													10	137					0	0	1	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222821	140222821	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140222821G>A	uc003lhs.2	+	1	1915	c.1915G>A	c.(1915-1917)GAA>AAA	p.E639K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.E639K	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	639	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTCCTGGACGAAGCGGACTC	0.647													7	103					0	0	1	0	0
PCDHA9	9752	broad.mit.edu	37	5	140229679	140229679	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140229679C>T	uc003lhu.2	+	1	2323	c.1599C>T	c.(1597-1599)TTC>TTT	p.F533F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.F533F	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	533	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCTACAGTTCCAGGTGAGCG	0.677													11	136					0	0	1	0	0
PCDHA11	56138	broad.mit.edu	37	5	140248996	140248996	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140248996G>A	uc003lia.2	+	1	1166	c.308G>A	c.(307-309)AGC>AAC	p.S103N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.S103N	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	103	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGGAGTGCAGCATCCACCTG	0.562													38	205					0	0	1	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140306915	140306915	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140306915G>A	uc003lih.2	+	1	614	c.438G>A	c.(436-438)CCG>CCA	p.P146P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Silent_p.P146P	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	146	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTACTCTCCCGAATGCCCAAG	0.592													7	62					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431258	140431258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140431258C>T	uc003lik.1	+	1	280	c.203C>T	c.(202-204)TCC>TTC	p.S68F		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	68	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGGCTGGTTTCCGAGGGCAAC	0.582													5	56					0	0	1	0	0
PCDHB4	56131	broad.mit.edu	37	5	140503308	140503308	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140503308C>T	uc003lip.1	+	1	1728	c.1728C>T	c.(1726-1728)CCC>CCT	p.P576P		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	576	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCTGGTGCCCCGGGCGGCCG	0.701													10	82					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558932	140558932	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140558932C>T	uc011dai.1	+	1	1503	c.1317C>T	c.(1315-1317)ACC>ACT	p.T439T	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	439	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCAATATGACCGTGCTGGTGT	0.567													8	99					0	0	1	0	0
PCDHB16	57717	broad.mit.edu	37	5	140562585	140562585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140562585G>A	uc003liv.2	+	1	1606	c.451G>A	c.(451-453)GAG>AAG	p.E151K	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	151	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCTAGGAACTGAGTTCCCTCT	0.403													4	25					0	0	1	0	0
PCDHB16	57717	broad.mit.edu	37	5	140564092	140564092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140564092C>T	uc003liv.2	+	1	3113	c.1958C>T	c.(1957-1959)TCG>TTG	p.S653L	PCDHB9_uc003liw.1_5'Flank	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	653	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTCCGCGCTCGGCCACCGCC	0.711													6	64					0	0	1	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573155	140573155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140573155C>T	uc003lix.2	+	1	1204	c.1030C>T	c.(1030-1032)CCC>TCC	p.P344S		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	344	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAATGACAATCCCCCTGAACT	0.418													7	72					0	0	1	0	0
PCDHB10	56126	broad.mit.edu	37	5	140574446	140574446	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140574446C>T	uc003lix.2	+	1	2495	c.2321C>T	c.(2320-2322)TCG>TTG	p.S774L		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	774	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCAGTTATTTCGGATATTCAG	0.488													7	46					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140579977	140579977	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140579977C>T	uc003liy.2	+	1	630	c.630C>T	c.(628-630)TTC>TTT	p.F210F	PCDHB11_uc011daj.1_Intron	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	210	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCTCAGTTTCATCCTCTCTG	0.493													8	34					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580206	140580206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140580206G>A	uc003liy.2	+	1	859	c.859G>A	c.(859-861)GAT>AAT	p.D287N	PCDHB11_uc011daj.1_5'UTR	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	287	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCCTCAGAAGATATTCGCAA	0.368													11	94					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140581575	140581575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140581575G>A	uc003liy.2	+	1	2228	c.2228G>A	c.(2227-2229)GGG>GAG	p.G743E	PCDHB11_uc011daj.1_Missense_Mutation_p.G378E	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	743	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCGGCACCGGGACCCTTTCC	0.602													21	98					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140581704	140581704	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140581704A>T	uc003liy.2	+	1	2357	c.2357A>T	c.(2356-2358)AAC>ATC	p.N786I	PCDHB11_uc011daj.1_Missense_Mutation_p.N421I	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	786	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGTGAAGAAAACTCCACCTTT	0.338													7	26					0	0	1	0	0
PCDHB12	56124	broad.mit.edu	37	5	140590287	140590287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140590287C>T	uc003liz.2	+	1	1997	c.1808C>T	c.(1807-1809)TCG>TTG	p.S603L	PCDHB12_uc011dak.1_Missense_Mutation_p.S266L	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	603	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCTGGCTGTCGTACCAGCTG	0.726													9	173					0	0	1	0	0
PCDHB12	56124	broad.mit.edu	37	5	140590499	140590499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140590499C>T	uc003liz.2	+	1	2209	c.2020C>T	c.(2020-2022)CCG>TCG	p.P674S	PCDHB12_uc011dak.1_Missense_Mutation_p.P337S	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	674	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTGCCTCTCCCGGAGGCGGC	0.692													17	70					0	0	1	0	0
PCDHB12	56124	broad.mit.edu	37	5	140590839	140590839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140590839C>T	uc003liz.2	+	1	2549	c.2360C>T	c.(2359-2361)CCC>CTC	p.P787L	PCDHB12_uc011dak.1_Missense_Mutation_p.P450L|PCDHB13_uc003lja.1_5'Flank	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	787	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAAGAAAATCCCCCATTTCAG	0.373													6	30					0	0	1	0	0
PCDHB13	56123	broad.mit.edu	37	5	140595048	140595048	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140595048C>T	uc003lja.1	+	1	1540	c.1353C>T	c.(1351-1353)TTC>TTT	p.F451F		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	451	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTCCCGCCTTCACCCAAACCT	0.572													7	90					0	0	1	0	0
PCDHB13	56123	broad.mit.edu	37	5	140595072	140595072	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140595072C>T	uc003lja.1	+	1	1564	c.1377C>T	c.(1375-1377)TTC>TTT	p.F459F		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	459	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACACCCTGTTCGTCCGCGAGA	0.602													11	89					0	0	1	0	0
PCDHB13	56123	broad.mit.edu	37	5	140595678	140595678	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140595678C>T	uc003lja.1	+	1	2170	c.1983C>T	c.(1981-1983)CTC>CTT	p.L661L		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	661	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCACGTGCTCCTGGTGGACG	0.711													8	83					0	0	1	0	0
PCDHB13	56123	broad.mit.edu	37	5	140595819	140595819	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140595819C>T	uc003lja.1	+	1	2311	c.2124C>T	c.(2122-2124)TTC>TTT	p.F708F		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	708	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCTCCTGTTCGTGGCGGTGC	0.677													12	162					0	0	1	0	0
PCDHB18	54660	broad.mit.edu	37	5	140615806	140615806	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140615806C>T	uc003ljc.1	+	1	1869	c.1521C>T	c.(1519-1521)TTC>TTT	p.F507F		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						ACTCGCCCTTCGTGCTGTACC	0.716													5	49					0	0	1	0	0
PCDHB18	54660	broad.mit.edu	37	5	140616263	140616263	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140616263C>T	uc003ljc.1	+	1	2326	c.1978C>T	c.(1978-1980)CTG>TTG	p.L660L		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						GGCGGTGCGGCTGTGCAGGAG	0.672													8	156					0	0	1	0	0
PCDHB15	56121	broad.mit.edu	37	5	140626178	140626178	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140626178C>T	uc003lje.2	+	1	1032	c.1032C>T	c.(1030-1032)TTC>TTT	p.F344F		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	344	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACGATAACTTCCCGGAACTAA	0.458													4	63					0	0	1	0	0
SLC25A2	83884	broad.mit.edu	37	5	140683343	140683343	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140683343G>A	uc003ljf.2	-	1	270	c.90C>T	c.(88-90)TTC>TTT	p.F30F		NM_031947	NP_114153	Q9BXI2	ORNT2_HUMAN	solute carrier family 25 member 2	30	Solcar 1.				mitochondrial ornithine transport|urea cycle	integral to membrane|mitochondrial inner membrane	L-ornithine transmembrane transporter activity			ovary(1)	1		all_lung(500;0.000249)|Lung NSC(810;0.0011)|Ovarian(839;0.00556)|Breast(839;0.0173)|all_hematologic(541;0.152)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00204)	L-Ornithine(DB00129)	TTATTGTGTCGAAGGGCTGCC	0.597													6	38					0	0	1	0	0
TAF7	6879	broad.mit.edu	37	5	140699256	140699256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140699256C>T	uc003ljg.2	-	1	1096	c.356G>A	c.(355-357)AGC>AAC	p.S119N		NM_005642	NP_005633	Q15545	TAF7_HUMAN	TATA box-binding protein-associated factor 2F	119					negative regulation of histone acetylation|negative regulation of protein kinase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|spermine transport|transcription initiation from RNA polymerase II promoter	Golgi apparatus|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	histone acetyltransferase binding|thyroid hormone receptor binding|transcription coactivator activity|transcription regulatory region DNA binding|vitamin D receptor binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTTTTCTTGCTTGCTTTAGG	0.438													5	81					0	0	1	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140710476	140710476	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140710476C>T	uc003lji.1	+	1	225	c.225C>T	c.(223-225)TTC>TTT	p.F75F	PCDHGA1_uc011dan.1_Silent_p.F75F	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	75	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCCGCTTTTCGCTCTGAATC	0.582													9	114					0	0	1	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711950	140711950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140711950C>T	uc003lji.1	+	1	1699	c.1699C>T	c.(1699-1701)CTC>TTC	p.L567F	PCDHGA1_uc011dan.1_Missense_Mutation_p.L567F	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	567	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTACCCCGCCCTCCCCACAGA	0.672													17	105					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719074	140719074	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140719074C>T	uc003ljk.1	+	1	721	c.536C>T	c.(535-537)TCC>TTC	p.S179F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.S179F	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	179	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACCACTTCTCCCTGGACGTG	0.557													5	59					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719964	140719964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140719964G>A	uc003ljk.1	+	1	1611	c.1426G>A	c.(1426-1428)GCC>ACC	p.A476T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.A476T	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	476	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCAGTGACGGCCCATGACCC	0.542													7	66					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720293	140720293	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140720293C>T	uc003ljk.1	+	1	1940	c.1755C>T	c.(1753-1755)GGC>GGT	p.G585G	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.G585G	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	585	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGAGCCCGGCTACCTGGTGA	0.667													8	99					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720640	140720640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140720640C>T	uc003ljk.1	+	1	2287	c.2102C>T	c.(2101-2103)TCC>TTC	p.S701F	PCDHGA1_uc003lji.1_Intron|PCDHGA3_uc003ljm.1_5'Flank|PCDHGA3_uc010jfx.1_5'Flank|PCDHGA2_uc011dao.1_Missense_Mutation_p.S701F|PCDHGA3_uc011dap.1_5'Flank	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	701	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCGCGGTCTCCTGCGTCTTC	0.662													9	127					0	0	1	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725839	140725839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140725839C>T	uc003ljm.1	+	1	2239	c.2239C>T	c.(2239-2241)CGG>TGG	p.R747W	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.R507W|PCDHGA3_uc011dap.1_Missense_Mutation_p.R747W	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	747	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACGGGGTTCGGGCTTTCCT	0.657													10	94					0	0	1	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140731807	140731807	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140731807C>T	uc003ljo.1	+	1	1980	c.1980C>T	c.(1978-1980)TTC>TTT	p.F660F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA4_uc003ljq.1_5'Flank|PCDHGB1_uc011daq.1_Silent_p.F660F|PCDHGA4_uc003ljp.1_5'Flank	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	660	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCTAATCTTCGCGGATAGCC	0.657													6	76					0	0	1	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140734913	140734913	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140734913C>T	uc003ljq.1	+	1	146	c.146C>T	c.(145-147)GCC>GTC	p.A49V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.A49V	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	49	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCAACATCGCCAAGGACCTG	0.632													15	67					0	0	1	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140741975	140741975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140741975C>T	uc003ljs.1	+	1	2273	c.2273C>T	c.(2272-2274)TCA>TTA	p.S758L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGA5_uc003lju.1_5'Flank|PCDHGB2_uc011dar.1_Missense_Mutation_p.S758L|PCDHGA5_uc011das.1_5'Flank	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	758	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTGTTGCCTCACAATCAGCC	0.493													25	134					0	0	1	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140744741	140744741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140744741C>T	uc003lju.1	+	1	844	c.844C>T	c.(844-846)CGC>TGC	p.R282C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Missense_Mutation_p.R282C	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	282	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTACTCTTTTCGCAATGAAGA	0.453													4	43					0	0	1	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140750111	140750111	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140750111C>T	uc003ljw.1	+	1	150	c.150C>T	c.(148-150)CTC>CTT	p.L50L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Silent_p.L50L	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	50	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAGGGAACCTCGCCAAGGACC	0.537													7	96					0	0	1	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140754526	140754526	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140754526C>T	uc003ljy.1	+	1	876	c.876C>T	c.(874-876)TTC>TTT	p.F292F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Silent_p.F292F	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	292	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACAAATTTTCTGTTTGAATG	0.448													7	35					0	0	1	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140754586	140754586	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140754586G>A	uc003ljy.1	+	1	936	c.936G>A	c.(934-936)TCG>TCA	p.S312S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Silent_p.S312S	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	312	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGAGGACTCGAGTTTTTATG	0.393													17	110					0	0	1	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140769403	140769403	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140769403C>T	uc003lkc.1	+	1	1952	c.1952C>T	c.(1951-1953)CCA>CTA	p.P651L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.P651L	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	651	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACAGCCACCACTCTCGGCC	0.692													7	36					0	0	1	0	0
PCDHGB6	56100	broad.mit.edu	37	5	140790093	140790093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140790093C>T	uc003lkj.1	+	1	2324	c.2324C>T	c.(2323-2325)TCC>TTC	p.S775F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Missense_Mutation_p.S775F|PCDHGA10_uc011day.1_5'Flank|PCDHGA10_uc003lkl.1_5'Flank	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	775	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCCTACATTCCAATGAAGAC	0.438													7	77					0	0	1	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140801552	140801552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140801552C>T	uc003lkq.1	+	1	1016	c.758C>T	c.(757-759)CCA>CTA	p.P253L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Missense_Mutation_p.P253L|PCDHGA11_uc003lkp.1_Missense_Mutation_p.P253L	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	253	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGAGTGTTCCAGAAAACATC	0.488													19	119					0	0	1	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140802648	140802648	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140802648C>T	uc003lkq.1	+	1	2112	c.1854C>T	c.(1852-1854)TTC>TTT	p.F618F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Silent_p.F618F|PCDHGA11_uc003lkp.1_Silent_p.F618F	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	618	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGGGACTCTTCGCGGTGGGGG	0.662													7	55					0	0	1	0	0
PCDHGC4	56098	broad.mit.edu	37	5	140864861	140864861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:140864861G>A	uc003lky.1	+	1	121	c.121G>A	c.(121-123)GAA>AAA	p.E41K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Missense_Mutation_p.E41K	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	41	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGTCACAGGAAGGGACTTT	0.547													12	58					0	0	1	0	0
PCDH1	5097	broad.mit.edu	37	5	141248975	141248975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:141248975G>A	uc003llq.2	-	2	179	c.62C>T	c.(61-63)CCC>CTC	p.P21L	PCDH1_uc003llp.2_Missense_Mutation_p.P21L|PCDH1_uc011dbf.1_5'UTR	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	21					cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		CTCCATCCTGGGAGGCCCCAG	0.647													4	27					0	0	1	0	0
NR3C1	2908	broad.mit.edu	37	5	142779583	142779583	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:142779583G>A	uc003lmz.2	-	2	1314	c.822C>T	c.(820-822)CCC>CCT	p.P274P	NR3C1_uc003lmy.2_Silent_p.P274P|NR3C1_uc003lna.2_Silent_p.P274P|NR3C1_uc003lnb.2_Silent_p.P274P|NR3C1_uc011dbk.1_Intron|NR3C1_uc003lnc.2_Silent_p.P274P|NR3C1_uc003lnd.2_Silent_p.P274P|NR3C1_uc003lne.2_Silent_p.P274P|NR3C1_uc003lnf.2_Silent_p.P274P|NR3C1_uc003lng.2_Silent_p.P274P|NR3C1_uc003lnh.2_Silent_p.P274P|NR3C1_uc003lni.2_Silent_p.P274P	NM_000176	NP_000167	P04150	GCR_HUMAN	glucocorticoid receptor isoform alpha	274	Modulating.				chromatin modification|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus|transcription from RNA polymerase II promoter	mitochondrial matrix|nucleoplasm	glucocorticoid receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(2;3.2e-05)|all_hematologic(2;0.000361)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)		Amcinonide(DB00288)|Betamethasone(DB00443)|Budesonide(DB01222)|Dexamethasone(DB01234)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluticasone Propionate(DB00588)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mifepristone(DB00834)|Mometasone(DB00764)|Prednisone(DB00635)	TTTTCACTTGGGGCAGTGTTA	0.443													15	79					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145379844	145379844	+	Missense_Mutation	SNP	G	A	A	rs35453884	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:145379844G>A	uc003lnt.2	+	3	840	c.602G>A	c.(601-603)CGA>CAA	p.R201Q	SH3RF2_uc011dbl.1_Missense_Mutation_p.R201Q	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	201	SH3 2.						ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTCGACCTACGAGGCAAGGAC	0.592													5	23					0	0	1	0	0
PLAC8L1	153770	broad.mit.edu	37	5	145464086	145464086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:145464086G>A	uc003lnv.2	-	4	515	c.443C>T	c.(442-444)TCC>TTC	p.S148F	PLAC8L1_uc011dbp.1_RNA	NM_001029869	NP_001025040	A1L4L8	PL8L1_HUMAN	PLAC8-like 1	148											0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTGGCAGATGGAAAAAGCCCA	0.517													16	66					0	0	1	0	0
RBM27	54439	broad.mit.edu	37	5	145610271	145610271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:145610271C>T	uc003lnz.3	+	6	807	c.641C>T	c.(640-642)TCC>TTC	p.S214F	RBM27_uc003lny.2_Missense_Mutation_p.S214F	NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	214					mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTGGAGAGTTCCTATGTGCCT	0.448													6	50					0	0	1	0	0
DPYSL3	1809	broad.mit.edu	37	5	146775141	146775141	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:146775141C>T	uc003lon.1	-	13	1715	c.1605G>A	c.(1603-1605)CAG>CAA	p.Q535Q	DPYSL3_uc003loo.2_Silent_p.Q649Q	NM_001387	NP_001378	Q14195	DPYL3_HUMAN	dihydropyrimidinase-like 3	535					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol|growth cone	dihydropyrimidinase activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAAATCCCGACTGATGAAGAT	0.572													4	6					0	0	1	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147000285	147000285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:147000285C>T	uc003loq.1	-	18	2468	c.2086G>A	c.(2086-2088)GGC>AGC	p.G696S	JAKMIP2_uc011dbx.1_Missense_Mutation_p.G654S|JAKMIP2_uc003lor.1_Missense_Mutation_p.G675S|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.G696S	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	696	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCAGATAGCCTTTTATTTTG	0.373													9	29					0	0	1	0	0
SPINK5	11005	broad.mit.edu	37	5	147505304	147505304	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:147505304C>T	uc003lox.2	+	29	2831	c.2758C>T	c.(2758-2760)CGA>TGA	p.R920*	SPINK5_uc003loy.2_Nonsense_Mutation_p.R950*	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	920	Kazal-like 14.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGTGAATTTCGAAACTATAT	0.408													9	110					0	0	1	0	0
ARHGEF37	389337	broad.mit.edu	37	5	149001409	149001409	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:149001409G>A	uc003lra.1	+	9	1183	c.1119G>A	c.(1117-1119)CGG>CGA	p.R373R		NM_001001669	NP_001001669	A1IGU5	ARH37_HUMAN	hypothetical protein LOC389337	373	BAR.				regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0						ACTTTGAGCGGGTGGAAGAGA	0.612													8	83					0	0	1	0	0
CSF1R	1436	broad.mit.edu	37	5	149441075	149441075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:149441075C>T	uc003lrl.2	-	12	2032	c.1837G>A	c.(1837-1839)GTG>ATG	p.V613M	CSF1R_uc011dcd.1_Missense_Mutation_p.V465M|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Missense_Mutation_p.V613M	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	613	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	TTCACAGCCACCTTCAGGACA	0.622													7	76					0	0	1	0	0
CSF1R	1436	broad.mit.edu	37	5	149457738	149457738	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:149457738G>A	uc003lrl.2	-	4	861	c.666C>T	c.(664-666)ATC>ATT	p.I222I	CSF1R_uc011dcd.1_Silent_p.I74I|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Silent_p.I222I|CSF1R_uc011dce.1_Silent_p.I222I|CSF1R_uc011dcf.1_Silent_p.I222I	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	222	Extracellular (Potential).|Ig-like C2-type 3.				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	CTGAGCACACGATCTGGGCAG	0.582													16	61					0	0	1	0	0
ARSI	340075	broad.mit.edu	37	5	149677804	149677804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:149677804G>A	uc003lrv.2	-	2	1272	c.683C>T	c.(682-684)CCC>CTC	p.P228L		NM_001012301	NP_001012301	Q5FYB1	ARSI_HUMAN	arylsulfatase family, member I precursor	228						endoplasmic reticulum|extracellular region	arylsulfatase activity|metal ion binding	p.P228P(1)		ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAGGAAGAGGGGACGCTGAGG	0.637													7	26					0	0	1	0	0
MYOZ3	91977	broad.mit.edu	37	5	150052042	150052042	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:150052042A>T	uc003lss.2	+	6	1152	c.565A>T	c.(565-567)AAC>TAC	p.N189Y	MYOZ3_uc003lsr.2_Missense_Mutation_p.N189Y	NM_001122853	NP_001116325	Q8TDC0	MYOZ3_HUMAN	myozenin 3	189	Binding to ACTN2.					sarcomere	protein binding			skin(1)	1		Medulloblastoma(196;0.134)|all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCCCAGCCCCAACGACTACCG	0.622													5	35					0	0	1	0	0
TNIP1	10318	broad.mit.edu	37	5	150416401	150416402	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:150416401_150416402GG>AA	uc003ltf.2	-	13	1933_1934	c.1344_1345CC>TT	c.(1342-1347)GCCCTC>GCTTTC	p.L449F	TNIP1_uc011dcn.1_5'Flank|TNIP1_uc010jhl.2_RNA|TNIP1_uc010jhm.2_Missense_Mutation_p.L449F|TNIP1_uc010jhn.2_Missense_Mutation_p.L449F|TNIP1_uc011dco.1_Missense_Mutation_p.L449F|TNIP1_uc003lth.2_RNA|TNIP1_uc003lti.2_Missense_Mutation_p.L449F|TNIP1_uc003ltg.2_Missense_Mutation_p.L396F|TNIP1_uc003ltj.2_Missense_Mutation_p.L449F|TNIP1_uc010jho.1_RNA|TNIP1_uc010jhq.1_Missense_Mutation_p.L396F|TNIP1_uc010jhp.1_Missense_Mutation_p.L396F|TNIP1_uc010jhr.1_Missense_Mutation_p.L449F|TNIP1_uc003ltk.2_Missense_Mutation_p.L449F	NM_006058	NP_006049	Q15025	TNIP1_HUMAN	TNFAIP3 interacting protein 1	449	Potential.				defense response|glycoprotein biosynthetic process|negative regulation of viral genome replication|translation	cytoplasm|nucleus	protein binding			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.0911)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTCCTTAGGAGGGCCCCTGCTC	0.574													11	60					0	0	1	0	0
GM2A	2760	broad.mit.edu	37	5	150646433	150646433	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:150646433C>T	uc003ltr.3	+	3	550	c.385C>T	c.(385-387)CTG>TTG	p.L129L	GM2A_uc011dcs.1_RNA|GM2A_uc011dcr.1_Silent_p.L129L|GM2A_uc003ltt.1_Silent_p.L61L|GM2A_uc003ltu.1_5'Flank	NM_000405	NP_000396	P17900	SAP3_HUMAN	GM2 ganglioside activator precursor	129						lysosome|nucleolus	sphingolipid activator protein activity				0		Medulloblastoma(196;0.091)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCCAGAGCCCCTGCGTACCTA	0.512													17	63					0	0	1	0	0
SLC36A2	153201	broad.mit.edu	37	5	150712866	150712866	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:150712866G>A	uc003lty.2	-	7	892	c.762C>T	c.(760-762)AGC>AGT	p.S254S	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_RNA|SLC36A2_uc003lua.2_Silent_p.S56S|SLC36A2_uc010jhv.2_Silent_p.S254S	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	254	Extracellular (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTGGCAACCGGCTGGGGTCTG	0.438													9	32					0	0	1	0	0
FAT2	2196	broad.mit.edu	37	5	150921921	150921921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:150921921C>T	uc003lue.3	-	9	8780	c.8767G>A	c.(8767-8769)GAA>AAA	p.E2923K	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2923	Extracellular (Potential).|Cadherin 26.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCCACCAGTTCGCCAGGCTCA	0.512													16	85					0	0	1	0	0
GLRA1	2741	broad.mit.edu	37	5	151235888	151235888	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:151235888T>C	uc003lut.2	-	5	820	c.533A>G	c.(532-534)CAG>CGG	p.Q178R	GLRA1_uc003lur.2_Missense_Mutation_p.Q178R|GLRA1_uc003lus.2_Missense_Mutation_p.Q95R	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	178	Extracellular (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GATACATGTCTGGACATCCAT	0.478													6	42					0	0	1	0	0
GLRA1	2741	broad.mit.edu	37	5	151239535	151239535	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:151239535C>T	uc003lut.2	-	4	574	c.287G>A	c.(286-288)TGG>TAG	p.W96*	GLRA1_uc003lur.2_Nonsense_Mutation_p.W96*|GLRA1_uc003lus.2_Nonsense_Mutation_p.W13*	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	96	Extracellular (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGGGTCGTTCCATTGCTGCCG	0.522													5	34					0	0	1	0	0
NMUR2	56923	broad.mit.edu	37	5	151784098	151784098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:151784098G>A	uc003luv.2	-	1	743	c.577C>T	c.(577-579)CCC>TCC	p.P193S		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	193	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			GACCCATTGGGGAAGTAGTGG	0.582													10	87					0	0	1	0	0
LARP1	23367	broad.mit.edu	37	5	154179196	154179196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:154179196C>T	uc003lvp.2	+	9	1852	c.1423C>T	c.(1423-1425)CGT>TGT	p.R475C	LARP1_uc003lvo.2_Missense_Mutation_p.R398C|LARP1_uc010jie.1_Missense_Mutation_p.R270C	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	475	HTH La-type RNA-binding.						protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TGAGAAAGTTCGTAGGAGGGA	0.483													21	71					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154394782	154394782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:154394782G>A	uc010jih.1	+	1	1523	c.1363G>A	c.(1363-1365)GAA>AAA	p.E455K		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	455	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GGAGACTTTGGAAGACCAGGA	0.443													9	57					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154395958	154395958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:154395958G>A	uc010jih.1	+	1	2699	c.2539G>A	c.(2539-2541)GAA>AAA	p.E847K		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	847	Interaction with PRC1 (By similarity).|Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TGCAGAAAGTGAAGATAGGCC	0.438													5	30					0	0	1	0	0
FAM71B	153745	broad.mit.edu	37	5	156590418	156590418	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:156590418C>T	uc003lwn.2	-	2	958	c.858G>A	c.(856-858)GGG>GGA	p.G286G		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	286	Ala-rich.					nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCATTGCTGCCCCTGCTATTG	0.567													12	167					0	0	1	0	0
FAM71B	153745	broad.mit.edu	37	5	156590535	156590535	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:156590535C>T	uc003lwn.2	-	2	841	c.741G>A	c.(739-741)GCG>GCA	p.A247A		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	247	Ala-rich.					nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATGGAGAAGCCGCACTAGCCG	0.582													5	88					0	0	1	0	0
ITK	3702	broad.mit.edu	37	5	156644904	156644904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:156644904C>T	uc003lwo.1	+	5	564	c.482C>T	c.(481-483)CCT>CTT	p.P161L		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	161					cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CCTCCTACTCCTGAAGACAAC	0.507			T	SYK	peripheral T-cell lymphoma								30	172					0	0	1	0	0
ITK	3702	broad.mit.edu	37	5	156679616	156679616	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:156679616G>A	uc003lwo.1	+	17	1874	c.1792_splice	c.e17-1	p.R598_splice		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase						cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCCCTCTCCAGAGACCAGAAG	0.463			T	SYK	peripheral T-cell lymphoma								20	155					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156729833	156729833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:156729833C>T	uc003lwq.2	+	9	739	c.601C>T	c.(601-603)CCC>TCC	p.P201S	CYFIP2_uc011ddn.1_Missense_Mutation_p.P175S|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Missense_Mutation_p.P201S|CYFIP2_uc003lws.2_Missense_Mutation_p.P201S|CYFIP2_uc003lwt.2_Missense_Mutation_p.P79S|CYFIP2_uc011ddp.1_Intron|CYFIP2_uc003lwp.2_Missense_Mutation_p.P79S	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	201					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GATGGCAGATCCCCAGTCTAT	0.572													17	158					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156752575	156752575	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:156752575C>T	uc003lwq.2	+	19	2049	c.1911C>T	c.(1909-1911)TTC>TTT	p.F637F	CYFIP2_uc011ddn.1_Silent_p.F611F|CYFIP2_uc011ddo.1_Silent_p.F441F|CYFIP2_uc003lwr.2_Silent_p.F637F|CYFIP2_uc003lws.2_Silent_p.F637F|CYFIP2_uc003lwt.2_Silent_p.F540F|CYFIP2_uc011ddp.1_Silent_p.F371F	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	662					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GAATCCAGTTCCCCATCGAGA	0.527													39	195					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156757823	156757823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:156757823C>T	uc003lwq.2	+	22	2368	c.2230C>T	c.(2230-2232)CGC>TGC	p.R744C	CYFIP2_uc011ddn.1_Missense_Mutation_p.R718C|CYFIP2_uc011ddo.1_Missense_Mutation_p.R548C|CYFIP2_uc003lwr.2_Missense_Mutation_p.R744C|CYFIP2_uc003lws.2_Missense_Mutation_p.R744C|CYFIP2_uc003lwt.2_Missense_Mutation_p.R647C|CYFIP2_uc011ddp.1_Missense_Mutation_p.R478C	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	769					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ACCGTCCAATCGCTATGAAAC	0.493													26	152					0	0	1	0	0
ADAM19	8728	broad.mit.edu	37	5	156924097	156924097	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:156924097G>A	uc003lwz.2	-	14	1463	c.1399C>T	c.(1399-1401)CTG>TTG	p.L467L	ADAM19_uc003lww.1_Silent_p.L200L|ADAM19_uc003lwy.2_Silent_p.L66L|ADAM19_uc011ddr.1_Silent_p.L398L	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	467	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGAGCCAACAGCTGAGCCAAG	0.557													4	18					0	0	1	0	0
SOX30	11063	broad.mit.edu	37	5	157053512	157053512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:157053512G>A	uc003lxb.1	-	5	2440	c.2098C>T	c.(2098-2100)CAT>TAT	p.H700Y	SOX30_uc003lxc.1_3'UTR|SOX30_uc011dds.1_Missense_Mutation_p.H395Y	NM_178424	NP_848511	O94993	SOX30_HUMAN	SRY (sex determining region Y)-box 30 isoform a	700					regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|response to corticosteroid stimulus|transcription, DNA-dependent	nucleus|nucleus	sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)|central_nervous_system(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CTGTGGCTATGACTGTTATAG	0.423													4	21					0	0	1	0	0
CCNJL	79616	broad.mit.edu	37	5	159680456	159680456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:159680456G>A	uc003lyb.1	-	7	1489	c.1237C>T	c.(1237-1239)CTC>TTC	p.L413F	CCNJL_uc011dee.1_Missense_Mutation_p.L365F|CCNJL_uc003lyc.1_RNA	NM_024565	NP_078841	Q8IV13	CCNJL_HUMAN	cyclin J-like	413						nucleus					0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTGGTGGCGAGGCAGTGCCTG	0.602													9	49					0	0	1	0	0
GABRA6	2559	broad.mit.edu	37	5	161116303	161116303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:161116303C>T	uc003lyu.2	+	5	828	c.490C>T	c.(490-492)CCT>TCT	p.P164S	GABRA6_uc003lyv.2_5'Flank	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	164	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GGTTAACTTTCCTATGGATGG	0.388										TCGA Ovarian(5;0.080)			6	56					0	0	1	0	0
GABRA6	2559	broad.mit.edu	37	5	161116309	161116309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:161116309G>A	uc003lyu.2	+	5	834	c.496G>A	c.(496-498)GAT>AAT	p.D166N	GABRA6_uc003lyv.2_5'Flank	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	166	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CTTTCCTATGGATGGGCATGC	0.378										TCGA Ovarian(5;0.080)			5	57					0	0	1	0	0
GABRA6	2559	broad.mit.edu	37	5	161118948	161118948	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:161118948G>A	uc003lyu.2	+	8	1166	c.828G>A	c.(826-828)GGG>GGA	p.G276G	GABRA6_uc003lyv.2_Silent_p.G47G	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	276	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTATTTTAGGGATCACCACTG	0.388										TCGA Ovarian(5;0.080)			4	52					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167617384	167617384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:167617384C>T	uc010jjd.2	+	14	2585	c.2585C>T	c.(2584-2586)TCA>TTA	p.S862L	ODZ2_uc003lzr.3_Missense_Mutation_p.S639L|ODZ2_uc003lzt.3_Missense_Mutation_p.S235L|ODZ2_uc010jje.2_Missense_Mutation_p.S133L|uc003lzs.1_5'Flank	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TGCCTGCAGTCAGCCTGTCAG	0.582													4	15					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167645246	167645246	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:167645246G>A	uc010jjd.2	+	23	4323	c.4323G>A	c.(4321-4323)GCG>GCA	p.A1441A	ODZ2_uc003lzr.3_Silent_p.A1211A|ODZ2_uc003lzt.3_Silent_p.A814A|ODZ2_uc010jje.2_Silent_p.A705A	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GCATCATTGCGGGACGCCCCA	0.502													15	118					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167675130	167675130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:167675130G>A	uc010jjd.2	+	27	7159	c.7159G>A	c.(7159-7161)GAG>AAG	p.E2387K	ODZ2_uc003lzr.3_Missense_Mutation_p.E2157K|ODZ2_uc003lzt.3_Missense_Mutation_p.E1760K|ODZ2_uc010jje.2_Missense_Mutation_p.E1651K	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GGCCTATGGGGAGATTTATTA	0.527													9	125					0	0	1	0	0
WWC1	23286	broad.mit.edu	37	5	167882444	167882444	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:167882444C>T	uc003lzu.2	+	19	2835	c.2742C>T	c.(2740-2742)TCC>TCT	p.S914S	WWC1_uc003lzv.2_Silent_p.S914S|WWC1_uc011den.1_Silent_p.S914S|WWC1_uc003lzw.2_Silent_p.S713S|WWC1_uc010jjf.1_Silent_p.S186S	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	914	Interaction with histone H3.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		GCACCCCGTCCCAGGGGCCAT	0.632													10	104					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168112875	168112875	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:168112875G>A	uc003mab.2	-	31	3792	c.3372C>T	c.(3370-3372)GAC>GAT	p.D1124D	SLIT3_uc010jjg.2_Silent_p.D1131D	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1124	EGF-like 6.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACTCGTACTGGTCGCATGGGC	0.642													4	27					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168123337	168123337	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:168123337C>T	uc003mab.2	-	28	3462	c.3042G>A	c.(3040-3042)GGG>GGA	p.G1014G	SLIT3_uc010jjg.2_Silent_p.G1021G	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1014	EGF-like 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGTTGTTGATCCCGTCCACGC	0.532													5	68					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168199905	168199905	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:168199905C>A	uc003mab.2	-	14	1760	c.1340G>T	c.(1339-1341)TGG>TTG	p.W447L	SLIT3_uc010jjg.2_Missense_Mutation_p.W447L|SLIT3_uc010jji.2_Missense_Mutation_p.W447L|SLIT3_uc003mac.1_Missense_Mutation_p.W244L	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	447	LRRCT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTCGGCCAGCCACTTCAAGTG	0.622													6	59					0.0215528	0.0217116	1	1	0
SLIT3	6586	broad.mit.edu	37	5	168310283	168310283	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:168310283C>T	uc003mab.2	-	5	892	c.472G>A	c.(472-474)GAT>AAT	p.D158N	SLIT3_uc010jjg.2_Missense_Mutation_p.D158N|SLIT3_uc010jji.2_Missense_Mutation_p.D158N	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	158	LRR 5.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTCTTCACATCGGTGATGCCG	0.507													4	40					0	0	1	0	0
STK10	6793	broad.mit.edu	37	5	171517270	171517270	+	Missense_Mutation	SNP	C	T	T	rs148957159		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:171517270C>T	uc003mbo.1	-	10	1951	c.1651G>A	c.(1651-1653)GAT>AAT	p.D551N		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	551							ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TTCTTCTCATCTTCGCTGATG	0.522													18	131					0	0	1	0	0
STK10	6793	broad.mit.edu	37	5	171523556	171523556	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:171523556G>A	uc003mbo.1	-	8	1179	c.879C>T	c.(877-879)TTC>TTT	p.F293F		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	293	Protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TGCTGCTGACGAAGGGATGCT	0.627													10	73					0	0	1	0	0
RPL26L1	51121	broad.mit.edu	37	5	172395530	172395530	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:172395530C>T	uc003mcc.2	+	3	279	c.237C>T	c.(235-237)GTC>GTT	p.V79V		NM_016093	NP_057177	Q9UNX3	RL26L_HUMAN	ribosomal protein L26-like 1	79					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|large ribosomal subunit	structural constituent of ribosome				0	Renal(175;0.000159)|Lung NSC(126;0.00344)|all_lung(126;0.00594)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AGAAATATGTCATCTACATCG	0.498													9	101					0	0	1	0	0
CPLX2	10814	broad.mit.edu	37	5	175306869	175306869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:175306869G>A	uc003mde.1	+	5	572	c.226G>A	c.(226-228)GAG>AAG	p.E76K	CPLX2_uc003mdf.1_Missense_Mutation_p.E76K	NM_006650	NP_006641	Q6PUV4	CPLX2_HUMAN	complexin 2	76	Potential.|Interaction with the SNARE complex (By similarity).				mast cell degranulation|positive regulation of synaptic plasticity|vesicle docking involved in exocytosis	cytosol				ovary(1)	1	all_cancers(89;0.004)|Renal(175;0.000269)|Lung NSC(126;0.00441)|all_lung(126;0.00747)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			GAAGAAGAAGGAGGAGAAGGA	0.647													5	16					0	0	1	0	0
HK3	3101	broad.mit.edu	37	5	176314231	176314231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:176314231C>T	uc003mfa.2	-	12	1800	c.1708G>A	c.(1708-1710)GAG>AAG	p.E570K	HK3_uc003mez.2_Missense_Mutation_p.E126K	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	570	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCCACAGTCTCGGGAATGGAG	0.617													5	39					0	0	1	0	0
HK3	3101	broad.mit.edu	37	5	176316540	176316540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:176316540C>T	uc003mfa.2	-	8	848	c.756G>A	c.(754-756)ATG>ATA	p.M252I	HK3_uc003mez.2_5'UTR	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	252	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GTGCCTCCTCCATGTAACACG	0.637													4	25					0	0	1	0	0
SLC34A1	6569	broad.mit.edu	37	5	176823738	176823738	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:176823738C>T	uc003mgk.3	+	11	1280	c.1179C>T	c.(1177-1179)TTC>TTT	p.F393F		NM_003052	NP_003043	Q06495	NPT2A_HUMAN	solute carrier family 34 (sodium phosphate),	393	Cytoplasmic (Potential).				phosphate ion homeostasis|response to cadmium ion|response to lead ion|response to mercury ion|sodium ion transport	brush border membrane|integral to plasma membrane	protein binding|sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TTGCAGACTTCCCTGCCCCCT	0.647													7	52					0	0	1	0	0
FAM193B	54540	broad.mit.edu	37	5	176966008	176966008	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:176966008G>A	uc003mhs.3	-	3	1601	c.12C>T	c.(10-12)CTC>CTT	p.L4L	FAM193B_uc003mht.2_5'Flank|FAM193B_uc003mhu.2_5'Flank|FAM193B_uc003mhv.2_5'UTR|FAM193B_uc003mhw.2_RNA	NM_019057	NP_061930	E9PET5	E9PET5_HUMAN	hypothetical protein LOC54540	117											0						GATTCTTGACGAGCTTTGGCA	0.552													6	75					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178541002	178541002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:178541002G>A	uc003mjw.2	-	22	3502	c.3502C>T	c.(3502-3504)CAT>TAT	p.H1168Y	uc003mjv.3_5'Flank	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1168					collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		TCCAGGCCATGGATTTTGTAG	0.522													18	88					0	0	1	0	0
RASGEF1C	255426	broad.mit.edu	37	5	179545696	179545696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:179545696C>T	uc003mlq.2	-	9	1293	c.996G>A	c.(994-996)ATG>ATA	p.M332I	RASGEF1C_uc003mlr.2_Missense_Mutation_p.M332I|RASGEF1C_uc003mlp.3_Missense_Mutation_p.M181I	NM_175062	NP_778232	Q8N431	RGF1C_HUMAN	RasGEF domain family, member 1C	332	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(89;3.44e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0242)|Medulloblastoma(196;0.00498)|all_neural(177;0.0137)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCGTTGGGTCCATCTGGTGCT	0.662													10	90					0	0	1	0	0
GFPT2	9945	broad.mit.edu	37	5	179745923	179745923	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:179745923G>A	uc003mlw.1	-	10	926	c.828C>T	c.(826-828)TTC>TTT	p.F276F		NM_005110	NP_005101	O94808	GFPT2_HUMAN	glutamine-fructose-6-phosphate transaminase 2	276	Glutamine amidotransferase type-2.				dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			ovary(1)|skin(1)	2	all_cancers(89;4.97e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	Medulloblastoma(196;0.0392)|all_neural(177;0.0529)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		L-Glutamine(DB00130)	CGTCCTCCAGGAAGATGACCC	0.597													7	35					0	0	1	0	0
FLT4	2324	broad.mit.edu	37	5	180056392	180056392	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr5:180056392G>A	uc003mma.3	-	7	931	c.852C>T	c.(850-852)TCC>TCT	p.S284S	FLT4_uc003mlz.3_Silent_p.S284S|FLT4_uc003mmb.1_5'UTR|FLT4_uc011dgy.1_Silent_p.S284S|FLT4_uc011dgz.1_Intron	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	284	Ig-like C2-type 3.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GGGTCTGCTGGGAGCGTCGCT	0.662									Congenital_Hereditary_Lymphedema				4	66					0	0	1	0	0
C6orf195	154386	broad.mit.edu	37	6	2623830	2623830	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:2623830G>A	uc003mtw.2	-	3	1212	c.227C>T	c.(226-228)TCT>TTT	p.S76F		NM_152554	NP_689767	Q96MT4	CF195_HUMAN	hypothetical protein LOC154386	76											0	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				GCAGTGGGGAGATGGGGCAGG	0.617													6	85					0	0	1	0	0
MYLK4	340156	broad.mit.edu	37	6	2689108	2689108	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:2689108C>A	uc003mty.3	-	4	615	c.318G>T	c.(316-318)GTG>GTT	p.V106V		NM_001012418	NP_001012418	Q86YV6	MYLK4_HUMAN	myosin light chain kinase family, member 4	106	Protein kinase.						ATP binding|protein serine/threonine kinase activity			breast(3)|ovary(1)	4	Ovarian(93;0.0412)	all_hematologic(90;0.0897)				CTGTCTTGCTCACAGTATAGA	0.468													6	229					1	1	1	1	0
C6orf145	221749	broad.mit.edu	37	6	3737388	3737388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:3737388G>A	uc003mvt.2	-	3	872	c.391C>T	c.(391-393)CCT>TCT	p.P131S		NM_183373	NP_899229	Q5TGL8	CF145_HUMAN	hypothetical protein LOC221749	131	PX.				cell communication		phosphatidylinositol binding			breast(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				TGATCCAGAGGAGATCTTTCG	0.433													8	88					0	0	1	0	0
PRPF4B	8899	broad.mit.edu	37	6	4032372	4032372	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:4032372C>T	uc003mvv.2	+	2	712	c.621C>T	c.(619-621)ATC>ATT	p.I207I	PRPF4B_uc011dhv.1_RNA	NM_003913	NP_003904	Q13523	PRP4B_HUMAN	serine/threonine-protein kinase PRP4K	207	Arg/Lys-rich (basic).					catalytic step 2 spliceosome	ATP binding|protein binding|protein serine/threonine kinase activity			breast(5)	5	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				GTATTGAAATCGTTAAAGAGA	0.348													10	85					0	0	1	0	0
C6orf146	222826	broad.mit.edu	37	6	4069751	4069751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:4069751C>T	uc003mvx.2	-	7	1046	c.706G>A	c.(706-708)GAA>AAA	p.E236K	C6orf146_uc010jnq.1_Intron|C6orf146_uc003mvy.2_Missense_Mutation_p.E173K	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	236										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				GTGAAAGGTTCCTCAACATTT	0.378													13	67					0	0	1	0	0
NRN1	51299	broad.mit.edu	37	6	6002701	6002701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:6002701C>T	uc003mwu.2	-	2	736	c.85G>A	c.(85-87)GGC>AGC	p.G29S	NRN1_uc003mwt.2_Missense_Mutation_p.G55S	NM_016588	NP_057672	Q9NPD7	NRN1_HUMAN	neuritin precursor	29						anchored to membrane|plasma membrane					0	Ovarian(93;0.0816)	all_hematologic(90;0.151)		OV - Ovarian serous cystadenocarcinoma(45;0.00415)		TCGCACTTGCCCGCTGCTCTC	0.647													5	41					0	0	1	0	0
F13A1	2162	broad.mit.edu	37	6	6145998	6145998	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:6145998G>A	uc003mwv.2	-	15	2176	c.2053C>T	c.(2053-2055)CGG>TGG	p.R685W	F13A1_uc011dib.1_Intron	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	685					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	GAGTTGGGCCGGATTTCACTG	0.517													4	20					0	0	1	0	0
F13A1	2162	broad.mit.edu	37	6	6318824	6318824	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:6318824T>G	uc003mwv.2	-	2	197	c.74A>C	c.(73-75)GAT>GCT	p.D25A	F13A1_uc011dib.1_Missense_Mutation_p.D25A	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	25					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	GGGCAGGTCATCTTCCGCTGC	0.552													6	116					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7580448	7580448	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:7580448G>A	uc003mxp.1	+	23	4304	c.4025G>A	c.(4024-4026)TGG>TAG	p.W1342*	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1342	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AAGCGCCGCTGGGAATATGAA	0.448													5	48					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7581439	7581439	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:7581439G>A	uc003mxp.1	+	23	5295	c.5016G>A	c.(5014-5016)CAG>CAA	p.Q1672Q	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1672	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TCCAGGAACAGGAAAGTGTCA	0.493													4	85					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7581560	7581560	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:7581560C>T	uc003mxp.1	+	23	5416	c.5137C>T	c.(5137-5139)CTG>TTG	p.L1713L	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1713	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CACAGAGAACCTGACCAAGGA	0.453													4	43					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7583528	7583528	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:7583528C>T	uc003mxp.1	+	24	6312	c.6033C>T	c.(6031-6033)TTC>TTT	p.F2011F	DSP_uc003mxq.1_Silent_p.F1412F	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2011	Plectin 1.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TCCAGCCATTCCTTCGGGGTG	0.453													5	45					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7583684	7583684	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:7583684G>A	uc003mxp.1	+	24	6468	c.6189G>A	c.(6187-6189)CGG>CGA	p.R2063R	DSP_uc003mxq.1_Silent_p.R1464R	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2063	Plectin 2.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ATCCCCATCGGAATGAGAAGC	0.483													7	81					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7584130	7584130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:7584130G>A	uc003mxp.1	+	24	6914	c.6635G>A	c.(6634-6636)GGA>GAA	p.G2212E	DSP_uc003mxq.1_Missense_Mutation_p.G1613E	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2212	Plectin 6.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TCCTTCCAAGGAATCAGACAA	0.463													10	66					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7585957	7585957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:7585957C>T	uc003mxp.1	+	24	8741	c.8462C>T	c.(8461-8463)TCG>TTG	p.S2821L	DSP_uc003mxq.1_Missense_Mutation_p.S2222L	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2821	Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AACATGTCTTCGGCTCCGGGG	0.438													9	115					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7586077	7586077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:7586077C>T	uc003mxp.1	+	24	8861	c.8582C>T	c.(8581-8583)TCC>TTC	p.S2861F	DSP_uc003mxq.1_Missense_Mutation_p.S2262F	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2861	Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TACTCTTATTCCTACTCATTT	0.313													29	117					0	0	1	0	0
PIP5K1P1	206426	broad.mit.edu	37	6	7987602	7987602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:7987602C>T	uc003mxx.3	+	1	1268	c.833C>T	c.(832-834)CCT>CTT	p.P278L	TXNDC5_uc003mxw.2_Intron	NR_027712				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						CAAGACATCCCTGATGGTCTT	0.468													4	19					0	0	1	0	0
GCM2	9247	broad.mit.edu	37	6	10874606	10874606	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:10874606G>A	uc003mzn.3	-	5	1215	c.1143C>T	c.(1141-1143)ACC>ACT	p.T381T	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	381					cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				TGGTGATCACGGTTTGTAGGG	0.557													8	173					0	0	1	0	0
GCM2	9247	broad.mit.edu	37	6	10875068	10875068	+	Silent	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:10875068A>T	uc003mzn.3	-	5	753	c.681T>A	c.(679-681)ATT>ATA	p.I227I	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	227					cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				GCTGCCCTGGAATAGGGAAGC	0.453													9	49					0	0	1	0	0
SYCP2L	221711	broad.mit.edu	37	6	10927562	10927562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:10927562G>A	uc003mzo.2	+	17	1698	c.1402G>A	c.(1402-1404)GAG>AAG	p.E468K	SYCP2L_uc011din.1_Intron|SYCP2L_uc010jow.2_Missense_Mutation_p.E88K	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	468						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			TGACCAATCTGAGCCACCTGT	0.239													8	25					0	0	1	0	0
SYCP2L	221711	broad.mit.edu	37	6	10928671	10928671	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:10928671C>T	uc003mzo.2	+	18	1772	c.1476C>T	c.(1474-1476)TTC>TTT	p.F492F	SYCP2L_uc011din.1_Intron|SYCP2L_uc010jow.2_Silent_p.F112F	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	492						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			tccctgacttcccgcaacaAC	0.244													5	35					0	0	1	0	0
HIVEP1	3096	broad.mit.edu	37	6	12124321	12124321	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:12124321G>A	uc003nac.2	+	4	4472	c.4293G>A	c.(4291-4293)CGG>CGA	p.R1431R	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	1431					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				CACTGGTACGGCAAATATCTT	0.478													10	34					0	0	1	0	0
HIVEP1	3096	broad.mit.edu	37	6	12131132	12131132	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:12131132C>T	uc003nac.2	+	6	6521	c.6342C>T	c.(6340-6342)CGC>CGT	p.R2114R	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2114					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				CAGATGTCCGCCCCTACCACT	0.403													6	32					0	0	1	0	0
EDN1	1906	broad.mit.edu	37	6	12292676	12292676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:12292676C>T	uc003nae.3	+	2	501	c.167C>T	c.(166-168)TCG>TTG	p.S56L	EDN1_uc010jpb.2_Missense_Mutation_p.S56L|EDN1_uc003nad.2_Missense_Mutation_p.S56L|EDN1_uc003naf.3_Missense_Mutation_p.S55L	NM_001955	NP_001946	P05305	EDN1_HUMAN	endothelin 1 precursor	56					artery smooth muscle contraction|calcium-mediated signaling|leukocyte activation|negative regulation of blood coagulation|negative regulation of cellular protein metabolic process|negative regulation of nitric-oxide synthase biosynthetic process|negative regulation of transcription from RNA polymerase II promoter|nitric oxide transport|peptide hormone secretion|phosphatidylinositol 3-kinase cascade|positive regulation of cardiac muscle hypertrophy|positive regulation of cell size|positive regulation of endothelial cell migration|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of JUN kinase activity|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of sarcomere organization|positive regulation of smooth muscle cell proliferation|prostaglandin biosynthetic process|protein kinase C deactivation|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	cytoplasm|extracellular space	cytokine activity|endothelin A receptor binding|endothelin B receptor binding|hormone activity			skin(1)	1	all_cancers(95;0.241)|Breast(50;0.0266)|Ovarian(93;0.12)	all_hematologic(90;0.117)				TGCTCCTGCTCGTCCCTGATG	0.587													5	86					0	0	1	0	0
CAP2	10486	broad.mit.edu	37	6	17507461	17507461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:17507461G>A	uc003ncb.2	+	5	605	c.362G>A	c.(361-363)AGA>AAA	p.R121K	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Missense_Mutation_p.R95K|CAP2_uc011djb.1_Missense_Mutation_p.R121K|CAP2_uc011djc.1_Intron|CAP2_uc011djd.1_Intron	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	121					activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			CAAACTTTCAGAGAGAGAAAC	0.483													4	38					0	0	1	0	0
TPMT	7172	broad.mit.edu	37	6	18139944	18139944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:18139944G>A	uc003ncm.2	-	5	526	c.371C>T	c.(370-372)TCT>TTT	p.S124F	TPMT_uc010jpm.1_Missense_Mutation_p.S124F	NM_000367	NP_000358	P51580	TPMT_HUMAN	thiopurine S-methyltransferase	124					xenobiotic metabolic process	cytosol	thiopurine S-methyltransferase activity				0	Ovarian(93;0.016)|Breast(50;0.0245)	all_hematologic(90;0.146)	all cancers(50;0.06)|Epithelial(50;0.0654)		Mercaptopurine(DB01033)	GTTCCCCGAAGAACTCTGTAA	0.333													5	18					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24433449	24433449	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:24433449C>T	uc003ned.1	-	24	2513	c.2402G>A	c.(2401-2403)GGG>GAG	p.G801E		NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	801	FG-GAP 7.					extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						GAGGGAGCTCCCAAACCTTGA	0.448													8	85					0	0	1	0	0
ALDH5A1	7915	broad.mit.edu	37	6	24505192	24505192	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:24505192C>T	uc003neg.2	+	4	733	c.705C>T	c.(703-705)TTC>TTT	p.F235F	ALDH5A1_uc003nef.2_Silent_p.F235F	NM_001080	NP_001071	P51649	SSDH_HUMAN	aldehyde dehydrogenase 5A1 isoform 2 precursor	235					acetate metabolic process|central nervous system development|galactosylceramide metabolic process|gamma-aminobutyric acid catabolic process|glucose metabolic process|glutamate metabolic process|glutamine metabolic process|glutathione metabolic process|glycerophospholipid metabolic process|neurotransmitter catabolic process|neurotransmitter secretion|protein homotetramerization|respiratory electron transport chain|short-chain fatty acid metabolic process|succinate metabolic process	mitochondrial matrix|soluble fraction	succinate-semialdehyde dehydrogenase activity				0					Chlormerodrin(DB00534)|NADH(DB00157)|Succinic acid(DB00139)	ACACGCCCTTCTCCGCCCTGG	0.567													5	92					0	0	1	0	0
LRRC16A	55604	broad.mit.edu	37	6	25581586	25581586	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:25581586C>T	uc011djw.1	+	31	3301	c.2925C>T	c.(2923-2925)CCC>CCT	p.P975P	LRRC16A_uc010jpx.2_Silent_p.P975P|LRRC16A_uc010jpy.2_Silent_p.P975P	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A	975	LRR 11.|Inhibits capping activity of CAPZA2 (By similarity).				actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						CTGAGTTGCCCTCTGAAGAGG	0.517													3	19					0	0	1	0	0
LRRC16A	55604	broad.mit.edu	37	6	25619765	25619765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:25619765C>T	uc011djw.1	+	37	4446	c.4070C>T	c.(4069-4071)TCT>TTT	p.S1357F	LRRC16A_uc010jpx.2_Missense_Mutation_p.S1312F|LRRC16A_uc010jpy.2_Missense_Mutation_p.S1351F	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A	1357					actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						GGCAGCAAATCTAATGACTCC	0.473													3	40					0	0	1	0	0
SCGN	10590	broad.mit.edu	37	6	25689716	25689716	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:25689716G>T	uc003nfb.2	+	9	792	c.589G>T	c.(589-591)GAA>TAA	p.E197*	SCGN_uc010jpz.2_Nonsense_Mutation_p.E88*	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	197	EF-hand 5.					extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						TTCTACTGAAGAAAGGAAAAG	0.388													6	53					0.248553	0.249843	1	1	0
SLC17A1	6568	broad.mit.edu	37	6	25813418	25813418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:25813418G>A	uc003nfh.3	-	7	756	c.640C>T	c.(640-642)CTT>TTT	p.L214F	SLC17A1_uc011djy.1_Intron|SLC17A1_uc010jqb.1_Missense_Mutation_p.L212F|SLC17A1_uc010jqc.1_Missense_Mutation_p.L212F	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	214	Helical; (Potential).				sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						AACCAGAGAAGACATACGGCA	0.443													6	31					0	0	1	0	0
SLC17A1	6568	broad.mit.edu	37	6	25826824	25826824	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:25826824G>A	uc003nfh.3	-	3	188	c.72C>T	c.(70-72)TTC>TTT	p.F24F	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Silent_p.F22F|SLC17A1_uc010jqc.1_Silent_p.F22F	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	24					sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						AGTGCACAAGGAAAGACAATC	0.413													6	19					0	0	1	0	0
HFE	3077	broad.mit.edu	37	6	26091134	26091134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:26091134G>A	uc003nfx.1	+	2	302	c.142G>A	c.(142-144)GAA>AAA	p.E48K	HFE_uc003nfy.1_Intron|HFE_uc010jqe.1_Missense_Mutation_p.E48K|HFE_uc003nfz.1_Intron|HFE_uc003ngd.1_Intron|HFE_uc003nga.1_Missense_Mutation_p.E48K|HFE_uc003ngb.1_Missense_Mutation_p.E48K|HFE_uc003ngc.1_Missense_Mutation_p.E48K|HFE_uc003nge.1_Intron|HFE_uc003ngf.1_Intron	NM_000410	NP_000401	Q30201	HFE_HUMAN	hemochromatosis protein isoform 1 precursor	48	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide antigen via MHC class I|cellular iron ion homeostasis|immune response|iron ion transport|protein complex assembly|receptor-mediated endocytosis	apical part of cell|basal part of cell|cytoplasmic vesicle|early endosome|integral to plasma membrane|MHC class I protein complex|perinuclear region of cytoplasm|recycling endosome	protein binding				0						TTCCTTGTTTGAAGCTTTGGG	0.512									Hemochromatosis				5	95					0	0	1	0	0
BTN3A1	11119	broad.mit.edu	37	6	26413817	26413817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:26413817C>T	uc003nhv.2	+	10	1807	c.1439C>T	c.(1438-1440)TCG>TTG	p.S480L	BTN3A1_uc011dkj.1_3'UTR|BTN3A1_uc011dkk.1_Missense_Mutation_p.S428L|BTN3A1_uc010jqj.2_3'UTR	NM_007048	NP_008979	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1 isoform a	480	Cytoplasmic (Potential).|B30.2/SPRY.				lipid metabolic process	integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						GTGGATGGATCGCATATTCAT	0.483													8	80					0	0	1	0	0
BTN1A1	696	broad.mit.edu	37	6	26505314	26505314	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:26505314G>C	uc003nif.3	+	3	609	c.589G>C	c.(589-591)GAA>CAA	p.E197Q		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	197	Extracellular (Potential).|Ig-like V-type 2.					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						TCCTGATGAAGAAGGTTTGTT	0.498													7	60					0	0	1	0	0
HIST1H2AG	8969	broad.mit.edu	37	6	27101100	27101100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:27101100C>T	uc003niw.2	+	1	284	c.250C>T	c.(250-252)CTC>TTC	p.L84F	HIST1H2BJ_uc003niu.1_5'Flank|HIST1H2BJ_uc003niv.2_5'Flank	NM_021064	NP_066408	P0C0S8	H2A1_HUMAN	histone cluster 1, H2ag	84					nucleosome assembly	nucleosome|nucleus	DNA binding|enzyme binding				0						CCCGCGTCATCTCCAACTGGC	0.622													8	85					0	0	1	0	0
PRSS16	10279	broad.mit.edu	37	6	27222527	27222527	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:27222527C>T	uc003nja.2	+	10	1218	c.1206C>T	c.(1204-1206)TCC>TCT	p.S402S	PRSS16_uc011dkt.1_RNA|PRSS16_uc003njb.2_Silent_p.S145S|PRSS16_uc003njd.2_Intron	NM_005865	NP_005856	Q9NQE7	TSSP_HUMAN	protease, serine, 16 precursor	402					protein catabolic process|proteolysis	cytoplasmic membrane-bounded vesicle	serine-type peptidase activity			ovary(2)|central_nervous_system(2)|skin(1)	5						CACTGCCCTCCCAGCTAGACC	0.577													9	74					0	0	1	0	0
PRSS16	10279	broad.mit.edu	37	6	27222596	27222596	+	Silent	SNP	G	A	A	rs141944192		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:27222596G>A	uc003nja.2	+	10	1287	c.1275G>A	c.(1273-1275)ACG>ACA	p.T425T	PRSS16_uc011dkt.1_RNA|PRSS16_uc003njb.2_Silent_p.T168T|PRSS16_uc003njd.2_Intron	NM_005865	NP_005856	Q9NQE7	TSSP_HUMAN	protease, serine, 16 precursor	425					protein catabolic process|proteolysis	cytoplasmic membrane-bounded vesicle	serine-type peptidase activity	p.T425T(1)		ovary(2)|central_nervous_system(2)|skin(1)	5						TGGCTCAGACGAACTCCTACT	0.567													9	77					0	0	1	0	0
FKSG83	83954	broad.mit.edu	37	6	27293292	27293292	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:27293292C>T	uc010jqt.2	+	1	715	c.231C>T	c.(229-231)ATC>ATT	p.I77I	FKSG83_uc010jqs.1_3'UTR	NM_032030	NP_114419	Q3KNW7	Q3KNW7_HUMAN	FKSG83	77						integral to membrane	pheromone receptor activity				0						TTCACAGTATCAGTCTGTCTC	0.398													17	131					0	0	1	0	0
ZNF184	7738	broad.mit.edu	37	6	27435652	27435652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:27435652G>A	uc003njj.2	-	2	866	c.55C>T	c.(55-57)CTC>TTC	p.L19F	ZNF184_uc010jqv.2_Missense_Mutation_p.L19F|ZNF184_uc003nji.2_Missense_Mutation_p.L19F	NM_007149	NP_009080	Q99676	ZN184_HUMAN	zinc finger protein 184	19					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GCTGATGAGAGTAGATTATGT	0.413													12	32					0	0	1	0	0
HIST1H3J	8356	broad.mit.edu	37	6	27858321	27858321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:27858321G>A	uc003nka.2	-	1	250	c.250C>T	c.(250-252)CGT>TGT	p.R84C	HIST1H2BO_uc003nkc.1_5'Flank	NM_003535	NP_003526	P68431	H31_HUMAN	histone cluster 1, H3j	84					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1						CTCTGGAAACGAAGGTCGGTT	0.562													4	64					0	0	1	0	0
OR2B6	26212	broad.mit.edu	37	6	27925719	27925719	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:27925719G>A	uc011dkx.1	+	1	701	c.701G>A	c.(700-702)CGA>CAA	p.R234Q		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GCTGAAGGTCGACAAAAAGCA	0.453													6	31					0	0	1	0	0
NKAPL	222698	broad.mit.edu	37	6	28227232	28227232	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:28227232C>T	uc003nkt.2	+	1	135	c.83C>T	c.(82-84)CCA>CTA	p.P28L	ZKSCAN4_uc011dlb.1_5'Flank	NM_001007531	NP_001007532	Q5M9Q1	NKAPL_HUMAN	NFKB activating protein-like	28										upper_aerodigestive_tract(1)|ovary(1)	2						GGGAGCCCACCATCCCCGCAG	0.662													5	50					0	0	1	0	0
ZNF323	64288	broad.mit.edu	37	6	28294165	28294165	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:28294165G>A	uc003nla.2	-	4	1399	c.999C>T	c.(997-999)CTC>CTT	p.L333L	ZNF323_uc003nld.2_Silent_p.L333L|ZNF323_uc010jra.2_Silent_p.L333L|ZNF323_uc003nlb.2_Silent_p.L174L|ZNF323_uc010jrb.2_Silent_p.L174L|ZNF323_uc003nlc.2_Silent_p.L333L	NM_001135216	NP_001128688	Q96LW9	ZN323_HUMAN	zinc finger protein 323	333	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ATGAGCTGAGGAGGAAAGCCT	0.502													7	126					0	0	1	0	0
OR2H1	26716	broad.mit.edu	37	6	29429567	29429567	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:29429567C>T	uc003nmi.2	+	3	464	c.21C>T	c.(19-21)CCC>CCT	p.P7P	OR2H1_uc003nmj.1_Silent_p.P7P|OR2H1_uc010jri.1_Intron	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAAGCTCCCCCATGGGCTTCC	0.522													7	79					0	0	1	0	0
OR2H2	7932	broad.mit.edu	37	6	29556054	29556054	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:29556054C>T	uc003nmr.1	+	1	372	c.333C>T	c.(331-333)ATC>ATT	p.I111I	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	111	Helical; Name=3; (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGAGTGCATCCTCTTGACAG	0.567													8	100					0	0	1	0	0
OR2H2	7932	broad.mit.edu	37	6	29556420	29556420	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:29556420G>A	uc003nmr.1	+	1	738	c.699G>A	c.(697-699)AGG>AGA	p.R233R	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	233	Cytoplasmic (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGGGCGGAGGAAAGCTTTTG	0.527													7	69					0	0	1	0	0
ZFP57	346171	broad.mit.edu	37	6	29641171	29641171	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:29641171G>A	uc011dlw.1	-	4	868	c.717C>T	c.(715-717)ACC>ACT	p.T239T	ZFP57_uc003nnl.3_Silent_p.T219T	NM_001109809	NP_001103279	Q9NU63	ZFP57_HUMAN	zinc finger protein 57 homolog	155	C2H2-type 3.				DNA methylation involved in embryo development|regulation of gene expression by genetic imprinting|transcription, DNA-dependent		DNA binding|zinc ion binding			ovary(3)|skin(2)	5						CATCACAGTAGGTCTTGTCAC	0.572													6	63					0	0	1	0	0
TRIM31	11074	broad.mit.edu	37	6	30080278	30080278	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:30080278A>T	uc003npg.1	-	2	415	c.305T>A	c.(304-306)TTC>TAC	p.F102Y	TRIM31_uc003npi.3_RNA	NM_007028	NP_008959	Q9BZY9	TRI31_HUMAN	tripartite motif protein 31	102	B box-type.					mitochondrion	ligase activity|zinc ion binding			lung(1)	1						GAAATAGTGGAACATCTCCTG	0.498													8	101					0	0	1	0	0
TRIM10	10107	broad.mit.edu	37	6	30121959	30121959	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:30121959G>A	uc003npo.3	-	7	1309	c.1233C>T	c.(1231-1233)TTC>TTT	p.F411F	TRIM10_uc003npn.2_Intron	NM_006778	NP_006769	Q9UDY6	TRI10_HUMAN	tripartite motif-containing 10 isoform 1	411	B30.2/SPRY.					cytoplasm	zinc ion binding				0						GAGCCGAGACGAAGCCCCAAG	0.672													4	32					0	0	1	0	0
PPP1R10	5514	broad.mit.edu	37	6	30576621	30576621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:30576621G>A	uc003nqn.1	-	5	817	c.265C>T	c.(265-267)CCC>TCC	p.P89S	PPP1R10_uc010jsc.1_5'UTR	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	89	Interaction with TOX4 (By similarity).|TFIIS N-terminal.				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						TGGAGGAGGGGAATGTTGTTG	0.448													5	46					0	0	1	0	0
DHX16	8449	broad.mit.edu	37	6	30624281	30624281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:30624281G>A	uc003nqz.2	-	15	2529	c.2317C>T	c.(2317-2319)CAT>TAT	p.H773Y	DHX16_uc003nqy.2_Missense_Mutation_p.H292Y|DHX16_uc011dmo.1_Missense_Mutation_p.H713Y	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	773					mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						ATTAGGTCATGGATCCCTAGA	0.537													7	52					0	0	1	0	0
MDC1	9656	broad.mit.edu	37	6	30668355	30668355	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:30668355G>A	uc003nrg.3	-	15	6597	c.6157C>T	c.(6157-6159)CTA>TTA	p.L2053L	MDC1_uc003nrf.3_Silent_p.L684L	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	2053	Required for nuclear localization (NLS2).|BRCT 2.				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						CCAACCCGTAGTGGAATGGAG	0.542								Other_conserved_DNA_damage_response_genes					5	86					0	0	1	0	0
DDR1	780	broad.mit.edu	37	6	30860213	30860213	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:30860213C>T	uc003nrr.2	+	9	1252	c.993C>T	c.(991-993)GCC>GCT	p.A331A	DDR1_uc010jse.2_Silent_p.A331A|DDR1_uc003nrq.2_Silent_p.A331A|DDR1_uc003nrs.2_Silent_p.A331A|DDR1_uc003nrt.2_Silent_p.A331A|DDR1_uc011dms.1_Silent_p.A349A|DDR1_uc003nru.2_Silent_p.A331A|DDR1_uc003nrv.2_Silent_p.A331A|DDR1_uc003nrw.1_Silent_p.A130A|DDR1_uc003nry.1_5'Flank|DDR1_uc003nrx.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	331	Extracellular (Potential).				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	ACCCCAGAGCCCGGGCTGTCT	0.672													8	41					0	0	1	0	0
GTF2H4	2968	broad.mit.edu	37	6	30879800	30879800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:30879800C>T	uc003nsa.1	+	10	1042	c.835C>T	c.(835-837)CGG>TGG	p.R279W	GTF2H4_uc010jsf.2_3'UTR|GTF2H4_uc011dmv.1_3'UTR|GTF2H4_uc003nsb.1_Missense_Mutation_p.R117W|GTF2H4_uc011dmw.1_Missense_Mutation_p.R285W|VARS2_uc003nsc.1_5'Flank|VARS2_uc003nsd.2_5'Flank|VARS2_uc011dmx.1_5'Flank|VARS2_uc011dmy.1_5'Flank|VARS2_uc011dmz.1_5'Flank|VARS2_uc011dna.1_5'Flank|VARS2_uc011dnb.1_5'Flank|VARS2_uc011dnc.1_5'Flank	NM_001517	NP_001508	Q92759	TF2H4_HUMAN	general transcription factor IIH, polypeptide 4,	279					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3						GAGGAAATCTCGGCGTTACTA	0.502								NER					5	58					0	0	1	0	0
VARS2	57176	broad.mit.edu	37	6	30886664	30886664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:30886664C>T	uc003nsc.1	+	10	1678	c.1046C>T	c.(1045-1047)GCC>GTC	p.A349V	VARS2_uc011dmx.1_Missense_Mutation_p.A349V|VARS2_uc011dmy.1_Missense_Mutation_p.A209V|VARS2_uc011dmz.1_Missense_Mutation_p.A379V|VARS2_uc011dna.1_Missense_Mutation_p.A349V|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_5'UTR|VARS2_uc010jsg.1_5'Flank	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	349					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						GTGGCTGTGGCCGTTCATCCA	0.527													6	48					0	0	1	0	0
MUC21	394263	broad.mit.edu	37	6	30954770	30954770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:30954770C>T	uc003nsh.2	+	2	1069	c.818C>T	c.(817-819)TCT>TTT	p.S273F	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	273	Ser-rich.|17.|28 X 15 AA approximate tandem repeats.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						GCCACCAACTCTGAGTCCAGC	0.617													19	143					0	0	1	0	0
MUC21	394263	broad.mit.edu	37	6	30954855	30954855	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:30954855C>T	uc003nsh.2	+	2	1154	c.903C>T	c.(901-903)ACC>ACT	p.T301T	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	301	Ser-rich.|28 X 15 AA approximate tandem repeats.|19.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						ACACAGCCACCAACTCTGAGT	0.592													11	134					0	0	1	0	0
MUC21	394263	broad.mit.edu	37	6	30955002	30955002	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:30955002C>T	uc003nsh.2	+	2	1301	c.1050C>T	c.(1048-1050)TCC>TCT	p.S350S	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	350	Ser-rich.|28 X 15 AA approximate tandem repeats.|22.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						ACTCTGAGTCCAGCACAACCT	0.622													7	153					0	0	1	0	0
CDSN	1041	broad.mit.edu	37	6	31084560	31084560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31084560G>A	uc003nsm.1	-	2	859	c.832C>T	c.(832-834)CTT>TTT	p.L278F	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	278	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						TTGCCTGGAAGGCCACCATTG	0.597													5	49					0	0	1	0	0
CCHCR1	54535	broad.mit.edu	37	6	31122338	31122338	+	Silent	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31122338G>T	uc003nsr.3	-	4	592	c.469C>A	c.(469-471)CGG>AGG	p.R157R	CCHCR1_uc011dne.1_Silent_p.R157R|CCHCR1_uc003nsq.3_Silent_p.R210R|CCHCR1_uc003nsp.3_Silent_p.R246R|CCHCR1_uc010jsk.1_Silent_p.R157R	NM_019052	NP_061925	Q8TD31	CCHCR_HUMAN	coiled-coil alpha-helical rod protein 1 isoform	157	Potential.				cell differentiation|multicellular organismal development	cytoplasm|nucleus	protein binding			skin(1)	1						AAGTTCTTCCGGACAACCTCA	0.612													27	362					1.2476e-16	1.26668e-16	1	1	0
NFKBIL1	4795	broad.mit.edu	37	6	31525483	31525483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31525483C>T	uc003nub.2	+	3	532	c.413C>T	c.(412-414)CCT>CTT	p.P138L	NFKBIL1_uc011dnr.1_Missense_Mutation_p.P115L|NFKBIL1_uc011dns.1_Missense_Mutation_p.P115L|NFKBIL1_uc011dnt.1_RNA|NFKBIL1_uc003nuc.2_Missense_Mutation_p.P138L	NM_005007	NP_004998	Q9UBC1	IKBL1_HUMAN	nuclear factor of kappa light polypeptide gene	138					cytoplasmic sequestering of transcription factor		protein binding				0						GGGGAGACCCCTGGCCAAATT	0.577													5	39					0	0	1	0	0
BAT2	7916	broad.mit.edu	37	6	31600050	31600050	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31600050C>T	uc003nvb.3	+	16	3849	c.3600C>T	c.(3598-3600)GGC>GGT	p.G1200G	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Silent_p.G1200G	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1200	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						CTCCCACAGGCCCTTTGCCAC	0.627													5	23					0	0	1	0	0
BAT5	7920	broad.mit.edu	37	6	31656823	31656824	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31656823_31656824GG>AA	uc003nvy.1	-	13	1184_1185	c.1154_1155CC>TT	c.(1153-1155)CCC>CTT	p.P385L	BAT5_uc003nvx.1_Missense_Mutation_p.P166L|BAT5_uc011dny.1_Missense_Mutation_p.P352L|BAT5_uc003nvz.1_Missense_Mutation_p.P166L|BAT5_uc011dnz.1_Missense_Mutation_p.P166L	NM_021160	NP_066983	O95870	ABHGA_HUMAN	HLA-B associated transcript 5	385						integral to membrane	hydrolase activity|protein binding				0						TCAAGGCCAAGGGCACCAGGTC	0.584													11	193					0	0	1	0	0
LY6G6F	259215	broad.mit.edu	37	6	31675320	31675320	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31675320C>T	uc003nwa.1	+	2	138	c.138C>T	c.(136-138)CAC>CAT	p.H46H	BAT5_uc011dnz.1_Intron|LY6G6F_uc003nwb.1_Silent_p.H46H	NM_001003693	NP_001003693	Q5SQ64	LY66F_HUMAN	G6f protein precursor	46	Extracellular (Potential).|Ig-like V-type.					integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)	2						GGGACGAACACCTGTCATGGT	0.602													52	310					0	0	1	0	0
C6orf25	80739	broad.mit.edu	37	6	31691628	31691628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31691628C>T	uc011doc.1	+	2	274	c.274C>T	c.(274-276)CGG>TGG	p.R92W	LY6G6C_uc003nwh.2_5'Flank|LY6G6C_uc010jtd.2_5'Flank|C6orf25_uc003nwk.2_Missense_Mutation_p.R92W|C6orf25_uc011dod.1_Missense_Mutation_p.R92W|C6orf25_uc011doe.1_Missense_Mutation_p.R92W|C6orf25_uc003nwo.2_Missense_Mutation_p.R92W|C6orf25_uc003nwn.2_Missense_Mutation_p.R92W	NM_138272	NP_612116	O95866	G6B_HUMAN	G6B protein isoform G6b-B precursor	92	Extracellular (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	heparin binding|receptor activity				0						CTCTGGTATCCGGCGGCTGGA	0.677													55	317					0	0	1	0	0
DDAH2	23564	broad.mit.edu	37	6	31696889	31696889	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31696889C>A	uc003nwp.2	-	1	681	c.50G>T	c.(49-51)CGG>CTG	p.R17L	DDAH2_uc003nwq.2_Missense_Mutation_p.R17L	NM_013974	NP_039268	O95865	DDAH2_HUMAN	dimethylarginine dimethylaminohydrolase 2	17					anti-apoptosis|arginine catabolic process|citrulline metabolic process|nitric oxide biosynthetic process|nitric oxide mediated signal transduction	cytoplasm	dimethylargininase activity|protein binding				0					L-Citrulline(DB00155)	TGGGACTCCCCGGATCAGGGC	0.667													5	280					1	1	1	1	0
C6orf27	80737	broad.mit.edu	37	6	31733779	31733779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31733779C>T	uc011dog.1	-	16	2618	c.2380G>A	c.(2380-2382)GAT>AAT	p.D794N		NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	794						extracellular region				ovary(3)	3						GCCGCTGAATCTGGGACCTCC	0.627													24	299					0	0	1	0	0
C6orf27	80737	broad.mit.edu	37	6	31736868	31736868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31736868C>T	uc011dog.1	-	10	1668	c.1430G>A	c.(1429-1431)GGA>GAA	p.G477E	C6orf27_uc003nxd.2_Missense_Mutation_p.G152E|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	477						extracellular region				ovary(3)	3						GATCACCTCTCCTCCTGAGGC	0.572													16	251					0	0	1	0	0
C6orf27	80737	broad.mit.edu	37	6	31740776	31740776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31740776G>A	uc011dog.1	-	7	1280	c.1042C>T	c.(1042-1044)CCC>TCC	p.P348S	C6orf27_uc003nxd.2_Missense_Mutation_p.P23S|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	348						extracellular region				ovary(3)	3						GGCTCCATGGGGCTGCCTCTC	0.567													39	235					0	0	1	0	0
VARS	7407	broad.mit.edu	37	6	31746806	31746806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31746806G>A	uc003nxe.2	-	29	4087	c.3664C>T	c.(3664-3666)CGT>TGT	p.R1222C	C6orf27_uc011dog.1_5'Flank|C6orf27_uc003nxd.2_5'Flank|C6orf27_uc011doh.1_5'Flank|VARS_uc003nxf.1_Missense_Mutation_p.R159C	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	1222					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	GAGGCAGCACGGCGTTCCCGC	0.662													32	194					0	0	1	0	0
VARS	7407	broad.mit.edu	37	6	31752246	31752246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31752246G>A	uc003nxe.2	-	12	1924	c.1501C>T	c.(1501-1503)CTC>TTC	p.L501F	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	501					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	GGCACGGAGAGCAGGGTGCGA	0.597													79	556					0	0	1	0	0
VARS	7407	broad.mit.edu	37	6	31760544	31760544	+	Silent	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31760544A>G	uc003nxe.2	-	4	1074	c.651T>C	c.(649-651)TCT>TCC	p.S217S	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	217	GST C-terminal.				translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	CTGGCTGATGAGAGAGAGGCC	0.532													11	108					0	0	1	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778920	31778920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31778920G>A	uc003nxh.2	-	2	1013	c.830C>T	c.(829-831)TCG>TTG	p.S277L	HSPA1L_uc010jte.2_Missense_Mutation_p.S277L	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	277					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GGTGCTGGACGACAGGGTCCT	0.527													80	401					0	0	1	0	0
NEU1	4758	broad.mit.edu	37	6	31829215	31829215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31829215G>A	uc003nxq.3	-	3	521	c.365C>T	c.(364-366)TCT>TTT	p.S122F	NEU1_uc010jtg.2_RNA|NEU1_uc003nxr.3_RNA|NEU1_uc010jth.2_5'UTR|NEU1_uc003nxs.3_Missense_Mutation_p.S122F	NM_000434	NP_000425	Q99519	NEUR1_HUMAN	neuraminidase precursor	122	BNR 1.					cytoplasmic membrane-bounded vesicle|lysosomal lumen|lysosomal membrane|plasma membrane	exo-alpha-sialidase activity|protein binding			ovary(1)	1					Oseltamivir(DB00198)|Zanamivir(DB00558)	CGCTGTAGGAGACCATGTGCT	0.488													18	209					0	0	1	0	0
SLC44A4	80736	broad.mit.edu	37	6	31839332	31839332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31839332C>T	uc010jti.2	-	8	602	c.536G>A	c.(535-537)GGG>GAG	p.G179E	SLC44A4_uc011dol.1_Missense_Mutation_p.G103E|SLC44A4_uc011dom.1_Missense_Mutation_p.G137E	NM_025257	NP_079533	Q53GD3	CTL4_HUMAN	choline transporter-like protein 4	179	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4					Choline(DB00122)	AAAGCAGCGCCCCAGAGCTGG	0.662													16	109					0	0	1	0	0
C2	717	broad.mit.edu	37	6	31896664	31896664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31896664G>A	uc003nyf.2	+	3	676	c.412G>A	c.(412-414)GAT>AAT	p.D138N	C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_Intron|C2_uc003nye.3_Missense_Mutation_p.D138N|C2_uc010jtk.2_Intron|C2_uc011doq.1_Missense_Mutation_p.D109N|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Intron	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	138	Sushi 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		CGGCATGTGGGATGGAGAAAC	0.607													32	239					0	0	1	0	0
C2	717	broad.mit.edu	37	6	31901481	31901481	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31901481G>A	uc003nyf.2	+	4	801	c.537G>A	c.(535-537)TCG>TCA	p.S179S	C2_uc003nyc.2_Missense_Mutation_p.R11Q|C2_uc011doo.1_Missense_Mutation_p.R11Q|C2_uc011dop.1_Silent_p.S56S|C2_uc003nye.3_Silent_p.S179S|C2_uc010jtk.2_Silent_p.S47S|C2_uc011doq.1_Silent_p.S150S|C2_uc003nyg.2_Silent_p.S47S|CFB_uc011dor.1_Silent_p.S117S	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	179	Sushi 3.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		GCTGCTCCTCGAATCTTGTGC	0.652													33	263					0	0	1	0	0
CFB	629	broad.mit.edu	37	6	31905101	31905101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31905101G>A	uc011dor.1	+	5	799	c.535G>A	c.(535-537)GAA>AAA	p.E179K	C2_uc003nyc.2_Missense_Mutation_p.E119K|C2_uc011doo.1_Missense_Mutation_p.E86K|C2_uc011dop.1_Missense_Mutation_p.E118K|C2_uc003nyf.2_Missense_Mutation_p.E332K|C2_uc010jtk.2_Missense_Mutation_p.E200K|C2_uc011doq.1_Missense_Mutation_p.E303K|C2_uc003nyg.2_Missense_Mutation_p.E109K|C2_uc003nyh.1_5'UTR	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						TCCAGATCATGAAAATGGAAC	0.463													18	254					0	0	1	0	0
C2	717	broad.mit.edu	37	6	31913069	31913069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31913069C>T	uc003nyf.2	+	18	2458	c.2194C>T	c.(2194-2196)CTC>TTC	p.L732F	C2_uc011doo.1_Missense_Mutation_p.L486F|C2_uc011dop.1_Missense_Mutation_p.L518F|C2_uc010jtk.2_Missense_Mutation_p.L600F|C2_uc011doq.1_Missense_Mutation_p.L703F|C2_uc003nyg.2_Missense_Mutation_p.L509F|CFB_uc011dor.1_Intron|C2_uc003nyh.1_3'UTR|CFB_uc011dos.1_5'Flank|CFB_uc003nyi.2_5'Flank|CFB_uc003nyj.3_5'Flank	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	732	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		TCACATCAATCTCTTCCGCAT	0.587													35	406					0	0	1	0	0
CFB	629	broad.mit.edu	37	6	31918460	31918460	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31918460G>A	uc003nyj.3	+	13	1967	c.1689G>A	c.(1687-1689)GGG>GGA	p.G563G	CFB_uc011dor.1_Silent_p.G1065G	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	563	Peptidase S1.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						ACATTAATGGGAAAAAAGAAG	0.458													18	328					0	0	1	0	0
SKIV2L	6499	broad.mit.edu	37	6	31932086	31932086	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31932086C>T	uc003nyn.1	+	17	2327	c.1938C>T	c.(1936-1938)ATC>ATT	p.I646I	SKIV2L_uc011dou.1_Silent_p.I488I|SKIV2L_uc011dov.1_Silent_p.I453I	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	646	Helicase C-terminal.					nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						TCAAGGAGATCGTGGAGATGC	0.617													20	259					0	0	1	0	0
SKIV2L	6499	broad.mit.edu	37	6	31932101	31932101	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:31932101C>T	uc003nyn.1	+	17	2342	c.1953C>T	c.(1951-1953)TTC>TTT	p.F651F	SKIV2L_uc011dou.1_Silent_p.F493F|SKIV2L_uc011dov.1_Silent_p.F458F	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	651	Helicase C-terminal.					nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						AGATGCTCTTCAGCCGTGGCC	0.587													15	244					0	0	1	0	0
CYP21A2	1589	broad.mit.edu	37	6	32006897	32006897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32006897G>A	uc003nze.1	+	3	437	c.319G>A	c.(319-321)GAC>AAC	p.D107N	CYP21A2_uc003nzf.1_Missense_Mutation_p.D77N	NM_000500	NP_000491	P08686	CP21A_HUMAN	cytochrome P450, family 21, subfamily A,	106					glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						GAACTACCCGGACCTGTCCTT	0.622													6	160					0	0	1	0	0
CYP21A2	1589	broad.mit.edu	37	6	32007585	32007585	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32007585C>T	uc003nze.1	+	6	829	c.711C>T	c.(709-711)ATC>ATT	p.I237I	CYP21A2_uc003nzf.1_Silent_p.I207I	NM_000500	NP_000491	P08686	CP21A_HUMAN	cytochrome P450, family 21, subfamily A,	236			I -> N (in AH3; salt wasting form).		glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						GGGATCACATCGTGGAGATGC	0.602													26	244					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32012952	32012952	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32012952G>A	uc003nzl.2	-	32	10954	c.10752C>T	c.(10750-10752)TTC>TTT	p.F3584F	TNXB_uc003nzg.1_Silent_p.F15F|TNXB_uc003nzh.1_Silent_p.F53F	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3631	Fibronectin type-III 28.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						ACTGGACCACGAAGGAATCAA	0.647													18	379					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32017293	32017293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32017293C>T	uc003nzl.2	-	28	9707	c.9505G>A	c.(9505-9507)GAG>AAG	p.E3169K	TNXB_uc003nzh.1_5'Flank	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3216	Fibronectin type-III 24.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						ACTGTCAACTCCCCCAGGAGC	0.652													56	356					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32020538	32020538	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32020538C>T	uc003nzl.2	-	26	9220	c.9018G>A	c.(9016-9018)GGG>GGA	p.G3006G		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3053	Fibronectin type-III 22.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCTCCAGGCCCCCCACGGTGA	0.672													14	326					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32026058	32026058	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32026058G>A	uc003nzl.2	-	22	7804	c.7602C>T	c.(7600-7602)TCC>TCT	p.S2534S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2594	Fibronectin type-III 18.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCGAGTCAGGGGAGGATCCTG	0.677													42	324					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32026072	32026072	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32026072C>G	uc003nzl.2	-	22	7790	c.7588G>C	c.(7588-7590)GTG>CTG	p.V2530L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2590	Fibronectin type-III 18.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GATCCTGTCACTGTCAGCTCC	0.662													25	336					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32035753	32035753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32035753C>T	uc003nzl.2	-	18	6431	c.6229G>A	c.(6229-6231)GAA>AAA	p.E2077K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGGGTCTCTTCCTCTGCAGCT	0.632													17	285					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32046887	32046887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32046887C>T	uc003nzl.2	-	11	4500	c.4298G>A	c.(4297-4299)GGG>GAG	p.G1433E		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1520	Fibronectin type-III 7.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GTACTTGTGCCCGGGCTCTAG	0.687													37	197					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32050069	32050069	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32050069G>A	uc003nzl.2	-	9	3682	c.3480C>T	c.(3478-3480)CCC>CCT	p.P1160P		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1247	Fibronectin type-III 5.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TTCCCAGGTGGGGTGGAGTCC	0.562													33	325					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32052303	32052304	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32052303_32052304GG>AA	uc003nzl.2	-	8	3533_3534	c.3331_3332CC>TT	c.(3331-3333)CCC>TTC	p.P1111F		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1198	Fibronectin type-III 4.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CGAGCGCTGGGGTCCTTCCACG	0.614													39	598					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32053854	32053854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32053854G>A	uc003nzl.2	-	7	3023	c.2821C>T	c.(2821-2823)CCT>TCT	p.P941S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCTGAGGGAGGAGGCTCATCG	0.622													15	183					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32065776	32065776	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32065776C>T	uc003nzl.2	-	2	402	c.200G>A	c.(199-201)GGG>GAG	p.G67E	TNXB_uc010jts.1_Missense_Mutation_p.G66E|ATF6B_uc003nzm.1_3'UTR	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	67					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CTGCTTCTCCCCTCCTTCCAC	0.657													27	281					0	0	1	0	0
GPSM3	63940	broad.mit.edu	37	6	32159677	32159677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32159677G>A	uc003oay.3	-	3	547	c.154C>T	c.(154-156)CCC>TCC	p.P52S	PBX2_uc003oav.1_5'Flank|PBX2_uc003oaw.2_5'Flank|GPSM3_uc003oax.3_Intron|GPSM3_uc003oaz.2_Missense_Mutation_p.P52S	NM_022107	NP_071390	Q9Y4H4	GPSM3_HUMAN	G-protein signaling modulator 3 (AGS3-like, C.	52					signal transduction	cytoplasm	GTPase activator activity|protein binding				0						GCCGAGCGGGGTCCCAGGGCT	0.662													20	174					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32188271	32188271	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32188271T>G	uc003obb.2	-	6	1209	c.1070A>C	c.(1069-1071)GAT>GCT	p.D357A	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.D357A	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	357	EGF-like 9; calcium-binding (Potential).|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						AATACAGTCATCCAGGTTCTC	0.612													17	281					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32190842	32190842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32190842G>A	uc003obb.2	-	2	234	c.95C>T	c.(94-96)CCA>CTA	p.P32L	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.P32L	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	32	Extracellular (Potential).|EGF-like 1.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						ACAGGGTTCTGGGAAACTCCC	0.537													9	163					0	0	1	0	0
HLA-DRA	3122	broad.mit.edu	37	6	32410965	32410965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32410965C>T	uc003obh.2	+	3	413	c.332C>T	c.(331-333)CCT>CTT	p.P111L	HLA-DRA_uc003obi.2_Intron	NM_019111	NP_061984	P01903	DRA_HUMAN	major histocompatibility complex, class II, DR	111	Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to plasma membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity			ovary(1)|skin(1)	2						CCCCCAGTACCTCCAGAGGTA	0.502									T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Kaposi_Sarcoma_Familial_Clustering_of				3	32					0	0	1	0	0
TAP2	6891	broad.mit.edu	37	6	32797738	32797738	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32797738G>A	uc003occ.2	-	9	1795	c.1764C>T	c.(1762-1764)TTC>TTT	p.F588F	TAP2_uc011dqf.1_Silent_p.F588F|TAP2_uc003ocb.1_Silent_p.F588F|TAP2_uc003ocd.2_Silent_p.F588F	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	588	ABC transporter.|Cytoplasmic (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						TTTCCTGGATGAAGTCATCTG	0.463													6	112					0	0	1	0	0
TAP1	6890	broad.mit.edu	37	6	32818754	32818754	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32818754G>A	uc003ocg.2	-	4	1352	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F	TAP1_uc011dqi.1_Silent_p.F138F	NM_000593	NP_000584	Q03518	TAP1_HUMAN	transporter 1, ATP-binding cassette, sub-family	399	Helical; Name=8; (Potential).|ABC transmembrane type-1.				antigen processing and presentation of endogenous peptide antigen via MHC class I|cytosol to ER transport|intracellular transport of viral proteins in host cell|positive regulation of T cell mediated cytotoxicity	cytosol|plasma membrane|TAP complex	ADP binding|ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|protein homodimerization activity|TAP1 binding|TAP2 binding|tapasin binding			skin(1)	1						TGGGCAGAAGGAAAAGCAGAG	0.547													8	69					0	0	1	0	0
BRD2	6046	broad.mit.edu	37	6	32944418	32944418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:32944418C>T	uc003ocn.3	+	7	2606	c.905C>T	c.(904-906)CCT>CTT	p.P302L	BRD2_uc003oco.2_RNA|BRD2_uc003ocq.3_Missense_Mutation_p.P302L|BRD2_uc003ocp.3_Missense_Mutation_p.P182L|BRD2_uc010juh.2_Missense_Mutation_p.P302L	NM_005104	NP_005095	P25440	BRD2_HUMAN	bromodomain containing 2	302					spermatogenesis	nucleus	protein serine/threonine kinase activity			central_nervous_system(3)|stomach(2)	5						CCAGCTAGCCCTCCTGGGAGT	0.547													14	58					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33137636	33137636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:33137636G>A	uc003ocx.1	-	50	3890	c.3662C>T	c.(3661-3663)CCA>CTA	p.P1221L	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.P1135L|COL11A2_uc003ocz.1_Missense_Mutation_p.P1114L	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1221	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CTGGATCCCTGGAGATCCTGA	0.547													10	76					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33154504	33154504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:33154504C>T	uc003ocx.1	-	5	926	c.698G>A	c.(697-699)AGG>AAG	p.R233K	COL11A2_uc003ocy.1_Missense_Mutation_p.R233K|COL11A2_uc003ocz.1_Missense_Mutation_p.R233K|COL11A2_uc003oda.2_Missense_Mutation_p.R233K	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	233	Nonhelical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GGGTCTTTCCCTCTGGCCCCC	0.562													35	118					0	0	1	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333846	33333846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:33333846C>T	uc003shx.2	-	1	294	c.160G>A	c.(160-162)GAG>AAG	p.E54K		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						ATCCTAGGCTCATGGGAACAG	0.557													9	50					0	0	1	0	0
ZBTB9	221504	broad.mit.edu	37	6	33423398	33423398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:33423398C>T	uc003oeq.2	+	2	789	c.521C>T	c.(520-522)TCG>TTG	p.S174L		NM_152735	NP_689948	Q96C00	ZBTB9_HUMAN	zinc finger and BTB domain containing 9	174					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATTCGCTCTTCGCCTTTCCAG	0.542													23	127					0	0	1	0	0
GRM4	2914	broad.mit.edu	37	6	34059748	34059748	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:34059748G>A	uc003oir.3	-	2	818	c.648C>T	c.(646-648)CTC>CTT	p.L216L	GRM4_uc011dsn.1_Silent_p.L216L|GRM4_uc010jvh.2_Silent_p.L216L|GRM4_uc010jvi.2_Intron|GRM4_uc010jvk.1_Silent_p.L135L|GRM4_uc011dsl.1_Silent_p.L76L|GRM4_uc003oiq.2_Silent_p.L83L|GRM4_uc011dsm.1_Silent_p.L47L	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	216	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	AGTTCCACTTGAGGGCACGGA	0.617													5	41					0	0	1	0	0
PACSIN1	29993	broad.mit.edu	37	6	34498236	34498236	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:34498236G>A	uc003ojo.2	+	8	1116	c.910_splice	c.e8-1	p.E304_splice	PACSIN1_uc003ojp.2_Splice_Site_p.E304_splice	NM_020804	NP_065855	Q9BY11	PACN1_HUMAN	protein kinase C and casein kinase substrate in						endocytosis		protein kinase activity				0						GGCCCCACCAGGAGTGGAACC	0.597													3	19					0	0	1	0	0
ANKS1A	23294	broad.mit.edu	37	6	35048896	35048896	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:35048896C>T	uc003ojx.3	+	17	2812	c.2670C>T	c.(2668-2670)GAC>GAT	p.D890D	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_Silent_p.D430D|ANKS1A_uc010jvp.1_Silent_p.D264D	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	890						cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						GTCTCCATGACCCTGCGGCAC	0.652													4	29					0	0	1	0	0
SCUBE3	222663	broad.mit.edu	37	6	35210073	35210073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:35210073G>A	uc003okf.1	+	13	1516	c.1510G>A	c.(1510-1512)GAG>AAG	p.E504K	SCUBE3_uc003okg.1_Missense_Mutation_p.E503K|SCUBE3_uc003okh.1_Missense_Mutation_p.E391K	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	504					protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						CAAAACAGAGGAGGCTGGCAG	0.547													4	75					0	0	1	0	0
FKBP5	2289	broad.mit.edu	37	6	35547963	35547963	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:35547963C>T	uc011dte.1	-	9	1079	c.876G>A	c.(874-876)GGG>GGA	p.G292G	FKBP5_uc003okx.2_Silent_p.G292G|FKBP5_uc011dtf.1_Silent_p.G113G|FKBP5_uc003oky.2_Silent_p.G292G	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	292	TPR 1.				protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						ACACTATCTTCCCATACTGAA	0.428													8	90					0	0	1	0	0
FKBP5	2289	broad.mit.edu	37	6	35588003	35588003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:35588003C>T	uc011dte.1	-	4	502	c.299G>A	c.(298-300)GGA>GAA	p.G100E	FKBP5_uc003okx.2_Missense_Mutation_p.G100E|FKBP5_uc011dtf.1_Intron|FKBP5_uc003oky.2_Missense_Mutation_p.G100E|FKBP5_uc003okz.2_Missense_Mutation_p.G100E	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	100	PPIase FKBP-type 1.				protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						GCATATCTCTCCTTTCTTCAT	0.433													4	56					0	0	1	0	0
C6orf81	221481	broad.mit.edu	37	6	35705835	35705836	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:35705835_35705836GG>AT	uc003ola.2	+	2	303_304	c.276_277GG>AT	c.(274-279)CGGGAC>CGATAC	p.D93Y	LOC285847_uc010jvy.1_5'Flank|C6orf81_uc003olb.1_Missense_Mutation_p.D66Y	NM_145028	NP_659465	Q5T9G4	CF081_HUMAN	hypothetical protein LOC221481	66							binding			ovary(1)	1						GGCACGGGCGGGACTCAGGTGA	0.564											OREG0017379	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	70					0	0	1	0	0
SRPK1	6732	broad.mit.edu	37	6	35837316	35837316	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:35837316C>A	uc003olj.2	-	11	1477	c.1354G>T	c.(1354-1356)GAG>TAG	p.E452*	SRPK1_uc011dtg.1_Nonsense_Mutation_p.E436*|SRPK1_uc003olh.2_Nonsense_Mutation_p.E345*|SRPK1_uc003oli.2_Nonsense_Mutation_p.E345*	NM_003137	NP_003128	Q96SB4	SRPK1_HUMAN	SFRS protein kinase 1	452	Protein kinase.				cell differentiation|chromosome segregation|interspecies interaction between organisms|intracellular protein kinase cascade|mRNA processing|negative regulation of viral genome replication|positive regulation of viral genome replication|regulation of mRNA processing|RNA splicing	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						CAGGGTATCTCTGCCCGAATG	0.468													12	90					0.000978159	0.000987223	1	1	0
PNPLA1	285848	broad.mit.edu	37	6	36270122	36270122	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:36270122C>T	uc010jwf.2	+	6	1260	c.1260C>T	c.(1258-1260)CCC>CCT	p.P420P	PNPLA1_uc003olw.1_Silent_p.P325P|PNPLA1_uc010jwe.1_Silent_p.P334P	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	420	Pro-rich.				lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						CTCAGGCACCCACTTCACCCA	0.607											OREG0017382	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	71					0	0	1	0	0
PNPLA1	285848	broad.mit.edu	37	6	36270127	36270127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:36270127C>T	uc010jwf.2	+	6	1265	c.1265C>T	c.(1264-1266)TCA>TTA	p.S422L	PNPLA1_uc003olw.1_Missense_Mutation_p.S327L|PNPLA1_uc010jwe.1_Missense_Mutation_p.S336L	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	422	Pro-rich.				lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						GCACCCACTTCACCCAGGCCA	0.602											OREG0017382	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	61					0	0	1	0	0
C6orf222	389384	broad.mit.edu	37	6	36290136	36290136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:36290136C>T	uc003oly.2	-	9	1733	c.1555G>A	c.(1555-1557)GGC>AGC	p.G519S		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	519										skin(2)|ovary(1)|breast(1)	4						GGCGTGTGGCCTCTAGCCTGG	0.582													12	86					0	0	1	0	0
C6orf222	389384	broad.mit.edu	37	6	36298147	36298147	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:36298147G>A	uc003oly.2	-	2	499	c.321C>T	c.(319-321)TTC>TTT	p.F107F		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	107										skin(2)|ovary(1)|breast(1)	4						CCGTCCTCACGAAGAAGTTCA	0.632													7	69					0	0	1	0	0
C6orf222	389384	broad.mit.edu	37	6	36298165	36298165	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:36298165C>T	uc003oly.2	-	2	481	c.303G>A	c.(301-303)AAG>AAA	p.K101K		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	101										skin(2)|ovary(1)|breast(1)	4						TCAGCATGGTCTTCAGCCACC	0.627													8	67					0	0	1	0	0
C6orf222	389384	broad.mit.edu	37	6	36298431	36298431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:36298431C>T	uc003oly.2	-	2	215	c.37G>A	c.(37-39)GAG>AAG	p.E13K		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	13										skin(2)|ovary(1)|breast(1)	4						GCTTTCTTCTCCGCCAGGGGC	0.532													4	67					0	0	1	0	0
ETV7	51513	broad.mit.edu	37	6	36343727	36343727	+	Silent	SNP	C	T	T	rs149881845	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:36343727C>T	uc003omb.2	-	3	377	c.228G>A	c.(226-228)GCG>GCA	p.A76A	ETV7_uc003olz.1_Silent_p.A76A|ETV7_uc003oma.1_Intron|ETV7_uc010jwg.2_RNA|ETV7_uc003omc.2_Intron|ETV7_uc010jwj.2_Missense_Mutation_p.G4R|ETV7_uc010jwh.2_5'UTR|ETV7_uc010jwi.2_Silent_p.A76A|ETV7_uc011dtl.1_Intron	NM_016135	NP_057219	Q9Y603	ETV7_HUMAN	ets variant 7	76	PNT.				organ morphogenesis|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						ACCCGTGCTCCGCGGTGCATG	0.652													6	53					0	0	1	0	0
PXT1	222659	broad.mit.edu	37	6	36359601	36359601	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:36359601G>A	uc003omd.1	-	2	132	c.102C>T	c.(100-102)TTC>TTT	p.F34F		NM_152990	NP_694535	Q8NFP0	PXT1_HUMAN	peroxisomal, testis specific 1	34						peroxisome					0						CTCTTCTAAAGAAAAAGAAGA	0.343													9	84					0	0	1	0	0
CPNE5	57699	broad.mit.edu	37	6	36767781	36767781	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:36767781A>C	uc003omr.1	-	4	317	c.250T>G	c.(250-252)TAC>GAC	p.Y84D	CPNE5_uc003oms.1_Missense_Mutation_p.Y46D	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	84	C2 1.									skin(1)	1						TCGAAAAAGTAATCCACAATG	0.522													6	36					0	0	1	0	0
C6orf89	221477	broad.mit.edu	37	6	36882459	36882459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:36882459C>T	uc003omx.2	+	6	969	c.685C>T	c.(685-687)CCT>TCT	p.P229S	C6orf89_uc003omv.2_Missense_Mutation_p.P123S|C6orf89_uc003omw.2_Missense_Mutation_p.P236S|C6orf89_uc011dtr.1_Missense_Mutation_p.P123S|C6orf89_uc003omy.2_Missense_Mutation_p.P63S	NM_152734	NP_689947	Q6UWU4	CF089_HUMAN	hypothetical protein LOC221477	229						integral to membrane				ovary(1)	1						GTTCCCATTTCCTTATCCATG	0.318													9	115					0	0	1	0	0
FGD2	221472	broad.mit.edu	37	6	36973614	36973614	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:36973614G>A	uc010jwp.1	+	1	192	c.21G>A	c.(19-21)GAG>GAA	p.E7E	FGD2_uc003onf.2_Silent_p.E7E|FGD2_uc011dtu.1_Silent_p.E7E|FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_5'UTR	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	7					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						CAAGTGAGGAGAAGCTGGCAT	0.617													4	42					0	0	1	0	0
FGD2	221472	broad.mit.edu	37	6	36995237	36995237	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:36995237G>A	uc010jwp.1	+	15	1809	c.1638G>A	c.(1636-1638)CTG>CTA	p.L546L	FGD2_uc003ong.2_Silent_p.L268L|FGD2_uc011dtv.1_Silent_p.L174L|FGD2_uc003onj.1_Silent_p.L123L	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	546	PH 2.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						ACCAGAGCCTGATGTGCAGCT	0.547													7	109					0	0	1	0	0
TMEM217	221468	broad.mit.edu	37	6	37186564	37186564	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:37186564G>A	uc003onl.2	-	2	324	c.243C>T	c.(241-243)TTC>TTT	p.F81F	TMEM217_uc010jwr.2_Silent_p.F81F|TMEM217_uc010jws.2_Intron|TMEM217_uc003onm.3_Silent_p.F81F	NM_145316	NP_660359	Q8N7C4	TM217_HUMAN	transmembrane protein 217 isoform 1	81	Helical; (Potential).					integral to membrane					0						AGTACAGGAGGAAGCAGCTGA	0.423													6	77					0	0	1	0	0
FTSJD2	23070	broad.mit.edu	37	6	37411833	37411833	+	Silent	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:37411833T>G	uc003ons.2	+	3	445	c.192T>G	c.(190-192)TCT>TCG	p.S64S	FTSJD2_uc010jwu.2_Silent_p.S64S	NM_015050	NP_055865	Q8N1G2	MTR1_HUMAN	FtsJ methyltransferase domain containing 2	64					mRNA capping	cytoplasm|nucleus	mRNA (nucleoside-2'-O-)-methyltransferase activity|nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						AACACAGCTCTGACTCTTTTG	0.428													10	60					0	0	1	0	0
MDGA1	266727	broad.mit.edu	37	6	37619923	37619923	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:37619923C>T	uc003onu.1	-	7	2355	c.1176G>A	c.(1174-1176)GAG>GAA	p.E392E	MDGA1_uc003onw.3_RNA	NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	392	Ig-like 4.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						CTGCGGGCAGCTCAGGATCAT	0.602													11	73					0	0	1	0	0
MDGA1	266727	broad.mit.edu	37	6	37622190	37622191	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:37622190_37622191GG>AA	uc003onu.1	-	6	2020_2021	c.841_842CC>TT	c.(841-843)CCA>TTA	p.P281L	MDGA1_uc003onw.3_5'Flank	NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	281	Ig-like 3.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						CAGGGGCAGTGGGCCAGGCCCA	0.639													4	32					0	0	1	0	0
BTBD9	114781	broad.mit.edu	37	6	38561937	38561937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:38561937G>A	uc003ooa.3	-	4	928	c.352C>T	c.(352-354)CAT>TAT	p.H118Y	BTBD9_uc003ony.3_Missense_Mutation_p.H50Y|BTBD9_uc010jwv.2_Missense_Mutation_p.H50Y|BTBD9_uc010jww.2_RNA|BTBD9_uc010jwx.2_Missense_Mutation_p.H118Y	NM_052893	NP_443125	Q96Q07	BTBD9_HUMAN	BTB (POZ) domain containing 9 isoform a	118					cell adhesion						0						CCATATTTATGAGCCAGGCTC	0.448													15	197					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38702323	38702323	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:38702323G>A	uc003ooe.1	+	3	633	c.33G>A	c.(31-33)CCG>CCA	p.P11P	DNAH8_uc003ood.1_Silent_p.P228P	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8									p.P11P(1)		skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATGCAGCCCCGGATAAACTAA	0.353													5	36					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38729526	38729526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:38729526G>A	uc003ooe.1	+	9	1513	c.913G>A	c.(913-915)GGA>AGA	p.G305R		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TACTGATGGAGGATTAAACCA	0.289													4	13					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38781841	38781841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:38781841G>A	uc003ooe.1	+	23	3218	c.2618G>A	c.(2617-2619)CGA>CAA	p.R873Q		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CTTTATGGGCGAAAGCAGTCA	0.313													4	40					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38950129	38950129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:38950129G>A	uc003ooe.1	+	84	12791	c.12191G>A	c.(12190-12192)CGA>CAA	p.R4064Q	DNAH8_uc003oog.1_Missense_Mutation_p.R513Q	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAGGAGCGACGAAAATTTGGC	0.343													7	42					0	0	1	0	0
GLP1R	2740	broad.mit.edu	37	6	39040750	39040750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:39040750G>A	uc003ooj.3	+	6	682	c.622G>A	c.(622-624)GCC>ACC	p.A208T	GLP1R_uc003ooh.2_RNA|GLP1R_uc003ooi.2_RNA	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor	208	Extracellular (Potential).				activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	GTATAGCACAGCCGCCCAGCA	0.597													12	62					0	0	1	0	0
GLP1R	2740	broad.mit.edu	37	6	39047471	39047471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:39047471C>T	uc003ooj.3	+	11	1235	c.1175C>T	c.(1174-1176)TCC>TTC	p.S392F	GLP1R_uc003ooh.2_RNA|GLP1R_uc003ooi.2_RNA	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor	392	Helical; Name=7; (Potential).				activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	TCCTTCACCTCCTTCCAGGTG	0.527													5	59					0	0	1	0	0
KCNK5	8645	broad.mit.edu	37	6	39159286	39159286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:39159286G>A	uc003oon.2	-	5	1244	c.880C>T	c.(880-882)CTT>TTT	p.L294F		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	294	Cytoplasmic (Potential).				excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						TTCTTGGAAAGAAAGCTGAAG	0.607													12	181					0	0	1	0	0
KCNK17	89822	broad.mit.edu	37	6	39267342	39267342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:39267342G>A	uc003ooo.2	-	5	1000	c.860C>T	c.(859-861)TCC>TTC	p.S287F	KCNK17_uc003oop.2_3'UTR	NM_031460	NP_113648	Q96T54	KCNKH_HUMAN	potassium channel, subfamily K, member 17	287	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2						CCAGCTTTGGGACTTGAAGTC	0.567													7	48					0	0	1	0	0
KCNK16	83795	broad.mit.edu	37	6	39282887	39282888	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:39282887_39282888CC>TT	uc003ooq.2	-	6	834_835	c.820_821GG>AA	c.(820-822)GGA>AAA	p.G274K	KCNK17_uc003ooo.2_5'Flank|KCNK17_uc003oop.2_5'Flank|KCNK16_uc003oor.3_3'UTR|KCNK16_uc010jwy.2_Missense_Mutation_p.G227K	NM_032115	NP_115491	Q96T55	KCNKG_HUMAN	potassium channel, subfamily K, member 16	274	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(1)	3						CGCCTTGGCTCCACAGCCTTGC	0.589													10	73					0	0	1	0	0
KIF6	221458	broad.mit.edu	37	6	39688533	39688533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:39688533G>A	uc003oot.2	-	2	216	c.121C>T	c.(121-123)CCA>TCA	p.P41S	KIF6_uc011dua.1_Missense_Mutation_p.P41S|KIF6_uc010jxb.1_Missense_Mutation_p.P41S	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	41	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						AAATCACGTGGTAAGATGATT	0.299													4	51					0	0	1	0	0
LRFN2	57497	broad.mit.edu	37	6	40360022	40360022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:40360022C>T	uc003oph.1	-	3	2495	c.2030G>A	c.(2029-2031)AGG>AAG	p.R677K		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	677	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GGCTGGAGTCCTGGAGTCCAG	0.731													6	14					0	0	1	0	0
TREML2	79865	broad.mit.edu	37	6	41162324	41162324	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:41162324G>A	uc010jxm.1	-	3	803	c.624C>T	c.(622-624)TCC>TCT	p.S208S		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	208	Extracellular (Potential).				T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					TCACTGTCTGGGACCCCATGG	0.617													7	34					0	0	1	0	0
TREML2P1	221438	broad.mit.edu	37	6	41217213	41217213	+	RNA	SNP	C	T	T	rs61734087		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:41217213C>T	uc003oqe.1	+	1		c.99C>T				NR_002794				Homo sapiens TREM-like transcript 5 (TLT5) pseudogene mRNA, partial sequence.												0						AGCCTGGTTTCACCCAAGTCT	0.562													7	59					0	0	1	0	0
NCR2	9436	broad.mit.edu	37	6	41318520	41318520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:41318520C>T	uc003oqh.2	+	5	836	c.749C>T	c.(748-750)TCC>TTC	p.S250F	NCR2_uc003oqi.2_3'UTR|NCR2_uc003oqj.2_3'UTR	NM_004828	NP_004819	O95944	NCTR2_HUMAN	natural cytotoxicity triggering receptor 2	250	Cytoplasmic (Potential).				cellular defense response	integral to plasma membrane	transmembrane receptor activity			ovary(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					acctcagtttcctcacctgta	0.159													4	19					0	0	1	0	0
FOXP4	116113	broad.mit.edu	37	6	41555131	41555131	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:41555131C>T	uc003oql.2	+	7	1211	c.753C>T	c.(751-753)GAC>GAT	p.D251D	FOXP4_uc003oqm.2_Silent_p.D249D|FOXP4_uc003oqn.2_Silent_p.D250D	NM_001012426	NP_001012426	Q8IVH2	FOXP4_HUMAN	forkhead box P4 isoform 1	251					embryonic foregut morphogenesis|heart development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					AGGGGCTGGACCTCACTGGCA	0.687											OREG0004065	type=REGULATORY REGION|Gene=FOXP4|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	5	83					0	0	1	0	0
USP49	25862	broad.mit.edu	37	6	41767678	41767678	+	Splice_Site	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:41767678T>C	uc003ori.2	-	6	1784	c.1562_splice	c.e6-1	p.S521_splice		NM_018561	NP_061031	Q70CQ1	UBP49_HUMAN	ubiquitin thioesterase 49						ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0919)|Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000309)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GTCGTTTGCCTATGTGGTTTG	0.333													4	91					0	0	1	0	0
MED20	9477	broad.mit.edu	37	6	41877043	41877043	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:41877043G>A	uc003ork.2	-	3	508	c.387C>T	c.(385-387)GTC>GTT	p.V129V	MED20_uc003orj.2_Silent_p.V64V|MED20_uc011duh.1_Intron|MED20_uc011dui.1_Intron|MED20_uc011duj.1_Silent_p.V64V	NM_004275	NP_004266	Q9H944	MED20_HUMAN	Trf (TATA binding protein-related	129					regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	mediator complex	DNA-directed RNA polymerase activity|protein binding				0	Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000367)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GCCCCATTGTGACCGTGCCCA	0.562													13	88					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42236862	42236862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:42236862C>T	uc003osd.2	-	5	1030	c.467G>A	c.(466-468)CGA>CAA	p.R156Q	TRERF1_uc011duq.1_Missense_Mutation_p.R156Q|TRERF1_uc003osb.2_5'UTR|TRERF1_uc003osc.2_5'UTR|TRERF1_uc003ose.2_Missense_Mutation_p.R156Q	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	156					cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GACCTGAATTCGCAGGTTTTG	0.567													32	189					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42237033	42237033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:42237033C>T	uc003osd.2	-	5	859	c.296G>A	c.(295-297)GGA>GAA	p.G99E	TRERF1_uc011duq.1_Missense_Mutation_p.G99E|TRERF1_uc003osb.2_Intron|TRERF1_uc003osc.2_Intron|TRERF1_uc003ose.2_Missense_Mutation_p.G99E	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	99					cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GGCCAGGTTTCCACGTAGCTG	0.592													22	126					0	0	1	0	0
TRERF1	55809	broad.mit.edu	37	6	42237081	42237081	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:42237081C>T	uc003osd.2	-	5	811	c.248G>A	c.(247-249)GGA>GAA	p.G83E	TRERF1_uc011duq.1_Missense_Mutation_p.G83E|TRERF1_uc003osb.2_Intron|TRERF1_uc003osc.2_Intron|TRERF1_uc003ose.2_Missense_Mutation_p.G83E	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	83					cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			TCCCCACCCTCCCTGCCTCGA	0.597													18	90					0	0	1	0	0
GNMT	27232	broad.mit.edu	37	6	42931281	42931281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:42931281G>A	uc003otd.2	+	6	731	c.725G>A	c.(724-726)CGG>CAG	p.R242Q	uc003ote.1_5'Flank	NM_018960	NP_061833	Q14749	GNMT_HUMAN	glycine N-methyltransferase	242					protein homotetramerization|protein modification process|S-adenosylmethionine metabolic process		folic acid binding|glycine binding|glycine N-methyltransferase activity				0	Colorectal(47;0.196)		all cancers(41;0.00196)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0461)		Glycine(DB00145)|S-Adenosylmethionine(DB00118)	AGTAAGTTCCGGCTCTCCTAC	0.592													11	60					0	0	1	0	0
KLC4	89953	broad.mit.edu	37	6	43030843	43030843	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:43030843C>T	uc003otv.1	+	3	524	c.447C>T	c.(445-447)TTC>TTT	p.F149F	KLC4_uc003otr.1_RNA|KLC4_uc011dvd.1_Intron|KLC4_uc003otu.2_Silent_p.F149F|KLC4_uc003otw.1_Silent_p.F167F|KLC4_uc003otx.1_Silent_p.F149F|KLC4_uc003oty.1_Silent_p.F149F|KLC4_uc003otz.1_Silent_p.F149F	NM_201521	NP_958929	Q9NSK0	KLC4_HUMAN	kinesin-like 8 isoform a	149	Potential.					cytoplasm|kinesin complex|microtubule	microtubule motor activity|protein binding			skin(3)|ovary(1)	4			all cancers(41;0.00169)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0376)|KIRC - Kidney renal clear cell carcinoma(2;0.0453)			ACCTGGAGTTCCTGGGGCAGC	0.622													10	44					0	0	1	0	0
SRF	6722	broad.mit.edu	37	6	43144299	43144299	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:43144299C>T	uc003oui.2	+	4	1531	c.1056C>T	c.(1054-1056)GCC>GCT	p.A352A	SRF_uc011dvf.1_Silent_p.A148A	NM_003131	NP_003122	P11831	SRF_HUMAN	serum response factor (c-fos serum response	352					angiogenesis involved in wound healing|cell migration involved in sprouting angiogenesis|cellular senescence|heart looping|muscle cell homeostasis|neuron development|positive regulation of cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription via serum response element binding|regulation of smooth muscle cell differentiation|response to cytokine stimulus|response to hormone stimulus|response to toxin|transcription from RNA polymerase II promoter|trophectodermal cell differentiation	endoplasmic reticulum	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|serum response element binding|transcription factor binding			ovary(1)|breast(1)|central_nervous_system(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.011)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			GGGCAGTGGCCCAGCAGGTCC	0.617													8	70					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43251172	43251172	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:43251172G>A	uc003ouq.1	+	14	2973	c.2694G>A	c.(2692-2694)CCG>CCA	p.P898P		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	898						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			CCAAGCCCCCGGGGCCTGGGG	0.672													9	30					0	0	1	0	0
SLC22A7	10864	broad.mit.edu	37	6	43269367	43269367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:43269367C>T	uc003out.2	+	7	1097	c.998C>T	c.(997-999)TCA>TTA	p.S333L	SLC22A7_uc010jyl.1_Missense_Mutation_p.S334L|SLC22A7_uc003ous.2_Missense_Mutation_p.S331L	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	333						basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			CGAAGACCTTCATACCTAGAC	0.582													5	33					0	0	1	0	0
ZNF318	24149	broad.mit.edu	37	6	43325408	43325408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:43325408G>A	uc003oux.2	-	3	722	c.644C>T	c.(643-645)CCC>CTC	p.P215L	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	215					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			TCCCAAGAAGGGACTGAGAGG	0.493													7	48					0	0	1	0	0
ABCC10	89845	broad.mit.edu	37	6	43403497	43403497	+	Silent	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:43403497G>T	uc003ouy.1	+	5	1832	c.1617G>T	c.(1615-1617)ACG>ACT	p.T539T	ABCC10_uc003ouz.1_Silent_p.T496T|ABCC10_uc010jyo.1_5'UTR	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	539	ABC transmembrane type-1 1.|Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			AGGTGTTCACGGCCCTGGCAC	0.562													4	27					0.150653	0.151501	1	1	0
ABCC10	89845	broad.mit.edu	37	6	43416877	43416877	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:43416877C>T	uc003ouy.1	+	20	4353	c.4138C>T	c.(4138-4140)CGG>TGG	p.R1380W	ABCC10_uc003ouz.1_Missense_Mutation_p.R1352W|ABCC10_uc010jyo.1_Missense_Mutation_p.R486W	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	1380	ABC transporter 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			TGAGGGGGGCCGGAGCTTATC	0.582													6	95					0	0	1	0	0
DLK2	65989	broad.mit.edu	37	6	43418411	43418411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:43418411C>T	uc003ova.2	-	6	1227	c.1018G>A	c.(1018-1020)GGA>AGA	p.G340R	DLK2_uc003ovb.2_Missense_Mutation_p.G340R	NM_023932	NP_076421	Q6UY11	DLK2_HUMAN	EGF-like-domain, multiple 9 precursor	340	Cytoplasmic (Potential).					integral to membrane	calcium ion binding				0	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			CAACAGGGTCCAGGGGGGCAG	0.657													5	40					0	0	1	0	0
GTPBP2	54676	broad.mit.edu	37	6	43591732	43591732	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:43591732G>A	uc003ovs.2	-	8	1211	c.1174C>T	c.(1174-1176)CTG>TTG	p.L392L	GTPBP2_uc010jyv.2_Silent_p.L304L|GTPBP2_uc003ovt.1_Silent_p.L392L	NM_019096	NP_061969	Q9BX10	GTPB2_HUMAN	GTP binding protein 2	392							GTP binding|GTPase activity			liver(1)|skin(1)	2	all_cancers(18;9.36e-06)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000501)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			AGTGGCGGCAGAATATTCAGA	0.512													7	104					0	0	1	0	0
RSPH9	221421	broad.mit.edu	37	6	43624454	43624454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:43624454C>T	uc003ovw.1	+	4	690	c.664C>T	c.(664-666)CCC>TCC	p.P222S	RSPH9_uc003ovx.1_Missense_Mutation_p.P207S	NM_152732	NP_689945	Q9H1X1	RSPH9_HUMAN	radial spoke head 9 homolog	222					cilium axoneme assembly|cilium movement	cytoplasm|cytoskeleton				upper_aerodigestive_tract(1)|skin(1)	2						GCATGACATTCCCAAAGGTAA	0.522									Kartagener_syndrome				10	124					0	0	1	0	0
C6orf223	221416	broad.mit.edu	37	6	43968829	43968829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:43968829C>T	uc003own.2	+	2	175	c.157C>T	c.(157-159)CTC>TTC	p.L53F	uc003owm.1_RNA|C6orf223_uc003owo.2_Missense_Mutation_p.L33F	NM_153246	NP_694978	Q8N319	CF223_HUMAN	hypothetical protein LOC221416	53											0	all_cancers(18;2.28e-07)|all_epithelial(2;1.62e-08)|Lung NSC(15;0.000172)|all_lung(25;0.000533)|Hepatocellular(11;0.00309)|Ovarian(13;0.0437)		all cancers(41;0.00141)|Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.217)			TTCAGCTGTCCTCAaagcagg	0.408													5	115					0	0	1	0	0
TMEM63B	55362	broad.mit.edu	37	6	44102477	44102477	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:44102477C>T	uc003owr.2	+	2	220	c.156C>T	c.(154-156)TTC>TTT	p.F52F	TMEM63B_uc003owq.1_Silent_p.F52F|TMEM63B_uc010jyy.1_5'UTR|TMEM63B_uc003ows.2_5'Flank	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	52	Helical; (Potential).					integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			TCATGTGCTTCCTTGTAAGTG	0.612													11	88					0	0	1	0	0
CAPN11	11131	broad.mit.edu	37	6	44144700	44144700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:44144700G>A	uc003owt.1	+	11	1240	c.1202G>A	c.(1201-1203)AGA>AAA	p.R401K	CAPN11_uc011dvn.1_Missense_Mutation_p.R55K	NM_007058	NP_008989	Q9UMQ6	CAN11_HUMAN	calpain 11	401	Domain III.				proteolysis	acrosomal vesicle	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)|breast(1)	2	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			AGCTGGCGCAGAGGCAGCTCC	0.632													32	182					0	0	1	0	0
SLC29A1	2030	broad.mit.edu	37	6	44199764	44199764	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:44199764C>T	uc003owu.1	+	10	1223	c.894C>T	c.(892-894)TTC>TTT	p.F298F	SLC29A1_uc003owv.1_Silent_p.F298F|SLC29A1_uc003oww.1_Silent_p.F377F|SLC29A1_uc003owx.1_Silent_p.F298F|SLC29A1_uc003owy.1_Silent_p.F298F|SLC29A1_uc003owz.1_Silent_p.F298F	NM_004955	NP_004946	Q99808	S29A1_HUMAN	equilibrative nucleoside transporter 1	298	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|basolateral plasma membrane|integral to plasma membrane|membrane fraction	nucleoside transmembrane transporter activity|protein binding			large_intestine(2)|skin(1)	3	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		Troglitazone(DB00197)	CTGTCTGCTTCATCTTCACTA	0.512													7	51					0	0	1	0	0
TCTE1	202500	broad.mit.edu	37	6	44247922	44247922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:44247922C>T	uc003oxi.2	-	5	1658	c.1502G>A	c.(1501-1503)GGA>GAA	p.G501E	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	501										ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GTCATTTTATCCCACAGAGTT	0.577													6	123					0	0	1	0	0
TCTE1	202500	broad.mit.edu	37	6	44248039	44248039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:44248039C>T	uc003oxi.2	-	5	1541	c.1385G>A	c.(1384-1386)AGC>AAC	p.S462N	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	462										ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GAGGTACTCGCTTTCCTGGGC	0.587													6	98					0	0	1	0	0
AARS2	57505	broad.mit.edu	37	6	44269121	44269121	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:44269121G>A	uc010jza.1	-	20	2682	c.2679C>T	c.(2677-2679)CTC>CTT	p.L893L	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	893					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	CACTCACTGAGAGAGACTCAG	0.602													9	166					0	0	1	0	0
AARS2	57505	broad.mit.edu	37	6	44272223	44272223	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:44272223G>A	uc010jza.1	-	13	1803	c.1800C>T	c.(1798-1800)ATC>ATT	p.I600I	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	600					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	CCTCATGCAGGATGAAACCTC	0.602											OREG0017473	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	43					0	0	1	0	0
AARS2	57505	broad.mit.edu	37	6	44278886	44278886	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:44278886G>A	uc010jza.1	-	4	597	c.594C>T	c.(592-594)AGC>AGT	p.S198S	SPATS1_uc003oxg.2_Intron	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	198					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	AAAGCACACGGCTAGCAGGCA	0.587													7	62					0	0	1	0	0
MEP1A	4224	broad.mit.edu	37	6	46787280	46787280	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:46787280T>C	uc010jzh.1	+	7	437	c.395T>C	c.(394-396)GTT>GCT	p.V132A	MEP1A_uc011dwg.1_5'UTR|MEP1A_uc011dwh.1_Missense_Mutation_p.V160A|MEP1A_uc011dwi.1_Missense_Mutation_p.V32A	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	132	Extracellular (Potential).|Metalloprotease.				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			TGGTCTGAGGTTGGTGACCAA	0.428													7	6					0	0	1	0	0
MEP1A	4224	broad.mit.edu	37	6	46800960	46800960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:46800960C>T	uc010jzh.1	+	11	1336	c.1294C>T	c.(1294-1296)CCC>TCC	p.P432S	MEP1A_uc011dwg.1_Missense_Mutation_p.P154S|MEP1A_uc011dwh.1_Missense_Mutation_p.P460S|MEP1A_uc011dwi.1_Missense_Mutation_p.P332S	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	432	Extracellular (Potential).|MAM.				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			AACCCCCTGCCCCACAGGGGT	0.517													4	52					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46826469	46826469	+	Silent	SNP	G	A	A	rs151037028		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:46826469G>A	uc003oyo.3	-	17	3460	c.3171C>T	c.(3169-3171)ATC>ATT	p.I1057I	GPR116_uc011dwj.1_Silent_p.I612I|GPR116_uc011dwk.1_Silent_p.I486I|GPR116_uc003oyp.3_Silent_p.I915I|GPR116_uc003oyq.3_Silent_p.I1057I|GPR116_uc010jzi.1_Silent_p.I729I	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1057	Helical; Name=2; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity	p.I1057I(1)		central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GGGAGGCAGCGATATTCACTA	0.537													5	50					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46834690	46834690	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:46834690G>A	uc003oyo.3	-	13	2095	c.1806C>T	c.(1804-1806)TTC>TTT	p.F602F	GPR116_uc011dwj.1_Silent_p.F157F|GPR116_uc011dwk.1_Silent_p.F31F|GPR116_uc003oyp.3_Silent_p.F460F|GPR116_uc003oyq.3_Silent_p.F602F|GPR116_uc010jzi.1_Silent_p.F274F	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	602	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			AACCCGTATGGAAAGTAACTT	0.403													4	51					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46847694	46847694	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:46847694G>A	uc003oyo.3	-	9	1186	c.897C>T	c.(895-897)TCC>TCT	p.S299S	GPR116_uc003oyp.3_Intron|GPR116_uc003oyq.3_Silent_p.S299S|GPR116_uc010jzi.1_5'UTR|GPR116_uc003oyr.2_Silent_p.S299S	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	299	Ig-like 1.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			ACACATTGGAGGACAAAACTT	0.428													5	15					0	0	1	0	0
GPR110	266977	broad.mit.edu	37	6	46996740	46996740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:46996740C>T	uc003oyt.2	-	2	257	c.58G>A	c.(58-60)GGC>AGC	p.G20S	GPR110_uc011dwl.1_5'UTR|GPR110_uc003oyu.1_Missense_Mutation_p.G20S	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	20	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						CCCAGGAAGCCACCGTGGCCG	0.512													5	27					0	0	1	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47251796	47251796	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:47251796G>A	uc003oyv.2	-	3	1554	c.1121C>T	c.(1120-1122)TCG>TTG	p.S374L		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	374	Cytoplasmic (Potential).				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			CAGAGTCCTCGAGCTTTTCCG	0.517													11	66					0	0	1	0	0
RHAG	6005	broad.mit.edu	37	6	49586933	49586933	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:49586933G>A	uc003ozk.3	-	2	362	c.300C>T	c.(298-300)ATC>ATT	p.I100I	RHAG_uc010jzl.2_Silent_p.I100I|RHAG_uc010jzm.2_Silent_p.I100I	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	100	Helical; (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					GGCTTTGCAGGATTCCCTGTA	0.358													4	54					0	0	1	0	0
PGK2	5232	broad.mit.edu	37	6	49754727	49754727	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:49754727T>C	uc003ozu.2	-	1	281	c.174A>G	c.(172-174)GTA>GTG	p.V58V		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	58					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					TCATAAGAACTACTGCCTTGG	0.478													5	29					0	0	1	0	0
TFAP2B	7021	broad.mit.edu	37	6	50807923	50807923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:50807923C>T	uc003pag.2	+	6	1161	c.995C>T	c.(994-996)CCC>CTC	p.P332L		NM_003221	NP_003212	Q92481	AP2B_HUMAN	transcription factor AP-2 beta	332					nervous system development|positive regulation of transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0	Lung NSC(77;0.156)					ACGGAGTTTCCCGCCAAAGCC	0.483													6	142					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51613141	51613141	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:51613141G>A	uc003pah.1	-	58	9549	c.9273C>T	c.(9271-9273)CTC>CTT	p.L3091L	PKHD1_uc010jzn.1_Silent_p.L1074L|PKHD1_uc003pai.2_Silent_p.L3091L	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3091	Extracellular (Potential).|PbH1 9.				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CGTTGCCATGGAGGTTGATGT	0.502													5	39					0	0	1	0	0
IL17F	112744	broad.mit.edu	37	6	52103617	52103617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:52103617C>T	uc003pam.1	-	2	236	c.165G>A	c.(163-165)ATG>ATA	p.M55I	IL17F_uc003pal.1_Missense_Mutation_p.M1I	NM_052872	NP_443104	Q96PD4	IL17F_HUMAN	interleukin 17F precursor	55					cartilage development|inflammatory response|lymphotoxin A biosynthetic process|negative regulation of angiogenesis|proteoglycan metabolic process|regulation of granulocyte macrophage colony-stimulating factor biosynthetic process|regulation of interleukin-2 biosynthetic process|regulation of interleukin-6 biosynthetic process|regulation of interleukin-8 biosynthetic process|regulation of transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|cytokine binding|protein homodimerization activity			ovary(1)	1	Lung NSC(77;0.116)					TGTCAAGCTTCATACTACCTC	0.502													5	44					0	0	1	0	0
GSTA1	2938	broad.mit.edu	37	6	52657764	52657764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:52657764C>T	uc003paz.2	-	6	548	c.436G>A	c.(436-438)GAC>AAC	p.D146N		NM_145740	NP_665683	P08263	GSTA1_HUMAN	glutathione S-transferase alpha 1	146	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Amsacrine(DB00276)|Busulfan(DB01008)|Glutathione(DB00143)	ACAAGGTAGTCTTGTCCATGG	0.532													10	66					0	0	1	0	0
GSTA5	221357	broad.mit.edu	37	6	52696664	52696664	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:52696664C>T	uc003pba.1	-	7	721	c.651G>A	c.(649-651)AGG>AGA	p.R217R		NM_153699	NP_714543	Q7RTV2	GSTA5_HUMAN	glutathione S-transferase alpha 5	217					glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.0912)				Glutathione(DB00143)	TGAAAATCTTCCTTGCTTCTT	0.438													4	64					0	0	1	0	0
GSTA5	221357	broad.mit.edu	37	6	52701058	52701058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:52701058C>T	uc003pba.1	-	4	318	c.248G>A	c.(247-249)GGG>GAG	p.G83E		NM_153699	NP_714543	Q7RTV2	GSTA5_HUMAN	glutathione S-transferase alpha 5	83	GST N-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.0912)				Glutathione(DB00143)	CATGTCTTTCCCATAAAGGTT	0.448													5	107					0	0	1	0	0
ICK	22858	broad.mit.edu	37	6	52874275	52874275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:52874275G>A	uc003pbh.2	-	13	2073	c.1583C>T	c.(1582-1584)TCT>TTT	p.S528F	ICK_uc003pbi.2_Missense_Mutation_p.S528F	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	528					intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					TGTCCCTGAAGATTTTCCAGA	0.353													4	34					0	0	1	0	0
KLHL31	401265	broad.mit.edu	37	6	53519866	53519866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:53519866C>T	uc003pcb.3	-	2	346	c.205G>A	c.(205-207)GAG>AAG	p.E69K		NM_001003760	NP_001003760	Q9H511	KLH31_HUMAN	kelch repeat and BTB (POZ) domain containing 1	69					regulation of transcription, DNA-dependent|transcription, DNA-dependent					ovary(1)	1	Lung NSC(77;0.0158)					AGGAAGTTCTCCTGCCGCATT	0.428													5	45					0	0	1	0	0
C6orf142	90523	broad.mit.edu	37	6	53989592	53989592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:53989592G>A	uc003pcg.3	+	3	654	c.541G>A	c.(541-543)GGG>AGG	p.G181R	C6orf142_uc003pcf.2_Missense_Mutation_p.G181R|C6orf142_uc003pch.3_Missense_Mutation_p.G119R|C6orf142_uc011dwz.1_Missense_Mutation_p.G140R|C6orf142_uc011dxa.1_Missense_Mutation_p.G192R	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	181						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					CAAAACACAGGGGACTGATCT	0.552													3	27					0	0	1	0	0
DST	667	broad.mit.edu	37	6	56342222	56342222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:56342222G>A	uc003pdf.2	-	85	15267	c.15239C>T	c.(15238-15240)ACC>ATC	p.T5080I	DST_uc003pcz.3_Missense_Mutation_p.T4902I|DST_uc011dxj.1_Missense_Mutation_p.T4931I|DST_uc011dxk.1_Missense_Mutation_p.T4942I|DST_uc003pcy.3_Missense_Mutation_p.T4576I	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	6988	Spectrin 20.				cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			AGCCAAAACGGTGTCGCCCAT	0.453													7	68					0	0	1	0	0
LGSN	51557	broad.mit.edu	37	6	63990302	63990302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:63990302C>T	uc003peh.2	-	4	1188	c.1154G>A	c.(1153-1155)GGA>GAA	p.G385E	LGSN_uc003pei.2_3'UTR	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	385					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	GTCATTGTATCCCCATGTTGT	0.463													8	72					0	0	1	0	0
RIMS1	22999	broad.mit.edu	37	6	72892138	72892138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:72892138G>A	uc003pga.2	+	6	1041	c.964G>A	c.(964-966)GGG>AGG	p.G322R	RIMS1_uc011dyb.1_5'UTR|RIMS1_uc003pgc.2_5'UTR|RIMS1_uc003pgb.3_5'UTR	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	322					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				GCTTGAGAAAGGGCGATCACA	0.577													3	16					0	0	1	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904392	73904392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:73904392C>T	uc003pgk.2	+	14	2401	c.2054C>T	c.(2053-2055)TCG>TTG	p.S685L	KCNQ5_uc011dyh.1_Missense_Mutation_p.S704L|KCNQ5_uc011dyi.1_Missense_Mutation_p.S695L|KCNQ5_uc010kat.2_Missense_Mutation_p.S676L|KCNQ5_uc011dyj.1_Missense_Mutation_p.S575L|KCNQ5_uc011dyk.1_Missense_Mutation_p.S435L	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	685					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		GCCAACATCTCGAGAGGCCTG	0.488													8	78					0	0	1	0	0
DDX43	55510	broad.mit.edu	37	6	74104738	74104738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:74104738G>A	uc003pgw.2	+	1	454	c.110G>A	c.(109-111)CGA>CAA	p.R37Q	OOEP_uc003pgv.3_5'UTR|DDX43_uc011dyn.1_RNA	NM_018665	NP_061135	Q9NXZ2	DDX43_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	37						intracellular	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4						GAGTTGAATCGAACAGGTCCT	0.657													8	100					0	0	1	0	0
SLC17A5	26503	broad.mit.edu	37	6	74351598	74351598	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:74351598G>A	uc003phn.3	-	3	469	c.341C>T	c.(340-342)TCC>TTC	p.S114F	SLC17A5_uc010kay.2_RNA|SLC17A5_uc011dyo.1_Silent_p.F12F	NM_012434	NP_036566	Q9NRA2	S17A5_HUMAN	sialin	114	Helical; (Potential).				anion transport	integral to plasma membrane|lysosomal membrane|membrane fraction	sialic acid:hydrogen symporter activity			skin(5)|central_nervous_system(1)	6						ATAAAAAAAGGAACCGAGAAT	0.418													7	91					0	0	1	0	0
COL12A1	1303	broad.mit.edu	37	6	75887433	75887433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:75887433C>T	uc003phs.2	-	12	2549	c.2383G>A	c.(2383-2385)GAA>AAA	p.E795K	COL12A1_uc003pht.2_Intron|COL12A1_uc003phu.1_Missense_Mutation_p.E453K	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	795	Fibronectin type-III 4.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						GAGAAATATTCAGGAATTACA	0.433													9	117					0	0	1	0	0
COL12A1	1303	broad.mit.edu	37	6	75893709	75893709	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:75893709C>T	uc003phs.2	-	9	1315	c.1149G>A	c.(1147-1149)GGG>GGA	p.G383G	COL12A1_uc003pht.2_Intron|COL12A1_uc003phu.1_Silent_p.G41G	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	383	Fibronectin type-III 2.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TTGTCTGAGGCCCCACACTCA	0.507													6	29					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76023657	76023657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:76023657C>T	uc003pia.2	-	5	2264	c.1891G>A	c.(1891-1893)GAA>AAA	p.E631K	FILIP1_uc003phy.1_Missense_Mutation_p.E631K|FILIP1_uc003phz.2_Missense_Mutation_p.E532K|FILIP1_uc010kbe.2_Missense_Mutation_p.E634K|FILIP1_uc003pib.1_Missense_Mutation_p.E383K	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	631	Potential.									skin(3)|ovary(1)	4						AGTGTTAGTTCCTTAATCTTA	0.423													12	99					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76024113	76024113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:76024113C>T	uc003pia.2	-	5	1808	c.1435G>A	c.(1435-1437)GAA>AAA	p.E479K	FILIP1_uc003phy.1_Missense_Mutation_p.E479K|FILIP1_uc003phz.2_Missense_Mutation_p.E380K|FILIP1_uc010kbe.2_Missense_Mutation_p.E482K|FILIP1_uc003pib.1_Missense_Mutation_p.E231K	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	479	Potential.									skin(3)|ovary(1)	4						CATTCCAATTCTTTAACTCGA	0.373													4	38					0	0	1	0	0
FILIP1	27145	broad.mit.edu	37	6	76063328	76063328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:76063328C>T	uc003pia.2	-	4	929	c.556G>A	c.(556-558)GAG>AAG	p.E186K	FILIP1_uc003phy.1_Missense_Mutation_p.E186K|FILIP1_uc003phz.2_Missense_Mutation_p.E87K|FILIP1_uc010kbe.2_Missense_Mutation_p.E189K	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	186										skin(3)|ovary(1)	4						TTATGCTTCTCGTTCTCTAAC	0.517													11	88					0	0	1	0	0
MYO6	4646	broad.mit.edu	37	6	76566926	76566926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:76566926G>A	uc003pih.1	+	13	1615	c.1336G>A	c.(1336-1338)GAA>AAA	p.E446K	MYO6_uc003pig.1_Missense_Mutation_p.E446K|MYO6_uc003pii.1_Missense_Mutation_p.E446K	NM_004999	NP_004990	Q9UM54	MYO6_HUMAN	myosin VI	446	Myosin head-like.				actin filament-based movement|DNA damage response, signal transduction by p53 class mediator|endocytosis|intracellular protein transport|positive regulation of transcription from RNA polymerase II promoter|regulation of secretion|sensory perception of sound|synaptic transmission	cell cortex|clathrin coated vesicle membrane|coated pit|cytosol|DNA-directed RNA polymerase II, holoenzyme|filamentous actin|Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|ruffle membrane|unconventional myosin complex	actin filament binding|ADP binding|ATP binding|calmodulin binding|minus-end directed microfilament motor activity|protein binding			kidney(1)|pancreas(1)	2		all_hematologic(105;0.189)		BRCA - Breast invasive adenocarcinoma(397;0.223)		TTTTCCTTTTGAAACATCATC	0.348													9	43					0	0	1	0	0
HTR1B	3351	broad.mit.edu	37	6	78172485	78172485	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:78172485G>A	uc003pil.1	-	1	636	c.636C>T	c.(634-636)TCC>TCT	p.S212S		NM_000863	NP_000854	P28222	5HT1B_HUMAN	5-hydroxytryptamine (serotonin) receptor 1B	212	Helical; Name=5; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cAMP biosynthetic process|synaptic transmission	integral to plasma membrane	protein binding|serotonin receptor activity				0		all_cancers(76;0.0867)|Acute lymphoblastic leukemia(125;0.00119)|all_hematologic(105;0.0332)		BRCA - Breast invasive adenocarcinoma(397;0.205)	Almotriptan(DB00918)|Dexfenfluramine(DB01191)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Pindolol(DB00960)|Propranolol(DB00571)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Venlafaxine(DB00285)|Zolmitriptan(DB00315)	CACCCACCGTGGAGTAGACCG	0.587													8	24					0	0	1	0	0
ELOVL4	6785	broad.mit.edu	37	6	80636063	80636063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:80636063G>A	uc003pja.3	-	2	455	c.136C>T	c.(136-138)CCT>TCT	p.P46S	ELOVL4_uc011dyt.1_Intron	NM_022726	NP_073563	Q9GZR5	ELOV4_HUMAN	elongation of very long chain fatty acids-like	46	Helical; (Potential).				fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	G-protein coupled photoreceptor activity|protein binding|transferase activity, transferring acyl groups other than amino-acyl groups			ovary(1)|skin(1)	2		all_cancers(76;1.83e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.011)		BRCA - Breast invasive adenocarcinoma(397;0.0168)	Alpha-Linolenic Acid(DB00132)	GTAGGCCAAGGAGACTGCATC	0.378													5	11					0	0	1	0	0
NT5E	4907	broad.mit.edu	37	6	86203648	86203648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:86203648G>A	uc003pko.3	+	9	2207	c.1651G>A	c.(1651-1653)GGA>AGA	p.G551R	NT5E_uc010kbr.2_Missense_Mutation_p.G501R	NM_002526	NP_002517	P21589	5NTD_HUMAN	5' nucleotidase, ecto precursor	551					DNA metabolic process|purine base metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	anchored to membrane|cytoplasm|membrane fraction|plasma membrane	5'-nucleotidase activity|nucleotide binding			ovary(3)|central_nervous_system(1)	4		all_cancers(76;0.000215)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0427)		BRCA - Breast invasive adenocarcinoma(108;0.0417)	Pentoxifylline(DB00806)	GTTTTCCACAGGAAGTCACTG	0.358													4	25					0	0	1	0	0
C6orf165	154313	broad.mit.edu	37	6	88127940	88127940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:88127940C>T	uc003plv.2	+	7	738	c.646C>T	c.(646-648)CAT>TAT	p.H216Y	C6orf165_uc003plw.2_Missense_Mutation_p.H28Y|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Missense_Mutation_p.H216Y	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	216										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		AGCTGTTCTCCATGTAGCAAT	0.448													4	33					0	0	1	0	0
RARS2	57038	broad.mit.edu	37	6	88240513	88240513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:88240513G>A	uc003pme.2	-	9	820	c.760C>T	c.(760-762)CGG>TGG	p.R254W	RARS2_uc003pmb.2_Missense_Mutation_p.R79W|RARS2_uc003pmc.2_Missense_Mutation_p.R79W|RARS2_uc003pmd.2_5'UTR|RARS2_uc003pmf.2_RNA	NM_020320	NP_064716	Q5T160	SYRM_HUMAN	arginyl-tRNA synthetase 2, mitochondrial	254					arginyl-tRNA aminoacylation	mitochondrial matrix	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|central_nervous_system(1)	3		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0456)		TTGTAAACCCGAATGTACTCT	0.473													5	35					0	0	1	0	0
PM20D2	135293	broad.mit.edu	37	6	89868145	89868145	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:89868145C>T	uc003pmz.2	+	5	1109	c.1014C>T	c.(1012-1014)TTC>TTT	p.F338F		NM_001010853	NP_001010853	Q8IYS1	P20D2_HUMAN	aminoacylase 1-like 2	338							hydrolase activity				0		all_cancers(76;9.47e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;0.000114)		BRCA - Breast invasive adenocarcinoma(108;0.00813)		GAATAGAGTTCATTTCAGAAG	0.333													6	42					0	0	1	0	0
GABRR1	2569	broad.mit.edu	37	6	89910949	89910949	+	Missense_Mutation	SNP	G	A	A	rs143197057	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:89910949G>A	uc003pna.2	-	3	664	c.209C>T	c.(208-210)TCG>TTG	p.S70L	GABRR1_uc011dzv.1_Missense_Mutation_p.S47L	NM_002042	NP_002033	P24046	GBRR1_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 1	70	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			pancreas(1)	1		all_cancers(76;9.49e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.46e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;0.000114)		BRCA - Breast invasive adenocarcinoma(108;0.00917)	Picrotoxin(DB00466)	TGTCAGAGGCGATTTGGTGAT	0.478													6	85					0	0	1	0	0
GABRR2	2570	broad.mit.edu	37	6	89978948	89978948	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:89978948G>A	uc003pnb.2	-	4	377	c.369C>T	c.(367-369)TTC>TTT	p.F123F	GABRR2_uc011dzx.1_5'UTR	NM_002043	NP_002034	P28476	GBRR2_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 2	123	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0		all_cancers(76;1.67e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.77e-07)|all_epithelial(107;2.51e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0158)		GGGTCATAGTGAAGTCCTGTG	0.517													7	73					0	0	1	0	0
BACH2	60468	broad.mit.edu	37	6	90648040	90648040	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:90648040G>A	uc011eab.1	-	8	2675	c.1866C>T	c.(1864-1866)ATC>ATT	p.I622I	BACH2_uc003pnw.2_Silent_p.I622I	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	622						nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		GAAGATCTGTGATTTGATCTA	0.388													5	37					0	0	1	0	0
FHL5	9457	broad.mit.edu	37	6	97052718	97052718	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:97052718G>A	uc003pos.1	+	4	657	c.252G>A	c.(250-252)AAG>AAA	p.K84K	FHL5_uc003pot.1_Silent_p.K84K	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator	84	LIM zinc-binding 1.					nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		TTGCTGCCAAGGATGAGCGCC	0.517													4	35					0	0	1	0	0
C6orf167	253714	broad.mit.edu	37	6	97679323	97679323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:97679323G>A	uc003ppb.2	-	13	1774	c.1508C>T	c.(1507-1509)CCT>CTT	p.P503L	C6orf167_uc011eaf.1_Missense_Mutation_p.P463L|C6orf167_uc010kcn.1_Missense_Mutation_p.P277L	NM_198468	NP_940870	Q6ZRQ5	MMS22_HUMAN	hypothetical protein LOC253714	503					double-strand break repair via homologous recombination|replication fork processing	nuclear replication fork	protein binding				0		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.148)|Colorectal(196;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.0457)		TTGTTTCCAAGGATGAGGGCC	0.343													3	24					0	0	1	0	0
C6orf168	84553	broad.mit.edu	37	6	99729201	99729201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:99729201G>A	uc003ppj.3	-	6	1352	c.1069C>T	c.(1069-1071)CCG>TCG	p.P357S	C6orf168_uc003ppi.3_Missense_Mutation_p.P77S	NM_032511	NP_115900	Q5TGI0	CF168_HUMAN	hypothetical protein LOC84553	357										ovary(2)|central_nervous_system(1)	3		all_cancers(76;1.63e-06)|Acute lymphoblastic leukemia(125;5.12e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00898)|Colorectal(196;0.0699)|Lung NSC(302;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.073)		TCCAGCAGCGGGGTGTGGGTT	0.473													7	21					0	0	1	0	0
SIM1	6492	broad.mit.edu	37	6	100838860	100838860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:100838860C>T	uc003pqj.3	-	11	1885	c.1678G>A	c.(1678-1680)GAA>AAA	p.E560K	SIM1_uc010kcu.2_Missense_Mutation_p.E560K	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	560	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		TTGCTGGGTTCATGTGGGCTA	0.463													8	40					0	0	1	0	0
SIM1	6492	broad.mit.edu	37	6	100838890	100838890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:100838890G>A	uc003pqj.3	-	11	1855	c.1648C>T	c.(1648-1650)CGT>TGT	p.R550C	SIM1_uc010kcu.2_Missense_Mutation_p.R550C	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	550	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		TGCTCAGTACGATATCGGTCA	0.423													4	50					0	0	1	0	0
AIM1	202	broad.mit.edu	37	6	106969055	106969055	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:106969055G>A	uc003prh.2	+	2	3235	c.2748G>A	c.(2746-2748)TTG>TTA	p.L916L		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	916							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		ACTCCAGTTTGAAAAGTCCAA	0.423													4	58					0	0	1	0	0
QRSL1	55278	broad.mit.edu	37	6	107102707	107102707	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:107102707C>T	uc003prm.2	+	8	1068	c.952C>T	c.(952-954)CCT>TCT	p.P318S		NM_018292	NP_060762	Q9H0R6	QRSL1_HUMAN	glutaminyl-tRNA synthase	318					translation		ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor				0	Breast(9;0.0107)|all_epithelial(6;0.14)	all_cancers(87;0.00768)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.248)	Epithelial(6;0.000334)|all cancers(7;0.00157)|BRCA - Breast invasive adenocarcinoma(8;0.00721)|OV - Ovarian serous cystadenocarcinoma(5;0.0152)	BRCA - Breast invasive adenocarcinoma(108;0.118)|all cancers(137;0.167)|Epithelial(106;0.176)		AGTATCCCTTCCTCACACCAG	0.428													12	49					0	0	1	0	0
C6orf203	51250	broad.mit.edu	37	6	107361101	107361101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:107361101C>T	uc003prq.2	+	2	218	c.137C>T	c.(136-138)TCT>TTT	p.S46F	C6orf203_uc011eaj.1_Missense_Mutation_p.S51F|C6orf203_uc010kde.2_Missense_Mutation_p.S46F	NM_016487	NP_057571	Q9P0P8	CF203_HUMAN	hypothetical protein LOC51250 isoform a	46											0	Breast(9;0.00124)|all_epithelial(6;0.0729)	all_cancers(87;0.00461)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|Colorectal(196;0.171)|all_epithelial(87;0.23)	BRCA - Breast invasive adenocarcinoma(8;0.000395)|all cancers(7;0.00065)|Epithelial(6;0.000834)|OV - Ovarian serous cystadenocarcinoma(5;0.244)	BRCA - Breast invasive adenocarcinoma(108;0.117)		TTGTATTTTTCTAGTACCAAG	0.388													7	85					0	0	1	0	0
SOBP	55084	broad.mit.edu	37	6	107955609	107955609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:107955609C>T	uc003prx.2	+	6	2065	c.1561C>T	c.(1561-1563)CCG>TCG	p.P521S		NM_018013	NP_060483	A7XYQ1	SOBP_HUMAN	sine oculis binding protein homolog	521	Pro-rich.						metal ion binding			ovary(1)	1		all_cancers(87;5.26e-06)|Acute lymphoblastic leukemia(125;2.87e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.00193)|Colorectal(196;0.156)		BRCA - Breast invasive adenocarcinoma(108;0.026)|all cancers(137;0.087)|Epithelial(106;0.104)|OV - Ovarian serous cystadenocarcinoma(136;0.154)		GGTGCCGCCCCCGACCCTGCT	0.667													4	9					0	0	1	0	0
MICAL1	64780	broad.mit.edu	37	6	109768430	109768430	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:109768430G>A	uc003ptj.2	-	16	2327	c.2073C>T	c.(2071-2073)GCC>GCT	p.A691A	MICAL1_uc003ptk.2_Silent_p.A691A|MICAL1_uc010kdr.2_Silent_p.A605A|MICAL1_uc011eaq.1_Silent_p.A710A	NM_022765	NP_073602	Q8TDZ2	MICA1_HUMAN	microtubule associated monoxygenase, calponin	691					cytoskeleton organization|signal transduction	cytoplasm|intermediate filament	SH3 domain binding|zinc ion binding			breast(2)|ovary(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0142)|all cancers(137;0.0197)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)|BRCA - Breast invasive adenocarcinoma(108;0.0574)		CCCCAGCACCGGCCTGCGTGG	0.642													5	68					0	0	1	0	0
ZBTB24	9841	broad.mit.edu	37	6	109797389	109797389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:109797389C>T	uc003ptl.1	-	4	1361	c.1193G>A	c.(1192-1194)CGA>CAA	p.R398Q	ZBTB24_uc011ear.1_RNA|ZBTB24_uc010kds.1_Missense_Mutation_p.R342Q|ZBTB24_uc010kdt.1_RNA	NM_014797	NP_055612	O43167	ZBT24_HUMAN	zinc finger and BTB domain containing 24 isoform	398	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0154)|all cancers(137;0.0216)|OV - Ovarian serous cystadenocarcinoma(136;0.0242)|BRCA - Breast invasive adenocarcinoma(108;0.059)		TGTATGAACTCGGTAATGGCT	0.368													6	37					0	0	1	0	0
GPR6	2830	broad.mit.edu	37	6	110300859	110300859	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:110300859C>T	uc011eaw.1	+	2	724	c.544C>T	c.(544-546)CTG>TTG	p.L182L	GPR6_uc011eav.1_Silent_p.L197L|GPR6_uc003ptu.2_Silent_p.L182L	NM_005284	NP_005275	P46095	GPR6_HUMAN	G protein-coupled receptor 6	182	Cytoplasmic (Potential).					integral to plasma membrane					0		all_cancers(87;1.64e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;2.83e-05)|all_lung(197;0.00016)|Lung NSC(302;0.000318)|Colorectal(196;0.0488)		BRCA - Breast invasive adenocarcinoma(108;8.01e-05)|Epithelial(106;8.76e-05)|all cancers(137;0.000197)|OV - Ovarian serous cystadenocarcinoma(136;0.0307)		GCGCCGGACCCTGTTGGGCGT	0.677													8	34					0	0	1	0	0
SLC22A16	85413	broad.mit.edu	37	6	110746092	110746092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:110746092G>A	uc003puf.2	-	8	1785	c.1718C>T	c.(1717-1719)TCT>TTT	p.S573F	SLC22A16_uc003pue.2_Missense_Mutation_p.S554F	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	573					acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		ACCAAGACCAGAATCCCTGGG	0.408													6	76					0	0	1	0	0
SLC22A16	85413	broad.mit.edu	37	6	110757099	110757099	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:110757099G>A	uc003puf.2	-	6	1444	c.1377C>T	c.(1375-1377)GGC>GGT	p.G459G	SLC22A16_uc003pue.2_Silent_p.G440G	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	459	Helical; (Potential).				acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		GATAAATGAGGCCAAATGCTG	0.363													6	42					0	0	1	0	0
SLC16A10	117247	broad.mit.edu	37	6	111494003	111494003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:111494003C>T	uc003pus.2	+	2	624	c.449C>T	c.(448-450)GCT>GTT	p.A150V	SLC16A10_uc003pur.3_Missense_Mutation_p.A150V	NM_018593	NP_061063	Q8TF71	MOT10_HUMAN	solute carrier family 16, member 10	150	Helical; (Potential).				aromatic amino acid transport|cellular nitrogen compound metabolic process|ion transport	basolateral plasma membrane|integral to membrane	amino acid transmembrane transporter activity				0		all_cancers(87;0.00172)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0313)|Colorectal(196;0.0466)		OV - Ovarian serous cystadenocarcinoma(136;0.0703)|Epithelial(106;0.12)|all cancers(137;0.132)		GTGGGTGCTGCTGTTGGATTT	0.413													7	80					0	0	1	0	0
LAMA4	3910	broad.mit.edu	37	6	112437071	112437071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:112437071C>T	uc003pvu.2	-	36	5416	c.5107G>A	c.(5107-5109)GGA>AGA	p.G1703R	LAMA4_uc003pvv.2_Missense_Mutation_p.G1696R|LAMA4_uc003pvt.2_Missense_Mutation_p.G1696R	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	1703	Laminin G-like 5.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		ACTACCTGTCCATTTTTCATG	0.398													3	18					0	0	1	0	0
DSE	29940	broad.mit.edu	37	6	116747754	116747754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:116747754C>T	uc003pws.2	+	3	628	c.434C>T	c.(433-435)CCT>CTT	p.P145L	DSE_uc011ebf.1_Missense_Mutation_p.P145L|DSE_uc011ebg.1_Missense_Mutation_p.P164L|DSE_uc003pwt.2_Missense_Mutation_p.P145L	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	145					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		AAAGATGCTCCTTGGGATGAG	0.433													6	62					0	0	1	0	0
DSE	29940	broad.mit.edu	37	6	116757919	116757919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:116757919G>A	uc003pws.2	+	6	2482	c.2288G>A	c.(2287-2289)CGA>CAA	p.R763Q	DSE_uc011ebg.1_Missense_Mutation_p.R782Q|DSE_uc003pwt.2_Missense_Mutation_p.R763Q|DSE_uc003pwu.2_Missense_Mutation_p.R430Q	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	763					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		ATACTGTCCCGAGTCCGGAAC	0.473													7	25					0	0	1	0	0
FAM26F	441168	broad.mit.edu	37	6	116784811	116784811	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:116784811G>A	uc003pwv.2	+	3	986	c.891G>A	c.(889-891)GTG>GTA	p.V297V		NM_001010919	NP_001010919	Q5R3K3	FA26F_HUMAN	hypothetical protein LOC441168	297						integral to membrane					0				GBM - Glioblastoma multiforme(226;0.0402)|all cancers(137;0.0627)|OV - Ovarian serous cystadenocarcinoma(136;0.0655)|Epithelial(106;0.231)		GAGATACGGTGATTCCTGTTC	0.373													17	152					0	0	1	0	0
RSPH4A	345895	broad.mit.edu	37	6	116938159	116938159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:116938159C>T	uc003pxe.2	+	1	518	c.373C>T	c.(373-375)CCT>TCT	p.P125S	RSPH4A_uc010kee.2_Missense_Mutation_p.P125S	NM_001010892	NP_001010892	Q5TD94	RSH4A_HUMAN	radial spoke head 4 homolog A isoform 1	125					cilium axoneme assembly|cilium movement	cytoplasm|cytoskeleton|radial spoke					0						GACACCTTATCCTGATCCTTT	0.517									Kartagener_syndrome				8	65					0	0	1	0	0
MAN1A1	4121	broad.mit.edu	37	6	119669722	119669722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:119669722C>T	uc003pym.1	-	2	951	c.509G>A	c.(508-510)GGC>GAC	p.G170D	MAN1A1_uc010kei.1_Missense_Mutation_p.G170D	NM_005907	NP_005898	P33908	MA1A1_HUMAN	mannosidase, alpha, class 1A, member 1	170	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_epithelial(87;0.173)		OV - Ovarian serous cystadenocarcinoma(136;0.0612)|GBM - Glioblastoma multiforme(226;0.0702)|all cancers(137;0.115)		CGGGGGCAGGCCTCTGAACGG	0.632													4	75					0	0	1	0	0
GJA1	2697	broad.mit.edu	37	6	121768829	121768829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:121768829C>T	uc003pyr.2	+	2	1086	c.836C>T	c.(835-837)TCG>TTG	p.S279L	GJA1_uc011ebo.1_Missense_Mutation_p.S180L|GJA1_uc011ebp.1_Missense_Mutation_p.S67L	NM_000165	NP_000156	P17302	CXA1_HUMAN	connexin 43	279	Cytoplasmic (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|heart development|muscle contraction|positive regulation of I-kappaB kinase/NF-kappaB cascade	connexon complex|Golgi-associated vesicle membrane|integral to plasma membrane|membrane raft	ion transmembrane transporter activity|signal transducer activity			ovary(2)	2				GBM - Glioblastoma multiforme(226;0.00252)	Carvedilol(DB01136)	GCTCCCCTCTCGCCTATGTCT	0.507													6	71					0	0	1	0	0
C6orf174	387104	broad.mit.edu	37	6	127796870	127796870	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:127796870C>T	uc003qbd.2	-	6	3166	c.2301G>A	c.(2299-2301)CGG>CGA	p.R767R	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	767						integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		GGTGCGGAGGCCGCGAGTCGT	0.721													5	59					0	0	1	0	0
C6orf174	387104	broad.mit.edu	37	6	127797031	127797031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:127797031C>T	uc003qbd.2	-	6	3005	c.2140G>A	c.(2140-2142)GAG>AAG	p.E714K	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	714	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		CCGCTGAGCTCGTTGATCTGC	0.657													16	96					0	0	1	0	0
THEMIS	387357	broad.mit.edu	37	6	128150661	128150661	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:128150661C>T	uc003qbi.2	-	4	988	c.669G>A	c.(667-669)CTG>CTA	p.L223L	THEMIS_uc010kfa.2_Silent_p.L126L|THEMIS_uc011ebt.1_Silent_p.L223L|THEMIS_uc010kfb.2_Silent_p.L188L	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	223	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						GCTTGAGAATCAGGGTACCAT	0.373													5	48					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129714239	129714239	+	Missense_Mutation	SNP	C	T	T	rs145126760		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:129714239C>T	uc003qbn.2	+	37	5389	c.5284C>T	c.(5284-5286)CGG>TGG	p.R1762W	LAMA2_uc003qbo.2_Missense_Mutation_p.R1762W	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1762	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TGGAGAGTCCCGGGGGGAAAA	0.468													4	9					0	0	1	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762860	130762860	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:130762860G>A	uc003qca.2	+	3	2164	c.1293G>A	c.(1291-1293)ATG>ATA	p.M431I	TMEM200A_uc010kfh.2_Missense_Mutation_p.M431I|TMEM200A_uc010kfi.2_Missense_Mutation_p.M431I|TMEM200A_uc003qcb.2_Missense_Mutation_p.M431I	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	431	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		AGGGATATATGAAACTAGAGA	0.453													4	11					0	0	1	0	0
ENPP3	5169	broad.mit.edu	37	6	132004242	132004242	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:132004242G>A	uc003qcu.3	+	13	1407	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K	ENPP3_uc010kfo.1_RNA|ENPP3_uc010kfp.1_RNA|ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Missense_Mutation_p.E354K	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	354	Extracellular (Potential).|Phosphodiesterase.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		GATGTTGATGGAAGGCCTGAA	0.358													4	32					0	0	1	0	0
VNN2	8875	broad.mit.edu	37	6	133072429	133072429	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:133072429A>T	uc003qdt.2	-	5	1066	c.1055T>A	c.(1054-1056)TTT>TAT	p.F352Y	VNN2_uc003qds.2_Missense_Mutation_p.F61Y|VNN2_uc010kgb.2_Intron|VNN2_uc003qdv.2_Missense_Mutation_p.F299Y	NM_004665	NP_004656	O95498	VNN2_HUMAN	vanin 2 isoform 1 precursor	352					cellular component movement|pantothenate metabolic process	anchored to membrane|plasma membrane	pantetheine hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(155;0.00237)|GBM - Glioblastoma multiforme(226;0.0267)		TGCATTTTCAAAAAGTTCTGT	0.388													6	39					0	0	1	0	0
TCF21	6943	broad.mit.edu	37	6	134210883	134210883	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:134210883C>T	uc003qei.3	+	1	624	c.348C>T	c.(346-348)TCC>TCT	p.S116S	uc003qeg.1_5'Flank|TCF21_uc003qej.2_Silent_p.S116S	NM_003206	NP_003197	O43680	TCF21_HUMAN	transcription factor 21	116	Helix-loop-helix motif.				branching involved in ureteric bud morphogenesis|mesoderm development|negative regulation of androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent	nucleus	androgen receptor binding|E-box binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity				0	Colorectal(23;0.221)|Breast(56;0.247)			GBM - Glioblastoma multiforme(68;0.00518)|OV - Ovarian serous cystadenocarcinoma(155;0.00783)		CCAAGCTCTCCAAGCTGGACA	0.632													11	94					0	0	1	0	0
SLC2A12	154091	broad.mit.edu	37	6	134350803	134350803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:134350803C>T	uc003qem.1	-	2	331	c.160G>A	c.(160-162)GTG>ATG	p.V54M		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	54	Helical; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		TCATAACCCACCAGGAGGCCA	0.522													4	31					0	0	1	0	0
MAP3K5	4217	broad.mit.edu	37	6	136934293	136934293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:136934293G>A	uc003qhc.2	-	17	2741	c.2380C>T	c.(2380-2382)CTC>TTC	p.L794F	MAP3K5_uc011edj.1_Missense_Mutation_p.L41F|MAP3K5_uc011edk.1_Missense_Mutation_p.L639F	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	794	Protein kinase.				activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		TTGTCATGGAGATATTTTAAT	0.368													6	22					0	0	1	0	0
IL20RA	53832	broad.mit.edu	37	6	137329866	137329866	+	Silent	SNP	C	T	T	rs147634362		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:137329866C>T	uc003qhj.2	-	5	1027	c.594G>A	c.(592-594)GTG>GTA	p.V198V	IL20RA_uc011edl.1_Silent_p.V149V|IL20RA_uc003qhk.2_Silent_p.V87V|IL20RA_uc003qhi.2_5'UTR	NM_014432	NP_055247	Q9UHF4	I20RA_HUMAN	interleukin 20 receptor, alpha precursor	198	Extracellular (Potential).|Fibronectin type-III 2.					integral to membrane	receptor activity			ovary(2)|skin(2)	4	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000351)|OV - Ovarian serous cystadenocarcinoma(155;0.00459)		TGTGGTTGGTCACACACTGGG	0.542													4	48					0	0	1	0	0
IL20RA	53832	broad.mit.edu	37	6	137332422	137332422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:137332422G>A	uc003qhj.2	-	3	825	c.392C>T	c.(391-393)CCT>CTT	p.P131L	IL20RA_uc011edl.1_Missense_Mutation_p.P82L|IL20RA_uc003qhk.2_Intron|IL20RA_uc010kgy.1_Intron|IL20RA_uc003qhi.2_5'Flank	NM_014432	NP_055247	Q9UHF4	I20RA_HUMAN	interleukin 20 receptor, alpha precursor	131	Extracellular (Potential).|Fibronectin type-III 1.					integral to membrane	receptor activity			ovary(2)|skin(2)	4	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000351)|OV - Ovarian serous cystadenocarcinoma(155;0.00459)		TTCTAAAAAAGGATAGAACCG	0.413													6	39					0	0	1	0	0
KIAA1244	57221	broad.mit.edu	37	6	138576674	138576674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:138576674C>T	uc003qhu.2	+	10	872	c.872C>T	c.(871-873)TCG>TTG	p.S291L		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	291					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		AGCCTGGAGTCGGACTCTGCG	0.582													8	76					0	0	1	0	0
KIAA1244	57221	broad.mit.edu	37	6	138584592	138584592	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:138584592C>T	uc003qhu.2	+	12	1972	c.1972C>T	c.(1972-1974)CTG>TTG	p.L658L		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	658	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		AACTGCCGCCCTGTCTCTAAA	0.607													6	63					0	0	1	0	0
TXLNB	167838	broad.mit.edu	37	6	139564004	139564004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:139564004C>T	uc011eds.1	-	10	1879	c.1714G>A	c.(1714-1716)GAA>AAA	p.E572K		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	572						cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		GAGGGAGGTTCAGCATCACTG	0.597													6	61					0	0	1	0	0
NMBR	4829	broad.mit.edu	37	6	142399932	142399932	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:142399932G>A	uc003qiu.2	-	2	672	c.531C>T	c.(529-531)CCC>CCT	p.P177P		NM_002511	NP_002502	P28336	NMBR_HUMAN	neuromedin B receptor	177	Helical; Name=4; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	cytoplasm|integral to plasma membrane	bombesin receptor activity			central_nervous_system(3)|breast(1)	4	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;9.93e-06)|GBM - Glioblastoma multiforme(68;0.0013)		ACACCGCTTCGGGAACTGCCA	0.517													5	13					0	0	1	0	0
HIVEP2	3097	broad.mit.edu	37	6	143074502	143074502	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:143074502G>A	uc003qjd.2	-	10	7826	c.7083C>T	c.(7081-7083)CCC>CCT	p.P2361P		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	2361					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		CACTTCCCAGGGGGTTCTGGT	0.577													5	31					0	0	1	0	0
HIVEP2	3097	broad.mit.edu	37	6	143092161	143092161	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:143092161G>A	uc003qjd.2	-	5	4458	c.3715C>T	c.(3715-3717)CAG>TAG	p.Q1239*		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1239					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		TAGCTCTTCTGAGGGTGCTGA	0.493													7	99					0	0	1	0	0
HIVEP2	3097	broad.mit.edu	37	6	143093438	143093438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:143093438G>A	uc003qjd.2	-	5	3181	c.2438C>T	c.(2437-2439)TCA>TTA	p.S813L		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	813					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		CCTTTCAAATGAATTGGGTCG	0.498													7	52					0	0	1	0	0
PLAGL1	5325	broad.mit.edu	37	6	144262626	144262626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:144262626G>A	uc003qjv.2	-	3	2593	c.1327C>T	c.(1327-1329)CCT>TCT	p.P443S	PLAGL1_uc003qjx.2_Missense_Mutation_p.P443S|PLAGL1_uc003qjy.2_Missense_Mutation_p.P443S|PLAGL1_uc010khl.2_Missense_Mutation_p.P443S|PLAGL1_uc010khm.2_Missense_Mutation_p.P443S|PLAGL1_uc003qjz.2_Missense_Mutation_p.P443S|PLAGL1_uc003qka.2_Missense_Mutation_p.P443S|PLAGL1_uc003qkb.2_Missense_Mutation_p.P391S|PLAGL1_uc003qkc.2_Missense_Mutation_p.P443S|PLAGL1_uc003qkd.2_Missense_Mutation_p.P391S|PLAGL1_uc003qke.2_Missense_Mutation_p.P443S|PLAGL1_uc003qkf.2_Missense_Mutation_p.P443S|PLAGL1_uc003qkg.2_Missense_Mutation_p.P391S|PLAGL1_uc003qkh.2_Missense_Mutation_p.P443S|PLAGL1_uc003qki.2_Missense_Mutation_p.P391S|PLAGL1_uc003qkj.2_Missense_Mutation_p.P443S|PLAGL1_uc003qkk.2_Missense_Mutation_p.P391S|PLAGL1_uc003qkl.2_Missense_Mutation_p.P391S|PLAGL1_uc003qkm.2_Missense_Mutation_p.P443S|PLAGL1_uc010khn.2_Missense_Mutation_p.P443S|PLAGL1_uc003qkn.2_Missense_Mutation_p.P391S|PLAGL1_uc003qko.2_Missense_Mutation_p.P443S|PLAGL1_uc003qkp.2_Missense_Mutation_p.P391S|PLAGL1_uc003qjw.2_Missense_Mutation_p.P391S	NM_002656	NP_002647	Q9UM63	PLAL1_HUMAN	pleiomorphic adenoma gene-like 1 isoform 1	443					cell cycle arrest|induction of apoptosis|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(155;5.74e-07)|GBM - Glioblastoma multiforme(68;0.0885)		AACACATGAGGGATGGGGGGC	0.527													34	394					0	0	1	0	0
GRM1	2911	broad.mit.edu	37	6	146720092	146720092	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:146720092C>T	uc010khw.1	+	8	2387	c.1917C>T	c.(1915-1917)TTC>TTT	p.F639F	GRM1_uc010khv.1_Silent_p.F639F|GRM1_uc003qll.2_Silent_p.F639F|GRM1_uc011edz.1_Silent_p.F639F|GRM1_uc011eea.1_Silent_p.F639F	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	639	Helical; Name=2; (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	CTGGCATCTTCCTTGGTTATG	0.517													6	110					0	0	1	0	0
STXBP5	134957	broad.mit.edu	37	6	147525724	147525724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:147525724C>T	uc003qlz.2	+	1	217	c.56C>T	c.(55-57)TCG>TTG	p.S19L	uc003qlt.1_RNA|uc003qlu.1_RNA|STXBP5_uc010khz.1_Missense_Mutation_p.S19L|STXBP5_uc003qlx.2_RNA|STXBP5_uc003qly.2_5'Flank	NM_001127715	NP_001121187	Q5T5C0	STXB5_HUMAN	syntaxin binding protein 5 (tomosyn) isoform b	19					exocytosis|positive regulation of exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|nicotinic acetylcholine-gated receptor-channel complex|synaptic vesicle	syntaxin-1 binding				0		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;1.77e-09)|GBM - Glioblastoma multiforme(68;0.0694)		GGCTCGTCCTCGGCGTCGCAG	0.657													4	20					0	0	1	0	0
ULBP3	79465	broad.mit.edu	37	6	150386655	150386655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:150386655C>T	uc003qns.3	-	3	507	c.507G>A	c.(505-507)ATG>ATA	p.M169I	ULBP3_uc011eej.1_Missense_Mutation_p.M44I|ULBP3_uc011eek.1_Missense_Mutation_p.M120I	NM_024518	NP_078794	Q9BZM4	N2DL3_HUMAN	UL16 binding protein 3 precursor	169	MHC class I alpha-2 like.				antigen processing and presentation|immune response|natural killer cell activation	anchored to membrane|MHC class I protein complex	MHC class I receptor activity				0		Ovarian(120;0.12)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.45e-12)		ACTTCTCTTTCATCCGCCTGG	0.517													19	99					0	0	1	0	0
ULBP3	79465	broad.mit.edu	37	6	150387045	150387045	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:150387045G>A	uc003qns.3	-	2	342	c.342C>T	c.(340-342)TTC>TTT	p.F114F	ULBP3_uc011eej.1_5'Flank|ULBP3_uc011eek.1_Silent_p.F65F	NM_024518	NP_078794	Q9BZM4	N2DL3_HUMAN	UL16 binding protein 3 precursor	114	MHC class I alpha-1 like.				antigen processing and presentation|immune response|natural killer cell activation	anchored to membrane|MHC class I protein complex	MHC class I receptor activity				0		Ovarian(120;0.12)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.45e-12)		CACTGGGTGTGAAATCCTCCA	0.542													5	81					0	0	1	0	0
PPP1R14C	81706	broad.mit.edu	37	6	150464463	150464463	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:150464463G>A	uc003qnt.2	+	1	276	c.135G>A	c.(133-135)GAG>GAA	p.E45E		NM_030949	NP_112211	Q8TAE6	PP14C_HUMAN	protein phosphatase 1, regulatory (inhibitor)	45					regulation of phosphorylation	cytoplasm|membrane					0		Ovarian(120;0.0284)	BRCA - Breast invasive adenocarcinoma(37;0.215)	OV - Ovarian serous cystadenocarcinoma(155;9.14e-12)		CCTCCCGGGAGGACTCGGCGC	0.607													8	24					0	0	1	0	0
IYD	389434	broad.mit.edu	37	6	150690264	150690264	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:150690264G>C	uc003qnu.1	+	1	237	c.97G>C	c.(97-99)GAG>CAG	p.E33Q	IYD_uc003qnv.1_Missense_Mutation_p.E33Q|IYD_uc003qnw.1_RNA|IYD_uc003qnx.1_Missense_Mutation_p.E33Q|IYD_uc010kik.1_5'UTR	NM_203395	NP_981932	Q6PHW0	IYD1_HUMAN	iodotyrosine dehalogenase 1 isoform 2	33	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	integral to membrane|plasma membrane				ovary(2)	2		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.215)	OV - Ovarian serous cystadenocarcinoma(155;4.16e-12)		AAAGAAGGGGGAGCCTAGAAC	0.493													6	108					0	0	1	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151151733	151151733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:151151733G>A	uc003qny.1	+	16	1798	c.1486G>A	c.(1486-1488)GGA>AGA	p.G496R	PLEKHG1_uc011eel.1_Missense_Mutation_p.G536R|PLEKHG1_uc011eem.1_Missense_Mutation_p.G555R|PLEKHG1_uc003qnz.2_Missense_Mutation_p.G496R	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	496					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		TAGAGAGGAAGGATCTCCCCA	0.493													4	33					0	0	1	0	0
AKAP12	9590	broad.mit.edu	37	6	151673660	151673660	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:151673660G>A	uc011eep.1	+	4	4374	c.4134G>A	c.(4132-4134)GTG>GTA	p.V1378V	AKAP12_uc003qoe.2_Silent_p.V1378V|AKAP12_uc003qof.2_Silent_p.V1280V|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Silent_p.V1273V	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	1378					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		TCCAGACAGTGAATGTGCCCA	0.498													7	38					0	0	1	0	0
ZBTB2	57621	broad.mit.edu	37	6	151687921	151687921	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:151687921G>A	uc003qoh.2	-	3	415	c.280C>T	c.(280-282)CGA>TGA	p.R94*		NM_020861	NP_065912	Q8N680	ZBTB2_HUMAN	zinc finger and BTB domain containing 2	94					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.63e-11)		TGTTCTAATCGAACCGGGTCG	0.537													8	110					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152529286	152529286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:152529286G>A	uc010kiw.2	-	125	23247	c.22645C>T	c.(22645-22647)CGC>TGC	p.R7549C	SYNE1_uc010kiv.2_Missense_Mutation_p.R2073C|SYNE1_uc003qos.3_Missense_Mutation_p.R2073C|SYNE1_uc003qot.3_Missense_Mutation_p.R7478C|SYNE1_uc003qou.3_Missense_Mutation_p.R7549C|SYNE1_uc003qor.3_Missense_Mutation_p.R449C	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	7549	HAT 11.|Cytoplasmic (Potential).|Spectrin 25.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGGGCCCTGCGAATCACTCCC	0.468										HNSCC(10;0.0054)			4	41					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152720790	152720790	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:152720790G>A	uc010kiw.2	-	48	7800	c.7198C>T	c.(7198-7200)CAG>TAG	p.Q2400*	SYNE1_uc003qot.3_Nonsense_Mutation_p.Q2407*|SYNE1_uc003qou.3_Nonsense_Mutation_p.Q2400*|SYNE1_uc010kjb.1_Nonsense_Mutation_p.Q2383*	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2400	Spectrin 3.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AGGCTGGCCTGGGTTTTGGAG	0.507										HNSCC(10;0.0054)			5	70					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152841653	152841653	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:152841653T>A	uc010kiw.2	-	6	852	c.250A>T	c.(250-252)AAG>TAG	p.K84*	SYNE1_uc003qot.3_Nonsense_Mutation_p.K84*|SYNE1_uc003qou.3_Nonsense_Mutation_p.K84*|SYNE1_uc010kjb.1_Nonsense_Mutation_p.K84*|SYNE1_uc003qpa.1_Nonsense_Mutation_p.K84*	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	84	Actin-binding.|Cytoplasmic (Potential).|CH 1.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGGATTCGCTTCATCCGGCGT	0.398										HNSCC(10;0.0054)			4	22					0	0	1	0	0
VIP	7432	broad.mit.edu	37	6	153077365	153077365	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:153077365G>A	uc003qpe.2	+	5	604	c.432G>A	c.(430-432)AAG>AAA	p.K144K	VIP_uc003qpf.2_Silent_p.K143K|VIP_uc010kjd.2_Silent_p.K143K	NM_003381	NP_003372	P01282	VIP_HUMAN	vasoactive intestinal peptide isoform 1	144					body fluid secretion|G-protein coupled receptor protein signaling pathway|positive regulation of cell proliferation	extracellular region	neuropeptide hormone activity				0		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;4.5e-11)|BRCA - Breast invasive adenocarcinoma(81;0.144)		TGGCTGTAAAGAAATATTTGA	0.383													3	11					0	0	1	0	0
OPRM1	4988	broad.mit.edu	37	6	154412276	154412276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:154412276G>A	uc003qpr.2	+	3	1070	c.833G>A	c.(832-834)CGA>CAA	p.R278Q	OPRM1_uc011efc.1_Missense_Mutation_p.R197Q|OPRM1_uc011efd.1_Missense_Mutation_p.R178Q|OPRM1_uc011efe.1_Missense_Mutation_p.R371Q|OPRM1_uc003qpn.2_Missense_Mutation_p.R278Q|OPRM1_uc003qpo.1_Missense_Mutation_p.R278Q|OPRM1_uc011eff.1_Missense_Mutation_p.R278Q|OPRM1_uc011efg.1_Missense_Mutation_p.R278Q|OPRM1_uc011efh.1_Missense_Mutation_p.R278Q|OPRM1_uc003qpq.1_Missense_Mutation_p.R278Q|OPRM1_uc003qpt.1_Missense_Mutation_p.R278Q|OPRM1_uc011efi.1_Missense_Mutation_p.R278Q|OPRM1_uc003qpp.2_RNA|OPRM1_uc003qps.2_RNA|OPRM1_uc010kjg.2_Missense_Mutation_p.R178Q|OPRM1_uc003qpu.2_Missense_Mutation_p.R178Q	NM_000914	NP_000905	P35372	OPRM_HUMAN	opioid receptor, mu 1 isoform MOR-1	278	Cytoplasmic (Potential).				behavior|negative regulation of cell proliferation|sensory perception	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	mu-opioid receptor activity|protein binding			ovary(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;9.26e-11)|BRCA - Breast invasive adenocarcinoma(81;0.0154)	Alfentanil(DB00802)|Anileridine(DB00913)|Buprenorphine(DB00921)|Butorphanol(DB00611)|Codeine(DB00318)|Dezocine(DB01209)|Diphenoxylate(DB01081)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Levallorphan(DB00504)|Levomethadyl Acetate(DB01227)|Levorphanol(DB00854)|Loperamide(DB00836)|Methadone(DB00333)|Methadyl Acetate(DB01433)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Oxymorphone(DB01192)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Remifentanil(DB00899)|Sufentanil(DB00708)|Tramadol(DB00193)	AGGAATCTTCGAAGGATCACC	0.498													8	39					0	0	1	0	0
OPRM1	4988	broad.mit.edu	37	6	154412470	154412470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:154412470G>A	uc003qpr.2	+	3	1264	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K	OPRM1_uc011efc.1_Missense_Mutation_p.E262K|OPRM1_uc011efd.1_Missense_Mutation_p.E243K|OPRM1_uc011efe.1_Missense_Mutation_p.E436K|OPRM1_uc003qpn.2_Missense_Mutation_p.E343K|OPRM1_uc003qpo.1_Missense_Mutation_p.E343K|OPRM1_uc011eff.1_Missense_Mutation_p.E343K|OPRM1_uc011efg.1_Missense_Mutation_p.E343K|OPRM1_uc011efh.1_Missense_Mutation_p.E343K|OPRM1_uc003qpq.1_Missense_Mutation_p.E343K|OPRM1_uc003qpt.1_Missense_Mutation_p.E343K|OPRM1_uc011efi.1_Missense_Mutation_p.E343K|OPRM1_uc003qpp.2_RNA|OPRM1_uc003qps.2_RNA|OPRM1_uc010kjg.2_Missense_Mutation_p.E243K|OPRM1_uc003qpu.2_Missense_Mutation_p.E243K	NM_000914	NP_000905	P35372	OPRM_HUMAN	opioid receptor, mu 1 isoform MOR-1	343	Cytoplasmic (Potential).				behavior|negative regulation of cell proliferation|sensory perception	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	mu-opioid receptor activity|protein binding			ovary(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;9.26e-11)|BRCA - Breast invasive adenocarcinoma(81;0.0154)	Alfentanil(DB00802)|Anileridine(DB00913)|Buprenorphine(DB00921)|Butorphanol(DB00611)|Codeine(DB00318)|Dezocine(DB01209)|Diphenoxylate(DB01081)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Levallorphan(DB00504)|Levomethadyl Acetate(DB01227)|Levorphanol(DB00854)|Loperamide(DB00836)|Methadone(DB00333)|Methadyl Acetate(DB01433)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Oxymorphone(DB01192)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Remifentanil(DB00899)|Sufentanil(DB00708)|Tramadol(DB00193)	ATTTCTGGATGAAAACTTCAA	0.448													5	28					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155451141	155451141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:155451141G>A	uc003qqb.2	+	6	2057	c.784G>A	c.(784-786)GAG>AAG	p.E262K	TIAM2_uc003qqe.2_Missense_Mutation_p.E262K	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	262					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		AGAGCTGAGCGAGGCTGAGGG	0.617													5	63					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155561736	155561736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:155561736G>A	uc003qqb.2	+	18	4514	c.3241G>A	c.(3241-3243)GAG>AAG	p.E1081K	TIAM2_uc003qqe.2_Missense_Mutation_p.E1081K|TIAM2_uc010kjj.2_Missense_Mutation_p.E614K|TIAM2_uc003qqf.2_Missense_Mutation_p.E457K|TIAM2_uc011efl.1_Missense_Mutation_p.E417K|TIAM2_uc003qqg.2_Missense_Mutation_p.E393K|TIAM2_uc003qqh.2_Missense_Mutation_p.E6K	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	1081					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		AGGACCGCGGGAGAATCAGGA	0.557													6	56					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155561811	155561811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:155561811G>A	uc003qqb.2	+	18	4589	c.3316G>A	c.(3316-3318)GAG>AAG	p.E1106K	TIAM2_uc003qqe.2_Missense_Mutation_p.E1106K|TIAM2_uc010kjj.2_Missense_Mutation_p.E639K|TIAM2_uc003qqf.2_Missense_Mutation_p.E482K|TIAM2_uc011efl.1_Missense_Mutation_p.E442K|TIAM2_uc003qqg.2_Missense_Mutation_p.E418K|TIAM2_uc003qqh.2_Missense_Mutation_p.E31K	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	1106	DH.				apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		AGTCATCCAGGAGCTTGTGGA	0.572													6	60					0	0	1	0	0
NOX3	50508	broad.mit.edu	37	6	155750012	155750012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:155750012C>T	uc003qqm.2	-	9	1164	c.1061G>A	c.(1060-1062)CGG>CAG	p.R354Q		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	354	Extracellular (Potential).|FAD-binding FR-type.						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		TCCTGCTGCCCGGATGTGCAC	0.617													6	60					0	0	1	0	0
SYNJ2	8871	broad.mit.edu	37	6	158492715	158492715	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:158492715C>T	uc003qqx.1	+	15	2097	c.2022C>T	c.(2020-2022)TTC>TTT	p.F674F	SYNJ2_uc003qqw.1_Silent_p.F674F|SYNJ2_uc003qqy.1_Silent_p.F387F|SYNJ2_uc003qqz.1_Silent_p.F291F|SYNJ2_uc003qra.1_Silent_p.F17F	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	674	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		GCTTCCAGTTCCACAGCACCA	0.587													6	73					0	0	1	0	0
SYNJ2	8871	broad.mit.edu	37	6	158509713	158509713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:158509713C>T	uc003qqx.1	+	24	3440	c.3365C>T	c.(3364-3366)TCG>TTG	p.S1122L	SYNJ2_uc003qqw.1_Missense_Mutation_p.S1122L|SYNJ2_uc003qqy.1_Missense_Mutation_p.S835L|SYNJ2_uc003qqz.1_Missense_Mutation_p.S739L|SYNJ2_uc003qra.1_Missense_Mutation_p.S465L|SYNJ2_uc010kjp.1_Missense_Mutation_p.S5L	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	1122	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		GTGAAAAAGTCGGCTTCAGAT	0.522													17	100					0	0	1	0	0
RSPH3	83861	broad.mit.edu	37	6	159420479	159420479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:159420479C>T	uc003qrx.2	-	1	720	c.530G>A	c.(529-531)AGC>AAC	p.S177N	RSPH3_uc010kju.2_Missense_Mutation_p.S177N|RSPH3_uc003qry.1_Missense_Mutation_p.S177N	NM_031924	NP_114130	Q86UC2	RSPH3_HUMAN	radial spoke 3 homolog	177										ovary(1)|skin(1)	2		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;2.36e-16)|BRCA - Breast invasive adenocarcinoma(81;5.92e-06)		CTGCGTCAGGCTGTCCCGGTA	0.677													4	60					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159644573	159644573	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:159644573G>A	uc010kjv.2	+	7	980	c.780G>A	c.(778-780)TTG>TTA	p.L260L	FNDC1_uc010kjw.1_Silent_p.L208L	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	260	Fibronectin type-III 3.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		AGGACGAATTGGATGTACCTG	0.478													6	23					0	0	1	0	0
SLC22A1	6580	broad.mit.edu	37	6	160557581	160557581	+	Silent	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:160557581T>A	uc003qtc.2	+	6	1065	c.960T>A	c.(958-960)CTT>CTA	p.L320L	SLC22A1_uc003qtd.2_Silent_p.L320L	NM_003057	NP_003048	O15245	S22A1_HUMAN	solute carrier family 22 member 1 isoform a	320	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	organic cation transmembrane transporter activity|protein binding				0		Breast(66;0.000776)|Ovarian(120;0.00556)		OV - Ovarian serous cystadenocarcinoma(65;2.73e-17)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)		CCTAGATGCTTTCCCTCGAAG	0.597													5	94					0	0	1	0	0
LPAL2	80350	broad.mit.edu	37	6	160913865	160913865	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:160913865G>A	uc003qtj.2	-	3		c.456C>T			LPAL2_uc011efy.1_RNA	NR_028093				Homo sapiens cDNA FLJ43922 fis, clone TESTI4012406.												0		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.214)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)		TCAGAGGCACGAACACAGTCC	0.507													4	28					0	0	1	0	0
PLG	5340	broad.mit.edu	37	6	161157928	161157928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:161157928C>T	uc003qtm.3	+	14	1754	c.1691C>T	c.(1690-1692)TCA>TTA	p.S564L		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	564					extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	GCGGCCCCTTCATTTGATTGT	0.507													4	26					0	0	1	0	0
PLG	5340	broad.mit.edu	37	6	161157941	161157941	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:161157941G>A	uc003qtm.3	+	14	1767	c.1704G>A	c.(1702-1704)GGG>GGA	p.G568G		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	568					extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	TTGATTGTGGGAAGCCTCAAG	0.507													4	23					0	0	1	0	0
MAP3K4	4216	broad.mit.edu	37	6	161471000	161471000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:161471000C>T	uc003qtn.2	+	3	1838	c.1696C>T	c.(1696-1698)CGT>TGT	p.R566C	MAP3K4_uc010kkc.1_Missense_Mutation_p.R566C|MAP3K4_uc003qto.2_Missense_Mutation_p.R566C|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_5'UTR	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	566					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		AAAGAACGATCGTCCAGTGGA	0.358													5	24					0	0	1	0	0
AGPAT4	56895	broad.mit.edu	37	6	161587427	161587427	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:161587427C>T	uc003qtr.1	-	3	428	c.201G>A	c.(199-201)TGG>TGA	p.W67*	AGPAT4_uc003qts.1_Intron|AGPAT4_uc011egb.1_Intron|AGPAT4_uc003qtt.1_RNA|AGPAT4_uc011egc.1_Nonsense_Mutation_p.W67*|AGPAT4_uc011egd.1_Nonsense_Mutation_p.W5*|AGPAT4_uc011ege.1_Intron	NM_020133	NP_064518	Q9NRZ5	PLCD_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 4	67					phospholipid biosynthetic process	integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity|protein binding				0		Breast(66;0.000289)|Ovarian(120;0.0266)|Prostate(117;0.0285)		OV - Ovarian serous cystadenocarcinoma(65;2.23e-17)|BRCA - Breast invasive adenocarcinoma(81;3.58e-05)		TGCCCGACCACCACTCCAGCA	0.547													4	46					0	0	1	0	0
PACRG	135138	broad.mit.edu	37	6	163235239	163235239	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:163235239C>T	uc003qua.2	+	3	441	c.217C>T	c.(217-219)CGA>TGA	p.R73*	PACRG_uc003qub.2_Nonsense_Mutation_p.R73*|PACRG_uc003quc.2_Nonsense_Mutation_p.R73*	NM_152410	NP_689623	Q96M98	PACRG_HUMAN	parkin co-regulated gene protein isoform 1	73											0		Breast(66;2.41e-05)|Ovarian(120;0.0245)|Prostate(117;0.0273)|all_neural(5;0.0416)|Glioma(2;0.203)		OV - Ovarian serous cystadenocarcinoma(33;4.31e-19)|GBM - Glioblastoma multiforme(2;7.42e-11)|BRCA - Breast invasive adenocarcinoma(81;3.19e-05)|KIRC - Kidney renal clear cell carcinoma(3;0.205)|Kidney(3;0.242)		CACAGCATTTCGAAAATTCTA	0.468													9	55					0	0	1	0	0
C6orf118	168090	broad.mit.edu	37	6	165715174	165715174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:165715174C>T	uc003qum.3	-	2	673	c.637G>A	c.(637-639)GAC>AAC	p.D213N	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	213											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		CTGTACCTGTCTGCGCTGGTG	0.622													7	66					0	0	1	0	0
MLLT4	4301	broad.mit.edu	37	6	168265363	168265363	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:168265363C>T	uc003qwd.2	+	2	380	c.238C>T	c.(238-240)CGA>TGA	p.R80*	MLLT4_uc003qwb.1_Nonsense_Mutation_p.R80*|MLLT4_uc003qwc.1_Nonsense_Mutation_p.R80*	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	80	Ras-associating 1.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GGAGAAATTTCGACCTGATAT	0.453			T	MLL	AL								22	117					0	0	1	0	0
MLLT4	4301	broad.mit.edu	37	6	168272960	168272960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:168272960C>T	uc003qwd.2	+	4	620	c.478C>T	c.(478-480)CTC>TTC	p.L160F	MLLT4_uc003qwb.1_Missense_Mutation_p.L160F|MLLT4_uc003qwc.1_Missense_Mutation_p.L161F	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	161	Potential.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		CAAGAGAACTCTCTCaaagaa	0.333			T	MLL	AL								4	46					0	0	1	0	0
WDR27	253769	broad.mit.edu	37	6	170059297	170059297	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:170059297A>C	uc003qwx.2	-	12	1724	c.1204T>G	c.(1204-1206)TGC>GGC	p.C402G	WDR27_uc003qwv.1_RNA|WDR27_uc010kkw.1_Missense_Mutation_p.C402G|WDR27_uc003qwy.2_Missense_Mutation_p.C275G|WDR27_uc003qwz.1_Missense_Mutation_p.C135G			A2RRH5	WDR27_HUMAN	RecName: Full=WD repeat-containing protein 27;	372										pancreas(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.216)		OV - Ovarian serous cystadenocarcinoma(33;6.48e-20)|BRCA - Breast invasive adenocarcinoma(81;3.56e-07)|GBM - Glioblastoma multiforme(31;0.00168)		GCCAGCAAGCACAGCACCTGC	0.587													7	122					0	0	1	0	0
C6orf70	55780	broad.mit.edu	37	6	170176145	170176145	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr6:170176145C>T	uc003qxg.1	+	15	1537	c.1504C>T	c.(1504-1506)CGT>TGT	p.R502C	C6orf70_uc011ehb.1_Missense_Mutation_p.R376C|C6orf70_uc003qxh.1_Missense_Mutation_p.R502C|C6orf70_uc010kky.1_Missense_Mutation_p.R376C|C6orf70_uc003qxi.1_Missense_Mutation_p.R150C	NM_018341	NP_060811	Q5T6L9	CF070_HUMAN	hypothetical protein LOC55780	502						integral to membrane				ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.2e-22)|BRCA - Breast invasive adenocarcinoma(81;1.49e-07)|GBM - Glioblastoma multiforme(31;0.00191)		GGACTTGGATCGTCTTCCTAC	0.388													5	53					0	0	1	0	0
PRKAR1B	5575	broad.mit.edu	37	7	750981	750981	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:750981G>A	uc003siu.1	-	3	268	c.162C>T	c.(160-162)TTC>TTT	p.F54F	PRKAR1B_uc003siv.2_Silent_p.F54F|PRKAR1B_uc003siw.1_Silent_p.F54F	NM_002735	NP_002726	P31321	KAP1_HUMAN	protein kinase, cAMP-dependent, regulatory, type	54	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|protein phosphorylation|regulation of insulin secretion|transmembrane transport|water transport	cAMP-dependent protein kinase complex|cytosol	cAMP binding|cAMP-dependent protein kinase regulator activity				0		Ovarian(82;0.0779)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|Epithelial(4;5.75e-19)|OV - Ovarian serous cystadenocarcinoma(56;2.01e-18)|all cancers(6;3.96e-16)|BRCA - Breast invasive adenocarcinoma(126;0.152)		CCAGCTTCTCGAAGTGCTCCC	0.652													19	59					0	0	1	0	0
HEATR2	54919	broad.mit.edu	37	7	796521	796521	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:796521C>T	uc010krz.1	+	6	1380	c.1360C>T	c.(1360-1362)CTG>TTG	p.L454L	HEATR2_uc003siz.2_Silent_p.L322L	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	454				L -> M (in Ref. 3; AAH47240).			protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		CTCCGGCCTCCTGGTGCTGGC	0.647													8	131					0	0	1	0	0
SUN1	23353	broad.mit.edu	37	7	883119	883119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:883119C>T	uc011jvp.1	+	6	699	c.620C>T	c.(619-621)CCC>CTC	p.P207L	SUN1_uc010ksa.1_Missense_Mutation_p.P228L|SUN1_uc003sje.1_Missense_Mutation_p.P207L|SUN1_uc003sjf.2_Missense_Mutation_p.P157L|SUN1_uc011jvq.1_Intron|SUN1_uc003sjg.2_Missense_Mutation_p.P18L	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	207	Nuclear.				cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						GCCCCCGGGCCCGTGTCGAGA	0.547													16	323					0	0	1	0	0
SUN1	23353	broad.mit.edu	37	7	883151	883151	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:883151C>T	uc011jvp.1	+	6	731	c.652C>T	c.(652-654)CAA>TAA	p.Q218*	SUN1_uc010ksa.1_Nonsense_Mutation_p.Q239*|SUN1_uc003sje.1_Nonsense_Mutation_p.Q218*|SUN1_uc003sjf.2_Nonsense_Mutation_p.Q168*|SUN1_uc011jvq.1_Intron|SUN1_uc003sjg.2_Nonsense_Mutation_p.Q29*	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	218	SYNE2-binding.|Nuclear.				cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						GGACAGGAATCAAAAATGTAA	0.488													18	280					0	0	1	0	0
MICALL2	79778	broad.mit.edu	37	7	1481878	1481879	+	Missense_Mutation	DNP	GG	AA	AA	rs139735568		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:1481878_1481879GG>AA	uc003skj.3	-	7	1807_1808	c.1660_1661CC>TT	c.(1660-1662)CCG>TTG	p.P554L	MICALL2_uc003ski.3_Missense_Mutation_p.P41L	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	554						cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		CTCTGGCTTCGGCCTGGAGCCA	0.678													10	124					0	0	1	0	0
MICALL2	79778	broad.mit.edu	37	7	1481952	1481952	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:1481952G>A	uc003skj.3	-	7	1734	c.1587C>T	c.(1585-1587)TCC>TCT	p.S529S	MICALL2_uc003ski.3_Silent_p.S16S	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	529						cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		GGGGCAACGCGGATGCCTGAG	0.672													10	119					0	0	1	0	0
TMEM184A	202915	broad.mit.edu	37	7	1595055	1595055	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:1595055C>T	uc003skv.3	-	2	383	c.66G>A	c.(64-66)CAG>CAA	p.Q22Q	TMEM184A_uc003skw.3_5'UTR	NM_001097620	NP_001091089	Q6ZMB5	T184A_HUMAN	transmembrane protein 184A	22						integral to membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;5.88e-15)		GGGGGCTGGGCTGCGGCCAGT	0.682													18	93					0	0	1	0	0
TMEM184A	202915	broad.mit.edu	37	7	1595100	1595100	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:1595100G>A	uc003skv.3	-	2	338	c.21C>T	c.(19-21)ATC>ATT	p.I7I	TMEM184A_uc003skw.3_5'UTR	NM_001097620	NP_001091089	Q6ZMB5	T184A_HUMAN	transmembrane protein 184A	7						integral to membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;5.88e-15)		CTGTCTCCAGGATCCCTGAGA	0.667													5	79					0	0	1	0	0
CHST12	55501	broad.mit.edu	37	7	2473018	2473018	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:2473018C>T	uc003smc.2	+	2	879	c.744C>T	c.(742-744)TTC>TTT	p.F248F	CHST12_uc003smd.2_Silent_p.F248F	NM_018641	NP_061111	Q9NRB3	CHSTC_HUMAN	carbohydrate sulfotransferase 12	248	PAPS (By similarity).|Lumenal (Potential).				dermatan sulfate biosynthetic process	integral to Golgi membrane	3'-phosphoadenosine 5'-phosphosulfate binding|chondroitin 4-sulfotransferase activity|protein binding			kidney(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0847)|OV - Ovarian serous cystadenocarcinoma(56;2.25e-13)		GCGACCCCTTCGTGCGCCTGA	0.597													15	71					0	0	1	0	0
LFNG	3955	broad.mit.edu	37	7	2559870	2559870	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:2559870C>T	uc003smf.2	+	1	392	c.375C>T	c.(373-375)TTC>TTT	p.F125F	LFNG_uc003smg.2_Silent_p.F125F	NM_001040167	NP_001035257	Q8NES3	LFNG_HUMAN	lunatic fringe isoform a	125	Lumenal (Potential).				organ morphogenesis	extracellular region|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity				0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;2.54e-14)		CCAAAAAGTTCCACCGCGCGC	0.463													6	41					0	0	1	0	0
LFNG	3955	broad.mit.edu	37	7	2564905	2564905	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:2564905C>T	uc003smf.2	+	3	551	c.534C>T	c.(532-534)TCC>TCT	p.S178S	LFNG_uc003smg.2_Silent_p.S178S	NM_001040167	NP_001035257	Q8NES3	LFNG_HUMAN	lunatic fringe isoform a	178	Lumenal (Potential).				organ morphogenesis	extracellular region|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity				0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;2.54e-14)		AGGCGCTGTCCTGCAAGATGG	0.677													5	27					0	0	1	0	0
C7orf27	221927	broad.mit.edu	37	7	2582846	2582846	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:2582846G>A	uc003smi.2	-	6	957	c.915C>T	c.(913-915)CTC>CTT	p.L305L	C7orf27_uc003smh.3_5'Flank|C7orf27_uc003smj.1_3'UTR	NM_152743	NP_689956	Q6PJG6	BRAT1_HUMAN	hypothetical protein LOC221927 precursor	305					response to ionizing radiation	nucleus	protein binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;2.91e-14)		ACCAGTGCTCGAGCTTCAGGA	0.647													8	52					0	0	1	0	0
IQCE	23288	broad.mit.edu	37	7	2611206	2611206	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:2611206C>T	uc003smo.3	+	4	361	c.177C>T	c.(175-177)TCC>TCT	p.S59S	IQCE_uc010ksm.1_Silent_p.S59S|IQCE_uc003sml.1_Silent_p.S59S|IQCE_uc011jvy.1_Silent_p.S43S|IQCE_uc011jvz.1_5'UTR|IQCE_uc003smk.3_Silent_p.S43S|IQCE_uc003smn.3_5'UTR	NM_152558	NP_689771	Q6IPM2	IQCE_HUMAN	IQ motif containing E isoform 1	59											0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;1.23e-13)		CCTGGAGGTCCCTCAGGACGG	0.597													16	70					0	0	1	0	0
AMZ1	155185	broad.mit.edu	37	7	2752419	2752419	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:2752419G>A	uc003smr.1	+	7	1765	c.1404G>A	c.(1402-1404)GGG>GGA	p.G468G	AMZ1_uc003sms.1_3'UTR|AMZ1_uc011jwa.1_Silent_p.G217G	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	468							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		AGGTGCTGGGGGACAAGTTCT	0.662													4	61					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2962271	2962271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:2962271C>T	uc003smv.2	-	17	2670	c.2266G>A	c.(2266-2268)GAA>AAA	p.E756K		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	756					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		GTCTCACCTTCGTGGTTGACC	0.493			Mis		DLBCL								12	48					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2969707	2969707	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:2969707G>A	uc003smv.2	-	12	1976	c.1572C>T	c.(1570-1572)GCC>GCT	p.A524A		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	524					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CGTGCCCCTTGGCTGTCCTCA	0.353			Mis		DLBCL								6	52					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2983977	2983977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:2983977C>T	uc003smv.2	-	5	957	c.553G>A	c.(553-555)GAA>AAA	p.E185K		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	185	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		TCCCGCTCTTCCTTCATCTTG	0.562			Mis		DLBCL								10	114					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2984134	2984134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:2984134C>T	uc003smv.2	-	5	800	c.396G>A	c.(394-396)ATG>ATA	p.M132I		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	132	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity	p.Q132>HTLMTWW(1)		haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		TGACCTCGTTCATCAGGAAGT	0.602			Mis		DLBCL								5	78					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	3678647	3678647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:3678647C>T	uc003smx.2	+	3	609	c.470C>T	c.(469-471)CCA>CTA	p.P157L		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	157	Ig-like C2-type 1.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TACATTATTCCATCTTTGCAG	0.403													3	26					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	3990604	3990604	+	Silent	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:3990604G>T	uc003smx.2	+	6	1036	c.897G>T	c.(895-897)CCG>CCT	p.P299P		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	299	Ig-like C2-type 3.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TGGTTCCCCCGGGCAACAGAA	0.512													4	47					1	1	1	1	0
SDK1	221935	broad.mit.edu	37	7	4051787	4051787	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:4051787G>A	uc003smx.2	+	16	2479	c.2340G>A	c.(2338-2340)CGG>CGA	p.R780R	SDK1_uc010kso.2_Silent_p.R56R	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	780	Fibronectin type-III 2.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CCAGTGGGCGGACTAATCAGT	0.517													15	168					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4260871	4260871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:4260871G>A	uc003smx.2	+	40	5841	c.5702G>A	c.(5701-5703)GGA>GAA	p.G1901E	SDK1_uc010kso.2_Missense_Mutation_p.G1157E|SDK1_uc003smy.2_Missense_Mutation_p.G388E	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1901					cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TATCCCGCAGGATCCCCGGGC	0.617													5	28					0	0	1	0	0
SDK1	221935	broad.mit.edu	37	7	4304796	4304796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:4304796C>T	uc003smx.2	+	45	6561	c.6422C>T	c.(6421-6423)TCC>TTC	p.S2141F	SDK1_uc010kso.2_Missense_Mutation_p.S1397F|SDK1_uc003smy.2_Missense_Mutation_p.S628F|SDK1_uc003smz.2_Missense_Mutation_p.S201F	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	2141	Extracellular (Potential).|Cytoplasmic (Potential).				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CCCAAGCACTCCTTCGTGAAC	0.682													5	21					0	0	1	0	0
FOXK1	221937	broad.mit.edu	37	7	4780485	4780485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:4780485C>T	uc003snc.1	+	2	587	c.577C>T	c.(577-579)CCC>TCC	p.P193S	FOXK1_uc003sna.1_Missense_Mutation_p.P30S|FOXK1_uc003snb.1_Missense_Mutation_p.P193S	NM_001037165	NP_001032242	P85037	FOXK1_HUMAN	forkhead box K1	193					cell differentiation|embryo development|muscle organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			upper_aerodigestive_tract(1)|skin(1)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;7.43e-15)		CTTCCGGTTTCCCAGCACGGC	0.602													37	324					0	0	1	0	0
KIAA0415	9907	broad.mit.edu	37	7	4820812	4820812	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:4820812C>T	uc003sne.2	+	2	131	c.48C>T	c.(46-48)ATC>ATT	p.I16I	KIAA0415_uc010ksp.2_RNA	NM_014855	NP_055670	O43299	K0415_HUMAN	hypothetical protein LOC9907	16					cell death|double-strand break repair via homologous recombination	cytoplasm|nucleus	protein binding			central_nervous_system(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.091)|OV - Ovarian serous cystadenocarcinoma(56;8.35e-15)		TTAGGGAGATCCAGGACGAGG	0.542													9	75					0	0	1	0	0
RBAK	57786	broad.mit.edu	37	7	5104249	5104249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:5104249C>T	uc010kss.1	+	6	1486	c.1162C>T	c.(1162-1164)CTC>TTC	p.L388F	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Missense_Mutation_p.L388F	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	388	C2H2-type 5.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		CAAGTCTGCTCTCAGTGACCA	0.463													8	67					0	0	1	0	0
LOC389458	389458	broad.mit.edu	37	7	5112727	5112727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:5112727G>A	uc003snr.2	+	8	923	c.610G>A	c.(610-612)GGG>AGG	p.G204R	LOC389458_uc010kst.2_3'UTR					Synthetic construct DNA, clone: pF1KB3788, Homo sapiens RBAK gene for RB-associated KRAB repressor, complete cds, without stop codon, in Flexi system.												0						CGGGGAACATGGGGCTTTCCC	0.657													4	38					0	0	1	0	0
FBXL18	80028	broad.mit.edu	37	7	5541075	5541075	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:5541075C>T	uc003soo.2	-	3	919	c.825G>A	c.(823-825)GAG>GAA	p.E275E	FBXL18_uc003son.3_Silent_p.E275E	NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	275										central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		TGGCGCCGCTCTCCGCGAAGC	0.642													5	36					0	0	1	0	0
CYTH3	9265	broad.mit.edu	37	7	6205193	6205193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:6205193C>T	uc003spt.2	-	11	1059	c.955G>A	c.(955-957)GAG>AAG	p.E319K	CYTH3_uc011jws.1_Missense_Mutation_p.E234K	NM_004227	NP_004218	O43739	CYH3_HUMAN	cytohesin 3	320	PH.				regulation of ARF protein signal transduction|regulation of cell adhesion|vesicle-mediated transport	cytoplasm|membrane fraction|plasma membrane	1-phosphatidylinositol binding|ARF guanyl-nucleotide exchange factor activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity				0						CGGGGGTCCTCCACCTCCCTG	0.612													24	84					0	0	1	0	0
MIOS	54468	broad.mit.edu	37	7	7612821	7612821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:7612821C>T	uc003srf.2	+	4	1023	c.715C>T	c.(715-717)CGT>TGT	p.R239C	MIOS_uc010ktp.1_Missense_Mutation_p.R239C	NM_019005	NP_061878	Q9NXC5	MIO_HUMAN	missing oocyte, meiosis regulator, homolog	239	WD 4.										0						TTTCCACGATCGTGTTGCTTC	0.398													12	46					0	0	1	0	0
GLCCI1	113263	broad.mit.edu	37	7	8125883	8125883	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:8125883C>T	uc003srk.2	+	8	1918	c.1359C>T	c.(1357-1359)TTC>TTT	p.F453F		NM_138426	NP_612435	Q86VQ1	GLCI1_HUMAN	glucocorticoid induced transcript 1	453											0		Ovarian(82;0.0608)		UCEC - Uterine corpus endometrioid carcinoma (126;0.206)		AGGTTAATTTCATCCCAACCG	0.433													8	135					0	0	1	0	0
ICA1	3382	broad.mit.edu	37	7	8167502	8167502	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:8167502C>T	uc003srm.2	-	13	1397	c.1330_splice	c.e13+1	p.E444_splice	ICA1_uc010ktr.2_Splice_Site_p.E473_splice|ICA1_uc003srl.2_Splice_Site_p.E432_splice|ICA1_uc003srn.3_Splice_Site_p.E370_splice|ICA1_uc003srp.3_Splice_Site_p.E443_splice|ICA1_uc010kts.2_Splice_Site|ICA1_uc003srq.2_Splice_Site_p.E444_splice|ICA1_uc003srr.2_Splice_Site_p.E443_splice|ICA1_uc003sro.3_Splice_Site_p.E444_splice	NM_022307	NP_071682	Q05084	ICA69_HUMAN	islet cell autoantigen 1						neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane				central_nervous_system(1)	1		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		ACCTTACCTACCTTGTAGCGA	0.423													10	134					0	0	1	0	0
PHF14	9678	broad.mit.edu	37	7	11076096	11076096	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:11076096C>T	uc003sry.1	+	9	2089	c.1654C>T	c.(1654-1656)CGA>TGA	p.R552*	PHF14_uc011jxi.1_Nonsense_Mutation_p.R267*|PHF14_uc003srz.2_Nonsense_Mutation_p.R552*|PHF14_uc011jxj.1_Nonsense_Mutation_p.R267*	NM_014660	NP_055475	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 2	552							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		AGAACTAGCTCGATCTACCAG	0.433													3	11					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11441515	11441515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:11441515C>T	uc003ssf.3	-	22	4570	c.4318G>A	c.(4318-4320)GGA>AGA	p.G1440R		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1440	Extracellular (Potential).|TSP type-1 15.					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		ACCTGTATTCCACCAAAGCCT	0.438										HNSCC(18;0.044)			5	43					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11452352	11452352	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:11452352G>A	uc003ssf.3	-	17	3865	c.3613C>T	c.(3613-3615)CCT>TCT	p.P1205S		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1205	TSP type-1 11.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		ACAGCATTAGGGCAAGATCTT	0.413										HNSCC(18;0.044)			3	17					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11676356	11676356	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:11676356C>T	uc003ssf.3	-	2	675	c.423G>A	c.(421-423)GAG>GAA	p.E141E		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	141	Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		CAAGAGGTTTCTCTAGGCTTT	0.463										HNSCC(18;0.044)			4	45					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11676576	11676576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:11676576C>T	uc003ssf.3	-	2	455	c.203G>A	c.(202-204)CGA>CAA	p.R68Q		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	68	TSP type-1 1.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		TCCCATACATCGGCCCCATGG	0.453										HNSCC(18;0.044)			8	48					0	0	1	0	0
ETV1	2115	broad.mit.edu	37	7	13975401	13975401	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:13975401G>A	uc011jxq.1	-	8	1225	c.486C>T	c.(484-486)GAC>GAT	p.D162D	ETV1_uc011jxn.1_Silent_p.D122D|ETV1_uc011jxo.1_Intron|ETV1_uc011jxp.1_Silent_p.D104D|ETV1_uc003ssw.3_Silent_p.D162D|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Silent_p.D144D|ETV1_uc011jxs.1_Silent_p.D144D|ETV1_uc010ktv.2_Silent_p.D31D	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	162					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						GGAAGGCCCGGTCAGGTTTCG	0.557			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								14	188					0	0	1	0	0
DGKB	1607	broad.mit.edu	37	7	14613944	14613944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:14613944C>T	uc003ssz.2	-	19	1853	c.1666G>A	c.(1666-1668)GAA>AAA	p.E556K	DGKB_uc011jxt.1_Missense_Mutation_p.E537K|DGKB_uc003sta.2_Missense_Mutation_p.E556K|DGKB_uc011jxu.1_Missense_Mutation_p.E555K	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	556	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	AACATGATTTCTGTGCTGTTT	0.348													12	109					0	0	1	0	0
MEOX2	4223	broad.mit.edu	37	7	15652155	15652155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:15652155C>T	uc003stc.2	-	3	1053	c.772G>A	c.(772-774)GAA>AAA	p.E258K	MEOX2_uc011jxw.1_Missense_Mutation_p.E258K	NM_005924	NP_005915	P50222	MEOX2_HUMAN	mesenchyme homeobox 2	258					blood circulation|multicellular organismal development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.0822)		TTCACCAGTTCCTTTTCCCGA	0.507													5	67					0	0	1	0	0
AGR3	155465	broad.mit.edu	37	7	16902253	16902253	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:16902253C>T	uc003sts.2	-	4	280	c.207G>A	c.(205-207)GAG>GAA	p.E69E		NM_176813	NP_789783	Q8TD06	AGR3_HUMAN	breast cancer membrane protein 11 precursor	69						extracellular region					0	Lung NSC(10;0.0376)|all_lung(11;0.0721)|all_epithelial(12;0.202)			UCEC - Uterine corpus endometrioid carcinoma (126;0.184)		ATTGACAATCCTCCAGGTGAT	0.294													12	39					0	0	1	0	0
AGR3	155465	broad.mit.edu	37	7	16918164	16918164	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:16918164C>T	uc003sts.2	-	2	152	c.79G>A	c.(79-81)GAA>AAA	p.E27K		NM_176813	NP_789783	Q8TD06	AGR3_HUMAN	breast cancer membrane protein 11 precursor	27						extracellular region					0	Lung NSC(10;0.0376)|all_lung(11;0.0721)|all_epithelial(12;0.202)			UCEC - Uterine corpus endometrioid carcinoma (126;0.184)		GGCCTCTTTTCCTTTTTTATT	0.403													10	48					0	0	1	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18066487	18066487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:18066487C>T	uc003stz.2	-	1	1000	c.919G>A	c.(919-921)GAA>AAA	p.E307K		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	307					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					GAAACAGATTCCCCATTATGA	0.343													40	161					0	0	1	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18067039	18067039	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:18067039G>A	uc003stz.2	-	1	448	c.367C>T	c.(367-369)CAT>TAT	p.H123Y		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	123					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					GTGATGATATGATCCGCACCT	0.468													23	69					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18975448	18975448	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:18975448G>A	uc003suh.2	+	22	2852	c.2811G>A	c.(2809-2811)ACG>ACA	p.T937T	HDAC9_uc003sue.2_Silent_p.T937T|HDAC9_uc003sui.2_Silent_p.T940T|HDAC9_uc003suj.2_Silent_p.T896T|HDAC9_uc003suk.2_Silent_p.T185T	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	937	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	GTCATTTGACGAAGCAATTGA	0.363													6	141					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20721258	20721258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:20721258G>A	uc003suw.3	+	6	1049	c.503G>A	c.(502-504)CGA>CAA	p.R168Q	ABCB5_uc010kuh.2_Missense_Mutation_p.R613Q	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	168	ABC transporter 1.|Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						ATGGCAAAACGAGGTCTATAT	0.418													8	47					0	0	1	0	0
SP8	221833	broad.mit.edu	37	7	20824656	20824656	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:20824656G>A	uc003suy.2	-	3	967	c.726C>T	c.(724-726)ACC>ACT	p.T242T	SP8_uc003suz.2_Silent_p.T260T	NM_198956	NP_945194	Q8IXZ3	SP8_HUMAN	Sp8 transcription factor isoform 2	242					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						AGTGCAGCGAGGTTTGGAGCC	0.721													3	25					0	0	1	0	0
SP4	6671	broad.mit.edu	37	7	21469712	21469712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:21469712C>T	uc003sva.2	+	3	1110	c.929C>T	c.(928-930)TCT>TTT	p.S310F	SP4_uc003svb.2_5'UTR	NM_003112	NP_003103	Q02446	SP4_HUMAN	Sp4 transcription factor	310					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(3)|skin(2)	5						ACCACTACTTCTGCCAGTACT	0.522													4	62					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21609847	21609847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:21609847C>T	uc003svc.2	+	7	1386	c.1355C>T	c.(1354-1356)CCA>CTA	p.P452L		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	452	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AAGCTGAGACCATGGGATTTC	0.328									Kartagener_syndrome				4	14					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21827146	21827146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:21827146C>T	uc003svc.2	+	61	9921	c.9890C>T	c.(9889-9891)TCT>TTT	p.S3297F		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3297	Stalk (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CGAACCAAATCTTTTGCAGCA	0.393									Kartagener_syndrome				5	11					0	0	1	0	0
CDCA7L	55536	broad.mit.edu	37	7	21948002	21948002	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:21948002G>A	uc010kuk.2	-	4	547	c.427C>T	c.(427-429)CGA>TGA	p.R143*	CDCA7L_uc003sve.3_Nonsense_Mutation_p.R109*|CDCA7L_uc010kul.2_Nonsense_Mutation_p.R97*|CDCA7L_uc003svf.3_Nonsense_Mutation_p.R142*|CDCA7L_uc011jyk.1_Nonsense_Mutation_p.R143*	NM_018719	NP_061189	Q96GN5	CDA7L_HUMAN	cell division cycle associated 7-like isoform 1	143					positive regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus					0						AAGGCTACTCGAAGACCAATA	0.453													4	35					0	0	1	0	0
STK31	56164	broad.mit.edu	37	7	23825179	23825179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:23825179C>T	uc003sws.3	+	18	2298	c.2231C>T	c.(2230-2232)CCT>CTT	p.P744L	STK31_uc003swt.3_Missense_Mutation_p.P721L|STK31_uc011jze.1_Missense_Mutation_p.P744L|STK31_uc010kuq.2_Missense_Mutation_p.P721L|STK31_uc003swv.1_5'Flank	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	744	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						AGCAAGCGTCCTTTGGTACGT	0.433													9	31					0	0	1	0	0
DFNA5	1687	broad.mit.edu	37	7	24749972	24749972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:24749972C>T	uc010kus.1	-	6	821	c.733G>A	c.(733-735)GAG>AAG	p.E245K	DFNA5_uc003swz.2_Missense_Mutation_p.E81K|DFNA5_uc003sxa.1_Missense_Mutation_p.E245K|DFNA5_uc010kut.1_Missense_Mutation_p.E81K	NM_001127453	NP_001120925	O60443	DFNA5_HUMAN	deafness, autosomal dominant 5 protein isoform	245					sensory perception of sound					ovary(1)	1						TTCTTGTTCTCGAAGCCACCT	0.488													14	62					0	0	1	0	0
DFNA5	1687	broad.mit.edu	37	7	24758684	24758684	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:24758684G>A	uc010kus.1	-	4	646	c.558C>T	c.(556-558)ATC>ATT	p.I186I	DFNA5_uc003swz.2_Silent_p.I22I|DFNA5_uc003sxa.1_Silent_p.I186I|DFNA5_uc010kut.1_Silent_p.I22I|DFNA5_uc003sxb.2_Silent_p.I186I	NM_001127453	NP_001120925	O60443	DFNA5_HUMAN	deafness, autosomal dominant 5 protein isoform	186					sensory perception of sound					ovary(1)	1						TCTTGGTCTGGATGCCCACGA	0.582													32	98					0	0	1	0	0
C7orf31	136895	broad.mit.edu	37	7	25175643	25175643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:25175643G>A	uc003sxn.1	-	10	2282	c.1721C>T	c.(1720-1722)TCG>TTG	p.S574L	C7orf31_uc003sxm.1_Missense_Mutation_p.S416L	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	574											0						CTTCATCCCCGAATGCTCATT	0.383													8	66					0	0	1	0	0
C7orf31	136895	broad.mit.edu	37	7	25175867	25175867	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:25175867G>A	uc003sxn.1	-	10	2058	c.1497C>T	c.(1495-1497)TTC>TTT	p.F499F	C7orf31_uc003sxm.1_Silent_p.F341F	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	499											0						GTTCTAAAGTGAAAGCTTCCG	0.363													26	75					0	0	1	0	0
C7orf31	136895	broad.mit.edu	37	7	25182351	25182351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:25182351G>A	uc003sxn.1	-	8	1328	c.767C>T	c.(766-768)TCA>TTA	p.S256L	C7orf31_uc003sxm.1_Missense_Mutation_p.S98L	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	256											0						AGGGTCCCATGAATTTAAAGA	0.393													7	50					0	0	1	0	0
HOXA1	3198	broad.mit.edu	37	7	27134227	27134227	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:27134227G>A	uc003sye.2	-	2	934	c.840C>T	c.(838-840)CGC>CGT	p.R280R	HOXA1_uc003syd.2_3'UTR|uc003syg.2_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	homeobox A1 isoform a	280	Homeobox.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3						GCTTCATTCGGCGGTTCTGGA	0.572													21	62					0	0	1	0	0
HOXA5	3202	broad.mit.edu	37	7	27181643	27181643	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:27181643C>T	uc003syn.1	-	2	685	c.624G>A	c.(622-624)CTG>CTA	p.L208L		NM_019102	NP_061975	P20719	HXA5_HUMAN	homeobox A5	208	Homeobox.				negative regulation of angiogenesis|negative regulation of erythrocyte differentiation|positive regulation of apoptosis|positive regulation of myeloid cell differentiation|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TCTCCAGCTCCAGGGTCTGGT	0.532											OREG0017911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	70					0	0	1	0	0
HOXA7	3204	broad.mit.edu	37	7	27194647	27194647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:27194647C>T	uc003sys.2	-	2	706	c.574G>A	c.(574-576)GAA>AAA	p.E192K	HOXA6_uc003syq.1_5'Flank|uc003syr.1_3'UTR	NM_006896	NP_008827	P31268	HXA7_HUMAN	homeobox A7	192					angiogenesis|negative regulation of cell-matrix adhesion|negative regulation of keratinocyte differentiation|negative regulation of leukocyte migration|negative regulation of monocyte differentiation|negative regulation of transcription from RNA polymerase II promoter		sequence-specific DNA binding|transcription factor binding				0						GTCGGACCTTCGTCCTTATGC	0.537													15	133					0	0	1	0	0
HOXA13	3209	broad.mit.edu	37	7	27238898	27238898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:27238898C>T	uc003szb.1	-	1	828	c.799G>A	c.(799-801)GAA>AAA	p.E267K	uc003szc.1_5'Flank	NM_000522	NP_000513	P31271	HXA13_HUMAN	homeobox A13	267					skeletal system development	nucleus	sequence-specific DNA binding			breast(1)	1						CCCAAGGGTTCGTGGCGCGAC	0.677			T	NUP98	AML								4	39					0	0	1	0	0
HIBADH	11112	broad.mit.edu	37	7	27669002	27669002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:27669002G>A	uc003szf.2	-	4	667	c.472C>T	c.(472-474)CCT>TCT	p.P158S	HIBADH_uc003szg.2_Missense_Mutation_p.P109S|HIBADH_uc003szh.2_Missense_Mutation_p.P57S|HIBADH_uc003szi.2_Missense_Mutation_p.P109S	NM_152740	NP_689953	P31937	3HIDH_HUMAN	3-hydroxyisobutyrate dehydrogenase precursor	158					branched chain family amino acid catabolic process|pentose-phosphate shunt|valine metabolic process	mitochondrial matrix	3-hydroxyisobutyrate dehydrogenase activity|NAD binding|phosphogluconate dehydrogenase (decarboxylating) activity			ovary(2)	2			GBM - Glioblastoma multiforme(3;0.0368)		NADH(DB00157)	CCAGAAACAGGGGCATCCATG	0.363													6	85					0	0	1	0	0
JAZF1	221895	broad.mit.edu	37	7	28220125	28220125	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:28220125G>A	uc003szn.2	-	1	313	c.72C>T	c.(70-72)CCC>CCT	p.P24P	uc011jzq.1_5'UTR	NM_175061	NP_778231	Q86VZ6	JAZF1_HUMAN	JAZF zinc finger 1	24	C2H2-type 1.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcriptional repressor complex	nucleic acid binding|transcription corepressor activity|zinc ion binding		JAZF1/SUZ12(131)	soft_tissue(98)|endometrium(33)	131						CGGCCAGGGTGGGGAAGTGGA	0.672			T	SUZ12	endometrial stromal tumours								54	452					0	0	1	0	0
CREB5	9586	broad.mit.edu	37	7	28527820	28527820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:28527820G>A	uc003szq.2	+	2	421	c.31G>A	c.(31-33)GAG>AAG	p.E11K	CREB5_uc003szo.2_Intron|CREB5_uc003szr.2_Missense_Mutation_p.E4K	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	11					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						GATGAATTTGGAGCAGGAGAG	0.512													19	354					0	0	1	0	0
CREB5	9586	broad.mit.edu	37	7	28547262	28547262	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:28547262G>A	uc003szq.2	+	4	588	c.198G>A	c.(196-198)CTG>CTA	p.L66L	CREB5_uc003szo.2_Silent_p.L33L|CREB5_uc003szr.2_Silent_p.L59L	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	66					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						CGAGATTCCTGAAGAACTGCG	0.522													11	331					0	0	1	0	0
CREB5	9586	broad.mit.edu	37	7	28547345	28547345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:28547345G>A	uc003szq.2	+	4	671	c.281G>A	c.(280-282)AGC>AAC	p.S94N	CREB5_uc003szo.2_Missense_Mutation_p.S61N|CREB5_uc003szr.2_Missense_Mutation_p.S87N	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	94					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						GAAGAGGAGAGCAGCAAGCGG	0.567													17	240					0	0	1	0	0
TRIL	9865	broad.mit.edu	37	7	28997066	28997066	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:28997066G>A	uc003szt.2	-	3	964	c.597C>T	c.(595-597)TTC>TTT	p.F199F	uc003szu.1_5'Flank	NM_014817	NP_055632	Q7L0X0	TRIL_HUMAN	TLR4 interactor with leucine rich repeats	199	Extracellular (Potential).|LRR 6.				inflammatory response|innate immune response|regulation of cytokine production involved in immune response|toll-like receptor 4 signaling pathway	lipopolysaccharide receptor complex	lipopolysaccharide binding				0						CTAGCTGGGCGAAGGCGTTCT	0.662													8	91					0	0	1	0	0
CPVL	54504	broad.mit.edu	37	7	29135775	29135775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:29135775G>A	uc003szv.2	-	4	466	c.347C>T	c.(346-348)TCC>TTC	p.S116F	CPVL_uc003szw.2_Missense_Mutation_p.S116F|CPVL_uc003szx.2_Missense_Mutation_p.S116F	NM_031311	NP_112601	Q9H3G5	CPVL_HUMAN	serine carboxypeptidase vitellogenic-like	116					proteolysis		protein binding|serine-type carboxypeptidase activity			ovary(2)	2						TCCAAACATGGATGAACCTCC	0.463													8	108					0	0	1	0	0
GARS	2617	broad.mit.edu	37	7	30642717	30642717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:30642717C>T	uc003tbm.2	+	5	994	c.637C>T	c.(637-639)CGT>TGT	p.R213C		NM_002047	NP_002038	P41250	SYG_HUMAN	glycyl-tRNA synthetase	213		Substrate.			cell death|diadenosine tetraphosphate biosynthetic process|glycyl-tRNA aminoacylation	cytosol|mitochondrial matrix|soluble fraction	ATP binding|glycine-tRNA ligase activity|protein dimerization activity			ovary(1)	1					Glycine(DB00145)	AGAATGTTTTCGTGCTGACCA	0.353													6	46					0	0	1	0	0
CRHR2	1395	broad.mit.edu	37	7	30702320	30702320	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:30702320G>A	uc003tbn.2	-	6	931	c.687C>T	c.(685-687)TTC>TTT	p.F229F	CRHR2_uc010kvw.1_Silent_p.F229F|CRHR2_uc010kvx.1_Silent_p.F228F|CRHR2_uc010kvy.1_Silent_p.F65F|CRHR2_uc003tbo.2_Silent_p.F215F|CRHR2_uc003tbp.2_Silent_p.F256F	NM_001883	NP_001874	Q13324	CRFR2_HUMAN	corticotropin releasing hormone receptor 2	229	Helical; Name=4; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(2)|ovary(1)|skin(1)	4						ACCATCCGATGAAGAGGAAGA	0.582													5	59					0	0	1	0	0
INMT	11185	broad.mit.edu	37	7	30791781	30791781	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:30791781C>T	uc003tbs.1	+	1	31	c.15C>T	c.(13-15)TTC>TTT	p.F5F	FAM188B_uc010kwe.2_5'UTR|INMT_uc010kwc.1_Intron|INMT_uc010kwd.1_Silent_p.F5F	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	5						cytoplasm	amine N-methyltransferase activity				0						AGGGTGGCTTCACTGGGGGTG	0.582													7	128					0	0	1	0	0
INMT	11185	broad.mit.edu	37	7	30791802	30791802	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:30791802G>A	uc003tbs.1	+	1	52	c.36G>A	c.(34-36)CAG>CAA	p.Q12Q	FAM188B_uc010kwe.2_5'UTR|INMT_uc010kwc.1_Intron|INMT_uc010kwd.1_Silent_p.Q12Q	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	12						cytoplasm	amine N-methyltransferase activity				0						ATGAGTACCAGAAGCACTTCC	0.552													8	126					0	0	1	0	0
INMT	11185	broad.mit.edu	37	7	30793474	30793474	+	Silent	SNP	G	A	A	rs113474959		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:30793474G>A	uc003tbs.1	+	2	298	c.282G>A	c.(280-282)CTG>CTA	p.L94L	FAM188B_uc010kwe.2_5'UTR|INMT_uc010kwc.1_RNA|INMT_uc010kwd.1_Silent_p.L93L	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	94						cytoplasm	amine N-methyltransferase activity				0						GGGAGGAGCTGGAAAAGTGGC	0.562													13	181					0	0	1	0	0
INMT	11185	broad.mit.edu	37	7	30795310	30795310	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:30795310C>T	uc003tbs.1	+	3	651	c.635C>T	c.(634-636)TCC>TTC	p.S212F	FAM188B_uc010kwe.2_Intron|INMT_uc010kwc.1_RNA|INMT_uc010kwd.1_Missense_Mutation_p.S211F	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	212						cytoplasm	amine N-methyltransferase activity				0						CGTGAATTTTCCTGCGTGGCC	0.597													5	35					0	0	1	0	0
AQP1	358	broad.mit.edu	37	7	30951791	30951791	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:30951791C>T	uc003tbv.1	+	1	324	c.267C>T	c.(265-267)ATC>ATT	p.I89I	AQP1_uc011kac.1_Silent_p.I149I	NM_198098	NP_932766	P29972	AQP1_HUMAN	aquaporin 1	89	Cytoplasmic.				ammonium transport|cell volume homeostasis|cellular hyperosmotic response|cellular response to cAMP|cellular response to copper ion|cellular response to dexamethasone stimulus|cellular response to hydrogen peroxide|cellular response to hypoxia|cellular response to mechanical stimulus|cellular response to mercury ion|cellular response to nitric oxide|cellular response to retinoic acid|cellular response to salt stress|cellular response to UV|cerebrospinal fluid secretion|cGMP biosynthetic process|establishment or maintenance of actin cytoskeleton polarity|lateral ventricle development|maintenance of symbiont-containing vacuole via substance secreted by host|negative regulation of apoptosis|odontogenesis|pancreatic juice secretion|positive regulation of angiogenesis|positive regulation of fibroblast proliferation|positive regulation of saliva secretion|renal water transport|response to drug|transepithelial water transport	apical plasma membrane|basal plasma membrane|brush border membrane|cytoplasm|integral to plasma membrane|nuclear membrane|sarcolemma|symbiont-containing vacuole	ammonia transmembrane transporter activity|carbon dioxide transmembrane transporter activity|glycerol transmembrane transporter activity|intracellular cGMP activated cation channel activity|nitric oxide transmembrane transporter activity|potassium channel activity|potassium ion transmembrane transporter activity|protein binding|water channel activity				0		Melanoma(862;0.16)			Acetazolamide(DB00819)	GCTGCCAGATCAGCATCTTCC	0.652													10	92					0	0	1	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31120235	31120235	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:31120235G>A	uc003tca.1	+	5	496	c.273G>A	c.(271-273)GAG>GAA	p.E91E	ADCYAP1R1_uc003tcb.1_Intron|ADCYAP1R1_uc003tcc.1_Silent_p.E91E|ADCYAP1R1_uc003tcd.1_Silent_p.E91E|ADCYAP1R1_uc003tce.1_Silent_p.E91E	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	91	Extracellular (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						CAGTCTGGGAGACCGAAACCA	0.552													9	48					0	0	1	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31142942	31142942	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:31142942G>A	uc003tca.1	+	14	1361	c.1138G>A	c.(1138-1140)GAA>AAA	p.E380K	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.E359K|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.E408K|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.E408K|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.E407K|ADCYAP1R1_uc003tcf.1_Missense_Mutation_p.E138K	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	380	Extracellular (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						CAGCAAAAGGGAAAGACTCGT	0.587													8	109					0	0	1	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378319	31378319	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:31378319G>A	uc003tch.2	-	2	917	c.564C>T	c.(562-564)TTC>TTT	p.F188F		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	188					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						GACCCATCAGGAAACTCCTGG	0.567													7	66					0	0	1	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378687	31378687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:31378687C>T	uc003tch.2	-	2	549	c.196G>A	c.(196-198)GAA>AAA	p.E66K		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	66					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						tcttcctcttccctgtcttcc	0.343													14	94					0	0	1	0	0
CCDC129	223075	broad.mit.edu	37	7	31690883	31690883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:31690883G>A	uc003tcj.1	+	12	3704	c.2711G>A	c.(2710-2712)AGG>AAG	p.R904K	CCDC129_uc011kad.1_Missense_Mutation_p.R914K|CCDC129_uc003tci.1_Missense_Mutation_p.R755K|CCDC129_uc011kae.1_Missense_Mutation_p.R930K|CCDC129_uc003tck.1_Missense_Mutation_p.R812K	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	904	Potential.										0						GAGGAGGAAAGGTAATTACCT	0.483													3	18					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	31793022	31793022	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:31793022G>A	uc003tcm.1	-	18	2575	c.2106C>T	c.(2104-2106)ATC>ATT	p.I702I	PDE1C_uc003tcn.1_Silent_p.I702I|PDE1C_uc003tco.1_Silent_p.I762I	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	702					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			AGTTATGTGAGATGTTCTGAA	0.473													8	90					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	31862716	31862716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:31862716C>T	uc003tcm.1	-	14	2022	c.1553G>A	c.(1552-1554)CGG>CAG	p.R518Q	PDE1C_uc003tcn.1_Missense_Mutation_p.R518Q|PDE1C_uc003tco.1_Missense_Mutation_p.R578Q|PDE1C_uc003tcr.2_Missense_Mutation_p.R518Q|PDE1C_uc003tcs.2_Missense_Mutation_p.R518Q	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	518	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CCATCTCTCCCGATTGATGTG	0.473													7	16					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	31864597	31864597	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:31864597G>A	uc003tcm.1	-	13	1759	c.1290C>T	c.(1288-1290)TTC>TTT	p.F430F	PDE1C_uc003tcn.1_Silent_p.F430F|PDE1C_uc003tco.1_Silent_p.F490F|PDE1C_uc003tcr.2_Silent_p.F430F|PDE1C_uc003tcs.2_Silent_p.F430F	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	430	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TGAAATCAATGAAACCTGAAG	0.438													3	12					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	32209516	32209516	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:32209516C>T	uc003tco.1	-	3	783	c.189G>A	c.(187-189)GGG>GGA	p.G63G		NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	Error:Variant_position_missing_in_Q14123_after_alignment					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CCTTGACATTCCCTGTGAGCC	0.517													8	39					0	0	1	0	0
NT5C3	51251	broad.mit.edu	37	7	33059300	33059300	+	Silent	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:33059300A>T	uc003tdk.2	-	6	569	c.492T>A	c.(490-492)GCT>GCA	p.A164A	AVL9_uc011kai.1_Intron|NT5C3_uc003tdi.2_Silent_p.A125A|NT5C3_uc003tdj.2_Silent_p.A125A	NM_001002010	NP_001002010	Q9H0P0	5NT3_HUMAN	5'-nucleotidase, cytosolic III isoform 1	164					nucleotide metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol|endoplasmic reticulum	2'-phosphotransferase activity|5'-nucleotidase activity|magnesium ion binding|nucleotide binding			ovary(1)	1			GBM - Glioblastoma multiforme(11;0.0894)			CTTTTGGTAAAGCTTGCTGAA	0.313													5	59					0	0	1	0	0
BBS9	27241	broad.mit.edu	37	7	33397598	33397598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:33397598C>T	uc003tdn.1	+	16	2197	c.1684C>T	c.(1684-1686)CTC>TTC	p.L562F	BBS9_uc003tdo.1_Missense_Mutation_p.L527F|BBS9_uc003tdp.1_Missense_Mutation_p.L557F|BBS9_uc003tdq.1_Missense_Mutation_p.L522F|BBS9_uc010kwn.1_RNA|BBS9_uc003tdr.1_Missense_Mutation_p.L86F|BBS9_uc003tds.1_5'UTR|BBS9_uc011kao.1_Missense_Mutation_p.L440F	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	562					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			TCTTCTTAGTCTCTTCCCAGG	0.383									Bardet-Biedl_syndrome				4	11					0	0	1	0	0
BBS9	27241	broad.mit.edu	37	7	33427661	33427661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:33427661C>T	uc003tdn.1	+	19	2533	c.2020C>T	c.(2020-2022)CGG>TGG	p.R674W	BBS9_uc003tdo.1_Missense_Mutation_p.R639W|BBS9_uc003tdp.1_Missense_Mutation_p.R669W|BBS9_uc003tdq.1_Missense_Mutation_p.R634W|BBS9_uc010kwn.1_RNA|BBS9_uc003tdr.1_Missense_Mutation_p.R198W|BBS9_uc003tds.1_Missense_Mutation_p.R97W|BBS9_uc003tdt.2_RNA	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	674					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			TGTACAATTTCGGGCCATTCA	0.403									Bardet-Biedl_syndrome				19	134					0	0	1	0	0
NPSR1	387129	broad.mit.edu	37	7	34698082	34698082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:34698082G>A	uc003teg.1	+	1	186	c.58G>A	c.(58-60)GAT>AAT	p.D20N	AAA1_uc010kwo.1_Intron|AAA1_uc010kwp.1_Intron|AAA1_uc003tdz.2_Intron|AAA1_uc010kwq.1_Intron|AAA1_uc003teb.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.D20N|NPSR1_uc010kwt.1_5'UTR|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Missense_Mutation_p.D20N|NPSR1_uc003tei.1_Missense_Mutation_p.D20N|NPSR1_uc010kww.1_Missense_Mutation_p.D20N|NPSR1_uc011kar.1_Missense_Mutation_p.D20N	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	20	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	GCAGACGCTGGATTCTTCCCC	0.532													7	50					0	0	1	0	0
NPSR1	387129	broad.mit.edu	37	7	34874044	34874044	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:34874044C>T	uc003teg.1	+	6	857	c.729C>T	c.(727-729)ACC>ACT	p.T243T	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.T243T|NPSR1_uc010kwt.1_Silent_p.T90T|NPSR1_uc010kwu.1_Silent_p.T33T|NPSR1_uc010kwv.1_Silent_p.T177T|NPSR1_uc003tei.1_Silent_p.T243T|NPSR1_uc010kww.1_Silent_p.T232T|NPSR1_uc011kar.1_Silent_p.T177T|AAA1_uc010kwy.2_5'Flank|AAA1_uc003tek.3_5'Flank	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	243	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	AAAGCAAAACCTACGAAACAG	0.418													5	17					0	0	1	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35180711	35180711	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:35180711G>A	uc003teq.1	-	11	1386	c.279C>T	c.(277-279)TTC>TTT	p.F93F	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						ACATCAAAATGAAACTAAGGG	0.264													3	11					0	0	1	0	0
KIAA0895	23366	broad.mit.edu	37	7	36396945	36396945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:36396945G>A	uc003tfd.2	-	3	484	c.433C>T	c.(433-435)CGT>TGT	p.R145C	KIAA0895_uc003tfc.2_Missense_Mutation_p.R132C|KIAA0895_uc011kaw.1_5'UTR|KIAA0895_uc003tfb.2_Missense_Mutation_p.R94C|KIAA0895_uc011kax.1_Missense_Mutation_p.R94C|KIAA0895_uc003tfe.2_Missense_Mutation_p.R132C|KIAA0895_uc011kay.1_Missense_Mutation_p.R94C	NM_001100425	NP_001093895	Q8NCT3	K0895_HUMAN	hypothetical protein LOC23366 isoform 1	145											0						TCTTTGCTACGAGAAGTGTTA	0.468													7	35					0	0	1	0	0
ANLN	54443	broad.mit.edu	37	7	36459083	36459083	+	Missense_Mutation	SNP	C	T	T	rs138337760	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:36459083C>T	uc003tff.2	+	10	2068	c.1864C>T	c.(1864-1866)CCA>TCA	p.P622S	ANLN_uc011kaz.1_Missense_Mutation_p.P534S|ANLN_uc003tfg.2_Missense_Mutation_p.P585S|ANLN_uc010kxe.2_Missense_Mutation_p.P584S	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	622	Interaction with F-actin.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						TGTGGTAAGTCCAGAGGTAAG	0.423													5	8					0	0	1	0	0
AOAH	313	broad.mit.edu	37	7	36580017	36580017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:36580017G>A	uc003tfh.3	-	16	1615	c.1214C>T	c.(1213-1215)TCC>TTC	p.S405F	AOAH_uc010kxf.2_Missense_Mutation_p.S405F|AOAH_uc011kba.1_Missense_Mutation_p.S373F	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	405					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						GGGCAGGTGGGAATTTAGATG	0.463													7	33					0	0	1	0	0
ELMO1	9844	broad.mit.edu	37	7	36910047	36910047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:36910047C>T	uc003tfk.1	-	20	2163	c.1856G>A	c.(1855-1857)GGA>GAA	p.G619E	ELMO1_uc003tfi.1_Missense_Mutation_p.G139E|ELMO1_uc003tfj.1_Missense_Mutation_p.G139E|ELMO1_uc011kbb.1_RNA|ELMO1_uc011kbc.1_Missense_Mutation_p.G523E|ELMO1_uc010kxg.1_Missense_Mutation_p.G619E	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	619	PH.				actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						GCAGTCCTTTCCCGTCACCAC	0.413													5	29					0	0	1	0	0
ELMO1	9844	broad.mit.edu	37	7	37172795	37172795	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:37172795C>T	uc003tfk.1	-	14	1438	c.1131G>A	c.(1129-1131)GGG>GGA	p.G377G	ELMO1_uc011kbc.1_Silent_p.G281G|ELMO1_uc010kxg.1_Silent_p.G377G	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	377	ELMO.				actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						GAGCCAACATCCCAGGTGGAG	0.453													11	54					0	0	1	0	0
ELMO1	9844	broad.mit.edu	37	7	37252981	37252981	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:37252981G>A	uc003tfk.1	-	12	1220	c.913C>T	c.(913-915)CTG>TTG	p.L305L	ELMO1_uc011kbc.1_Silent_p.L209L|ELMO1_uc010kxg.1_Silent_p.L305L	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	305					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						CTGTCTTCCAGGAGGTTAAAG	0.502													4	21					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	38370126	38370126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:38370126C>T	uc010kxj.1	-	2	308	c.172G>A	c.(172-174)GAG>AAG	p.E58K	uc010kxk.1_RNA					SubName: Full=Putative uncharacterized protein ENSP00000374866;																		GCCTTCCCCTCCTGGTGTAGG	0.483													5	41					0	0	1	0	0
AMPH	273	broad.mit.edu	37	7	38429504	38429504	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:38429504C>T	uc003tgu.2	-	20	1950	c.1881G>A	c.(1879-1881)GTG>GTA	p.V627V	AMPH_uc003tgv.2_Silent_p.V585V|AMPH_uc003tgt.2_Silent_p.V512V	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	627	SH3.				endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						GCAGTGTTTCCACCTGCAGAA	0.433													9	87					0	0	1	0	0
INHBA	3624	broad.mit.edu	37	7	41739884	41739884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:41739884C>T	uc003thq.2	-	1	324	c.89G>A	c.(88-90)AGC>AAC	p.S30N	LOC285954_uc003tht.3_Intron|INHBA_uc003thr.2_Missense_Mutation_p.S30N|LOC285954_uc003ths.2_Intron	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	30					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						GGGGGCCGCGCTGTGCCCCTC	0.587										TSP Lung(11;0.080)			25	317					0	0	1	0	0
GLI3	2737	broad.mit.edu	37	7	42005077	42005077	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:42005077G>A	uc011kbh.1	-	15	3685	c.3594C>T	c.(3592-3594)GTC>GTT	p.V1198V	GLI3_uc011kbg.1_Silent_p.V1139V	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1198					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						GCGGGTGGACGACCATGCCGT	0.667									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				10	95					0	0	1	0	0
GLI3	2737	broad.mit.edu	37	7	42005181	42005181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:42005181C>T	uc011kbh.1	-	15	3581	c.3490G>A	c.(3490-3492)GAA>AAA	p.E1164K	GLI3_uc011kbg.1_Missense_Mutation_p.E1105K	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1164					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						GAGCTGACTTCGTTCCACTGA	0.677									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				16	206					0	0	1	0	0
GLI3	2737	broad.mit.edu	37	7	42012094	42012094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:42012094G>A	uc011kbh.1	-	13	2036	c.1945C>T	c.(1945-1947)CGG>TGG	p.R649W	GLI3_uc011kbg.1_Missense_Mutation_p.R590W	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	649					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						GGTGGCGGCCGAGGATGGATG	0.612									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				9	100					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43484986	43484986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:43484986G>A	uc003tid.1	+	11	2820	c.2215G>A	c.(2215-2217)GAG>AAG	p.E739K	HECW1_uc011kbi.1_Missense_Mutation_p.E739K	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	739					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						GCAAGACGACGAGGAGGAGGA	0.642													14	94					0	0	1	0	0
BLVRA	644	broad.mit.edu	37	7	43827616	43827616	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:43827616C>T	uc003tir.2	+	3	209	c.126C>T	c.(124-126)TTC>TTT	p.F42F	BLVRA_uc010kxv.2_Silent_p.F42F	NM_000712	NP_000703	P53004	BIEA_HUMAN	biliverdin reductase A precursor	42					heme catabolic process	cytosol	biliverdin reductase activity|zinc ion binding			ovary(1)	1					NADH(DB00157)	TGATTGGCTTCGTGTCGAGGT	0.562													28	96					0	0	1	0	0
GCK	2645	broad.mit.edu	37	7	44189425	44189425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:44189425C>T	uc003tkl.2	-	6	1083	c.613G>A	c.(613-615)GAC>AAC	p.D205N	GCK_uc003tkj.1_Missense_Mutation_p.D204N|GCK_uc003tkk.1_Missense_Mutation_p.D206N	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	205	Substrate binding.				cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						GCCACCGTGTCATTCACCATT	0.572													38	475					0	0	1	0	0
GCK	2645	broad.mit.edu	37	7	44190569	44190569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:44190569C>T	uc003tkl.2	-	4	939	c.469G>A	c.(469-471)GAA>AAA	p.E157K	GCK_uc003tkj.1_Missense_Mutation_p.E156K|GCK_uc003tkk.1_Missense_Mutation_p.E158K	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	157					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						TCGATGTCTTCGTGCCTCACA	0.567													20	359					0	0	1	0	0
GCK	2645	broad.mit.edu	37	7	44191958	44191958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:44191958C>T	uc003tkl.2	-	3	745	c.275G>A	c.(274-276)GGA>GAA	p.G92E	GCK_uc003tkj.1_Missense_Mutation_p.G91E|GCK_uc003tkk.1_Missense_Mutation_p.G93E	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	92					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						CTCACCTTCTCCCACCTTCAC	0.587													33	549					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44578439	44578439	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:44578439C>T	uc003tlb.2	-	2	1613	c.1557G>A	c.(1555-1557)AAG>AAA	p.K519K	NPC1L1_uc003tlc.2_Silent_p.K519K|NPC1L1_uc011kbw.1_Silent_p.K519K|NPC1L1_uc003tld.2_Silent_p.K519K	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	519	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	GAAAATGGTCCTTCCAGTCGA	0.527													10	86					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44578779	44578779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:44578779C>T	uc003tlb.2	-	2	1273	c.1217G>A	c.(1216-1218)CGA>CAA	p.R406Q	NPC1L1_uc003tlc.2_Missense_Mutation_p.R406Q|NPC1L1_uc011kbw.1_Missense_Mutation_p.R406Q|NPC1L1_uc003tld.2_Missense_Mutation_p.R406Q	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	406	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	CTGGTTGGTTCGGAAGAAGGG	0.592													6	135					0	0	1	0	0
DDX56	54606	broad.mit.edu	37	7	44605609	44605609	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:44605609G>A	uc003tlg.2	-	14	2279	c.1636C>T	c.(1636-1638)CCC>TCC	p.P546S	DDX56_uc003tle.2_RNA|DDX56_uc003tlf.2_Missense_Mutation_p.P482S|DDX56_uc003tlh.2_RNA|DDX56_uc010kyg.2_Missense_Mutation_p.P506S	NM_019082	NP_061955	Q9NY93	DDX56_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	546					rRNA processing	nucleolus	ATP binding|ATP-dependent RNA helicase activity|identical protein binding|RNA binding			upper_aerodigestive_tract(1)	1						CCTCAGGAGGGCTTGGCTGTG	0.557											OREG0018039	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	40					0	0	1	0	0
DDX56	54606	broad.mit.edu	37	7	44612258	44612258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:44612258G>A	uc003tlg.2	-	4	1112	c.469C>T	c.(469-471)CGT>TGT	p.R157C	DDX56_uc003tle.2_RNA|DDX56_uc003tlf.2_Missense_Mutation_p.R93C|DDX56_uc003tlh.2_RNA|DDX56_uc010kyg.2_Missense_Mutation_p.R157C|DDX56_uc010kyh.1_RNA	NM_019082	NP_061955	Q9NY93	DDX56_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	157	Helicase ATP-binding.				rRNA processing	nucleolus	ATP binding|ATP-dependent RNA helicase activity|identical protein binding|RNA binding			upper_aerodigestive_tract(1)	1						AGGGAGTCACGAAGTTTCAGG	0.517													12	104					0	0	1	0	0
OGDH	4967	broad.mit.edu	37	7	44713474	44713474	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:44713474C>T	uc003tln.2	+	6	831	c.722C>T	c.(721-723)CCT>CTT	p.P241L	OGDH_uc003tlm.2_Missense_Mutation_p.P241L|OGDH_uc011kbx.1_Missense_Mutation_p.P237L|OGDH_uc011kby.1_Intron|OGDH_uc003tlp.2_Missense_Mutation_p.P252L|OGDH_uc011kbz.1_Intron|OGDH_uc003tlo.1_Missense_Mutation_p.P74L	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	241					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	TTTGAGACCCCTGGGATCATG	0.557													4	100					0	0	1	0	0
TBRG4	9238	broad.mit.edu	37	7	45148715	45148715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:45148715G>A	uc003tmv.2	-	2	248	c.122C>T	c.(121-123)TCC>TTC	p.S41F	TBRG4_uc003tmu.2_5'Flank|TBRG4_uc003tmw.2_Missense_Mutation_p.S41F|TBRG4_uc003tmx.2_Missense_Mutation_p.S41F|TBRG4_uc011kcd.1_Missense_Mutation_p.S52F	NM_004749	NP_004740	Q969Z0	TBRG4_HUMAN	cell cycle progression 2 protein isoform 1	41					apoptosis|cell cycle arrest|cellular respiration|G1 phase of mitotic cell cycle|positive regulation of cell proliferation	mitochondrion	ATP binding|protein binding|protein kinase activity				0						GGTGGCTGAGGAAGTCAGAGT	0.587													30	91					0	0	1	0	0
RAMP3	10268	broad.mit.edu	37	7	45222867	45222867	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:45222867C>T	uc003tnb.2	+	3	364	c.303C>T	c.(301-303)TTC>TTT	p.F101F	RAMP3_uc003tnc.2_Silent_p.F69F	NM_005856	NP_005847	O60896	RAMP3_HUMAN	receptor activity modifying protein 3 precursor	101	Extracellular (Potential).				intracellular protein transport|receptor-mediated endocytosis|regulation of G-protein coupled receptor protein signaling pathway	integral to plasma membrane|lysosome	protein transporter activity				0					Pramlintide(DB01278)	GGCAGTTCTTCTCCAACTGCA	0.607													21	93					0	0	1	0	0
RAMP3	10268	broad.mit.edu	37	7	45222924	45222924	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:45222924C>T	uc003tnb.2	+	3	421	c.360C>T	c.(358-360)ATC>ATT	p.I120I	RAMP3_uc003tnc.2_Silent_p.I88I	NM_005856	NP_005847	O60896	RAMP3_HUMAN	receptor activity modifying protein 3 precursor	120	Helical; (Potential).				intracellular protein transport|receptor-mediated endocytosis|regulation of G-protein coupled receptor protein signaling pathway	integral to plasma membrane|lysosome	protein transporter activity				0					Pramlintide(DB01278)	AGGTTCTCATCCCGCTGATCG	0.632													42	146					0	0	1	0	0
ADCY1	107	broad.mit.edu	37	7	45699681	45699681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:45699681G>A	uc003tne.3	+	7	1366	c.1348G>A	c.(1348-1350)GGG>AGG	p.G450R	ADCY1_uc003tnd.2_Missense_Mutation_p.G225R	NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	450	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GTGCTTGAATGGGGACTACGA	0.488													11	62					0	0	1	0	0
ADCY1	107	broad.mit.edu	37	7	45724598	45724598	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:45724598G>A	uc003tne.3	+	12	2022	c.2004G>A	c.(2002-2004)ACG>ACA	p.T668T		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	668					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GGTGCCTGACGATTCAGATTC	0.433													7	225					0	0	1	0	0
ADCY1	107	broad.mit.edu	37	7	45748058	45748058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:45748058G>A	uc003tne.3	+	18	2945	c.2927G>A	c.(2926-2928)CGA>CAA	p.R976Q		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	976	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TTTGTCCTCCGAGTTGGTATG	0.512													8	69					0	0	1	0	0
IGFBP1	3484	broad.mit.edu	37	7	45931652	45931652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:45931652G>A	uc003tnp.2	+	3	934	c.641G>A	c.(640-642)AGC>AAC	p.S214N	IGFBP1_uc003tno.3_Missense_Mutation_p.S214N|IGFBP1_uc010kyn.2_Intron	NM_000596	NP_000587	P08833	IBP1_HUMAN	insulin-like growth factor binding protein 1	214	Thyroglobulin type-1.					extracellular space	insulin-like growth factor binding			lung(1)	1						TTTTATCACAGCAGACAGGTA	0.483													6	33					0	0	1	0	0
TNS3	64759	broad.mit.edu	37	7	47342805	47342805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:47342805G>A	uc003tnv.2	-	22	3567	c.3200C>T	c.(3199-3201)TCC>TTC	p.S1067F	TNS3_uc003tnw.2_Missense_Mutation_p.S1067F	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	1067						focal adhesion	protein binding			ovary(4)	4						AAAGTTGTGGGACAGGAAGCC	0.672													5	33					0	0	1	0	0
TNS3	64759	broad.mit.edu	37	7	47408377	47408377	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:47408377G>A	uc003tnv.2	-	17	2233	c.1866C>T	c.(1864-1866)CTC>CTT	p.L622L	TNS3_uc003tnw.2_Silent_p.L622L	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	622						focal adhesion	protein binding			ovary(4)	4						GGGCCTGGACGAGGCCAGGAT	0.667													6	83					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47832323	47832323	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:47832323G>A	uc003tny.1	-	56	8428	c.8428C>T	c.(8428-8430)CTA>TTA	p.L2810L	C7orf69_uc003tnz.3_5'Flank|C7orf69_uc003toa.1_5'Flank	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2810	Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GGGAGTTGTAGGCTGTCGGAC	0.413													4	62					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47852820	47852820	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:47852820C>T	uc003tny.1	-	49	7245	c.7245G>A	c.(7243-7245)GAG>GAA	p.E2415E	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron|PKD1L1_uc003tob.2_Silent_p.E142E	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2415	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GGTAGGGGTTCTCAGGGCCTC	0.542													6	113					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47925290	47925290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:47925290G>A	uc003tny.1	-	18	3199	c.3199C>T	c.(3199-3201)CTC>TTC	p.L1067F		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1067	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TTACCAGAGAGGTGAGGGTCA	0.552													12	91					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47925486	47925486	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:47925486G>A	uc003tny.1	-	18	3003	c.3003C>T	c.(3001-3003)GCC>GCT	p.A1001A		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1001	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GAGCTGAAGTGGCAGGTTGGC	0.602													6	84					0	0	1	0	0
SUN3	256979	broad.mit.edu	37	7	48068524	48068524	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:48068524T>A	uc003tof.2	-	2	109	c.12A>T	c.(10-12)AAA>AAT	p.K4N	SUN3_uc003tog.2_Missense_Mutation_p.K4N|SUN3_uc011kcf.1_5'UTR	NM_152782	NP_689995	Q8TAQ9	SUN3_HUMAN	Sad1 and UNC84 domain containing 1	4						integral to membrane				central_nervous_system(1)	1						TTGCCTTTGTTTTTCCACTCA	0.433													5	39					0	0	1	0	0
C7orf57	136288	broad.mit.edu	37	7	48081078	48081078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:48081078C>T	uc003toh.3	+	3	415	c.203C>T	c.(202-204)TCG>TTG	p.S68L	C7orf57_uc003toi.3_5'UTR	NM_001100159	NP_001093629	Q8NEG2	CG057_HUMAN	hypothetical protein LOC136288	68										ovary(1)	1						GAAACAGATTCGGAATATGTG	0.597													4	7					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48267003	48267003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:48267003C>T	uc003toq.2	+	6	638	c.613C>T	c.(613-615)CTT>TTT	p.L205F	ABCA13_uc003top.2_Missense_Mutation_p.L205F|ABCA13_uc010kyr.2_5'UTR	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	205					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TGCAGTGAACCTTCTCCAGAC	0.353													3	19					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48311534	48311534	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:48311534C>T	uc003toq.2	+	17	2296	c.2271C>T	c.(2269-2271)TTC>TTT	p.F757F	ABCA13_uc010kyr.2_Silent_p.F260F	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	757					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTCCCAGTTTCCACAGCCTCC	0.373													6	10					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48349601	48349601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:48349601C>T	uc003toq.2	+	24	9404	c.9379C>T	c.(9379-9381)CAT>TAT	p.H3127Y	ABCA13_uc010kys.1_Missense_Mutation_p.H201Y	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3127					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GGAAATCCTTCATCTCCTGCT	0.473													10	92					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48556384	48556384	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:48556384C>T	uc003toq.2	+	52	13729	c.13704C>T	c.(13702-13704)TTC>TTT	p.F4568F	ABCA13_uc010kys.1_Silent_p.F1643F|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Silent_p.F298F	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4568	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						ACGTGGCTTTCATTTCCTATG	0.408													4	40					0	0	1	0	0
IKZF1	10320	broad.mit.edu	37	7	50450371	50450371	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:50450371G>A	uc003tow.3	+	6	723	c.555G>A	c.(553-555)AGG>AGA	p.R185R	IKZF1_uc003tox.3_Silent_p.R185R|IKZF1_uc003toy.3_Silent_p.R185R|IKZF1_uc011kck.1_Silent_p.R98R|IKZF1_uc003toz.3_Silent_p.R155R|IKZF1_uc010kyx.2_Intron	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	185	C2H2-type 3.|Required for both high-affinity DNA binding and pericentromeric heterochromatin localization (By similarity).				cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(74)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				GCCGCCGGAGGGACGCCCTCA	0.652			D		ALL								4	20					0	0	1	0	0
IKZF1	10320	broad.mit.edu	37	7	50459438	50459438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:50459438G>A	uc003tow.3	+	8	895	c.727G>A	c.(727-729)GAA>AAA	p.E243K	IKZF1_uc003tox.3_Missense_Mutation_p.E201K|IKZF1_uc003toy.3_Missense_Mutation_p.E201K|IKZF1_uc011kck.1_Missense_Mutation_p.E156K|IKZF1_uc003toz.3_Missense_Mutation_p.E213K|IKZF1_uc010kyx.2_Intron|IKZF1_uc003tpa.3_5'UTR	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	243					cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(74)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				CATTAAAGAAGAAACTAATCA	0.413			D		ALL								7	75					0	0	1	0	0
DDC	1644	broad.mit.edu	37	7	50537852	50537852	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:50537852C>T	uc003tpf.3	-	12	1145	c.1059G>A	c.(1057-1059)CTG>CTA	p.L353L	DDC_uc010kza.2_Silent_p.L268L|DDC_uc003tpg.3_Silent_p.L353L	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	353					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	ATCTTCTGCCCAGTGGTATCT	0.418													14	43					0	0	1	0	0
DDC	1644	broad.mit.edu	37	7	50563091	50563091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:50563091G>A	uc003tpf.3	-	9	987	c.901C>T	c.(901-903)CCC>TCC	p.P301S	DDC_uc010kza.2_Missense_Mutation_p.P216S|DDC_uc003tpg.3_Missense_Mutation_p.P301S	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	301					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	CATTTGTGGGGATTAAAGTTG	0.378													4	38					0	0	1	0	0
DDC	1644	broad.mit.edu	37	7	50596996	50596997	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:50596996_50596997CC>TT	uc003tpf.3	-	5	565_566	c.479_480GG>AA	c.(478-480)CGG>CAA	p.R160Q	DDC_uc010kza.2_Intron|DDC_uc003tpg.3_Missense_Mutation_p.R160Q	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	160	2.|2 X approximate tandem repeats.				cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	TCACTTTGGTCCGAGCGGCCAG	0.554													6	70					0	0	1	0	0
GRB10	2887	broad.mit.edu	37	7	50685828	50685828	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:50685828G>A	uc003tpi.2	-	7	817	c.786C>T	c.(784-786)TTC>TTT	p.F262F	GRB10_uc003tph.3_Silent_p.F204F|GRB10_uc003tpj.2_Silent_p.F262F|GRB10_uc003tpk.2_Silent_p.F262F|GRB10_uc010kzb.2_Silent_p.F204F|GRB10_uc003tpl.2_Silent_p.F256F|GRB10_uc003tpm.2_Silent_p.F204F|GRB10_uc003tpn.2_Silent_p.F204F	NM_005311	NP_005302	Q13322	GRB10_HUMAN	growth factor receptor-bound protein 10 isoform	262					insulin receptor signaling pathway|insulin receptor signaling pathway|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway	cytosol|plasma membrane	insulin receptor binding|insulin receptor binding|SH3/SH2 adaptor activity			lung(3)|ovary(2)|upper_aerodigestive_tract(1)	6	Glioma(55;0.08)|all_neural(89;0.245)					TCTGTTCTGGGAAGAAATTCT	0.383									Russell-Silver_syndrome				8	29					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103926	53103927	+	Missense_Mutation	DNP	GG	AA	AA	rs1689291		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:53103926_53103927GG>AA	uc003tpz.2	+	1	578_579	c.562_563GG>AA	c.(562-564)GGA>AAA	p.G188K		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	188											0						GTGCCCCAAGGGAAGCGCTAGG	0.579													8	67					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103997	53103997	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:53103997G>A	uc003tpz.2	+	1	649	c.633G>A	c.(631-633)CAG>CAA	p.Q211Q		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	211											0						GGAACCTGCAGCCCCGGCCCT	0.672													16	76					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53104231	53104231	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:53104231G>A	uc003tpz.2	+	1	883	c.867G>A	c.(865-867)CAG>CAA	p.Q289Q		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	289											0						AGGTCACCCAGTCTGCTGGCC	0.612													4	66					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55229227	55229227	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:55229227C>T	uc003tqk.2	+	13	1780	c.1534C>T	c.(1534-1536)CCC>TCC	p.P512S	EGFR_uc003tqi.2_Missense_Mutation_p.P512S|EGFR_uc003tqj.2_Missense_Mutation_p.P512S|EGFR_uc010kzg.1_Missense_Mutation_p.P467S|EGFR_uc011kco.1_Missense_Mutation_p.P459S|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_Intron	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	512	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	CTTGTGCTCCCCCGAGGGCTG	0.662		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			10	107					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55241649	55241649	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:55241649C>A	uc003tqk.2	+	18	2343	c.2097C>A	c.(2095-2097)CCC>CCA	p.P699P	EGFR_uc010kzg.1_Silent_p.P654P|EGFR_uc011kco.1_Silent_p.P646P	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	699	Cytoplasmic (Potential).|Important for dimerization, phosphorylation and activation.			P->A: Reduced phosphorylation.	activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.P699S(1)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	GAGAAGCTCCCAACCAAGCTC	0.542		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			5	124					0.217242	0.218401	1	1	0
EGFR	1956	broad.mit.edu	37	7	55268064	55268064	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:55268064C>T	uc003tqk.2	+	24	3150	c.2904C>T	c.(2902-2904)TTC>TTT	p.F968F	EGFR_uc010kzg.1_Silent_p.F923F|EGFR_uc011kco.1_Silent_p.F915F	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	968	Cytoplasmic (Potential).|Protein kinase.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.F968L(1)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TCATCGAATTCTCCAAAATGG	0.478		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			6	97					0	0	1	0	0
SEPT14	346288	broad.mit.edu	37	7	55914312	55914312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:55914312G>A	uc003tqz.2	-	3	190	c.73C>T	c.(73-75)CGT>TGT	p.R25C		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	25					cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			GTTAAACAACGAATATTATTT	0.284													10	50					0	0	1	0	0
LOC168474	168474	broad.mit.edu	37	7	64313015	64313015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:64313015C>T	uc003ttj.1	-	1	1164	c.612G>A	c.(610-612)ATG>ATA	p.M204I		NR_002789				SubName: Full=Selenophosphate synthetase 1; SubName: Full=Selenophosphate synthetase 1, isoform CRA_a;												0						CCATGTTCATCATCACCTCCT	0.478													12	111					0	0	1	0	0
ZNF273	10793	broad.mit.edu	37	7	64363779	64363779	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:64363779C>T	uc003tto.2	+	1	160	c.84C>T	c.(82-84)CTC>CTT	p.L28L	ZNF273_uc003ttl.2_Intron|ZNF273_uc003ttm.1_RNA|ZNF273_uc003ttn.2_5'UTR|ZNF273_uc003ttp.1_Intron	NM_021148	NP_066971	Q14593	ZN273_HUMAN	zinc finger protein 273	28					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(55;0.0295)|all_lung(88;0.0691)				CGCCAGGACTCCCTGGAAGCC	0.597													4	80					0	0	1	0	0
ASL	435	broad.mit.edu	37	7	65551587	65551587	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:65551587C>T	uc003tuo.2	+	7	573	c.462C>T	c.(460-462)CTC>CTT	p.L154L	ASL_uc011kdu.1_Silent_p.L154L|ASL_uc011kdv.1_Silent_p.L154L|ASL_uc003tup.2_Silent_p.L154L|ASL_uc003tur.2_Silent_p.L154L|ASL_uc003tuq.2_Silent_p.L154L	NM_000048	NP_000039	P04424	ARLY_HUMAN	argininosuccinate lyase isoform 1	154					arginine biosynthetic process via ornithine|arginine catabolic process|urea cycle	cytosol	argininosuccinate lyase activity			breast(2)	2					L-Arginine(DB00125)	GTGATGTTCTCTTCCCGGGGT	0.632													4	39					0	0	1	0	0
AUTS2	26053	broad.mit.edu	37	7	70227929	70227929	+	Silent	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:70227929G>T	uc003tvw.3	+	7	1559	c.816G>T	c.(814-816)TCG>TCT	p.S272S	AUTS2_uc003tvx.3_Silent_p.S272S	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	272										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		CCAAGATATCGGGTCTAGAGA	0.542													5	155					1	1	1	1	0
AUTS2	26053	broad.mit.edu	37	7	70255385	70255385	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:70255385C>T	uc003tvw.3	+	19	3926	c.3183C>T	c.(3181-3183)TTC>TTT	p.F1061F	AUTS2_uc003tvx.3_Silent_p.F1037F|AUTS2_uc011keg.1_Silent_p.F513F	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	1061										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		GAGAGCGCTTCCCGTACCCTT	0.622													4	20					0	0	1	0	0
CALN1	83698	broad.mit.edu	37	7	71275385	71275385	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:71275385G>A	uc003twa.3	-	5	995	c.468C>T	c.(466-468)ATC>ATT	p.I156I	CALN1_uc003twb.3_Silent_p.I198I|CALN1_uc003twc.3_Silent_p.I156I	NM_001017440	NP_001017440	Q9BXU9	CABP8_HUMAN	calneuron 1 isoform 2	156	Cytoplasmic (Potential).					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1		all_cancers(73;0.069)|Lung NSC(55;0.0658)|all_lung(88;0.0912)|all_epithelial(88;0.161)				CATTGATAATGATGTTCTCAA	0.507													12	106					0	0	1	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72334405	72334405	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:72334405G>A	uc010lal.1	-	1		c.5251C>T				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						CCTTTACCCCGGAGGATGCAG	0.478													6	37					0	0	1	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657514	72657514	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:72657514C>T	uc003txs.1	-	13	2398	c.1470G>A	c.(1468-1470)AAG>AAA	p.K490K	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						cgtatttcgtcttcaggaccg	0													22	199					0	0	1	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657540	72657540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:72657540C>T	uc003txs.1	-	13	2372	c.1444G>A	c.(1444-1446)GAC>AAC	p.D482N	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						cattgcaggtcgataacctcc	0													23	182					0	0	1	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657899	72657899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:72657899C>T	uc003txs.1	-	13	2013	c.1085G>A	c.(1084-1086)CGA>CAA	p.R362Q	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						ggccaggtctcggatccaatc	0													5	115					0	0	1	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72658311	72658311	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:72658311C>A	uc003txs.1	-	13	1601	c.673G>T	c.(673-675)GTA>TTA	p.V225L	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						gccacgcttactaatttcgac	0													5	48					0.000602214	0.000607971	1	1	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72658508	72658508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:72658508G>A	uc003txs.1	-	13	1404	c.476C>T	c.(475-477)TCT>TTT	p.S159F	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						gattgcgatagaatatgccac	0													5	40					0	0	1	0	0
NSUN5	55695	broad.mit.edu	37	7	72717957	72717957	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:72717957G>A	uc003txw.2	-	8	1047	c.1011C>T	c.(1009-1011)TTC>TTT	p.F337F	FKBP6_uc003twz.2_Intron|NSUN5_uc003txv.2_Silent_p.F337F|NSUN5_uc003txx.2_Silent_p.F299F|NSUN5_uc011kev.1_Silent_p.F337F	NM_018044	NP_060514	Q96P11	NSUN5_HUMAN	NOL1/NOP2/Sun domain family, member 5 isoform 2	337							methyltransferase activity				0		Lung NSC(55;0.163)				CTCGCTGCTGGAACCCTGCCA	0.627													12	32					0	0	1	0	0
TRIM50	135892	broad.mit.edu	37	7	72738546	72738546	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:72738546G>A	uc010lbd.1	-	2	365	c.240C>T	c.(238-240)CTC>CTT	p.L80L	FKBP6_uc003twz.2_Intron|TRIM50_uc003txy.1_Silent_p.L80L|TRIM50_uc003txz.1_Silent_p.L80L	NM_178125	NP_835226	Q86XT4	TRI50_HUMAN	tripartite motif protein 50A	80						cytoplasm|intracellular membrane-bounded organelle	ligase activity|zinc ion binding			skin(1)	1						GGTCCCCAGGGAGCCTCAGGG	0.687											OREG0018105	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	66					0	0	1	0	0
BAZ1B	9031	broad.mit.edu	37	7	72892254	72892254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:72892254G>A	uc003tyc.2	-	7	1882	c.1537C>T	c.(1537-1539)CGT>TGT	p.R513C		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	513	Lys-rich.				ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				TCTGGGAGACGAGCTCTATCT	0.438													6	59					0	0	1	0	0
WBSCR28	135886	broad.mit.edu	37	7	73279355	73279355	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:73279355C>T	uc003tzk.2	+	2	141	c.105C>T	c.(103-105)TTC>TTT	p.F35F	RFC2_uc011kfa.1_Intron|WBSCR28_uc003tzl.2_5'UTR	NM_182504	NP_872310	Q6UE05	WBS28_HUMAN	hypothetical protein LOC135886	35						integral to membrane				breast(1)	1		Lung NSC(55;0.159)				TCTATAATTTCCTGCTCCTCA	0.567													33	356					0	0	1	0	0
ELN	2006	broad.mit.edu	37	7	73462009	73462009	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:73462009C>T	uc003tzw.2	+	13	739	c.648C>T	c.(646-648)GGC>GGT	p.G216G	RFC2_uc011kfa.1_Intron|ELN_uc003tzm.1_Intron|ELN_uc011kfe.1_Silent_p.G185G|ELN_uc003tzn.2_Silent_p.G216G|ELN_uc003tzz.2_Intron|ELN_uc003tzo.2_Intron|ELN_uc003tzp.2_Silent_p.G172G|ELN_uc003tzq.2_Intron|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Silent_p.G216G|ELN_uc003tzt.2_Silent_p.G221G|ELN_uc003tzu.2_Silent_p.G221G|ELN_uc003tzv.2_Silent_p.G206G|ELN_uc003tzx.2_Silent_p.G206G|ELN_uc011kff.1_Silent_p.G216G|ELN_uc003tzy.2_Silent_p.G211G	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	216					blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	CTCCAGGTGGCTATGGACTGC	0.592			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						5	92					0	0	1	0	0
CLIP2	7461	broad.mit.edu	37	7	73731909	73731909	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:73731909C>T	uc003uam.2	+	2	360	c.33C>T	c.(31-33)GGC>GGT	p.G11G	CLIP2_uc003uan.2_Silent_p.G11G	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	11						microtubule associated complex				skin(3)	3						AGCCCCCCGGCCGTGGGGGGA	0.662													17	92					0	0	1	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73927255	73927255	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:73927255C>T	uc003uaq.2	+	3	612	c.219C>T	c.(217-219)TTC>TTT	p.F73F	GTF2IRD1_uc010lbq.2_Silent_p.F73F|GTF2IRD1_uc003uap.2_Silent_p.F73F|GTF2IRD1_uc003uar.1_Silent_p.F73F	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	73						nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						GGAGAATGTTCCTGAATGCCC	0.637													4	67					0	0	1	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73933740	73933740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:73933740C>T	uc003uaq.2	+	6	1000	c.607C>T	c.(607-609)CCA>TCA	p.P203S	GTF2IRD1_uc010lbq.2_Missense_Mutation_p.P235S|GTF2IRD1_uc003uap.2_Missense_Mutation_p.P203S|GTF2IRD1_uc003uar.1_Missense_Mutation_p.P203S	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	203	GTF2I-like 1.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						TTTACTCAGGCCACTTGAGGA	0.587													36	155					0	0	1	0	0
NCF1C	654817	broad.mit.edu	37	7	74582391	74582391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:74582391C>T	uc003ubv.2	-	4	356	c.274G>A	c.(274-276)GAC>AAC	p.D92N	NCF1C_uc011kfn.1_Missense_Mutation_p.D92N|NCF1C_uc011kfo.1_Missense_Mutation_p.D90N	NR_003187				RecName: Full=Putative neutrophil cytosol factor 1C;          Short=NCF-1C; AltName: Full=Putative SH3 and PX domain-containing protein 1C;												0						TTGAAGAAGTCAAGGAGGTGG	0.498													8	18					0	0	1	0	0
HIP1	3092	broad.mit.edu	37	7	75182875	75182875	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:75182875G>A	uc003uds.1	-	22	2213	c.2172C>T	c.(2170-2172)GCC>GCT	p.A724A	HIP1_uc011kfz.1_Silent_p.A601A	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	724					activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						ACTGCTTACAGGCCTCGGTCA	0.393			T	PDGFRB	CMML								9	36					0	0	1	0	0
ZP3	7784	broad.mit.edu	37	7	76054470	76054470	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:76054470G>A	uc003ufd.3	+	1	199	c.189G>A	c.(187-189)GGG>GGA	p.G63G	ZP3_uc003ufc.3_Silent_p.G12G	NM_001110354	NP_001103824	P21754	ZP3_HUMAN	zona pellucida glycoprotein 3 isoform 1	63	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|blastocyst formation|egg coat formation|humoral immune response mediated by circulating immunoglobulin|intracellular protein transport|negative regulation of binding of sperm to zona pellucida|negative regulation of transcription, DNA-dependent|oocyte development|phosphatidylinositol-mediated signaling|positive regulation of acrosomal vesicle exocytosis|positive regulation of acrosome reaction|positive regulation of antral ovarian follicle growth|positive regulation of calcium ion import|positive regulation of calcium ion transport via store-operated calcium channel activity|positive regulation of humoral immune response|positive regulation of interferon-gamma production|positive regulation of interleukin-4 production|positive regulation of leukocyte migration|positive regulation of ovarian follicle development|positive regulation of phosphatidylinositol biosynthetic process|positive regulation of protein kinase activity|positive regulation of protein kinase B signaling cascade|positive regulation of T cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of type IV hypersensitivity|protein kinase C signaling cascade	endoplasmic reticulum|extracellular space|Golgi apparatus|integral to membrane|multivesicular body|outer acrosomal membrane|perinuclear region of cytoplasm|plasma membrane|proteinaceous extracellular matrix	acrosin binding|manganese ion transmembrane transporter activity|receptor activity|sugar binding				0						TTGGCACCGGGAAGCTCATCA	0.587													4	23					0	0	1	0	0
ZP3	7784	broad.mit.edu	37	7	76062959	76062959	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:76062959C>T	uc003ufd.3	+	4	718	c.708C>T	c.(706-708)TTC>TTT	p.F236F	ZP3_uc003ufc.3_Silent_p.F185F|ZP3_uc003ufe.2_Silent_p.F144F	NM_001110354	NP_001103824	P21754	ZP3_HUMAN	zona pellucida glycoprotein 3 isoform 1	236	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|blastocyst formation|egg coat formation|humoral immune response mediated by circulating immunoglobulin|intracellular protein transport|negative regulation of binding of sperm to zona pellucida|negative regulation of transcription, DNA-dependent|oocyte development|phosphatidylinositol-mediated signaling|positive regulation of acrosomal vesicle exocytosis|positive regulation of acrosome reaction|positive regulation of antral ovarian follicle growth|positive regulation of calcium ion import|positive regulation of calcium ion transport via store-operated calcium channel activity|positive regulation of humoral immune response|positive regulation of interferon-gamma production|positive regulation of interleukin-4 production|positive regulation of leukocyte migration|positive regulation of ovarian follicle development|positive regulation of phosphatidylinositol biosynthetic process|positive regulation of protein kinase activity|positive regulation of protein kinase B signaling cascade|positive regulation of T cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of type IV hypersensitivity|protein kinase C signaling cascade	endoplasmic reticulum|extracellular space|Golgi apparatus|integral to membrane|multivesicular body|outer acrosomal membrane|perinuclear region of cytoplasm|plasma membrane|proteinaceous extracellular matrix	acrosin binding|manganese ion transmembrane transporter activity|receptor activity|sugar binding				0						TCGTGGACTTCCATGGGTGAG	0.493													5	74					0	0	1	0	0
DTX2	113878	broad.mit.edu	37	7	76111857	76111857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:76111857C>T	uc003uff.3	+	5	857	c.301C>T	c.(301-303)CCC>TCC	p.P101S	DTX2_uc011kgk.1_Missense_Mutation_p.P10S|DTX2_uc003ufg.3_Missense_Mutation_p.P101S|DTX2_uc003ufh.3_Missense_Mutation_p.P101S|DTX2_uc003ufj.3_Missense_Mutation_p.P101S	NM_020892	NP_065943	Q86UW9	DTX2_HUMAN	deltex 2 isoform a	101	WWE 2.				Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			ovary(1)|skin(1)	2						ACACCTGTTCCCCCAGCACTC	0.552													14	63					0	0	1	0	0
PION	54103	broad.mit.edu	37	7	76940676	76940676	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:76940676C>T	uc003ugf.2	-	31	2643	c.2564G>A	c.(2563-2565)TGA>TAA	p.*855*	PION_uc011kgo.1_Silent_p.*176*|PION_uc003ugd.2_Silent_p.*249*	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	855					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						TTTTCTTTTTCATAAGCCTAA	0.368													5	37					0	0	1	0	0
PION	54103	broad.mit.edu	37	7	76990179	76990179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:76990179C>T	uc003ugf.2	-	14	1068	c.989G>A	c.(988-990)GGG>GAG	p.G330E	PION_uc003ugg.1_Missense_Mutation_p.G115E	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	330					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						CATGTGTGACCCAACATTCTC	0.463													3	27					0	0	1	0	0
PION	54103	broad.mit.edu	37	7	76991953	76991953	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:76991953G>T	uc003ugf.2	-	13	975	c.896C>A	c.(895-897)CCG>CAG	p.P299Q	PION_uc003ugg.1_Missense_Mutation_p.P84Q	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	299					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						GGCACACTTCGGGCTGTAACA	0.313													3	9					1	1	1	1	0
MAGI2	9863	broad.mit.edu	37	7	77708372	77708372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:77708372C>T	uc003ugx.2	-	21	3852	c.3598G>A	c.(3598-3600)GAA>AAA	p.E1200K	MAGI2_uc003ugy.2_Missense_Mutation_p.E1186K|MAGI2_uc010ldx.1_Missense_Mutation_p.E793K	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	1200	PDZ 6.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				CTTGTGCTTTCCCCATTGATT	0.428													8	107					0	0	1	0	0
MAGI2	9863	broad.mit.edu	37	7	77973170	77973170	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:77973170C>T	uc003ugx.2	-	9	1587	c.1333G>A	c.(1333-1335)GAG>AAG	p.E445K	MAGI2_uc003ugy.2_Missense_Mutation_p.E445K|MAGI2_uc010ldx.1_Missense_Mutation_p.E54K|MAGI2_uc010ldy.1_Missense_Mutation_p.E54K|MAGI2_uc011kgr.1_Missense_Mutation_p.E277K|MAGI2_uc011kgs.1_Missense_Mutation_p.E282K	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	445	PDZ 2.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TCATCAGGCTCGTCTCCACCA	0.478													6	42					0	0	1	0	0
MAGI2	9863	broad.mit.edu	37	7	79082546	79082546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:79082546C>T	uc003ugx.2	-	1	345	c.91G>A	c.(91-93)GAA>AAA	p.E31K	MAGI2_uc003ugy.2_Missense_Mutation_p.E31K|uc010lea.1_5'Flank	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	31	PDZ 1.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				CCCTTCAGTTCAAAGCCCAGC	0.577													26	131					0	0	1	0	0
SEMA3C	10512	broad.mit.edu	37	7	80374244	80374244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:80374244C>T	uc003uhj.2	-	18	2784	c.2222G>A	c.(2221-2223)AGT>AAT	p.S741N	SEMA3C_uc011kgw.1_Missense_Mutation_p.S759N	NM_006379	NP_006370	Q99985	SEM3C_HUMAN	semaphorin 3C precursor	741	Arg/Lys-rich (basic).				immune response|response to drug	membrane	receptor activity			ovary(1)	1						CCTGTTTCTACTTTTCCGACT	0.403													3	20					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82545811	82545811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:82545811G>A	uc003uhx.2	-	7	11780	c.11491C>T	c.(11491-11493)CGT>TGT	p.R3831C	PCLO_uc003uhv.2_Missense_Mutation_p.R3831C|PCLO_uc010lec.2_Missense_Mutation_p.R796C	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3762					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATGTAATCACGATCCTCAGCT	0.473													5	7					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82595196	82595196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:82595196G>A	uc003uhx.2	-	4	4197	c.3908C>T	c.(3907-3909)CCT>CTT	p.P1303L	PCLO_uc003uhv.2_Missense_Mutation_p.P1303L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1242					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TAAACTCTGAGGTGTGCCAGA	0.448													9	35					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82764666	82764666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:82764666G>A	uc003uhx.2	-	3	2489	c.2200C>T	c.(2200-2202)CCT>TCT	p.P734S	PCLO_uc003uhv.2_Missense_Mutation_p.P734S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	680	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCTTTGGGAGGGGCTGGCTTG	0.527													11	55					0	0	1	0	0
SEMA3A	10371	broad.mit.edu	37	7	83636697	83636697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:83636697C>T	uc003uhz.2	-	10	1427	c.1112G>A	c.(1111-1113)GGA>GAA	p.G371E		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	371	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						GGGGACTCTTCCTTGATAAGG	0.438													6	72					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86415789	86415789	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:86415789C>T	uc003uid.2	+	3	1780	c.681C>T	c.(679-681)ATC>ATT	p.I227I	GRM3_uc010lef.2_Silent_p.I225I|GRM3_uc010leg.2_Silent_p.I99I|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	227	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	AGACAGGGATCGAGGCCTTCG	0.597													12	39					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87138735	87138735	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:87138735G>A	uc003uiz.1	-	27	3763	c.3345C>T	c.(3343-3345)ATC>ATT	p.I1115I	ABCB1_uc011khc.1_Silent_p.I1051I	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	1115	Cytoplasmic (Potential).|ABC transporter 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CCTGGGACACGATGCCCAGGT	0.517													7	50					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87170678	87170678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:87170678G>A	uc003uiz.1	-	19	2732	c.2314C>T	c.(2314-2316)CTT>TTT	p.L772F	ABCB1_uc011khc.1_Missense_Mutation_p.L708F	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	772	Helical; (Potential).|ABC transmembrane type-1 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TTTACCTGAAGGAAAAATGTA	0.299													3	14					0	0	1	0	0
CLDN12	9069	broad.mit.edu	37	7	90042439	90042439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:90042439C>T	uc003ukp.2	+	5	1085	c.449C>T	c.(448-450)CCA>CTA	p.P150L	CLDN12_uc003ukq.2_Missense_Mutation_p.P150L|CLDN12_uc010leq.2_Missense_Mutation_p.P150L|CLDN12_uc003ukr.2_Missense_Mutation_p.P150L|CLDN12_uc003uks.2_Missense_Mutation_p.P150L	NM_012129	NP_036261	P56749	CLD12_HUMAN	claudin 12	150	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						AGCCTCTCCCCATCTATCTGG	0.478													5	60					0	0	1	0	0
CLDN12	9069	broad.mit.edu	37	7	90042626	90042626	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:90042626C>T	uc003ukp.2	+	5	1272	c.636C>T	c.(634-636)TCC>TCT	p.S212S	CLDN12_uc003ukq.2_Silent_p.S212S|CLDN12_uc010leq.2_Silent_p.S212S|CLDN12_uc003ukr.2_Silent_p.S212S|CLDN12_uc003uks.2_Silent_p.S212S	NM_012129	NP_036261	P56749	CLD12_HUMAN	claudin 12	212	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						CATTGTACTCCCATCCACCCA	0.438													6	114					0	0	1	0	0
MTERF	7978	broad.mit.edu	37	7	91503562	91503562	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:91503562G>A	uc003ulb.1	-	2	590	c.546C>T	c.(544-546)TTC>TTT	p.F182F	MTERF_uc010let.1_Intron|MTERF_uc003ulc.1_Silent_p.F182F|MTERF_uc011khm.1_Silent_p.F162F|MTERF_uc010leu.1_Silent_p.F162F	NM_006980	NP_008911	Q99551	MTERF_HUMAN	mitochondrial transcription termination factor	182					DNA geometric change|regulation of transcription, DNA-dependent|termination of mitochondrial transcription	mitochondrial nucleoid	double-stranded DNA binding				0	all_cancers(62;2.28e-09)|all_epithelial(64;1.07e-07)|Breast(17;0.00371)|all_hematologic(106;0.091)|all_lung(186;0.178)|Lung NSC(181;0.235)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.0993)|Kidney(17;0.118)|Epithelial(20;0.136)|LUSC - Lung squamous cell carcinoma(200;0.176)			CTGAGTAGAGGAACTTTATAT	0.378													4	25					0	0	1	0	0
KRIT1	889	broad.mit.edu	37	7	91843226	91843226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:91843226G>A	uc003ulq.1	-	14	1969	c.1798C>T	c.(1798-1800)CGC>TGC	p.R600C	KRIT1_uc010lev.1_Missense_Mutation_p.R357C|KRIT1_uc003ulr.1_Missense_Mutation_p.R600C|KRIT1_uc003uls.1_Missense_Mutation_p.R600C|KRIT1_uc003ult.1_Missense_Mutation_p.R552C|KRIT1_uc003ulu.1_Missense_Mutation_p.R600C|KRIT1_uc003ulv.1_Missense_Mutation_p.R600C	NM_194456	NP_919438	O00522	KRIT1_HUMAN	krev interaction trapped 1 isoform 1	600	Required for RAP1A binding.|FERM.				angiogenesis|cell redox homeostasis|negative regulation of angiogenesis|negative regulation of endothelial cell apoptosis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|regulation of establishment of cell polarity|small GTPase mediated signal transduction	cell-cell junction|cytoskeleton	protein binding|small GTPase regulator activity			ovary(2)|lung(1)	3	all_cancers(62;1.04e-09)|all_epithelial(64;5.75e-09)|Breast(17;0.00206)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TGAAGTATGCGATTTGTCCAG	0.323									Familial_Cerebral_Cavernous_Angioma				4	56					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92760565	92760565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:92760565C>T	uc003umh.1	-	5	5936	c.4720G>A	c.(4720-4722)GAA>AAA	p.E1574K	SAMD9L_uc003umj.1_Missense_Mutation_p.E1574K|SAMD9L_uc003umi.1_Missense_Mutation_p.E1574K|SAMD9L_uc010lfb.1_Missense_Mutation_p.E1574K|SAMD9L_uc003umk.1_Missense_Mutation_p.E1574K|SAMD9L_uc010lfc.1_Missense_Mutation_p.E1574K|SAMD9L_uc010lfd.1_Missense_Mutation_p.E1574K|SAMD9L_uc011khx.1_3'UTR	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1574										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			AGAGGGCCTTCAATGGAAAAT	0.323													3	7					0	0	1	0	0
CCDC132	55610	broad.mit.edu	37	7	92869203	92869203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:92869203C>T	uc003umo.2	+	2	186	c.58C>T	c.(58-60)CTC>TTC	p.L20F	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_5'UTR|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Missense_Mutation_p.L20F|CCDC132_uc003umn.2_Missense_Mutation_p.L20F	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	20											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			TCAAGAAAGCCTCAGTGATCT	0.378													11	69					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94033889	94033889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:94033889C>T	uc003ung.1	+	7	772	c.301C>T	c.(301-303)CCA>TCA	p.P101S	COL1A2_uc011kib.1_Missense_Mutation_p.P101S|COL1A2_uc010lfh.1_5'Flank	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	101					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	ACCTAGAGGCCCACCTGGTGC	0.428										HNSCC(75;0.22)			6	25					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94054921	94054921	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:94054921G>A	uc003ung.1	+	43	3253	c.2782_splice	c.e43-1	p.G928_splice	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor						axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TGTCTTCACAGGGCAACCCTG	0.488										HNSCC(75;0.22)			4	25					0	0	1	0	0
PDK4	5166	broad.mit.edu	37	7	95216834	95216834	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:95216834C>T	uc003uoa.2	-	9	1197	c.877G>A	c.(877-879)GAC>AAC	p.D293N	PDK4_uc003unz.2_Missense_Mutation_p.D81N	NM_002612	NP_002603	Q16654	PDK4_HUMAN	pyruvate dehydrogenase kinase 4 precursor	293	Histidine kinase.	ATP.			glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity				0	all_cancers(62;1.06e-10)|all_epithelial(64;1.04e-09)|Lung NSC(181;0.128)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0151)			CCTCCTCTGTCTGAAATCTAA	0.393													3	33					0	0	1	0	0
LMTK2	22853	broad.mit.edu	37	7	97770803	97770803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:97770803C>T	uc003upd.1	+	3	619	c.326C>T	c.(325-327)TCA>TTA	p.S109L		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	109					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					TTCACACTTTCAGTACCAAAT	0.428													9	89					0	0	1	0	0
LMTK2	22853	broad.mit.edu	37	7	97821733	97821733	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:97821733C>T	uc003upd.1	+	11	2249	c.1956C>T	c.(1954-1956)TTC>TTT	p.F652F		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	652					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					AAAAAATATTCGACTTAATGG	0.433													15	54					0	0	1	0	0
LMTK2	22853	broad.mit.edu	37	7	97822641	97822641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:97822641C>T	uc003upd.1	+	11	3157	c.2864C>T	c.(2863-2865)TCT>TTT	p.S955F		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	955					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					CAGCTCAATTCTAAAGACGCA	0.502													14	104					0	0	1	0	0
LMTK2	22853	broad.mit.edu	37	7	97833005	97833005	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:97833005C>T	uc003upd.1	+	12	4520	c.4227C>T	c.(4225-4227)TCC>TCT	p.S1409S		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	1409					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					CCGAAAGCTCCACCGACGAAG	0.522													6	21					0	0	1	0	0
TMEM130	222865	broad.mit.edu	37	7	98445812	98445812	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:98445812C>T	uc003upo.2	-	8	1364	c.1175G>A	c.(1174-1176)GGG>GAG	p.G392E	TMEM130_uc011kiq.1_Missense_Mutation_p.G361E|TMEM130_uc011kir.1_Missense_Mutation_p.G380E|TMEM130_uc003upn.2_Missense_Mutation_p.G278E	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	392	Cytoplasmic (Potential).					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GCACCTGACCCCAGAGGGTGG	0.562													5	34					0	0	1	0	0
TMEM130	222865	broad.mit.edu	37	7	98453715	98453715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:98453715C>T	uc003upo.2	-	4	832	c.643G>A	c.(643-645)GAA>AAA	p.E215K	TMEM130_uc011kiq.1_Missense_Mutation_p.E196K|TMEM130_uc011kir.1_Missense_Mutation_p.E215K|TMEM130_uc003upn.2_Missense_Mutation_p.E113K	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	215	Extracellular (Potential).|PKD.					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TCCACCTCTTCCCACTCCGCC	0.577													4	50					0	0	1	0	0
TMEM130	222865	broad.mit.edu	37	7	98460784	98460784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:98460784C>T	uc003upo.2	-	2	514	c.325G>A	c.(325-327)GTC>ATC	p.V109I	TMEM130_uc011kiq.1_Missense_Mutation_p.V90I|TMEM130_uc011kir.1_Missense_Mutation_p.V109I|TMEM130_uc003upn.2_Intron	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	109	Extracellular (Potential).					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GCGGCAGTGACCCAGACAGAG	0.622													5	72					0	0	1	0	0
TRRAP	8295	broad.mit.edu	37	7	98576467	98576467	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:98576467C>T	uc003upp.2	+	57	8762	c.8553C>T	c.(8551-8553)CTC>CTT	p.L2851L	TRRAP_uc011kis.1_Silent_p.L2833L|TRRAP_uc003upr.2_Silent_p.L2550L	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2851	FAT.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ACCCCTACCTCGTCCTGGAGT	0.627													19	104					0	0	1	0	0
TRRAP	8295	broad.mit.edu	37	7	98608764	98608764	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:98608764C>T	uc003upp.2	+	70	11195	c.10986C>T	c.(10984-10986)GCC>GCT	p.A3662A	TRRAP_uc011kis.1_Silent_p.A3633A|TRRAP_uc003upr.2_Silent_p.A3368A|TRRAP_uc003ups.2_5'Flank	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3662	PI3K/PI4K.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TCCCCAATGCCACGGACTACT	0.552													12	54					0	0	1	0	0
ARPC1B	10095	broad.mit.edu	37	7	98984364	98984364	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:98984364A>G	uc003upz.2	+	3	210	c.121A>G	c.(121-123)AAA>GAA	p.K41E	ARPC1A_uc011kit.1_RNA|ARPC1B_uc003uqa.2_Missense_Mutation_p.K41E|ARPC1B_uc003uqb.2_Missense_Mutation_p.K41E|ARPC1B_uc003uqc.2_Missense_Mutation_p.K41E	NM_005720	NP_005711	O15143	ARC1B_HUMAN	actin related protein 2/3 complex subunit 1B	41	WD 1.				cellular component movement|regulation of actin filament polymerization	Arp2/3 protein complex|cytoplasm	actin binding|structural constituent of cytoskeleton				0	all_cancers(62;3.49e-09)|all_epithelial(64;2.57e-10)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			GAGCGGTGCCAAATGGACCAA	0.572													17	99					0	0	1	0	0
COPS6	10980	broad.mit.edu	37	7	99688740	99688740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:99688740G>A	uc003usu.2	+	7	645	c.614G>A	c.(613-615)CGA>CAA	p.R205Q		NM_006833	NP_006824	Q7L5N1	CSN6_HUMAN	COP9 signalosome subunit 6	205					cullin deneddylation|interspecies interaction between organisms	cytoplasm|signalosome	protein binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			CACGTAGCCCGAATGACAGCA	0.562													15	52					0	0	1	0	0
STAG3	10734	broad.mit.edu	37	7	99808770	99808770	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:99808770G>A	uc003utx.1	+	30	3530	c.3375G>A	c.(3373-3375)ATG>ATA	p.M1125I	STAG3_uc011kjk.1_Missense_Mutation_p.M1067I|GATS_uc003uty.3_Intron|GATS_uc003utz.3_Intron|GATS_uc003uua.3_Intron|GATS_uc010lgt.2_Intron|STAG3_uc003uub.1_Missense_Mutation_p.M349I	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	1125					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TGAAAGAGATGGAGGAAGAAG	0.587													5	48					0	0	1	0	0
STAG3	10734	broad.mit.edu	37	7	99808772	99808772	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:99808772A>T	uc003utx.1	+	30	3532	c.3377A>T	c.(3376-3378)GAG>GTG	p.E1126V	STAG3_uc011kjk.1_Missense_Mutation_p.E1068V|GATS_uc003uty.3_Intron|GATS_uc003utz.3_Intron|GATS_uc003uua.3_Intron|GATS_uc010lgt.2_Intron|STAG3_uc003uub.1_Missense_Mutation_p.E350V	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	1126					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AAAGAGATGGAGGAAGAAGAT	0.577													5	49					0	0	1	0	0
ZCWPW1	55063	broad.mit.edu	37	7	99999569	99999569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:99999569G>A	uc003uut.2	-	17	1815	c.1567C>T	c.(1567-1569)CCT>TCT	p.P523S	ZCWPW1_uc011kjq.1_Missense_Mutation_p.P403S|ZCWPW1_uc003uur.2_Intron|ZCWPW1_uc003uus.2_Intron|ZCWPW1_uc011kjr.1_Intron|ZCWPW1_uc011kjp.1_RNA	NM_017984	NP_060454	Q9H0M4	ZCPW1_HUMAN	zinc finger, CW type with PWWP domain 1	523							zinc ion binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTGGGTGCAGGAGGAGCTGTG	0.547													8	118					0	0	1	0	0
C7orf51	222950	broad.mit.edu	37	7	100082951	100082951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100082951G>A	uc003uvd.1	+	2	176	c.17G>A	c.(16-18)CGA>CAA	p.R6Q	C7orf51_uc003uve.1_5'Flank	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	6										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTCCTCTACCGAAAAACCAAG	0.672													3	10					0	0	1	0	0
C7orf51	222950	broad.mit.edu	37	7	100086093	100086093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100086093C>T	uc003uvd.1	+	4	908	c.749C>T	c.(748-750)GCC>GTC	p.A250V	C7orf51_uc003uve.1_Missense_Mutation_p.A32V	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	250										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CCAGCGGGCGCCGACTCGGAC	0.652													4	77					0	0	1	0	0
C7orf51	222950	broad.mit.edu	37	7	100086274	100086274	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100086274G>A	uc003uvd.1	+	4	1089	c.930G>A	c.(928-930)CGG>CGA	p.R310R	C7orf51_uc003uve.1_Silent_p.R92R	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	310	Pro-rich.									skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TCCCGAGCCGGAGGGACGGGA	0.682													6	80					0	0	1	0	0
MOSPD3	64598	broad.mit.edu	37	7	100212532	100212532	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100212532T>A	uc003uvq.2	+	5	756	c.554T>A	c.(553-555)TTG>TAG	p.L185*	MOSPD3_uc003uvr.2_Nonsense_Mutation_p.L185*|MOSPD3_uc003uvs.2_Nonsense_Mutation_p.L185*|MOSPD3_uc003uvt.2_Nonsense_Mutation_p.L175*	NM_001040097	NP_001035186	O75425	MSPD3_HUMAN	motile sperm domain containing 3 isoform a	185	Helical; (Potential).					integral to membrane	structural molecule activity			ovary(2)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					CTCCTCTTCTTGCTGACGGGG	0.622													26	73					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100359971	100359971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100359971G>A	uc003uwj.2	+	20	4141	c.3976G>A	c.(3976-3978)GAG>AAG	p.E1326K	ZAN_uc003uwk.2_Missense_Mutation_p.E1326K|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kkd.1_5'UTR	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1326	VWFD 1.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GGACCAGGACGAGGACCAGGA	0.522													4	31					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100383691	100383691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100383691G>A	uc003uwj.2	+	38	7072	c.6907G>A	c.(6907-6909)GAC>AAC	p.D2303N	ZAN_uc003uwk.2_Missense_Mutation_p.D2303N|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Missense_Mutation_p.D353N	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2303	VWFC 4.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TCAGTGCGGGGACTTCCGATG	0.582													6	74					0	0	1	0	0
EPHB4	2050	broad.mit.edu	37	7	100410379	100410379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100410379G>A	uc003uwn.1	-	12	2599	c.2108C>T	c.(2107-2109)TCC>TTC	p.S703F	EPHB4_uc003uwm.1_Missense_Mutation_p.S610F|EPHB4_uc010lhj.1_Missense_Mutation_p.S703F	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	703	Cytoplasmic (Potential).|Protein kinase.				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					CCGCAGGAAGGAGTCCAGGGC	0.607													5	40					0	0	1	0	0
SLC12A9	56996	broad.mit.edu	37	7	100451836	100451836	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100451836C>T	uc003uwp.2	+	2	159	c.17C>T	c.(16-18)TCA>TTA	p.S6L	SLC12A9_uc003uwo.1_Missense_Mutation_p.S6L|SLC12A9_uc003uwq.2_Missense_Mutation_p.S6L|SLC12A9_uc011kki.1_Intron|SLC12A9_uc003uwr.2_5'Flank|SLC12A9_uc003uws.2_5'Flank|SLC12A9_uc003uwt.2_5'Flank	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	6	Cytoplasmic (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					AGCGAGAGCTCACCTCTGCTG	0.632													6	57					0	0	1	0	0
ACHE	43	broad.mit.edu	37	7	100490067	100490067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100490067C>T	uc003uxd.2	-	2	1597	c.1441G>A	c.(1441-1443)GAG>AAG	p.E481K	UFSP1_uc003uxc.3_5'Flank|ACHE_uc003uxe.2_Missense_Mutation_p.E481K|ACHE_uc003uxf.2_Missense_Mutation_p.E481K|ACHE_uc003uxg.2_Missense_Mutation_p.E481K|ACHE_uc003uxh.2_Missense_Mutation_p.E393K|ACHE_uc003uxi.2_Missense_Mutation_p.E481K	NM_000665	NP_000656	P22303	ACES_HUMAN	acetylcholinesterase isoform E4-E6 precursor	481					acetylcholine catabolic process in synaptic cleft|amyloid precursor protein metabolic process|cell adhesion|cell proliferation|choline metabolic process|DNA replication|muscle organ development|neurotransmitter biosynthetic process|osteoblast development|positive regulation of protein secretion|regulation of axonogenesis|regulation of dendrite morphogenesis|response to wounding|synapse assembly	anchored to membrane|axon|basal lamina|cell junction|cell surface|dendrite|endoplasmic reticulum lumen|extracellular space|Golgi apparatus|neuromuscular junction|nucleus|perinuclear region of cytoplasm|postsynaptic membrane|presynaptic membrane|synaptic cleft	acetylcholine binding|acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|collagen binding|laminin-1 binding|protein homodimerization activity|serine hydrolase activity			skin(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Ambenonium(DB01122)|Atropine(DB00572)|Choline(DB00122)|Decamethonium(DB01245)|Demecarium bromide(DB00944)|Donepezil(DB00843)|Edrophonium(DB01010)|Ephedrine(DB01364)|Galantamine(DB00674)|Gallamine Triethiodide(DB00483)|Isoflurophate(DB00677)|Neostigmine(DB01400)|Physostigmine(DB00981)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Tacrine(DB00382)|Tubocurarine(DB01199)	AACTCGATCTCGTAGCCGTGG	0.612													8	51					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100675124	100675124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100675124G>A	uc003uxp.1	+	3	480	c.427G>A	c.(427-429)GAA>AAA	p.E143K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	143	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TACAACTCCTGAAGGCACCGA	0.473													10	83					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100676679	100676679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100676679C>T	uc003uxp.1	+	3	2035	c.1982C>T	c.(1981-1983)ACC>ATC	p.T661I	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	661	Extracellular (Potential).|9.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACTCCTGTGACCACTTCAACT	0.478													22	221					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100680830	100680830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100680830C>T	uc003uxp.1	+	3	6186	c.6133C>T	c.(6133-6135)CCA>TCA	p.P2045S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2045	Extracellular (Potential).|32.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACGGACCACTCCATTAGCAGG	0.502													23	75					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100681655	100681655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100681655C>T	uc003uxp.1	+	3	7011	c.6958C>T	c.(6958-6960)CCT>TCT	p.P2320S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2320	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|37.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CAGTTCACCTCCTCCCACTGC	0.502													37	134					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100682121	100682121	+	Missense_Mutation	SNP	C	T	T	rs141900729		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100682121C>T	uc003uxp.1	+	3	7477	c.7424C>T	c.(7423-7425)ACC>ATC	p.T2475I	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2475	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|39.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAGGCTGGCACCCTTTCCACA	0.522													31	182					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100683577	100683577	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100683577C>T	uc003uxp.1	+	3	8933	c.8880C>T	c.(8878-8880)ACC>ACT	p.T2960T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2960	Extracellular (Potential).|Ser-rich.|48.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CACCTGTCACCACTTCTGCTG	0.488													32	146					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100684421	100684421	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100684421C>T	uc003uxp.1	+	3	9777	c.9724C>T	c.(9724-9726)CTT>TTT	p.L3242F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3242	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|52.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GGCTAGCATCCTTTCAACAAC	0.502													26	165					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100686128	100686128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100686128G>A	uc003uxp.1	+	3	11484	c.11431G>A	c.(11431-11433)GAA>AAA	p.E3811K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3811	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTACGAGTGAAAGAAGCAC	0.478													4	42					0	0	1	0	0
SERPINE1	5054	broad.mit.edu	37	7	100777017	100777017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100777017G>A	uc003uxt.2	+	5	890	c.742G>A	c.(742-744)GAA>AAA	p.E248K	SERPINE1_uc011kkj.1_Missense_Mutation_p.E233K|SERPINE1_uc003uxu.1_Missense_Mutation_p.E79K	NM_000602	NP_000593	P05121	PAI1_HUMAN	plasminogen activator inhibitor-1 isoform 1	248					angiogenesis|cellular response to chemical stimulus|cellular response to lipopolysaccharide|chronological cell aging|defense response to Gram-negative bacterium|fibrinolysis|negative regulation of apoptosis|negative regulation of cell adhesion mediated by integrin|negative regulation of fibrinolysis|negative regulation of plasminogen activation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell-matrix adhesion|negative regulation of vascular wound healing|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of interleukin-8 production|positive regulation of leukotriene production involved in inflammatory response|positive regulation of monocyte chemotaxis|positive regulation of receptor-mediated endocytosis|regulation of receptor activity	extracellular matrix|extracellular space|plasma membrane|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)				Atorvastatin(DB01076)|Dimethyl sulfoxide(DB01093)|Drotrecogin alfa(DB00055)|Simvastatin(DB00641)|Tenecteplase(DB00031)|Troglitazone(DB00197)|Urokinase(DB00013)	CGACATCCTGGAACTGCCCTA	0.552													5	60					0	0	1	0	0
MOGAT3	346606	broad.mit.edu	37	7	100841579	100841579	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100841579C>T	uc003uyc.2	-	5	728	c.561G>A	c.(559-561)GTG>GTA	p.V187V	MOGAT3_uc010lhr.2_Silent_p.V187V	NM_178176	NP_835470	Q86VF5	MOGT3_HUMAN	monoacylglycerol O-acyltransferase 3	187					glycerol metabolic process|lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity|diacylglycerol O-acyltransferase activity			ovary(2)	2	Lung NSC(181;0.168)|all_lung(186;0.215)					CCATGATGACCACGGCCTGCC	0.652													6	38					0	0	1	0	0
ZNHIT1	10467	broad.mit.edu	37	7	100865982	100865982	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:100865982C>T	uc003uye.2	+	2	612	c.120C>T	c.(118-120)TTC>TTT	p.F40F	ZNHIT1_uc003uyf.2_RNA	NM_006349	NP_006340	O43257	ZNHI1_HUMAN	zinc finger, HIT domain containing 1	40							metal ion binding|protein binding			large_intestine(1)	1	Lung NSC(181;0.168)|all_lung(186;0.215)					ATGACAACTTCCAGGATGACC	0.672													7	93					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101845319	101845319	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:101845319C>T	uc003uyx.3	+	18	2780	c.2742C>T	c.(2740-2742)TCC>TCT	p.S914S	CUX1_uc003uys.3_Silent_p.S925S|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	914					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						TGCCATCCTCCCCGATCGTGC	0.657													10	80					0	0	1	0	0
FBXL13	222235	broad.mit.edu	37	7	102553616	102553616	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:102553616A>G	uc003vaq.2	-	11	1352	c.925T>C	c.(925-927)TTC>CTC	p.F309L	FBXL13_uc010liq.1_Missense_Mutation_p.F124L|FBXL13_uc010lir.1_Missense_Mutation_p.F309L|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.F309L|LRRC17_uc003vat.2_Intron|LRRC17_uc003vau.2_Intron	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	309	LRR 4.										0						TTGTCTGTGAACCGTCTGCAA	0.438													5	30					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103234861	103234861	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:103234861C>T	uc003vca.2	-	26	3778	c.3618G>A	c.(3616-3618)GGG>GGA	p.G1206G	RELN_uc010liz.2_Silent_p.G1206G	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1206					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CATAGTCCTCCCCTGAGAACA	0.483													6	43					0	0	1	0	0
SRPK2	6733	broad.mit.edu	37	7	104773269	104773269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:104773269G>A	uc003vct.2	-	12	1875	c.1688C>T	c.(1687-1689)ACC>ATC	p.T563I	SRPK2_uc003vcu.2_Missense_Mutation_p.T563I|SRPK2_uc003vcv.2_Missense_Mutation_p.T574I|SRPK2_uc003vcs.1_RNA	NM_182691	NP_872633	P78362	SRPK2_HUMAN	serine/arginine-rich protein-specific kinase 2	563	Protein kinase.				angiogenesis|cell differentiation|intracellular protein kinase cascade|negative regulation of viral genome replication|nuclear speck organization|positive regulation of cell cycle|positive regulation of cell proliferation|positive regulation of gene expression|positive regulation of neuron apoptosis|positive regulation of viral genome replication|spliceosome assembly	cytoplasm|nucleolus	14-3-3 protein binding|ATP binding|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GTCCGCAGGGGTGCTGTACCC	0.552													4	4					0	0	1	0	0
CDHR3	222256	broad.mit.edu	37	7	105653376	105653376	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:105653376G>A	uc003vdl.3	+	9	1231	c.1123G>A	c.(1123-1125)GAC>AAC	p.D375N	CDHR3_uc003vdk.2_Missense_Mutation_p.D23N|CDHR3_uc011kls.1_RNA|CDHR3_uc003vdm.3_Missense_Mutation_p.D362N|CDHR3_uc011klt.1_Missense_Mutation_p.D287N|CDHR3_uc003vdn.2_Missense_Mutation_p.D92N	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	375	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CTTTGATGATGACAGTGAGGC	0.483													33	142					0	0	1	0	0
COG5	10466	broad.mit.edu	37	7	106924055	106924055	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:106924055G>A	uc003ved.2	-	13	2054	c.1529C>T	c.(1528-1530)TCC>TTC	p.S510F	COG5_uc003vec.2_Missense_Mutation_p.S510F|COG5_uc003vee.2_Missense_Mutation_p.S510F	NM_181733	NP_859422	Q9UP83	COG5_HUMAN	component of oligomeric golgi complex 5 isoform	510					intra-Golgi vesicle-mediated transport|protein transport	cytosol|Golgi membrane|Golgi transport complex|nucleus	protein binding			central_nervous_system(2)|skin(2)	4						TTCATCAGAGGAAGGAGGATT	0.378													6	41					0	0	1	0	0
CBLL1	79872	broad.mit.edu	37	7	107393942	107393942	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:107393942T>A	uc003veq.2	+	3	598	c.268T>A	c.(268-270)TTT>ATT	p.F90I	CBLL1_uc011kme.1_5'UTR|CBLL1_uc011kmf.1_Missense_Mutation_p.F89I	NM_024814	NP_079090	Q75N03	HAKAI_HUMAN	Cas-Br-M (murine) ecotropic retroviral	90					cell-cell adhesion|negative regulation of cell adhesion|positive regulation of cell migration|positive regulation of endocytosis		protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|skin(2)|lung(1)	5						TGGACACCTTTTTTGGGACTT	0.254													5	31					0	0	1	0	0
IMMP2L	83943	broad.mit.edu	37	7	110303671	110303671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:110303671C>T	uc003vfq.1	-	6	958	c.515G>A	c.(514-516)AGA>AAA	p.R172K	IMMP2L_uc010ljr.1_Missense_Mutation_p.R172K	NM_032549	NP_115938	Q96T52	IMP2L_HUMAN	IMP2 inner mitochondrial membrane protease-like	172					protein processing involved in protein targeting to mitochondrion|proteolysis	integral to membrane|mitochondrial inner membrane peptidase complex|nucleus	serine-type peptidase activity				0				UCEC - Uterine corpus endometrioid carcinoma (4;0.053)|Epithelial(3;2.27e-07)|all cancers(3;1.36e-05)|STAD - Stomach adenocarcinoma(3;0.00148)|KIRC - Kidney renal clear cell carcinoma(11;0.0339)|Lung(3;0.0375)|Kidney(11;0.0415)|LUSC - Lung squamous cell carcinoma(290;0.173)		TTCCTCTTCTCTCTGTACTGG	0.493													5	48					0	0	1	0	0
GPR85	54329	broad.mit.edu	37	7	112724660	112724660	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:112724660G>A	uc010ljv.2	-	2	634	c.117C>T	c.(115-117)CTC>CTT	p.L39L	GPR85_uc003vgp.1_Silent_p.L39L|GPR85_uc003vgq.2_Silent_p.L39L|GPR85_uc010ljw.1_Silent_p.L39L	NM_001146266	NP_001139738	P60893	GPR85_HUMAN	G protein-coupled receptor 85	39	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|central_nervous_system(1)	2						TGGAGATCAGGAGGTTGCCCA	0.433													4	56					0	0	1	0	0
MET	4233	broad.mit.edu	37	7	116397718	116397718	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:116397718G>A	uc003vij.2	+	8	2179	c.1992G>A	c.(1990-1992)CCG>CCA	p.P664P	MET_uc010lkh.2_Silent_p.P664P|MET_uc011kne.1_Silent_p.P636P|MET_uc011knf.1_Silent_p.P664P|MET_uc011kng.1_Silent_p.P664P|MET_uc011knh.1_Silent_p.P664P|MET_uc011kni.1_Silent_p.P664P|MET_uc011knj.1_Silent_p.P234P	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	664	Extracellular (Potential).|IPT/TIG 2.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			GTATTTCGCCGAAATACGGTC	0.333			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				6	6					0	0	1	0	0
WNT2	7472	broad.mit.edu	37	7	116955218	116955218	+	Silent	SNP	G	A	A	rs142048882	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:116955218G>A	uc003viz.2	-	3	795	c.495C>T	c.(493-495)ATC>ATT	p.I165I	WNT2_uc003vja.2_Silent_p.I69I	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	165					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		GGGCAAATTTGATCCCATAGT	0.428													6	63					0	0	1	0	0
WNT2	7472	broad.mit.edu	37	7	116955324	116955324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:116955324C>T	uc003viz.2	-	3	689	c.389G>A	c.(388-390)GGA>GAA	p.G130E	WNT2_uc003vja.2_Missense_Mutation_p.G34E	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	130					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		TTTTACTTCTCCTTGGCTACA	0.453													4	27					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117175451	117175451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:117175451G>A	uc003vjd.2	+	6	861	c.729G>A	c.(727-729)ATG>ATA	p.M243I	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	243	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TAGGGAGAATGATGATGAAGT	0.423									Cystic_Fibrosis				4	15					0	0	1	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117431893	117431893	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:117431893G>A	uc003vjf.2	-	4	1449	c.1357C>T	c.(1357-1359)CAG>TAG	p.Q453*		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	453	Pro-rich.									ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		GCATTGCCCTGAAATCTAAAT	0.478													15	225					0	0	1	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117432245	117432246	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:117432245_117432246GG>AA	uc003vjf.2	-	4	1096_1097	c.1004_1005CC>TT	c.(1003-1005)CCC>CTT	p.P335L		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	335										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		CAGAAACTAGGGGACTCCCTGT	0.5													9	136					0	0	1	0	0
C7orf58	79974	broad.mit.edu	37	7	120884286	120884286	+	Missense_Mutation	SNP	C	T	T	rs148996529	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:120884286C>T	uc003vjq.3	+	18	2651	c.2204C>T	c.(2203-2205)TCG>TTG	p.S735L	C7orf58_uc003vjs.3_Missense_Mutation_p.S735L|C7orf58_uc003vjt.3_Missense_Mutation_p.S515L	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	735						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					CTTAGTTGTTCGGACAACAGG	0.468													4	38					0	0	1	0	0
AASS	10157	broad.mit.edu	37	7	121773727	121773727	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:121773727C>T	uc003vka.2	-	1	150	c.54G>A	c.(52-54)AAG>AAA	p.K18K	AASS_uc011knu.1_RNA|AASS_uc011knv.1_RNA|AASS_uc003vkb.2_Silent_p.K18K|AASS_uc011knw.1_Intron	NM_005763	NP_005754	Q9UDR5	AASS_HUMAN	aminoadipate-semialdehyde synthase precursor	18					protein tetramerization	mitochondrial matrix	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity|saccharopine dehydrogenase (NADP+, L-lysine-forming) activity			upper_aerodigestive_tract(1)|ovary(1)	2					L-Glutamic Acid(DB00142)|NADH(DB00157)	GGTGAAGACCCTTGGAGAGGC	0.557													15	70					0	0	1	0	0
RNF148	378925	broad.mit.edu	37	7	122342352	122342352	+	Silent	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:122342352G>C	uc003vkk.1	-	1	670	c.453C>G	c.(451-453)GTC>GTG	p.V151V	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron|RNF148_uc010lkr.1_Silent_p.V53V	NM_198085	NP_932351	Q8N7C7	RN148_HUMAN	ring finger protein 148 precursor	151	PA.					integral to membrane	zinc ion binding				0						TCATCACCGCGACTATATTTT	0.463													6	44					0	0	1	0	0
HYAL4	23553	broad.mit.edu	37	7	123508466	123508466	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:123508466C>T	uc003vlc.2	+	3	777	c.139C>T	c.(139-141)CCT>TCT	p.P47S	HYAL4_uc011knz.1_Missense_Mutation_p.P47S	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	47	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						TCAAAGGAAACCTTTTATAGC	0.348													5	37					0	0	1	0	0
HYAL4	23553	broad.mit.edu	37	7	123509211	123509211	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:123509211A>T	uc003vlc.2	+	3	1522	c.884A>T	c.(883-885)GAT>GTT	p.D295V	HYAL4_uc011knz.1_Missense_Mutation_p.D295V	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	295	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						ACATCTCATGATTATGCTCTG	0.438													4	32					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	124116624	124116624	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:124116624A>C	uc011kod.1	+	1	200	c.200A>C	c.(199-201)GAC>GCC	p.D67A		NM_001085395	NP_001078864			RecName: Full=Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 2;          Short=CTD phosphatase SSU72-like protein 2;          EC=3.1.3.16;																		ATGTACAATGACCTCCTCAGG	0.433													8	107					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126544639	126544639	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:126544639G>A	uc003vlr.2	-	3	1137	c.826C>T	c.(826-828)CGA>TGA	p.R276*	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Nonsense_Mutation_p.R276*|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_5'UTR	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	276	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	ATCACTGCTCGAGCATTAGGT	0.413										HNSCC(24;0.065)			4	24					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126882852	126882852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:126882852C>T	uc003vlr.2	-	1	718	c.407G>A	c.(406-408)GGA>GAA	p.G136E	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.G136E|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	136	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GGGTGGATCTCCATTAGCACA	0.468										HNSCC(24;0.065)			10	25					0	0	1	0	0
FSCN3	29999	broad.mit.edu	37	7	127239557	127239557	+	Missense_Mutation	SNP	G	A	A	rs141748303	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:127239557G>A	uc003vmd.1	+	5	1462	c.1243G>A	c.(1243-1245)GAC>AAC	p.D415N	FSCN3_uc011koh.1_Missense_Mutation_p.D281N|FSCN3_uc010llc.1_Missense_Mutation_p.D415N	NM_020369	NP_065102	Q9NQT6	FSCN3_HUMAN	fascin 3	415						actin cytoskeleton|cytoplasm	actin filament binding|protein binding, bridging			ovary(1)	1						GGATCAGCCCGACCGCATTCA	0.547													11	115					0	0	1	0	0
LRRC4	64101	broad.mit.edu	37	7	127669217	127669217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:127669217C>T	uc003vmk.2	-	2	1614	c.1477G>A	c.(1477-1479)GTG>ATG	p.V493M	SND1_uc003vmi.2_Intron|SND1_uc010lle.2_Intron	NM_022143	NP_071426	Q9HBW1	LRRC4_HUMAN	leucine rich repeat containing 4 precursor	493	Thr-rich.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4				Lung(243;0.124)		TGAATGAGCACCGTGGTAGAG	0.567													6	77					0	0	1	0	0
METTL2B	55798	broad.mit.edu	37	7	128133876	128133876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:128133876C>T	uc003vnf.2	+	6	725	c.688C>T	c.(688-690)CCT>TCT	p.P230S	METTL2B_uc003vng.2_Missense_Mutation_p.P165S|METTL2B_uc011kop.1_Missense_Mutation_p.P94S	NM_018396	NP_060866	Q6P1Q9	MTL2B_HUMAN	methyltransferase like 2B	230							methyltransferase activity			skin(1)	1						AGAATATGATCCTTCTCGGTG	0.358													6	67					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128477558	128477558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:128477558G>A	uc003vnz.3	+	4	1015	c.806G>A	c.(805-807)CGA>CAA	p.R269Q	FLNC_uc003voa.3_Missense_Mutation_p.R269Q	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	269					cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GCCCCTGTTCGATCCAAGCAG	0.602													9	70					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128486211	128486211	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:128486211G>A	uc003vnz.3	+	22	4167	c.3958G>A	c.(3958-3960)GAG>AAG	p.E1320K	FLNC_uc003voa.3_Missense_Mutation_p.E1320K	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1320	Filamin 11.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CACCGCCTACGAGGAGGGTGA	0.662													12	30					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128488636	128488636	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:128488636C>T	uc003vnz.3	+	27	4811	c.4602C>T	c.(4600-4602)CTC>CTT	p.L1534L	FLNC_uc003voa.3_Silent_p.L1534L	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1534	Filamin 14.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TCAAGGTCCTCCCAGCTCATG	0.632													13	276					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128490512	128490512	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:128490512C>T	uc003vnz.3	+	32	5582	c.5373C>T	c.(5371-5373)TTC>TTT	p.F1791F	FLNC_uc003voa.3_Silent_p.F1758F	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1791	Filamin 16.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TCATCCCCTTCGCGGTGCAGA	0.532													15	126					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128493061	128493061	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:128493061T>C	uc003vnz.3	+	37	6393	c.6184T>C	c.(6184-6186)TTC>CTC	p.F2062L	FLNC_uc003voa.3_Missense_Mutation_p.F2029L	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2062	Filamin 19.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GGTGGCAGAGTTCATCGTGGA	0.637													3	63					0	0	1	0	0
SMO	6608	broad.mit.edu	37	7	128846132	128846133	+	Missense_Mutation	DNP	GG	AC	AC	rs141792785		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:128846132_128846133GG>AC	uc003vor.2	+	5	1342_1343	c.1062_1063GG>AC	c.(1060-1065)TCGGGC>TCACGC	p.G355R	SMO_uc003vos.2_Missense_Mutation_p.G30R	NM_005631	NP_005622	Q99835	SMO_HUMAN	smoothened precursor	355	Cytoplasmic (Potential).				adenohypophysis development|axon extension involved in axon guidance|canonical Wnt receptor signaling pathway|cardioblast differentiation|central nervous system neuron differentiation|cerebellar cortex morphogenesis|ciliary receptor clustering involved in smoothened signaling pathway|determination of left/right symmetry|dorsal/ventral neural tube patterning|embryonic camera-type eye development|embryonic digestive tract morphogenesis|embryonic neurocranium morphogenesis|embryonic viscerocranium morphogenesis|exocrine pancreas development|facial nerve development|floor plate formation|gonad development|heart morphogenesis|muscle cell fate commitment|negative regulation of apoptosis|neural crest cell migration|neuron fate commitment|neuron projection regeneration|odontogenesis of dentine-containing tooth|osteoblast differentiation|otolith morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of neuroblast proliferation|positive regulation of smoothened signaling pathway|semicircular canal morphogenesis|smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation|smoothened signaling pathway involved in ventral spinal cord patterning|spermatogenesis|vasculogenesis	cilium|cytoplasm|integral to membrane|neuronal cell body|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(19)|large_intestine(10)|central_nervous_system(3)|upper_aerodigestive_tract(2)|biliary_tract(1)|lung(1)|liver(1)	37						AGCCTCTCTCGGGCAAGACCTC	0.574			Mis		skin basal cell 								5	101					0	0	1	0	0
FAM40B	57464	broad.mit.edu	37	7	129104486	129104486	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:129104486C>T	uc011koy.1	+	16	1723	c.1683C>T	c.(1681-1683)ATC>ATT	p.I561I	FAM40B_uc003vow.2_Silent_p.I561I|FAM40B_uc011koz.1_Silent_p.I53I	NM_020704	NP_065755	Q9ULQ0	FA40B_HUMAN	hypothetical protein LOC57464 isoform a	561											0						AGCTGGGCATCGATGTGAACA	0.478													10	52					0	0	1	0	0
CPA4	51200	broad.mit.edu	37	7	129962364	129962364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:129962364G>A	uc003vpr.2	+	11	1161	c.1114G>A	c.(1114-1116)GAC>AAC	p.D372N	CPA4_uc011kpd.1_Missense_Mutation_p.D339N|CPA4_uc011kpe.1_Missense_Mutation_p.D268N	NM_016352	NP_057436	Q9UI42	CBPA4_HUMAN	carboxypeptidase A4 preproprotein	372					histone acetylation|proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					CTGGGCATATGACAACGGCAT	0.532													7	73					0	0	1	0	0
CPA5	93979	broad.mit.edu	37	7	130008274	130008274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:130008274G>A	uc010lmd.1	+	14	1767	c.1147G>A	c.(1147-1149)GAC>AAC	p.D383N	CPA5_uc003vps.2_Missense_Mutation_p.D383N|CPA5_uc003vpt.2_Silent_p.S354S|CPA5_uc010lme.1_Missense_Mutation_p.D383N|CPA5_uc003vpu.1_Missense_Mutation_p.D383N|uc003vpv.1_RNA	NM_001127441	NP_001120913	Q8WXQ8	CBPA5_HUMAN	carboxypeptidase A5 isoform 1	383					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2	Melanoma(18;0.0435)					GATCACCGTCGACTGGGCCTA	0.557													26	100					0	0	1	0	0
CPA1	1357	broad.mit.edu	37	7	130023569	130023569	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:130023569C>T	uc003vpx.2	+	6	702	c.630C>T	c.(628-630)CTC>CTT	p.L210L	CPA1_uc011kpf.1_Silent_p.L122L|CPA1_uc003vpw.2_Intron	NM_001868	NP_001859	P15085	CBPA1_HUMAN	carboxypeptidase A1 precursor	210					proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding	p.L210L(1)		ovary(1)	1	Melanoma(18;0.0435)					CCGCCATTCTCGACACCTTGG	0.607													11	138					0	0	1	0	0
MKLN1	4289	broad.mit.edu	37	7	131151038	131151038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:131151038C>T	uc011kpm.1	+	15	1856	c.1792C>T	c.(1792-1794)CAT>TAT	p.H598Y	MKLN1_uc011kpl.1_Missense_Mutation_p.H575Y|MKLN1_uc010lmh.2_Missense_Mutation_p.H598Y|MKLN1_uc003vqs.2_Missense_Mutation_p.H391Y|MKLN1_uc003vqu.2_Missense_Mutation_p.H88Y	NM_013255	NP_037387	Q9UL63	MKLN1_HUMAN	muskelin 1, intracellular mediator containing	598	Kelch 6.				signal transduction	cytoplasm	protein binding			breast(1)	1	Melanoma(18;0.162)					ATTATAGGTTCATTACTTATT	0.358													8	86					0	0	1	0	0
PODXL	5420	broad.mit.edu	37	7	131196076	131196076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:131196076C>T	uc003vqw.3	-	2	475	c.217G>A	c.(217-219)GAA>AAA	p.E73K	PODXL_uc003vqx.3_Missense_Mutation_p.E73K	NM_001018111	NP_001018121	O00592	PODXL_HUMAN	podocalyxin-like isoform 1 precursor	73	Thr-rich.|Extracellular (Potential).				cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle				breast(2)|pancreas(1)	3	Melanoma(18;0.162)					GCCAAGATTTCGTTGGCCTTG	0.557													6	78					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131831424	131831424	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:131831424G>A	uc003vra.3	-	28	5129	c.4900C>T	c.(4900-4902)CTC>TTC	p.L1634F	PLXNA4_uc003vqz.3_5'Flank	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1634	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CGTGAGCGGAGGCTGTCGGGG	0.577													32	136					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131866224	131866224	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:131866224G>A	uc003vra.3	-	18	3637	c.3408C>T	c.(3406-3408)TTC>TTT	p.F1136F		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1136	Extracellular (Potential).|IPT/TIG 3.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GATAGTAGGTGAAGTTGGTCT	0.572													11	126					0	0	1	0	0
AKR1B1	231	broad.mit.edu	37	7	134133142	134133142	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:134133142G>A	uc003vrp.1	-	6	730	c.656C>T	c.(655-657)CCC>CTC	p.P219L	AKR1B1_uc003vrq.1_RNA	NM_001628	NP_001619	P15121	ALDR_HUMAN	aldo-keto reductase family 1, member B1	219	NADP.				C21-steroid hormone biosynthetic process|carbohydrate metabolic process|response to stress	cytosol|extracellular space|nucleus	alditol:NADP+ 1-oxidoreductase activity|electron carrier activity|protein binding			ovary(3)	3					NADH(DB00157)|Sulindac(DB00605)	AGCTCACCAGGGCCTGTCAGG	0.522													5	85					0	0	1	0	0
CNOT4	4850	broad.mit.edu	37	7	135073606	135073606	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:135073606G>A	uc003vsv.1	-	11	1975	c.1668C>T	c.(1666-1668)ACC>ACT	p.T556T	CNOT4_uc003vss.2_Intron|CNOT4_uc011kpz.1_Intron|CNOT4_uc003vst.2_Intron|CNOT4_uc003vsu.1_Silent_p.T553T|CNOT4_uc011kpy.1_Intron	NM_001008225	NP_001008226	O95628	CNOT4_HUMAN	CCR4-NOT transcription complex, subunit 4	556					nuclear-transcribed mRNA poly(A) tail shortening|protein autoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	nucleotide binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding				0						AATGGGAAGAGGTTGACAGTG	0.473													4	47					0	0	1	0	0
FAM180A	389558	broad.mit.edu	37	7	135418855	135418855	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:135418855C>T	uc003vtd.2	-	3	656	c.390G>A	c.(388-390)CTG>CTA	p.L130L	FAM180A_uc010lmt.2_RNA|FAM180A_uc010lmu.2_Silent_p.L130L	NM_205855	NP_995327	Q6UWF9	F180A_HUMAN	hypothetical protein LOC389558 precursor	130						extracellular region				ovary(2)	2						CTGTGTAGGCCAGGGTCAGCA	0.612													7	52					0	0	1	0	0
TRIM24	8805	broad.mit.edu	37	7	138255624	138255624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:138255624C>T	uc003vuc.2	+	11	1969	c.1754C>T	c.(1753-1755)TCC>TTC	p.S585F	TRIM24_uc003vub.2_Missense_Mutation_p.S551F	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	585					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						AACAGCACATCCTCTACTCCT	0.463													9	42					0	0	1	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138429969	138429969	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:138429969G>A	uc003vuf.2	-	13	1615	c.1377C>T	c.(1375-1377)TCC>TCT	p.S459S	ATP6V0A4_uc003vug.2_Silent_p.S459S|ATP6V0A4_uc003vuh.2_Silent_p.S459S	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	459	Helical; (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						CCGTGTAGATGGAGAAGATGC	0.488													19	62					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138545943	138545943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:138545943C>T	uc011kql.1	-	16	5238	c.5189G>A	c.(5188-5190)CGA>CAA	p.R1730Q	KIAA1549_uc011kqi.1_Missense_Mutation_p.R514Q|KIAA1549_uc003vuk.3_Missense_Mutation_p.R1680Q|KIAA1549_uc011kqj.1_Missense_Mutation_p.R1730Q|KIAA1549_uc011kqk.1_Missense_Mutation_p.R514Q	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1730						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CTGGGTGGCTCGCCTCTCTTC	0.637			O	BRAF	pilocytic astrocytoma								8	78					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138545963	138545963	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:138545963G>A	uc011kql.1	-	16	5218	c.5169C>T	c.(5167-5169)ACC>ACT	p.T1723T	KIAA1549_uc011kqi.1_Silent_p.T507T|KIAA1549_uc003vuk.3_Silent_p.T1673T|KIAA1549_uc011kqj.1_Silent_p.T1723T|KIAA1549_uc011kqk.1_Silent_p.T507T	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1723						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CCTGGGAAGGGGTGCTGTTTG	0.657			O	BRAF	pilocytic astrocytoma								17	62					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138546041	138546041	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:138546041G>A	uc011kql.1	-	16	5140	c.5091C>T	c.(5089-5091)CTC>CTT	p.L1697L	KIAA1549_uc011kqi.1_Silent_p.L481L|KIAA1549_uc003vuk.3_Silent_p.L1647L|KIAA1549_uc011kqj.1_Silent_p.L1697L|KIAA1549_uc011kqk.1_Silent_p.L481L	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1697						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						TGGGGGCCACGAGGGCAAAGG	0.697			O	BRAF	pilocytic astrocytoma								8	100					0	0	1	0	0
UBN2	254048	broad.mit.edu	37	7	138967807	138967807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:138967807C>T	uc011kqr.1	+	15	2156	c.2156C>T	c.(2155-2157)TCC>TTC	p.S719F		NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	719										ovary(1)|skin(1)	2						ACTCCAACATCCCTGGTGGCT	0.443													4	22					0	0	1	0	0
CLEC2L	154790	broad.mit.edu	37	7	139226837	139226837	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:139226837G>A	uc010lnd.2	+	4	503	c.503G>A	c.(502-504)TGG>TAG	p.W168*		NM_001080511	NP_001073980	P0C7M8	CLC2L_HUMAN	C-type lectin domain family 2, member L	168	C-type lectin.					integral to membrane	sugar binding				0	Melanoma(164;0.233)					GAATTCCACTGGGTCAACGGG	0.562													3	19					0	0	1	0	0
HIPK2	28996	broad.mit.edu	37	7	139281519	139281519	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:139281519G>A	uc003vvf.3	-	12	2835	c.2661C>T	c.(2659-2661)GTC>GTT	p.V887V	HIPK2_uc003vvd.3_Silent_p.V860V	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	887	Interaction with TP53 and TP73.|Required for localization to nuclear speckles (By similarity).|Interaction with UBE2I (By similarity).|SUMO interaction motifs (SIM); required for nuclear localization and kinase activity.|Interaction with HMGA1 (By similarity).|Interaction with POU4F1 (By similarity).			VSVI->KSAK: Loss of SUMO interaction, and impaired nuclear and PML-nuclear bodies localization.|VSVITISS->KFMHFHRM: Loss of SUMO and CBX4 interaction, and impaired nuclear and PML-nuclear bodies localization.	apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					TGATGGTGATGACGCTGACCG	0.652													31	104					0	0	1	0	0
TBXAS1	6916	broad.mit.edu	37	7	139655381	139655381	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:139655381C>T	uc011kqv.1	+	8	968	c.804C>T	c.(802-804)ATC>ATT	p.I268I	TBXAS1_uc003vvh.2_Silent_p.I222I|TBXAS1_uc010lne.2_Silent_p.I154I|TBXAS1_uc011kqu.1_Silent_p.I173I|TBXAS1_uc003vvi.2_Silent_p.I222I|TBXAS1_uc003vvj.2_Silent_p.I222I|TBXAS1_uc011kqw.1_Silent_p.I202I	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	221	Cytoplasmic (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					AATTCTGCATCCCCAGACCTA	0.597													6	87					0	0	1	0	0
TBXAS1	6916	broad.mit.edu	37	7	139661795	139661795	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:139661795C>T	uc011kqv.1	+	10	1202	c.1038C>T	c.(1036-1038)ATC>ATT	p.I346I	TBXAS1_uc003vvh.2_Silent_p.I300I|TBXAS1_uc010lne.2_Silent_p.I232I|TBXAS1_uc011kqu.1_Silent_p.I251I|TBXAS1_uc003vvi.2_Silent_p.I300I|TBXAS1_uc003vvj.2_Silent_p.I300I|TBXAS1_uc011kqw.1_Silent_p.I280I	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	299	Lumenal (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					ACTTTGACATCGTCAGAGACG	0.537													4	30					0	0	1	0	0
PARP12	64761	broad.mit.edu	37	7	139724440	139724440	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:139724440G>A	uc003vvl.1	-	12	2900	c.2026C>T	c.(2026-2028)CAG>TAG	p.Q676*	PARP12_uc003vvk.1_Nonsense_Mutation_p.Q462*|PARP12_uc010lnf.1_RNA	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12	676	PARP catalytic.					nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					GTGGTGTACTGGATGACATAC	0.567													16	43					0	0	1	0	0
PARP12	64761	broad.mit.edu	37	7	139756822	139756822	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:139756822G>A	uc003vvl.1	-	3	1468	c.594C>T	c.(592-594)TCC>TCT	p.S198S	PARP12_uc003vvk.1_5'UTR|PARP12_uc010lnf.1_RNA	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12	198	C3H1-type 3.					nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					AGAAATCATGGGATCTCTTAC	0.448													15	87					0	0	1	0	0
PARP12	64761	broad.mit.edu	37	7	139756882	139756882	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:139756882G>A	uc003vvl.1	-	3	1408	c.534C>T	c.(532-534)CTC>CTT	p.L178L	PARP12_uc003vvk.1_5'UTR|PARP12_uc010lnf.1_RNA	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12	178	C3H1-type 2.					nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					GGCAGATATGGAGCTTGATGC	0.433													7	98					0	0	1	0	0
DENND2A	27147	broad.mit.edu	37	7	140266982	140266982	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:140266982C>T	uc010lnj.2	-	7	1828	c.1683G>A	c.(1681-1683)GAG>GAA	p.E561E	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Silent_p.E561E|DENND2A_uc003vvw.2_Silent_p.E561E|DENND2A_uc003vvx.2_Silent_p.E561E	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	561										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					AGAGCTGCCTCTCCTGGTACT	0.577													8	27					0	0	1	0	0
WEE2	494551	broad.mit.edu	37	7	141408849	141408849	+	Silent	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:141408849A>G	uc003vwn.2	+	1	697	c.291A>G	c.(289-291)CAA>CAG	p.Q97Q	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_Intron|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	97					egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					CACCAGCCCAACCAGACAGCA	0.527													11	49					0	0	1	0	0
SSBP1	6742	broad.mit.edu	37	7	141441975	141441975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:141441975C>T	uc003vwo.1	+	3	109	c.31C>T	c.(31-33)CGT>TGT	p.R11C	SSBP1_uc011kri.1_Missense_Mutation_p.R11C|SSBP1_uc010lnp.1_Missense_Mutation_p.R11C	NM_003143	NP_003134	Q04837	SSBP_HUMAN	single-stranded DNA binding protein 1 precursor	11					DNA replication|positive regulation of helicase activity	mitochondrial nucleoid	single-stranded DNA binding			ovary(1)	1	Melanoma(164;0.0171)					TTAGGTACTTCGTCAGTTTGT	0.318													6	30					0	0	1	0	0
SSBP1	6742	broad.mit.edu	37	7	141443372	141443372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:141443372G>A	uc003vwo.1	+	4	175	c.97G>A	c.(97-99)GTG>ATG	p.V33M	SSBP1_uc011kri.1_Missense_Mutation_p.V33M|SSBP1_uc010lnp.1_Missense_Mutation_p.V33M	NM_003143	NP_003134	Q04837	SSBP_HUMAN	single-stranded DNA binding protein 1 precursor	33	SSB.				DNA replication|positive regulation of helicase activity	mitochondrial nucleoid	single-stranded DNA binding			ovary(1)	1	Melanoma(164;0.0171)					CCTGAATCGTGTGCACTTACT	0.338													18	69					0	0	1	0	0
SSBP1	6742	broad.mit.edu	37	7	141443401	141443402	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:141443401_141443402CC>AT	uc003vwo.1	+	4	204_205	c.126_127CC>AT	c.(124-129)GACCCT>GAATCT	p.42_43DP>ES	SSBP1_uc011kri.1_Missense_Mutation_p.42_43DP>ES|SSBP1_uc010lnp.1_Missense_Mutation_p.42_43DP>ES	NM_003143	NP_003134	Q04837	SSBP_HUMAN	single-stranded DNA binding protein 1 precursor	42_43	SSB.				DNA replication|positive regulation of helicase activity	mitochondrial nucleoid	single-stranded DNA binding			ovary(1)	1	Melanoma(164;0.0171)					TGGGTCAGGACCCTGTCTTGAG	0.406													17	72					0	0	1	0	0
TAS2R3	50831	broad.mit.edu	37	7	141464174	141464174	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:141464174T>C	uc003vwp.1	+	1	278	c.216T>C	c.(214-216)TCT>TCC	p.S72S		NM_016943	NP_058639	Q9NYW6	TA2R3_HUMAN	taste receptor T2R3	72	Extracellular (Potential).				sensory perception of taste		taste receptor activity			central_nervous_system(1)	1	Melanoma(164;0.0171)					TAGAATTCTCTCCCAACACAC	0.398													17	71					0	0	1	0	0
CLEC5A	23601	broad.mit.edu	37	7	141643749	141643749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:141643749C>T	uc003vwv.1	-	4	352	c.155G>A	c.(154-156)GGG>GAG	p.G52E	CLEC5A_uc011krm.1_Intron|CLEC5A_uc003vww.1_Missense_Mutation_p.G52E|CLEC5A_uc010lnq.1_Intron|CLEC5A_uc010lnr.1_Intron	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	52	Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					GGAACTGCTCCCAAAAATCTG	0.433													5	15					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141754563	141754563	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:141754563C>T	uc003vwy.2	+	27	3223	c.3169C>T	c.(3169-3171)CCC>TCC	p.P1057S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1057	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GATTTATGATCCCAACAAGAA	0.418													4	45					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	142001040	142001040	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:142001040C>T	uc011kro.1	+	2	177	c.132C>T	c.(130-132)CCC>CCT	p.P44P						SubName: Full=V_segment translation product; Flags: Fragment;																		ACTGTGTCCCCATCTCTAATC	0.438													4	16					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142458518	142458518	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:142458518C>T	uc003wak.2	+	2	170	c.153C>T	c.(151-153)TCC>TCT	p.S51S	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_Missense_Mutation_p.P27S|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	51	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			GTGGTGGCTCCCTCATCAACG	0.562									Hereditary_Pancreatitis				10	53					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142458528	142458528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:142458528G>A	uc003wak.2	+	2	180	c.163G>A	c.(163-165)GAA>AAA	p.E55K	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_Missense_Mutation_p.R30Q|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	55	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			CCTCATCAACGAACAGTGGGT	0.572									Hereditary_Pancreatitis				18	40					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142460757	142460757	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:142460757C>T	uc003wak.2	+	5	647	c.630C>T	c.(628-630)CTC>CTT	p.L210L	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc003wam.2_Silent_p.L150L	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	210	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			ATGGACAGCTCCAAGGAGTTG	0.498									Hereditary_Pancreatitis				24	53					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142460771	142460771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:142460771C>T	uc003wak.2	+	5	661	c.644C>T	c.(643-645)TCC>TTC	p.S215F	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc003wam.2_Missense_Mutation_p.S155F	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	215	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			GGAGTTGTCTCCTGGGGTGAT	0.502									Hereditary_Pancreatitis				21	49					0	0	1	0	0
TRPV6	55503	broad.mit.edu	37	7	142574216	142574216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:142574216G>A	uc003wbx.1	-	6	923	c.707C>T	c.(706-708)CCC>CTC	p.P236L	TRPV6_uc003wbw.1_Missense_Mutation_p.P22L|TRPV6_uc010lou.1_Missense_Mutation_p.P107L	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	236	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					CTGGTGATTGGGCACGAGGTC	0.572													12	45					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142625246	142625246	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:142625246C>T	uc003wby.1	-	7	1110	c.846G>A	c.(844-846)GAG>GAA	p.E282E	TRPV5_uc003wbz.2_Silent_p.E282E	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	282	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					AGGAGTCGATCTCTGTGAGGT	0.557													8	48					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142626639	142626639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:142626639G>A	uc003wby.1	-	4	635	c.371C>T	c.(370-372)GCT>GTT	p.A124V	TRPV5_uc003wbz.2_Missense_Mutation_p.A124V	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	124	ANK 3.|Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GTTCACAACAGCGATGTGCAG	0.627													4	73					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142641774	142641774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:142641774G>A	uc003wcb.2	-	12	1579	c.1369C>T	c.(1369-1371)CTT>TTT	p.L457F		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	457	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					ATCCAGGGAAGGTTTCTGAGG	0.587													8	34					0	0	1	0	0
OR9A2	135924	broad.mit.edu	37	7	142723664	142723664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:142723664C>T	uc003wcc.1	-	1	556	c.556G>A	c.(556-558)GAT>AAT	p.D186N		NM_001001658	NP_001001658	Q8NGT5	OR9A2_HUMAN	olfactory receptor, family 9, subfamily A,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.059)					AGAGTGTTATCGCAGGACAGT	0.398													14	49					0	0	1	0	0
OR9A2	135924	broad.mit.edu	37	7	142724187	142724187	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:142724187G>A	uc003wcc.1	-	1	33	c.33C>T	c.(31-33)TTC>TTT	p.F11F		NM_001001658	NP_001001658	Q8NGT5	OR9A2_HUMAN	olfactory receptor, family 9, subfamily A,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.059)					CTAGAAGGTGGAATTCAGTGG	0.428													4	39					0	0	1	0	0
OR6V1	346517	broad.mit.edu	37	7	142749564	142749564	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:142749564A>G	uc011ksv.1	+	1	127	c.127A>G	c.(127-129)ATC>GTC	p.I43V		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					AAACACCATCATCATAGTTAT	0.488													11	179					0	0	1	0	0
TAS2R40	259286	broad.mit.edu	37	7	142919645	142919645	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:142919645T>C	uc011ksx.1	+	1	474	c.474T>C	c.(472-474)TTT>TTC	p.F158F		NM_176882	NP_795363	P59535	T2R40_HUMAN	taste receptor, type 2, member 40	158	Helical; Name=4; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1	Melanoma(164;0.059)					GCTTCAGCTTTCCTCTCTCGA	0.448													13	44					0	0	1	0	0
TAS2R60	338398	broad.mit.edu	37	7	143140569	143140570	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:143140569_143140570AG>GA	uc011ktg.1	+	1	24_25	c.24_25AG>GA	c.(22-27)CTAGGA>CTGAGA	p.G9R	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	9	Helical; Name=1; (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					ACATGGTTCTAGGATCTTCGGT	0.48													4	69					0	0	1	0	0
OR2F1	26211	broad.mit.edu	37	7	143657186	143657186	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:143657186G>A	uc003wds.1	+	1	167	c.123G>A	c.(121-123)GGG>GGA	p.G41G		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					CCGTGCTGGGGAACTGTCTCA	0.522													28	96					0	0	1	0	0
OR2A5	393046	broad.mit.edu	37	7	143747773	143747773	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:143747773C>T	uc011ktw.1	+	1	279	c.279C>T	c.(277-279)TCC>TCT	p.S93S		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					AAACAATCTCCTTTGTCCCAT	0.428													18	85					0	0	1	0	0
OR2A25	392138	broad.mit.edu	37	7	143771320	143771320	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:143771320G>A	uc011ktx.1	+	1	8	c.8G>A	c.(7-9)GGA>GAA	p.G3E		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GAAATGGGGGGAAATCAGACT	0.448													6	72					0	0	1	0	0
OR2A25	392138	broad.mit.edu	37	7	143771812	143771812	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:143771812T>C	uc011ktx.1	+	1	500	c.500T>C	c.(499-501)TTC>TCC	p.F167S		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CCACTGTCCTTCTGTGGACCC	0.433													9	116					0	0	1	0	0
OR2A25	392138	broad.mit.edu	37	7	143771980	143771980	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:143771980C>T	uc011ktx.1	+	1	668	c.668C>T	c.(667-669)GCC>GTC	p.A223V		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	223	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					ATTCTATGTGCCATTCTAAAG	0.478													11	77					0	0	1	0	0
OR2A12	346525	broad.mit.edu	37	7	143792596	143792596	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:143792596C>T	uc011kty.1	+	1	396	c.396C>T	c.(394-396)ACC>ACT	p.T132T		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	132	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					TGCAATACACCCTCATTATGA	0.438													7	71					0	0	1	0	0
NOBOX	135935	broad.mit.edu	37	7	144098438	144098438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:144098438C>T	uc011kue.1	-	4	545	c.545G>A	c.(544-546)GGG>GAG	p.G182E		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	182					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					ACAATCTTCCCCCTGAGTCTG	0.622													4	25					0	0	1	0	0
NOBOX	135935	broad.mit.edu	37	7	144098483	144098483	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:144098483G>A	uc011kue.1	-	4	500	c.500C>T	c.(499-501)CCC>CTC	p.P167L		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	167					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					GTCTTTGTGGGGAGCCCTGGA	0.612													4	34					0	0	1	0	0
ZNF786	136051	broad.mit.edu	37	7	148767689	148767689	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:148767689G>A	uc003wfh.2	-	4	2312	c.2175C>T	c.(2173-2175)ATC>ATT	p.I725I	ZNF786_uc011kuk.1_Silent_p.I688I|ZNF786_uc003wfi.2_Silent_p.I639I	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	725	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CGGGCCTGTGGATGCGCTGGT	0.562													23	107					0	0	1	0	0
ZNF425	155054	broad.mit.edu	37	7	148802413	148802413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:148802413G>A	uc003wfj.2	-	4	623	c.550C>T	c.(550-552)CCC>TCC	p.P184S		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	184					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			GGCCCTGTGGGAATTTCTAAG	0.478													7	38					0	0	1	0	0
ZNF398	57541	broad.mit.edu	37	7	148876611	148876611	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:148876611C>T	uc003wfl.2	+	6	1922	c.1647C>T	c.(1645-1647)ATC>ATT	p.I549I	ZNF398_uc011kul.1_Silent_p.I378I|ZNF398_uc011kum.1_Silent_p.I554I	NM_170686	NP_733787	Q8TD17	ZN398_HUMAN	zinc finger 398 isoform a	549	C2H2-type 8.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00143)			AGAGCTTCATCCGCAAGCACC	0.602													6	59					0	0	1	0	0
ZNF212	7988	broad.mit.edu	37	7	148947810	148947810	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:148947810C>T	uc003wfp.2	+	3	549	c.453C>T	c.(451-453)ACC>ACT	p.T151T		NM_012256	NP_036388	Q9UDV6	ZN212_HUMAN	zinc finger protein 212	151	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)			TCTGTTTCACCGAGCAGGAAT	0.498													8	105					0	0	1	0	0
ZNF777	27153	broad.mit.edu	37	7	149129129	149129129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:149129129G>A	uc003wfv.2	-	6	2397	c.2234C>T	c.(2233-2235)TCG>TTG	p.S745L		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	745					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			CCGCTCGCGCGAGTGCACGCG	0.672													5	80					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149489167	149489167	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:149489167G>A	uc010lpk.2	+	37	5412	c.5412G>A	c.(5410-5412)CAG>CAA	p.Q1804Q		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1804	TSP type-1 2.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTTGCCCTCAGGACGGCTGCC	0.627													4	80					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149490518	149490518	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:149490518C>T	uc010lpk.2	+	40	5994	c.5994C>T	c.(5992-5994)TGC>TGT	p.C1998C		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1998	VWFC 2.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCGCACACTGCTCACCCTACT	0.672													3	19					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149502585	149502585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:149502585C>T	uc010lpk.2	+	58	8398	c.8398C>T	c.(8398-8400)CGT>TGT	p.R2800C		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2800	TSP type-1 7.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTGGCGCAGTCGTTCCCGACT	0.672													10	50					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149521723	149521723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:149521723G>A	uc010lpk.2	+	96	13802	c.13802G>A	c.(13801-13803)AGC>AAC	p.S4601N	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_Intron|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4601					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GCACCCCTCAGCCAGCAGCGC	0.697													4	13					0	0	1	0	0
LRRC61	65999	broad.mit.edu	37	7	150033974	150033974	+	Silent	SNP	G	A	A	rs138665596	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:150033974G>A	uc003wgv.2	+	3	698	c.24G>A	c.(22-24)CCG>CCA	p.P8P	LRRC61_uc003wgx.2_Silent_p.P8P|LRRC61_uc003wgw.2_Silent_p.P8P|LRRC61_uc003wgz.3_Silent_p.P8P	NM_023942	NP_076431	Q9BV99	LRC61_HUMAN	leucine rich repeat containing 61	8											0			OV - Ovarian serous cystadenocarcinoma(82;0.011)			CGGAGAAGCCGGGAGAGGCTG	0.637													4	61					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150164060	150164060	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:150164060C>T	uc003whj.2	+	2	604	c.274C>T	c.(274-276)CCC>TCC	p.P92S		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	92						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GCTCTCTGCTCCCAGCCTCCA	0.507													6	78					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150164064	150164064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:150164064G>A	uc003whj.2	+	2	608	c.278G>A	c.(277-279)AGC>AAC	p.S93N		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	93						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		TCTGCTCCCAGCCTCCATGCT	0.512													8	74					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150171384	150171384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:150171384G>A	uc003whj.2	+	4	1297	c.967G>A	c.(967-969)GGC>AGC	p.G323S		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	323						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		CATCTGTACAGGCCCCCATGC	0.428													5	37					0	0	1	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325007	150325007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:150325007C>T	uc003whn.2	-	3	1103	c.679G>A	c.(679-681)GAA>AAA	p.E227K	GIMAP6_uc003whm.2_Missense_Mutation_p.E147K	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	227							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TAATCTCCTTCGTTTTCCCAC	0.512													9	102					0	0	1	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417929	150417929	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:150417929C>T	uc003whq.2	+	3	924	c.837C>T	c.(835-837)GCC>GCT	p.A279A	GIMAP1_uc003whp.2_Silent_p.A287A	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	279	Helical; Anchor for type IV membrane protein; (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGGGCCTGGCCCTGCTGCTGG	0.711													4	19					0	0	1	0	0
TMEM176A	55365	broad.mit.edu	37	7	150499303	150499303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:150499303G>A	uc003whx.1	+	3	253	c.175G>A	c.(175-177)GTG>ATG	p.V59M	TMEM176B_uc003whu.3_5'Flank|TMEM176B_uc003whv.3_5'Flank|TMEM176B_uc003whw.3_5'Flank	NM_018487	NP_060957	Q96HP8	T176A_HUMAN	hepatocellular carcinoma-associated antigen 112	59	Helical; (Potential).					integral to membrane				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGTCTTTCAGGTGATGCAGAT	0.532													7	64					0	0	1	0	0
TMEM176A	55365	broad.mit.edu	37	7	150499346	150499346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:150499346G>A	uc003whx.1	+	3	296	c.218G>A	c.(217-219)GGA>GAA	p.G73E	TMEM176B_uc003whu.3_5'Flank|TMEM176B_uc003whv.3_5'Flank|TMEM176B_uc003whw.3_5'Flank	NM_018487	NP_060957	Q96HP8	T176A_HUMAN	hepatocellular carcinoma-associated antigen 112	73	Helical; (Potential).					integral to membrane				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTCCTAGGAGGATTTTTCTAC	0.572													4	68					0	0	1	0	0
ABP1	26	broad.mit.edu	37	7	150554093	150554093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:150554093G>A	uc003why.1	+	3	4753	c.535G>A	c.(535-537)GAC>AAC	p.D179N	ABP1_uc003whz.1_Missense_Mutation_p.D179N|ABP1_uc003wia.1_Missense_Mutation_p.D179N	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	179					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	AGACTGCCATGACAGATGCCT	0.567													6	56					0	0	1	0	0
ABP1	26	broad.mit.edu	37	7	150554581	150554581	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:150554581C>T	uc003why.1	+	3	5241	c.1023C>T	c.(1021-1023)TTC>TTT	p.F341F	ABP1_uc003whz.1_Silent_p.F341F|ABP1_uc003wia.1_Silent_p.F341F	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	341					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	ACGTGCACTTCGGCGGAGAGC	0.632													9	56					0	0	1	0	0
KCNH2	3757	broad.mit.edu	37	7	150649663	150649663	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:150649663G>A	uc003wic.2	-	6	1420	c.1407C>T	c.(1405-1407)ATC>ATT	p.I469I	KCNH2_uc003wib.2_Silent_p.I129I|KCNH2_uc011kux.1_Silent_p.I373I|KCNH2_uc003wid.2_Silent_p.I129I|KCNH2_uc003wie.2_Silent_p.I469I	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	469	Helical; Name=Segment S2; (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	TGCGGAAGTTGATGAGGATGT	0.607													20	92					0	0	1	0	0
KCNH2	3757	broad.mit.edu	37	7	150654410	150654410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:150654410C>T	uc003wic.2	-	5	1110	c.1097G>A	c.(1096-1098)CGA>CAA	p.R366Q	KCNH2_uc003wib.2_5'Flank|KCNH2_uc011kux.1_Missense_Mutation_p.R270Q|KCNH2_uc003wid.2_5'Flank|KCNH2_uc003wie.2_Missense_Mutation_p.R366Q	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	366	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	ATTGTGGGTTCGCTCCTTTAT	0.587													3	11					0	0	1	0	0
NOS3	4846	broad.mit.edu	37	7	150696053	150696053	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:150696053G>A	uc003wif.2	+	8	1132	c.836G>A	c.(835-837)TGG>TAG	p.W279*	NOS3_uc011kuy.1_Nonsense_Mutation_p.W73*|NOS3_uc011kuz.1_Nonsense_Mutation_p.W279*|NOS3_uc011kva.1_Nonsense_Mutation_p.W279*|NOS3_uc011kvb.1_Nonsense_Mutation_p.W279*	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	279	Interaction with NOSIP.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	CAGCACGGCTGGACCCCAGGA	0.657													7	41					0	0	1	0	0
GBX1	2636	broad.mit.edu	37	7	150846137	150846137	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:150846137C>T	uc011kvg.1	-	2	863	c.631G>A	c.(631-633)GGT>AGT	p.G211S		NM_001098834	NP_001092304	Q14549	GBX1_HUMAN	gastrulation brain homeo box 1	211						nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.00989)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCGCTGTCACCGCCTGAGCCC	0.612													19	330					0	0	1	0	0
PRKAG2	51422	broad.mit.edu	37	7	151372707	151372707	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:151372707G>A	uc003wkk.2	-	4	1094	c.483C>T	c.(481-483)TCC>TCT	p.S161S	PRKAG2_uc011kvl.1_Silent_p.S37S|PRKAG2_uc003wkj.2_Silent_p.S117S|PRKAG2_uc010lqe.1_RNA|PRKAG2_uc003wkm.1_Silent_p.S161S	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	161					ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		TTGACGGAGAGGAGGAGAGGC	0.582													9	82					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151877065	151877065	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:151877065G>A	uc003wla.2	-	37	7515	c.7296C>T	c.(7294-7296)TTC>TTT	p.F2432F	MLL3_uc003wkz.2_Silent_p.F1493F|MLL3_uc003wky.2_5'Flank	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2432	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGGGTCTGGTGAAAGCCTGGT	0.542			N		medulloblastoma								10	54					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151878414	151878414	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:151878414C>T	uc003wla.2	-	36	6750	c.6531G>A	c.(6529-6531)CAG>CAA	p.Q2177Q	MLL3_uc003wkz.2_Silent_p.Q1238Q	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2177	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGGTTTGGGGCTGCTGACTAT	0.473			N		medulloblastoma								9	58					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151945093	151945093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:151945093C>T	uc003wla.2	-	14	2645	c.2426G>A	c.(2425-2427)GGA>GAA	p.G809E		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	809					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		CATGATGTTTCCAGCAGAGGA	0.448			N		medulloblastoma								5	168					0	0	1	0	0
DPP6	1804	broad.mit.edu	37	7	154561131	154561131	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:154561131G>A	uc003wlk.2	+	9	1017	c.888G>A	c.(886-888)GAG>GAA	p.E296E	DPP6_uc003wli.2_Silent_p.E232E|DPP6_uc003wlm.2_Silent_p.E234E|DPP6_uc011kvq.1_Silent_p.E189E	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	296	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			CCTTAGAGGAGATTTTGAAGA	0.507													4	54					0	0	1	0	0
HTR5A	3361	broad.mit.edu	37	7	154875986	154875986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:154875986G>A	uc003wlu.1	+	2	927	c.863G>A	c.(862-864)GGC>GAC	p.G288D		NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	288	Helical; Name=6; (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		CTCATGGTGGGCATCCTCATT	0.632													6	68					0	0	1	0	0
HTR5A	3361	broad.mit.edu	37	7	154876092	154876092	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:154876092C>T	uc003wlu.1	+	2	1033	c.969C>T	c.(967-969)TTC>TTT	p.F323F		NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	323	Helical; Name=7; (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		AAAGCATCTTCCTGTGGCTTG	0.507													10	137					0	0	1	0	0
LMBR1	64327	broad.mit.edu	37	7	156480761	156480761	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:156480761G>A	uc003wmw.3	-	16	1565	c.1350C>T	c.(1348-1350)TTC>TTT	p.F450F	LMBR1_uc003wmv.3_Intron|LMBR1_uc003wmx.3_Silent_p.F298F|LMBR1_uc010lqn.2_Silent_p.F491F|LMBR1_uc011kvx.1_Intron	NM_022458	NP_071903	Q8WVP7	LMBR1_HUMAN	limb region 1 protein	450	Cytoplasmic (Potential).					integral to membrane	receptor activity				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.208)		CTGCAGAGGTGAATTTTCGGA	0.358													6	27					0	0	1	0	0
NOM1	64434	broad.mit.edu	37	7	156752695	156752695	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:156752695T>C	uc003wmy.2	+	4	1474	c.1459T>C	c.(1459-1461)TTG>CTG	p.L487L	NOM1_uc010lqp.1_5'Flank	NM_138400	NP_612409	Q5C9Z4	NOM1_HUMAN	nucleolar protein with MIF4G domain 1	487	MIF4G.				RNA metabolic process	nucleolus	protein binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00301)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		CTTCGACATTTTGAAAAAACT	0.388													7	43					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157926661	157926661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:157926661C>T	uc003wno.2	-	9	1385	c.1264G>A	c.(1264-1266)GAC>AAC	p.D422N	PTPRN2_uc003wnp.2_Missense_Mutation_p.D405N|PTPRN2_uc003wnq.2_Missense_Mutation_p.D422N|PTPRN2_uc003wnr.2_Missense_Mutation_p.D384N|PTPRN2_uc011kwa.1_Missense_Mutation_p.D445N	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	422	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CTCTCCATGTCGAGGGGCCTT	0.587													12	65					0	0	1	0	0
ESYT2	57488	broad.mit.edu	37	7	158590696	158590696	+	Silent	SNP	G	A	A	rs140317813	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:158590696G>A	uc003wob.1	-	3	654	c.588C>T	c.(586-588)GCC>GCT	p.A196A	ESYT2_uc003woc.1_Silent_p.A20A|ESYT2_uc003wod.1_Silent_p.A196A	NM_020728	NP_065779	A0FGR8	ESYT2_HUMAN	family with sequence similarity 62 (C2 domain	224						integral to membrane|plasma membrane				central_nervous_system(2)|kidney(1)	3						CTCCCCGCACGGCTGGTTCTA	0.453													11	51					0	0	1	0	0
VIPR2	7434	broad.mit.edu	37	7	158828674	158828674	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr7:158828674T>A	uc003woh.2	-	8	964	c.778A>T	c.(778-780)ACT>TCT	p.T260S	VIPR2_uc010lqx.2_RNA|VIPR2_uc010lqy.2_RNA	NM_003382	NP_003373	P41587	VIPR2_HUMAN	vasoactive intestinal peptide receptor 2	260	Helical; Name=4; (Potential).				cell-cell signaling	integral to plasma membrane				lung(1)|central_nervous_system(1)	2	Ovarian(565;0.152)	all_cancers(7;1.13e-11)|all_epithelial(9;0.000545)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)|STAD - Stomach adenocarcinoma(7;0.18)		CTGGCCGCAGTCCATGCACCG	0.607													6	25					0	0	1	0	0
ERICH1	157697	broad.mit.edu	37	8	665975	665975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:665975G>A	uc003wph.2	-	2	120	c.55C>T	c.(55-57)CCT>TCT	p.P19S	ERICH1_uc011kwh.1_Missense_Mutation_p.P19S|ERICH1_uc003wpe.1_Intron	NM_207332	NP_997215	Q86X53	ERIC1_HUMAN	glutamate-rich 1	19										large_intestine(2)	2		Colorectal(14;0.158)|Ovarian(12;0.17)|Myeloproliferative disorder(644;0.185)|Hepatocellular(245;0.236)		Epithelial(5;3.29e-14)|BRCA - Breast invasive adenocarcinoma(11;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(5;3.65e-06)|READ - Rectum adenocarcinoma(1;0.0325)		GGAACAGGAGGAAAAAGTCTC	0.458													9	82					0	0	1	0	0
DLGAP2	9228	broad.mit.edu	37	8	1645353	1645353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:1645353C>T	uc003wpl.2	+	11	2694	c.2597C>T	c.(2596-2598)GCC>GTC	p.A866V	DLGAP2_uc003wpm.2_Missense_Mutation_p.A852V	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	945					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		CAGGACCTGGCCGGCTACTGG	0.647													5	39					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2024297	2024297	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:2024297C>T	uc003wpx.3	+	11	1335	c.1197C>T	c.(1195-1197)GTC>GTT	p.V399V	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	399	Fibronectin type-III 1.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GGGACTACGTCATCGTGACCT	0.622													7	25					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2033496	2033496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:2033496G>A	uc003wpx.3	+	14	1756	c.1618G>A	c.(1618-1620)GAC>AAC	p.D540N	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	540	Fibronectin type-III 2.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CCGTGGCAAGGACCCGCTCAT	0.597													4	23					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2071212	2071213	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:2071212_2071213GG>AA	uc003wpx.3	+	29	3679_3680	c.3541_3542GG>AA	c.(3541-3543)GGA>AAA	p.G1181K	MYOM2_uc011kwi.1_Missense_Mutation_p.G606K	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1181	Ig-like C2-type 4.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CCTGGAGAGGGGAATCTGTGAG	0.421													5	42					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2071500	2071500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:2071500G>A	uc003wpx.3	+	30	3778	c.3640G>A	c.(3640-3642)GAA>AAA	p.E1214K	MYOM2_uc011kwi.1_Missense_Mutation_p.E639K	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1214					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GTCCATCCTTGAAATAGCTGG	0.403													4	48					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3224648	3224648	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:3224648C>T	uc011kwk.1	-	20	3414	c.3024G>A	c.(3022-3024)ACG>ACA	p.T1008T	CSMD1_uc011kwj.1_Silent_p.T400T|CSMD1_uc003wqe.2_Silent_p.T164T	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1008	Extracellular (Potential).|CUB 6.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTGCCTTGATCGTATGAGGCA	0.478													4	8					0	0	1	0	0
XKR5	389610	broad.mit.edu	37	8	6679555	6679555	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:6679555G>A	uc003wqp.2	-	5	665	c.643C>T	c.(643-645)CAC>TAC	p.H215Y	XKR5_uc003wqq.2_Missense_Mutation_p.H52Y|XKR5_uc003wqr.1_RNA	NM_207411	NP_997294	Q6UX68	XKR5_HUMAN	XK-related protein 5a	215	Helical; (Potential).					integral to membrane					0			STAD - Stomach adenocarcinoma(24;0.0984)	READ - Rectum adenocarcinoma(644;0.137)|COAD - Colon adenocarcinoma(149;0.166)		ACCAGCCAGTGGGCACCTGCA	0.622													3	11					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8197130	8197130	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:8197130C>T	uc003wsh.3	-	3	2178	c.2178G>A	c.(2176-2178)AAG>AAA	p.K726K		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	726							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						CAGAGCTGCTCTTGTTCATTT	0.473													10	55					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8235322	8235322	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:8235322G>A	uc003wsh.3	-	2	597	c.597C>T	c.(595-597)GAC>GAT	p.D199D		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	199							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						TGGAGGGCCGGTCTTGGTAAG	0.622													6	74					0	0	1	0	0
PRSS55	203074	broad.mit.edu	37	8	10387202	10387202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:10387202G>A	uc003wta.2	+	2	355	c.340G>A	c.(340-342)GAG>AAG	p.E114K	uc010lru.2_Intron|PRSS55_uc003wtb.2_RNA	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	114	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						ATATTCCGAGGAGCTGTTGTA	0.592													23	187					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10465046	10465046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:10465046C>T	uc003wtc.2	-	4	6791	c.6562G>A	c.(6562-6564)GAG>AAG	p.E2188K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	2188					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GGCTGGGCCTCCCCTTCTGCC	0.617													18	239					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10466082	10466082	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:10466082C>T	uc003wtc.2	-	4	5755	c.5526G>A	c.(5524-5526)GGG>GGA	p.G1842G		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1842					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GCTGGGCCTCCCCTTCAGCCT	0.627													21	186					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10467317	10467317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:10467317C>T	uc003wtc.2	-	4	4520	c.4291G>A	c.(4291-4293)GAA>AAA	p.E1431K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1431					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CTTCCTGCTTCCTCCTCCTGG	0.617													18	278					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10470177	10470177	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:10470177C>T	uc003wtc.2	-	4	1660	c.1431G>A	c.(1429-1431)GAG>GAA	p.E477E		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	477					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCACCCCGTCCTCCGGGGTCC	0.692													8	75					0	0	1	0	0
XKR6	286046	broad.mit.edu	37	8	10782217	10782217	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:10782217G>A	uc003wtk.1	-	2	915	c.888C>T	c.(886-888)TTC>TTT	p.F296F		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	296						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		CGCTCTCCAGGAAGGTCTCCA	0.517													10	73					0	0	1	0	0
MTMR9	66036	broad.mit.edu	37	8	11157626	11157626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:11157626C>T	uc003wtm.2	+	3	784	c.386C>T	c.(385-387)CCT>CTT	p.P129L	MTMR9_uc010lrx.2_Missense_Mutation_p.P22L|MTMR9_uc011kxa.1_Missense_Mutation_p.P44L	NM_015458	NP_056273	Q96QG7	MTMR9_HUMAN	myotubularin related protein 9	129	Myotubularin phosphatase.					cytoplasm	phosphatase activity|protein binding				0			STAD - Stomach adenocarcinoma(15;0.215)	COAD - Colon adenocarcinoma(149;0.0678)		TCCTTCCTTCCTGAGCAAGAA	0.408													5	35					0	0	1	0	0
FAM167A	83648	broad.mit.edu	37	8	11282031	11282031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:11282031C>T	uc010lry.1	-	3	1116	c.496G>A	c.(496-498)GAT>AAT	p.D166N	C8orf12_uc003wtu.2_Intron|C8orf12_uc003wtv.2_Intron|FAM167A_uc003wtw.2_Missense_Mutation_p.D166N	NM_053279	NP_444509	Q96KS9	F167A_HUMAN	hypothetical protein LOC83648	166											0						TAGGTGGCATCGTTGAGCATC	0.592													9	73					0	0	1	0	0
BLK	640	broad.mit.edu	37	8	11412923	11412923	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:11412923G>A	uc003wty.2	+	8	1283	c.702G>A	c.(700-702)TGG>TGA	p.W234*	BLK_uc003wtz.2_Nonsense_Mutation_p.W163*	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	234					intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		AGGATGAATGGGAGATCCCCC	0.597													4	63					0	0	1	0	0
DEFB136	613210	broad.mit.edu	37	8	11831592	11831592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:11831592G>A	uc011kxm.1	-	2	91	c.91C>T	c.(91-93)CGC>TGC	p.R31C		NM_001033018	NP_001028190	Q30KP8	DB136_HUMAN	beta-defensin 136 precursor	31					defense response to bacterium	extracellular region					0			STAD - Stomach adenocarcinoma(15;0.033)	COAD - Colon adenocarcinoma(149;0.163)		GTGCAGGTGCGAACTTTGACT	0.458													9	144					0	0	1	0	0
USP17L2	377630	broad.mit.edu	37	8	11996013	11996013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:11996013C>T	uc003wvc.1	-	1	257	c.257G>A	c.(256-258)GGA>GAA	p.G86E	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	86					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						GCAGGTATTTCCCATATTCTG	0.567													10	99					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	16026032	16026032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:16026032C>T	uc003wwz.2	-	4	763	c.565G>A	c.(565-567)GAT>AAT	p.D189N	MSR1_uc010lsu.2_Missense_Mutation_p.D207N|MSR1_uc003wxa.2_Missense_Mutation_p.D189N|MSR1_uc003wxb.2_Missense_Mutation_p.D189N|MSR1_uc011kxz.1_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	189	Potential.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		AGCTGCAAATCAAGCAATGTG	0.403													5	39					0	0	1	0	0
PDGFRL	5157	broad.mit.edu	37	8	17478672	17478672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:17478672G>A	uc003wxr.2	+	3	527	c.466G>A	c.(466-468)GAC>AAC	p.D156N		NM_006207	NP_006198	Q15198	PGFRL_HUMAN	platelet-derived growth factor receptor-like	156	Ig-like C2-type 1.					extracellular region	platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity				0				Colorectal(111;0.0752)		CTGCAGGAAGGACGAGGCCAA	0.527													4	29					0	0	1	0	0
PDGFRL	5157	broad.mit.edu	37	8	17491704	17491704	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:17491704G>A	uc003wxr.2	+	5	982	c.921G>A	c.(919-921)TGG>TGA	p.W307*		NM_006207	NP_006198	Q15198	PGFRL_HUMAN	platelet-derived growth factor receptor-like	307	Ig-like C2-type 2.					extracellular region	platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity				0				Colorectal(111;0.0752)		AGTTCACCTGGATCTTCCCAG	0.542													14	108					0	0	1	0	0
MTUS1	57509	broad.mit.edu	37	8	17541980	17541980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:17541980G>A	uc003wxv.2	-	7	3169	c.2695C>T	c.(2695-2697)CCT>TCT	p.P899S	MTUS1_uc003wxt.2_Missense_Mutation_p.P146S|MTUS1_uc011kyg.1_Missense_Mutation_p.P44S|MTUS1_uc010lsy.2_RNA|MTUS1_uc003wxw.2_Missense_Mutation_p.P845S|MTUS1_uc003wxs.2_Missense_Mutation_p.P65S|hsa-mir-548v|MI0014174_5'Flank	NM_001001924	NP_001001924	Q9ULD2	MTUS1_HUMAN	mitochondrial tumor suppressor 1 isoform 1	899						Golgi apparatus|microtubule|microtubule organizing center|mitochondrion|nucleus|plasma membrane|spindle				ovary(1)|skin(1)	2				Colorectal(111;0.0778)		GTTTTCTCAGGGGGCAGCGCA	0.428													20	191					0	0	1	0	0
MTUS1	57509	broad.mit.edu	37	8	17581265	17581265	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:17581265A>T	uc003wxv.2	-	4	2839	c.2365T>A	c.(2365-2367)TTG>ATG	p.L789M	MTUS1_uc003wxt.2_5'Flank|MTUS1_uc011kyg.1_5'Flank|MTUS1_uc010lsy.2_RNA|MTUS1_uc003wxw.2_Intron|MTUS1_uc010lsz.2_Missense_Mutation_p.L789M	NM_001001924	NP_001001924	Q9ULD2	MTUS1_HUMAN	mitochondrial tumor suppressor 1 isoform 1	789						Golgi apparatus|microtubule|microtubule organizing center|mitochondrion|nucleus|plasma membrane|spindle				ovary(1)|skin(1)	2				Colorectal(111;0.0778)		GGACTTTTCAAAGATGCTTTG	0.453													5	46					0	0	1	0	0
NAT1	9	broad.mit.edu	37	8	18079796	18079796	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:18079796C>T	uc010ltd.2	+	5	607	c.240C>T	c.(238-240)ACC>ACT	p.T80T	NAT1_uc003wyt.2_Silent_p.T142T|NAT1_uc003wyu.2_Silent_p.T80T|NAT1_uc003wyv.2_Silent_p.T80T|NAT1_uc010ltc.2_Silent_p.T80T|NAT1_uc003wys.2_Silent_p.T142T|NAT1_uc003wyr.2_Silent_p.T80T|NAT1_uc003wyq.2_Silent_p.T80T|NAT1_uc011kyl.1_Silent_p.T80T	NM_001160179	NP_001153651	P18440	ARY1_HUMAN	N-acetyltransferase 1 isoform a	80					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity				0				Colorectal(111;0.0519)|COAD - Colon adenocarcinoma(73;0.208)		GGGCTCTGACCACTATTGGTT	0.478													4	57					0	0	1	0	0
XPO7	23039	broad.mit.edu	37	8	21862530	21862530	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:21862530C>T	uc003xaa.3	+	28	3297	c.3195C>T	c.(3193-3195)TTC>TTT	p.F1065F	XPO7_uc010lti.2_Silent_p.F1074F|XPO7_uc010ltk.2_Silent_p.F1066F	NM_015024	NP_055839	Q9UIA9	XPO7_HUMAN	exportin 7 isoform b	1065					mRNA transport|protein export from nucleus|transmembrane transport	cytoplasm|nuclear pore	nuclear export signal receptor activity|protein transporter activity			ovary(1)|kidney(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5				Colorectal(74;0.0187)|COAD - Colon adenocarcinoma(73;0.0724)		TGTCAGCATTCCGTCGAGAAG	0.468													14	94					0	0	1	0	0
FAM160B2	64760	broad.mit.edu	37	8	21958475	21958475	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:21958475C>T	uc011kyx.1	+	12	1659	c.1608C>T	c.(1606-1608)ATC>ATT	p.I536I	FAM160B2_uc011kyy.1_RNA	NM_022749	NP_073586	Q86V87	F16B2_HUMAN	retinoic acid induced 16	536											0						TGACCGAGATCGTCAACAGGT	0.388													5	23					0	0	1	0	0
HR	55806	broad.mit.edu	37	8	21985022	21985022	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:21985022T>C	uc003xas.2	-	3	1598	c.933A>G	c.(931-933)ACA>ACG	p.T311T	HR_uc003xat.2_Silent_p.T311T	NM_005144	NP_005135	O43593	HAIR_HUMAN	hairless protein isoform a	311							DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		GGCACCTTGGTGTTGCTGGTG	0.647													3	28					0	0	1	0	0
PHYHIP	9796	broad.mit.edu	37	8	22078983	22078983	+	Silent	SNP	G	A	A	rs143500575	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:22078983G>A	uc003xbk.3	-	6	1570	c.876C>T	c.(874-876)GTC>GTT	p.V292V	PHYHIP_uc003xbj.3_Silent_p.V292V	NM_001099335	NP_001092805	Q92561	PHYIP_HUMAN	phytanoyl-CoA 2-hydroxylase interacting protein	292											0				Colorectal(74;0.0152)|COAD - Colon adenocarcinoma(73;0.0629)		GGGACAGGTCGACGGGCTCAG	0.602													7	120					0	0	1	0	0
POLR3D	661	broad.mit.edu	37	8	22105496	22105496	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:22105496C>T	uc003xbl.2	+	4	419	c.336C>T	c.(334-336)GGC>GGT	p.G112G	uc011kzd.1_5'Flank|MIR320A_hsa-mir-320a|MI0000542_5'Flank|POLR3D_uc003xbm.2_Silent_p.G112G|POLR3D_uc011kze.1_RNA	NM_001722	NP_001713	P05423	RPC4_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	112					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity				0				Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)		TTGAGCAGGGCCCAGCTGAAA	0.522													7	40					0	0	1	0	0
PIWIL2	55124	broad.mit.edu	37	8	22212977	22212977	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:22212977G>A	uc003xbn.2	+	23	3029	c.2881G>A	c.(2881-2883)GAA>AAA	p.E961K	PIWIL2_uc011kzf.1_Missense_Mutation_p.E925K|PIWIL2_uc010ltv.2_Missense_Mutation_p.E961K|PIWIL2_uc003xbo.2_Missense_Mutation_p.E115K	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	961				E -> G (in Ref. 2; BAB55155).	DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		CTTGCATCATGAACCAGCCAT	0.537													6	29					0	0	1	0	0
PDLIM2	64236	broad.mit.edu	37	8	22442594	22442594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:22442594C>T	uc003xby.2	+	5	780	c.380C>T	c.(379-381)TCC>TTC	p.S127F	PDLIM2_uc003xbx.1_Missense_Mutation_p.S127F|PDLIM2_uc003xbz.2_Missense_Mutation_p.S127F|PDLIM2_uc003xca.2_Missense_Mutation_p.S127F|PDLIM2_uc003xcb.2_Missense_Mutation_p.S127F|PDLIM2_uc003xcc.1_Missense_Mutation_p.S127F	NM_021630	NP_067643	Q96JY6	PDLI2_HUMAN	PDZ and LIM domain 2 isoform 2	127	Ser-rich.					actin cytoskeleton|cell surface|cytoplasm|focal adhesion|nucleus	zinc ion binding				0		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00579)|Colorectal(74;0.0152)|COAD - Colon adenocarcinoma(73;0.0626)		AGCCCAACCTCCCTCAGCCCG	0.622													6	95					0	0	1	0	0
TNFRSF10C	8794	broad.mit.edu	37	8	22960664	22960664	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:22960664C>T	uc003xcy.2	+	1	231	c.30C>T	c.(28-30)TTC>TTT	p.F10F	TNFRSF10C_uc003xcx.2_RNA|TNFRSF10C_uc011kzr.1_RNA	NM_003841	NP_003832	O14798	TR10C_HUMAN	tumor necrosis factor receptor superfamily,	10					apoptosis	anchored to membrane|integral to plasma membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		CCCTAAAGTTCGTCGTCGTCA	0.721													4	28					0	0	1	0	0
TNFRSF10C	8794	broad.mit.edu	37	8	22974328	22974328	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:22974328G>A	uc003xcy.2	+	5	765	c.564G>A	c.(562-564)GGG>GGA	p.G188G	TNFRSF10C_uc011kzr.1_RNA	NM_003841	NP_003832	O14798	TR10C_HUMAN	tumor necrosis factor receptor superfamily,	188	TAPE 2.				apoptosis	anchored to membrane|integral to plasma membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		CCAGCCCGGGGACTCCTGCCC	0.627													9	80					0	0	1	0	0
TNFRSF10D	8793	broad.mit.edu	37	8	23004504	23004504	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:23004504G>A	uc003xcz.1	-	4	544	c.452C>T	c.(451-453)TCC>TTC	p.S151F		NM_003840	NP_003831	Q9UBN6	TR10D_HUMAN	tumor necrosis factor receptor superfamily,	151	Extracellular (Potential).|TNFR-Cys 3.				anti-apoptosis|apoptosis	integral to membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		CATCTCAGGGGAGTTTTTATC	0.493													11	164					0	0	1	0	0
TNFRSF10A	8797	broad.mit.edu	37	8	23049399	23049399	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:23049399C>T	uc003xda.2	-	10	1280	c.1215G>A	c.(1213-1215)GGG>GGA	p.G405G		NM_003844	NP_003835	O00220	TR10A_HUMAN	tumor necrosis factor receptor superfamily,	405	Cytoplasmic (Potential).|Death.				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors		caspase activator activity|death receptor activity|TRAIL binding|transcription factor binding			central_nervous_system(3)|ovary(2)|skin(1)	6		Prostate(55;0.0421)|Breast(100;0.14)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)		ACAAGGCATCCCCTGGGCCTG	0.542													11	138					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24187543	24187543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:24187543G>A	uc003xdy.2	+	11	1101	c.1018G>A	c.(1018-1020)GAA>AAA	p.E340K	ADAM28_uc003xdx.2_Missense_Mutation_p.E340K|ADAM28_uc011kzz.1_Missense_Mutation_p.E107K|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.E27K	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	340	Peptidase M12B.|Extracellular (Potential).	By similarity.			proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		AATGGCACATGAAATGGGCCA	0.408													4	21					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24188792	24188792	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:24188792G>A	uc003xdy.2	+	12	1316	c.1233G>A	c.(1231-1233)GGG>GGA	p.G411G	ADAM28_uc003xdx.2_Silent_p.G411G|ADAM28_uc011kzz.1_Silent_p.G178G|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Silent_p.G98G	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	411	Disintegrin.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CAATTTGTGGGAACCAGTTGG	0.408													3	14					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24199170	24199170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:24199170G>A	uc003xdy.2	+	16	1813	c.1730G>A	c.(1729-1731)GGA>GAA	p.G577E	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.G264E	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	577	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CCCTGGAAAGGACGGATAGTG	0.428													12	50					0	0	1	0	0
ADAM7	8756	broad.mit.edu	37	8	24350089	24350089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:24350089G>A	uc003xeb.2	+	15	1747	c.1634G>A	c.(1633-1635)AGA>AAA	p.R545K	ADAM7_uc003xec.2_Missense_Mutation_p.R317K	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	545	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		AAGGAAAACAGATTTCTTCCC	0.388													4	20					0	0	1	0	0
DOCK5	80005	broad.mit.edu	37	8	25209303	25209304	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:25209303_25209304CC>TT	uc003xeg.2	+	27	2948_2949	c.2811_2812CC>TT	c.(2809-2814)AACCGG>AATTGG	p.R938W	DOCK5_uc010luf.1_RNA|DOCK5_uc003xeh.1_Missense_Mutation_p.R652W|DOCK5_uc003xei.2_Missense_Mutation_p.R508W|DOCK5_uc003xej.2_RNA	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	938						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		GAAGGATCAACCGGACAGTGAT	0.535													4	16					0	0	1	0	0
EBF2	64641	broad.mit.edu	37	8	25715851	25715851	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:25715851G>A	uc003xes.1	-	14	1529	c.1512C>T	c.(1510-1512)ACC>ACT	p.T504T	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	504	Pro/Ser/Thr-rich.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		AAGGAGAGCCGGTGGGTGAGC	0.473													11	44					0	0	1	0	0
EBF2	64641	broad.mit.edu	37	8	25897557	25897557	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:25897557C>T	uc003xes.1	-	5	486	c.469G>A	c.(469-471)GAA>AAA	p.E157K	PPP2R2A_uc003xek.2_Intron|EBF2_uc003xet.1_Missense_Mutation_p.E157K	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	157	C5-type (Potential).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		CACATCACTTCGTGCGTCAGG	0.587													24	122					0	0	1	0	0
Unknown	0	broad.mit.edu	37	8	26237320	26237320	+	RNA	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:26237320G>C	uc003xew.2	-	2		c.2629C>G								Homo sapiens cDNA clone IMAGE:4826633.																		CTTAAAACTCGACTGGTGCTG	0.463													6	34					0	0	1	0	0
BNIP3L	665	broad.mit.edu	37	8	26265853	26265853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:26265853C>T	uc003xex.1	+	5	696	c.572C>T	c.(571-573)CCA>CTA	p.P191L	BNIP3L_uc010luh.1_Missense_Mutation_p.P84L|BNIP3L_uc010lui.1_Missense_Mutation_p.P151L|BNIP3L_uc003xey.2_Missense_Mutation_p.P151L	NM_004331	NP_004322	O60238	BNI3L_HUMAN	BCL2/adenovirus E1B 19kD-interacting protein	191	Helical; (Potential).				apoptosis|defense response to virus|induction of apoptosis|interspecies interaction between organisms|mitochondrial protein catabolic process|negative regulation of survival gene product expression	endoplasmic reticulum|integral to membrane|mitochondrial outer membrane|nuclear envelope	lamin binding|protein heterodimerization activity|protein homodimerization activity				0		all_cancers(63;0.086)|Ovarian(32;2.61e-05)|all_epithelial(46;0.0514)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0019)|Epithelial(17;1.59e-12)|all cancers(2;3.75e-11)|OV - Ovarian serous cystadenocarcinoma(2;2.57e-08)|Colorectal(74;0.135)		GTGTTCATTCCATCTCTCTTC	0.413													7	101					0	0	1	0	0
DPYSL2	1808	broad.mit.edu	37	8	26484171	26484171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:26484171C>T	uc003xfb.1	+	5	867	c.517C>T	c.(517-519)CGC>TGC	p.R173C	DPYSL2_uc003xfa.2_Missense_Mutation_p.R278C|DPYSL2_uc011lag.1_Missense_Mutation_p.R173C|DPYSL2_uc010luk.1_RNA|DPYSL2_uc011lah.1_Missense_Mutation_p.R137C	NM_001386	NP_001377	Q16555	DPYL2_HUMAN	dihydropyrimidinase-like 2	173					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	dihydropyrimidinase activity|protein binding			large_intestine(1)	1		all_cancers(63;0.121)|Ovarian(32;2.68e-05)|all_epithelial(46;0.116)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;3.33e-10)|Colorectal(74;0.183)		TTTCAAAGATCGCTTCCAGCT	0.453													12	75					0	0	1	0	0
DPYSL2	1808	broad.mit.edu	37	8	26501100	26501100	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:26501100C>T	uc003xfb.1	+	9	1307	c.957C>T	c.(955-957)TCC>TCT	p.S319S	DPYSL2_uc003xfa.2_Silent_p.S424S|DPYSL2_uc011lag.1_Silent_p.S319S|DPYSL2_uc010luk.1_RNA|DPYSL2_uc011lah.1_Silent_p.S283S	NM_001386	NP_001377	Q16555	DPYL2_HUMAN	dihydropyrimidinase-like 2	319					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	dihydropyrimidinase activity|protein binding			large_intestine(1)	1		all_cancers(63;0.121)|Ovarian(32;2.68e-05)|all_epithelial(46;0.116)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;3.33e-10)|Colorectal(74;0.183)		TTCTCAACTCCTTGCTGTCCT	0.532													10	48					0	0	1	0	0
ADRA1A	148	broad.mit.edu	37	8	26627890	26627890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:26627890C>T	uc003xfh.1	-	2	1613	c.1177G>A	c.(1177-1179)GGC>AGC	p.G393S	ADRA1A_uc003xfc.1_Missense_Mutation_p.G393S|ADRA1A_uc010lul.1_Intron|ADRA1A_uc003xfd.1_Intron|ADRA1A_uc003xfe.1_Missense_Mutation_p.G393S|ADRA1A_uc010lum.1_Intron|ADRA1A_uc003xff.1_Intron|ADRA1A_uc003xfg.1_Missense_Mutation_p.G393S	NM_000680	NP_000671	P35348	ADA1A_HUMAN	alpha-1A-adrenergic receptor isoform 1	393	Cytoplasmic (By similarity).				activation of phospholipase C activity|aging|apoptosis|calcium ion transport into cytosol|cell-cell signaling|intracellular protein kinase cascade|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of synaptic transmission, GABAergic|positive regulation of action potential|positive regulation of cardiac muscle contraction|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase C signaling cascade|positive regulation of vasoconstriction|response to drug|response to hormone stimulus|response to stress|smooth muscle contraction	integral to plasma membrane	alpha1-adrenergic receptor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5		all_cancers(63;0.122)|Ovarian(32;2.61e-05)|all_epithelial(46;0.118)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;4.92e-10)|Colorectal(74;0.0132)|READ - Rectum adenocarcinoma(644;0.115)	Alfuzosin(DB00346)|Amiodarone(DB01118)|Amphetamine(DB00182)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Carvedilol(DB01136)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Epinastine(DB00751)|Epinephrine(DB00668)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Maprotiline(DB00934)|Mephentermine(DB01365)|Metaraminol(DB00610)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Nefazodone(DB01149)|Nicergoline(DB00699)|Nilutamide(DB00665)|Norepinephrine(DB00368)|Norgestrel(DB00506)|Oxymetazoline(DB00935)|Perphenazine(DB00850)|Phendimetrazine(DB01579)|Phenoxybenzamine(DB00925)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Prazosin(DB00457)|Promazine(DB00420)|Promethazine(DB01069)|Propericiazine(DB01608)|Propiomazine(DB00777)|Pseudoephedrine(DB00852)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Thioridazine(DB00679)|Tolazoline(DB00797)|Trazodone(DB00656)|Trifluoperazine(DB00831)|Ziprasidone(DB00246)	TCACAAACGCCATCCGTCTTG	0.562													8	83					0	0	1	0	0
STMN4	81551	broad.mit.edu	37	8	27100000	27100000	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:27100000T>A	uc003xfk.2	-	3	137	c.23A>T	c.(22-24)GAG>GTG	p.E8V	STMN4_uc003xfj.2_Missense_Mutation_p.E8V|STMN4_uc011lai.1_Missense_Mutation_p.E8V|STMN4_uc011laj.1_5'UTR|STMN4_uc011lak.1_Missense_Mutation_p.E8V|STMN4_uc010luo.2_Missense_Mutation_p.E8V			Q9H169	STMN4_HUMAN	RecName: Full=Stathmin-4; AltName: Full=Stathmin-like protein B3;          Short=RB3;	8					intracellular signal transduction					large_intestine(1)|pancreas(1)	2		Ovarian(32;0.00167)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0214)|Epithelial(17;9.82e-10)|Colorectal(74;0.142)		CTTCATCTTCTCTTTGTAGGC	0.577													5	28					0	0	1	0	0
PTK2B	2185	broad.mit.edu	37	8	27287662	27287662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:27287662G>A	uc003xfn.1	+	11	1412	c.604G>A	c.(604-606)GAG>AAG	p.E202K	PTK2B_uc003xfo.1_Missense_Mutation_p.E202K|PTK2B_uc003xfp.1_Missense_Mutation_p.E202K|PTK2B_uc003xfq.1_Missense_Mutation_p.E202K|PTK2B_uc010luq.1_5'Flank|PTK2B_uc003xfr.1_5'Flank	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	202	FERM.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		GTCCAACTTCGAGCTCCTAGA	0.547													40	239					0	0	1	0	0
PTK2B	2185	broad.mit.edu	37	8	27300482	27300482	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:27300482C>T	uc003xfn.1	+	27	2938	c.2130C>T	c.(2128-2130)TTC>TTT	p.F710F	PTK2B_uc003xfo.1_Silent_p.F710F|PTK2B_uc003xfp.1_Silent_p.F710F|PTK2B_uc003xfq.1_Silent_p.F710F|PTK2B_uc003xfr.1_Silent_p.F456F	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	710	Pro-rich.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		CCACAGCCTTCCAGGAACCCC	0.547													4	52					0	0	1	0	0
PTK2B	2185	broad.mit.edu	37	8	27301785	27301785	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:27301785C>T	uc003xfn.1	+	28	3019	c.2211C>T	c.(2209-2211)TTC>TTT	p.F737F	PTK2B_uc003xfo.1_Silent_p.F737F|PTK2B_uc003xfp.1_Silent_p.F737F|PTK2B_uc003xfq.1_Silent_p.F737F|PTK2B_uc003xfr.1_Silent_p.F483F	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	737	Pro-rich.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		AGCTGCAGTTCCAGGTAAAGA	0.547													5	51					0	0	1	0	0
SCARA3	51435	broad.mit.edu	37	8	27516190	27516190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:27516190C>T	uc003xga.1	+	5	644	c.503C>T	c.(502-504)TCC>TTC	p.S168F	SCARA3_uc003xgb.1_Missense_Mutation_p.S168F	NM_016240	NP_057324	Q6AZY7	SCAR3_HUMAN	scavenger receptor class A, member 3 isoform 1	168	Extracellular (Potential).				response to oxidative stress|UV protection	collagen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	scavenger receptor activity			skin(2)|ovary(1)|breast(1)	4		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Colorectal(74;0.148)		AGACAAATCTCCCAGGAGATG	0.612													4	57					0	0	1	0	0
SCARA3	51435	broad.mit.edu	37	8	27528508	27528509	+	Missense_Mutation	DNP	CA	AC	AC			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:27528508_27528509CA>AC	uc003xga.1	+	6	1602_1603	c.1461_1462CA>AC	c.(1459-1464)GGCAGC>GGACGC	p.S488R	SCARA3_uc003xgb.1_Intron	NM_016240	NP_057324	Q6AZY7	SCAR3_HUMAN	scavenger receptor class A, member 3 isoform 1	488	Collagen-like 1.|Extracellular (Potential).			S -> I (in Ref. 1; BAA86201).	response to oxidative stress|UV protection	collagen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	scavenger receptor activity			skin(2)|ovary(1)|breast(1)	4		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Colorectal(74;0.148)		GAGACCCCGGCAGCTTGGGCCC	0.678													7	77					0	0	1	0	0
C8orf80	389643	broad.mit.edu	37	8	27888772	27888772	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:27888772G>A	uc003xgm.3	-	15	2039	c.1896C>T	c.(1894-1896)TTC>TTT	p.F632F		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	632						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		CCTGGATCAGGAAATTTTTTT	0.448													11	118					0	0	1	0	0
C8orf80	389643	broad.mit.edu	37	8	27922053	27922053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:27922053C>T	uc003xgm.3	-	7	1050	c.907G>A	c.(907-909)GAG>AAG	p.E303K		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	303						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		TTCCACATCTCGTCCCTCTTG	0.493													4	35					0	0	1	0	0
ELP3	55140	broad.mit.edu	37	8	27995239	27995239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:27995239C>T	uc003xgo.3	+	10	1079	c.931C>T	c.(931-933)CGT>TGT	p.R311C	ELP3_uc003xgn.3_Missense_Mutation_p.R296C|ELP3_uc011laq.1_Missense_Mutation_p.R239C|ELP3_uc011lar.1_Missense_Mutation_p.R219C|ELP3_uc011las.1_Missense_Mutation_p.R192C|ELP3_uc011lat.1_Missense_Mutation_p.R192C	NM_018091	NP_060561	Q9H9T3	ELP3_HUMAN	elongation protein 3 homolog	311					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	histone acetyltransferase activity|iron-sulfur cluster binding|metal ion binding|phosphorylase kinase regulator activity|protein binding				0		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.127)|Kidney(114;0.151)|Colorectal(74;0.183)		CCCTGCTTTTCGTCCCGATGG	0.453													5	37					0	0	1	0	0
ZNF395	55893	broad.mit.edu	37	8	28209046	28209046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:28209046G>A	uc003xgq.2	-	7	1287	c.1199C>T	c.(1198-1200)TCC>TTC	p.S400F	ZNF395_uc003xgt.2_Missense_Mutation_p.S400F|ZNF395_uc003xgr.2_Missense_Mutation_p.S400F|ZNF395_uc003xgs.2_Missense_Mutation_p.S400F	NM_018660	NP_061130	Q9H8N7	ZN395_HUMAN	zinc finger protein 395	400					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding				0		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.102)|Kidney(114;0.123)|Colorectal(74;0.142)		GTGCCAGAAGGACCCAGGAGC	0.612													15	107					0	0	1	0	0
KIF13B	23303	broad.mit.edu	37	8	29004951	29004951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:29004951G>A	uc003xhh.3	-	17	2041	c.1982C>T	c.(1981-1983)TCG>TTG	p.S661L	KIF13B_uc003xhj.2_Missense_Mutation_p.S558L	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	661	Potential.				microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		AGCGCTGGGCGAGTGGAAAGA	0.557													4	7					0	0	1	0	0
GTF2E2	2961	broad.mit.edu	37	8	30437808	30437809	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:30437808_30437809GG>AA	uc003xig.2	-	7	1001_1002	c.748_749CC>TT	c.(748-750)CCA>TTA	p.P250L		NM_002095	NP_002086	P29084	T2EB_HUMAN	general transcription factor IIE, polypeptide 2,	250					regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	transcription factor TFIIE complex	DNA binding|protein binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.113)|Kidney(114;0.135)		CACTTTCTTTGGTCCAGATTCC	0.485													9	38					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30695435	30695435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:30695435C>T	uc003xil.2	-	3	7216	c.7216G>A	c.(7216-7218)GAC>AAC	p.D2406N		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2406										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		GCGCAAGTGTCTTTTGGGTTC	0.363													9	73					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30700988	30700988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:30700988G>A	uc003xil.2	-	1	5546	c.5546C>T	c.(5545-5547)CCA>CTA	p.P1849L		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1849										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CTGTTTTCCTGGATACGAATG	0.338													4	40					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30702528	30702528	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:30702528G>A	uc003xil.2	-	1	4006	c.4006C>T	c.(4006-4008)CAG>TAG	p.Q1336*		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1336										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		GCTGATAACTGAGGAATACTG	0.383													5	45					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30706323	30706323	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:30706323C>T	uc003xil.2	-	1	211	c.211G>A	c.(211-213)GAG>AAG	p.E71K	TEX15_uc011lbc.1_Missense_Mutation_p.E458K	NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	71										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TGCAAAACCTCATTTAAGCCT	0.408													4	42					0	0	1	0	0
NRG1	3084	broad.mit.edu	37	8	32453481	32453481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:32453481G>A	uc003xiv.2	+	2	753	c.236G>A	c.(235-237)CGA>CAA	p.R79Q	NRG1_uc003xip.2_Missense_Mutation_p.R294Q|NRG1_uc003xir.2_Missense_Mutation_p.R79Q|NRG1_uc010lvl.2_Missense_Mutation_p.R79Q|NRG1_uc010lvm.2_Missense_Mutation_p.R79Q|NRG1_uc010lvn.2_Missense_Mutation_p.R79Q|NRG1_uc003xis.2_Missense_Mutation_p.R79Q|NRG1_uc011lbf.1_Missense_Mutation_p.R79Q|NRG1_uc010lvo.2_Missense_Mutation_p.R79Q|NRG1_uc003xiu.2_Missense_Mutation_p.R79Q|NRG1_uc003xiw.2_Missense_Mutation_p.R79Q|NRG1_uc003xit.2_Missense_Mutation_p.R79Q|NRG1_uc010lvr.2_5'UTR|NRG1_uc010lvs.2_5'UTR|NRG1_uc010lvp.2_Missense_Mutation_p.R45Q|NRG1_uc010lvq.2_Missense_Mutation_p.R45Q	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	79	Extracellular (Potential).|Ig-like C2-type.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		GAATTGAATCGAAAAAACAAA	0.373													4	15					0	0	1	0	0
NRG1	3084	broad.mit.edu	37	8	32585531	32585532	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:32585531_32585532CT>TA	uc003xiv.2	+	6	1084_1085	c.567_568CT>TA	c.(565-570)TTCTGT>TTTAGT	p.C190S	NRG1_uc003xip.2_Missense_Mutation_p.C371S|NRG1_uc003xir.2_Missense_Mutation_p.C190S|NRG1_uc010lvl.2_Missense_Mutation_p.C173S|NRG1_uc010lvm.2_Missense_Mutation_p.C156S|NRG1_uc010lvn.2_Missense_Mutation_p.C156S|NRG1_uc003xis.2_Missense_Mutation_p.C190S|NRG1_uc011lbf.1_Missense_Mutation_p.C190S|NRG1_uc010lvo.2_Missense_Mutation_p.C190S|NRG1_uc003xiu.2_Missense_Mutation_p.C190S|NRG1_uc003xiw.2_Missense_Mutation_p.C190S|NRG1_uc003xit.2_Missense_Mutation_p.C190S|NRG1_uc010lvr.2_5'UTR|NRG1_uc010lvs.2_5'UTR|NRG1_uc010lvp.2_Missense_Mutation_p.C139S|NRG1_uc010lvq.2_Missense_Mutation_p.C122S|NRG1_uc003xix.2_Missense_Mutation_p.C80S|NRG1_uc003xiy.2_Missense_Mutation_p.C245S|NRG1_uc010lvt.2_Intron|NRG1_uc011lbg.1_Missense_Mutation_p.C36S|NRG1_uc011lbh.1_Missense_Mutation_p.C36S|NRG1_uc003xiz.1_RNA|NRG1_uc003xja.2_5'UTR	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	190	Extracellular (Potential).|EGF-like.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		AGAAAACTTTCTGTGTGAATGG	0.441													8	50					0	0	1	0	0
RNF122	79845	broad.mit.edu	37	8	33416214	33416214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:33416214G>A	uc003xjo.1	-	2	503	c.101C>T	c.(100-102)CCG>CTG	p.P34L		NM_024787	NP_079063	Q9H9V4	RN122_HUMAN	ring finger protein 122	34						endoplasmic reticulum|Golgi apparatus|integral to membrane	zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(67;0.0966)|Kidney(114;0.116)		GATGTTGAGCGGAAGGTCCTG	0.498													6	49					0	0	1	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37729474	37729474	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:37729474G>A	uc003xkm.1	-	4	2890	c.2846C>T	c.(2845-2847)TCT>TTT	p.S949F	RAB11FIP1_uc010lvz.1_Intron|RAB11FIP1_uc003xkn.1_Intron|RAB11FIP1_uc003xkl.1_Missense_Mutation_p.S278F|RAB11FIP1_uc003xko.1_Missense_Mutation_p.S278F|RAB11FIP1_uc003xkp.1_Intron	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	949					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			CATGATTGGAGATTTAAAATC	0.458													6	73					0	0	1	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37730366	37730366	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:37730366G>A	uc003xkm.1	-	4	1998	c.1954C>T	c.(1954-1956)CTG>TTG	p.L652L	RAB11FIP1_uc010lvz.1_Intron|RAB11FIP1_uc003xkn.1_Intron|RAB11FIP1_uc003xkl.1_5'UTR|RAB11FIP1_uc003xko.1_5'UTR|RAB11FIP1_uc003xkp.1_Intron	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	652					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			AGTGATCCCAGGGCAGAAGAA	0.512													12	101					0	0	1	0	0
GOT1L1	137362	broad.mit.edu	37	8	37791993	37791993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:37791993C>T	uc011lbj.1	-	9	1184	c.1084G>A	c.(1084-1086)GAA>AAA	p.E362K		NM_152413	NP_689626	Q8NHS2	AATC2_HUMAN	glutamic-oxaloacetic transaminase 1-like 1	362					biosynthetic process|cellular amino acid metabolic process	cytoplasm	pyridoxal phosphate binding|transaminase activity			ovary(1)	1	Colorectal(12;0.00627)	Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;1.37e-11)			ACCAGGTATTCCACCTGCTGG	0.418													6	121					0	0	1	0	0
RNF5P1	286140	broad.mit.edu	37	8	38458362	38458362	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:38458362G>A	uc003xly.2	-	1	414	c.357C>T	c.(355-357)TTC>TTT	p.F119F		NR_003129				SubName: Full=Putative uncharacterized protein RNF5;												0						ATGAGAAGTGGAAGCCCCCGG	0.572													21	345					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39442176	39442176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:39442176G>A	uc003xni.2	+	1	35	c.35G>A	c.(34-36)GGA>GAA	p.G12E	ADAM18_uc003xnh.2_Missense_Mutation_p.G12E|ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.G12E	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	12					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			ACTGAGCTTGGAAGACTGCAA	0.572													11	43					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39442827	39442827	+	Missense_Mutation	SNP	C	T	T	rs150907859	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:39442827C>T	uc003xni.2	+	2	88	c.88C>T	c.(88-90)CCA>TCA	p.P30S	ADAM18_uc003xnh.2_Missense_Mutation_p.P30S|ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.P30S	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	30					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			TGTCACAGTTCCACGGAAGAT	0.343													4	19					0	0	1	0	0
IDO1	3620	broad.mit.edu	37	8	39775688	39775688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:39775688G>A	uc003xnm.2	+	3	379	c.265G>A	c.(265-267)GCA>ACA	p.A89T	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	89					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	CATCACCATGGCATATGTGTG	0.413													6	90					0	0	1	0	0
IDO1	3620	broad.mit.edu	37	8	39776394	39776394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:39776394C>T	uc003xnm.2	+	4	478	c.364C>T	c.(364-366)CCT>TCT	p.P122S	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	122					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	GGAACTGCCTCCTATTTTGGT	0.373													4	68					0	0	1	0	0
IDO1	3620	broad.mit.edu	37	8	39780143	39780143	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:39780143G>A	uc003xnm.2	+	6	624	c.510G>A	c.(508-510)GTG>GTA	p.V170V	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	170					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	CTCTATTGGTGGAAATAGCAG	0.408													7	50					0	0	1	0	0
IDO2	169355	broad.mit.edu	37	8	39821178	39821178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:39821178C>T	uc010lwy.1	+	3	432	c.190C>T	c.(190-192)CCT>TCT	p.P64S	IDO2_uc003xno.1_RNA	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	51					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						CAACAAACTTCCTCAATTGAT	0.383													3	13					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41548061	41548061	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:41548061C>A	uc003xok.2	-	32	3999	c.3915G>T	c.(3913-3915)AAG>AAT	p.K1305N	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.K621N|ANK1_uc003xoi.2_Missense_Mutation_p.K1305N|ANK1_uc003xoj.2_Missense_Mutation_p.K1305N|ANK1_uc003xol.2_Missense_Mutation_p.K1305N|ANK1_uc003xom.2_Missense_Mutation_p.K1346N	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1305					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GGGCAGCTTTCTTCACAGGCA	0.557													6	102					0.0293803	0.0295883	1	1	0
ANK1	286	broad.mit.edu	37	8	41552702	41552702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:41552702C>T	uc003xok.2	-	27	3192	c.3108G>A	c.(3106-3108)ATG>ATA	p.M1036I	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.M352I|ANK1_uc003xoi.2_Missense_Mutation_p.M1036I|ANK1_uc003xoj.2_Missense_Mutation_p.M1036I|ANK1_uc003xol.2_Missense_Mutation_p.M1036I|ANK1_uc003xom.2_Missense_Mutation_p.M1077I	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1036					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TACCTTCGTCCATCCCGTTGA	0.602													18	206					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41552731	41552731	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:41552731T>G	uc003xok.2	-	27	3163	c.3079A>C	c.(3079-3081)AGC>CGC	p.S1027R	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.S343R|ANK1_uc003xoi.2_Missense_Mutation_p.S1027R|ANK1_uc003xoj.2_Missense_Mutation_p.S1027R|ANK1_uc003xol.2_Missense_Mutation_p.S1027R|ANK1_uc003xom.2_Missense_Mutation_p.S1068R	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1027					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TCCAGGTAGCTCTCTCCATAG	0.627													15	175					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41552765	41552765	+	Silent	SNP	G	A	A	rs112451551		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:41552765G>A	uc003xok.2	-	27	3129	c.3045C>T	c.(3043-3045)TCC>TCT	p.S1015S	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.S331S|ANK1_uc003xoi.2_Silent_p.S1015S|ANK1_uc003xoj.2_Silent_p.S1015S|ANK1_uc003xol.2_Silent_p.S1015S|ANK1_uc003xom.2_Silent_p.S1056S	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1015	ZU5.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CCTTCCACACGGAGCCGTTTT	0.622													19	112					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41572498	41572498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:41572498C>T	uc003xok.2	-	15	1781	c.1697G>A	c.(1696-1698)GGA>GAA	p.G566E	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.G566E|ANK1_uc003xoj.2_Missense_Mutation_p.G566E|ANK1_uc003xol.2_Missense_Mutation_p.G566E|ANK1_uc003xom.2_Missense_Mutation_p.G599E	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	566	89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			ACTCACTTTTCCGGCAGCATT	0.587													7	48					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41573208	41573208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:41573208G>A	uc003xok.2	-	14	1648	c.1564C>T	c.(1564-1566)CTT>TTT	p.L522F	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.L522F|ANK1_uc003xoj.2_Missense_Mutation_p.L522F|ANK1_uc003xol.2_Missense_Mutation_p.L522F|ANK1_uc003xom.2_Missense_Mutation_p.L555F	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	522	ANK 15.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TTTTCCAGAAGGGCCAGGACT	0.622													6	56					0	0	1	0	0
SLC20A2	6575	broad.mit.edu	37	8	42294771	42294771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:42294771G>A	uc010lxl.2	-	8	1953	c.1259C>T	c.(1258-1260)ACC>ATC	p.T420I	SLC20A2_uc010lxm.2_Missense_Mutation_p.T420I|SLC20A2_uc003xpe.2_Missense_Mutation_p.T420I|SLC20A2_uc011lcu.1_Missense_Mutation_p.T222I	NM_006749	NP_006740	Q08357	S20A2_HUMAN	solute carrier family 20, member 2	420	Cytoplasmic (Potential).				interspecies interaction between organisms	integral to plasma membrane|membrane fraction	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			ovary(2)	2	all_lung(13;8.33e-12)|Lung NSC(13;1.41e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;5.73e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00419)|Lung(22;0.0302)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GTAGGACACGGTGTCGCCCAC	0.637													4	53					0	0	1	0	0
SLC20A2	6575	broad.mit.edu	37	8	42294928	42294928	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:42294928C>A	uc010lxl.2	-	8	1796	c.1102G>T	c.(1102-1104)GAG>TAG	p.E368*	SLC20A2_uc010lxm.2_Nonsense_Mutation_p.E368*|SLC20A2_uc003xpe.2_Nonsense_Mutation_p.E368*|SLC20A2_uc011lcu.1_Nonsense_Mutation_p.E170*	NM_006749	NP_006740	Q08357	S20A2_HUMAN	solute carrier family 20, member 2	368	Cytoplasmic (Potential).				interspecies interaction between organisms	integral to plasma membrane|membrane fraction	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			ovary(2)	2	all_lung(13;8.33e-12)|Lung NSC(13;1.41e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;5.73e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00419)|Lung(22;0.0302)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GGCTTCTCCTCGGGGCCCCTG	0.597													6	214					1	1	1	1	0
CHRNA6	8973	broad.mit.edu	37	8	42611856	42611856	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:42611856G>A	uc003xpj.2	-	5	532	c.486C>T	c.(484-486)ATC>ATT	p.I162I	CHRNA6_uc011lcw.1_Silent_p.I147I	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	162	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GGAAAAAGGTGATATCCATAG	0.378													5	75					0	0	1	0	0
MCM4	4173	broad.mit.edu	37	8	48874166	48874166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:48874166C>T	uc003xqk.1	+	3	256	c.161C>T	c.(160-162)TCG>TTG	p.S54L	PRKDC_uc003xqi.2_5'Flank|PRKDC_uc003xqj.2_5'Flank|PRKDC_uc011ldh.1_5'Flank|MCM4_uc003xql.1_Missense_Mutation_p.S54L|MCM4_uc011ldi.1_Missense_Mutation_p.S54L|MCM4_uc010lxw.1_Intron	NM_182746	NP_877423	P33991	MCM4_HUMAN	minichromosome maintenance complex component 4	54					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(2)|skin(2)	4		all_cancers(86;0.026)|all_epithelial(80;0.000748)|Lung NSC(129;0.00327)|all_lung(136;0.00354)				ATGCCAACCTCGCCTGGAGTG	0.587													9	54					0	0	1	0	0
MCM4	4173	broad.mit.edu	37	8	48887386	48887387	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:48887386_48887387CC>TT	uc003xqk.1	+	15	2324_2325	c.2229_2230CC>TT	c.(2227-2232)GCCCAT>GCTTAT	p.H744Y	MCM4_uc003xql.1_Missense_Mutation_p.H744Y|MCM4_uc011ldi.1_Missense_Mutation_p.H731Y	NM_182746	NP_877423	P33991	MCM4_HUMAN	minichromosome maintenance complex component 4	744					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(2)|skin(2)	4		all_cancers(86;0.026)|all_epithelial(80;0.000748)|Lung NSC(129;0.00327)|all_lung(136;0.00354)				TAGCAGAAGCCCATGCTAAAGT	0.48													22	149					0	0	1	0	0
SNAI2	6591	broad.mit.edu	37	8	49833768	49833768	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:49833768G>A	uc003xqp.2	-	1	221	c.57C>T	c.(55-57)TAC>TAT	p.Y19Y		NM_003068	NP_003059	O43623	SNAI2_HUMAN	snail 2	19					canonical Wnt receptor signaling pathway|ectoderm and mesoderm interaction|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		all_cancers(86;0.0368)|all_epithelial(80;0.000624)|Lung NSC(129;0.0019)|all_lung(136;0.00502)				CCAGTTCGCTGTAGTTTGGCT	0.483													9	118					0	0	1	0	0
ST18	9705	broad.mit.edu	37	8	53084834	53084834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:53084834G>A	uc003xqz.2	-	5	743	c.587C>T	c.(586-588)TCT>TTT	p.S196F	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Missense_Mutation_p.S161F|ST18_uc011lds.1_Missense_Mutation_p.S101F|ST18_uc003xra.2_Missense_Mutation_p.S196F|ST18_uc003xrb.2_Missense_Mutation_p.S196F	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	196						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TGCACTTTCAGAGTTACTTTC	0.423													11	57					0	0	1	0	0
ST18	9705	broad.mit.edu	37	8	53084844	53084844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:53084844C>T	uc003xqz.2	-	5	733	c.577G>A	c.(577-579)GAA>AAA	p.E193K	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Missense_Mutation_p.E158K|ST18_uc011lds.1_Missense_Mutation_p.E98K|ST18_uc003xra.2_Missense_Mutation_p.E193K|ST18_uc003xrb.2_Missense_Mutation_p.E193K	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	193						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				GAGTTACTTTCATTGTCATCA	0.438													5	68					0	0	1	0	0
OPRK1	4986	broad.mit.edu	37	8	54141920	54141920	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:54141920G>A	uc003xrh.1	-	3	1455	c.1080C>T	c.(1078-1080)GTC>GTT	p.V360V	OPRK1_uc003xri.1_Silent_p.V360V|OPRK1_uc010lyc.1_Silent_p.V271V	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	360	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	CTGTATTTCGGACTCTGCTAG	0.483													6	29					0	0	1	0	0
RGS20	8601	broad.mit.edu	37	8	54791948	54791948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:54791948G>A	uc003xrp.2	+	2	388	c.296G>A	c.(295-297)CGG>CAG	p.R99Q	RGS20_uc003xrq.2_Intron|RGS20_uc010lye.2_Intron|RGS20_uc010lyf.2_Intron|RGS20_uc003xrr.2_5'Flank|RGS20_uc003xrs.2_5'Flank|RGS20_uc003xrt.2_5'Flank	NM_170587	NP_733466	O76081	RGS20_HUMAN	regulator of G-protein signaling 20 isoform a	99					negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|nucleus|plasma membrane	GTPase activator activity|protein binding|signal transducer activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(7;1.37e-06)|Epithelial(17;0.000126)|all cancers(17;0.0009)			GAGGCTCCCCGGAGGCGCCTG	0.731													7	53					0	0	1	0	0
TCEA1	6917	broad.mit.edu	37	8	54900748	54900748	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:54900748G>A	uc003xru.2	-	5	715	c.392C>T	c.(391-393)CCT>CTT	p.P131L	TCEA1_uc003xrv.2_Missense_Mutation_p.P110L|TCEA1_uc011ldw.1_Intron|TCEA1_uc003xrw.1_RNA	NM_006756	NP_006747	P23193	TCEA1_HUMAN	transcription elongation factor A 1 isoform 1	131					positive regulation of viral transcription|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	nucleoplasm	DNA binding|translation elongation factor activity|zinc ion binding				0		Lung NSC(129;0.109)|all_epithelial(80;0.11)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;9.1e-07)|Epithelial(17;9.44e-05)|all cancers(17;0.000699)			TGGTGCCCGAGGAAAGGATGA	0.463			T	PLAG1	salivary adenoma								3	20					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55533582	55533582	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:55533582G>A	uc003xsd.1	+	2	204	c.56G>A	c.(55-57)GGT>GAT	p.G19D	RP1_uc011ldy.1_Missense_Mutation_p.G19D	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	19					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TCTTCTGAAGGTCAAGTTCCA	0.488													9	79					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55540475	55540475	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:55540475T>A	uc003xsd.1	+	4	4181	c.4033T>A	c.(4033-4035)TTA>ATA	p.L1345I	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1345					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CATTGACTTTTTAAACTCCAA	0.383													5	41					0	0	1	0	0
TGS1	96764	broad.mit.edu	37	8	56699001	56699001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:56699001C>T	uc003xsj.3	+	4	931	c.544C>T	c.(544-546)CCT>TCT	p.P182S	TGS1_uc010lyh.2_Missense_Mutation_p.P86S	NM_024831	NP_079107	Q96RS0	TGS1_HUMAN	trimethylguanosine synthase homolog	182					cellular lipid metabolic process|ncRNA metabolic process|regulation of transcription, DNA-dependent|RNA capping|spliceosomal snRNP assembly|transcription, DNA-dependent	Cajal body|cytosol	RNA trimethylguanosine synthase activity			ovary(1)|lung(1)|breast(1)	3		all_lung(136;0.119)|all_epithelial(80;0.125)|Lung NSC(129;0.147)	Epithelial(17;0.00027)|all cancers(17;0.00251)			GACAGAAAATCCTCCAGTTGA	0.368													3	16					0	0	1	0	0
LYN	4067	broad.mit.edu	37	8	56882295	56882295	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:56882295G>A	uc003xsk.3	+	10	1275	c.993G>A	c.(991-993)CTG>CTA	p.L331L	LYN_uc003xsl.3_Silent_p.L310L	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	331	Protein kinase.				erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			TGGATTTCCTGAAGAGCGATG	0.403													8	86					0	0	1	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228585	57228585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:57228585C>T	uc003xsy.1	-	2	960	c.322G>A	c.(322-324)GTA>ATA	p.V108I	SDR16C5_uc010lyk.1_Missense_Mutation_p.V108I|SDR16C5_uc010lyl.1_Missense_Mutation_p.V108I	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	108					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TGGTCGGCTACTCTATACACT	0.463													9	104					0	0	1	0	0
PENK	5179	broad.mit.edu	37	8	57354177	57354177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:57354177G>A	uc003xsz.2	-	2	539	c.458C>T	c.(457-459)TCC>TTC	p.S153F	PENK_uc003xta.3_Missense_Mutation_p.S153F	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	153					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CAGGTCTGAGGAATTGGCCAG	0.527													7	108					0	0	1	0	0
CHD7	55636	broad.mit.edu	37	8	61749456	61749456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:61749456C>T	uc003xue.2	+	17	4547	c.4070C>T	c.(4069-4071)TCT>TTT	p.S1357F		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1357	Helicase C-terminal.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			AAACCTGATTCTGATAGGTTT	0.478													8	74					0	0	1	0	0
CHD7	55636	broad.mit.edu	37	8	61765757	61765757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:61765757C>T	uc003xue.2	+	31	6950	c.6473C>T	c.(6472-6474)TCA>TTA	p.S2158L		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2158					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			CCAGTCATCTCATCTGCTCAT	0.473													4	20					0	0	1	0	0
CLVS1	157807	broad.mit.edu	37	8	62370894	62370894	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:62370894G>A	uc003xuh.2	+	5	1094	c.770G>A	c.(769-771)AGC>AAC	p.S257N	CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Intron	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	257	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						AATTTAAACAGCCTTCACCAG	0.398													6	56					0	0	1	0	0
ASPH	444	broad.mit.edu	37	8	62465666	62465666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:62465666G>A	uc003xuj.2	-	20	1819	c.1550C>T	c.(1549-1551)TCC>TTC	p.S517F	ASPH_uc011leg.1_Missense_Mutation_p.S488F	NM_004318	NP_004309	Q12797	ASPH_HUMAN	aspartate beta-hydroxylase isoform a	517	TPR 3.|Lumenal (Potential).				muscle contraction	integral to endoplasmic reticulum membrane	calcium ion binding|electron carrier activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|structural constituent of muscle			ovary(3)	3	Lung SC(2;0.153)	Lung NSC(129;0.0358)|all_lung(136;0.0654)|all_epithelial(80;0.101)			L-Aspartic Acid(DB00128)|Succinic acid(DB00139)	AGGATCTCCGGATTCTATTCC	0.393													13	64					0	0	1	0	0
CYP7B1	9420	broad.mit.edu	37	8	65527617	65527617	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:65527617G>A	uc003xvj.2	-	4	1227	c.1023C>T	c.(1021-1023)CTC>CTT	p.L341L		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	341					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				GTTCTCTGGTGAGGTGGATGG	0.448													5	14					0	0	1	0	0
ARMC1	55156	broad.mit.edu	37	8	66534583	66534583	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:66534583G>A	uc003xvl.2	-	3	425	c.190C>T	c.(190-192)CGA>TGA	p.R64*	ARMC1_uc011leo.1_Missense_Mutation_p.S25L	NM_018120	NP_060590	Q9NVT9	ARMC1_HUMAN	armadillo repeat-containing protein	64	ARM.				metal ion transport		metal ion binding			skin(1)	1			Epithelial(68;0.103)|OV - Ovarian serous cystadenocarcinoma(28;0.235)			GCCAAGTATCGAAGAGCCTAC	0.353													7	74					0	0	1	0	0
DNAJC5B	85479	broad.mit.edu	37	8	66988935	66988935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:66988935G>A	uc003xvs.1	+	4	451	c.160G>A	c.(160-162)GAT>AAT	p.D54N	DNAJC5B_uc003xvt.1_RNA	NM_033105	NP_149096	Q9UF47	DNJ5B_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	54	J.				protein folding	membrane	heat shock protein binding|unfolded protein binding				0		Lung NSC(129;0.114)|all_lung(136;0.188)	Epithelial(68;0.0213)|all cancers(69;0.0839)|BRCA - Breast invasive adenocarcinoma(89;0.0886)|OV - Ovarian serous cystadenocarcinoma(28;0.112)			GAATCCAGATGATCCAGCTGC	0.403													6	44					0	0	1	0	0
TRIM55	84675	broad.mit.edu	37	8	67066400	67066400	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:67066400A>G	uc003xvv.2	+	9	1581	c.1355A>G	c.(1354-1356)AAA>AGA	p.K452R	TRIM55_uc003xvu.2_Missense_Mutation_p.K452R|TRIM55_uc003xvw.2_Intron|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	452						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			CAAACCCGGAAAGCCACCACC	0.557													3	23					0	0	1	0	0
MYBL1	4603	broad.mit.edu	37	8	67485678	67485678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:67485678G>A	uc003xwj.2	-	11	1941	c.1534C>T	c.(1534-1536)CCT>TCT	p.P512S	MYBL1_uc003xwl.2_Missense_Mutation_p.P512S|MYBL1_uc003xwk.2_Missense_Mutation_p.P511S	NM_001080416	NP_001073885	P10243	MYBA_HUMAN	v-myb myeloblastosis viral oncogene homolog	512	Negative regulatory domain (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)	3			Epithelial(68;0.00211)|all cancers(69;0.00726)|OV - Ovarian serous cystadenocarcinoma(28;0.00989)|BRCA - Breast invasive adenocarcinoma(89;0.0938)			CCACAAATAGGGGTTGATGTA	0.343													6	59					0	0	1	0	0
C8orf45	157777	broad.mit.edu	37	8	67786609	67786609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:67786609C>T	uc003xwz.3	+	3	314	c.143C>T	c.(142-144)CCC>CTC	p.P48L	C8orf45_uc003xwv.2_Missense_Mutation_p.P48L|C8orf45_uc011lev.1_Missense_Mutation_p.P48L|C8orf45_uc011lew.1_Intron|C8orf45_uc011lex.1_Intron|C8orf45_uc003xwy.3_Missense_Mutation_p.P48L	NM_173518	NP_775789	Q4G0Z9	CH045_HUMAN	minichromosome maintenance complex	48					DNA replication		ATP binding|DNA binding			ovary(1)	1	Breast(64;0.186)		Epithelial(68;0.00384)|OV - Ovarian serous cystadenocarcinoma(28;0.00913)|all cancers(69;0.0175)|BRCA - Breast invasive adenocarcinoma(89;0.206)			TTAATAAATCCCTCTGATGTT	0.308													4	37					0	0	1	0	0
CPA6	57094	broad.mit.edu	37	8	68658271	68658271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:68658271G>A	uc003xxq.3	-	1	350	c.94C>T	c.(94-96)CTT>TTT	p.L32F	CPA6_uc003xxr.3_5'UTR|CPA6_uc003xxs.2_Missense_Mutation_p.L32F	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor	32					proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			TTGTTATAAAGGTGGCTGTGC	0.532													4	22					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68939533	68939533	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:68939533T>C	uc003xxv.1	+	5	545	c.518T>C	c.(517-519)ATA>ACA	p.I173T	PREX2_uc003xxu.1_Missense_Mutation_p.I173T|PREX2_uc011lez.1_Missense_Mutation_p.I108T	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	173	DH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						ATACAAAGAATATGCAAGTAC	0.338													2	7					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68984762	68984762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:68984762C>T	uc003xxv.1	+	14	1553	c.1526C>T	c.(1525-1527)TCT>TTT	p.S509F	PREX2_uc003xxu.1_Missense_Mutation_p.S509F|PREX2_uc011lez.1_Missense_Mutation_p.S444F	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	509	DEP 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						ACCTACAAATCTGTGGTCATG	0.338													5	43					0	0	1	0	0
SULF1	23213	broad.mit.edu	37	8	70476323	70476323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:70476323G>A	uc010lza.1	+	5	830	c.113G>A	c.(112-114)CGA>CAA	p.R38Q	SULF1_uc003xyd.2_Missense_Mutation_p.R38Q|SULF1_uc003xye.2_Missense_Mutation_p.R38Q|SULF1_uc003xyf.2_Missense_Mutation_p.R38Q|SULF1_uc003xyg.2_Missense_Mutation_p.R38Q	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	38					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			CAGCAGGAACGAAAAAACATC	0.493													7	43					0	0	1	0	0
SULF1	23213	broad.mit.edu	37	8	70541910	70541910	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:70541910G>A	uc010lza.1	+	19	2997	c.2280G>A	c.(2278-2280)TGG>TGA	p.W760*	SULF1_uc003xyd.2_Nonsense_Mutation_p.W760*|SULF1_uc003xye.2_Nonsense_Mutation_p.W760*|SULF1_uc003xyf.2_Nonsense_Mutation_p.W760*|SULF1_uc003xyg.2_Nonsense_Mutation_p.W760*|SULF1_uc003xyh.1_RNA|SULF1_uc003xyi.1_5'UTR	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	760					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			CCCCGTTCTGGAACCGTAAGT	0.517													20	110					0	0	1	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70591773	70591773	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:70591773G>A	uc003xyl.2	-	8	2571	c.1864C>T	c.(1864-1866)CGT>TGT	p.R622C	SLCO5A1_uc010lzb.2_Missense_Mutation_p.R567C|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_Missense_Mutation_p.R622C	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	622	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			ATAACCACACGGAGCTGACTT	0.443													4	98					0	0	1	0	0
PRDM14	63978	broad.mit.edu	37	8	70964488	70964488	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:70964488C>T	uc003xym.2	-	8	1742	c.1540G>A	c.(1540-1542)GAG>AAG	p.E514K		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	514					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			AAGGGCTTCTCCCCGGAGTGC	0.512													21	97					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73848772	73848772	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:73848772G>A	uc003xzb.2	+	3	1770	c.1182G>A	c.(1180-1182)GGG>GGA	p.G394G		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	394					regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CATTACTAGGGAAAATTGTGG	0.438													5	44					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73848925	73848925	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:73848925G>A	uc003xzb.2	+	3	1923	c.1335G>A	c.(1333-1335)AGG>AGA	p.R445R		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	445	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GGGCCAAAAGGAACGGAAGCA	0.448													13	57					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73849870	73849871	+	Missense_Mutation	DNP	CC	AT	AT	rs115151346	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:73849870_73849871CC>AT	uc003xzb.2	+	3	2868_2869	c.2280_2281CC>AT	c.(2278-2283)ACCCCC>ACATCC	p.P761S		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	761	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TAGAAGAAACCCCCTCCCAGGG	0.589													8	88					0	0	1	0	0
RPL7	6129	broad.mit.edu	37	8	74204120	74204120	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:74204120G>A	uc003xzg.2	-	4	338	c.316C>T	c.(316-318)CGA>TGA	p.R106*	RPL7_uc003xzh.1_Nonsense_Mutation_p.R66*	NM_000971	NP_000962	P18124	RL7_HUMAN	ribosomal protein L7	106					endocrine pancreas development|ribosomal large subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	DNA binding|mRNA binding|protein homodimerization activity|structural constituent of ribosome				0	Breast(64;0.0954)		Epithelial(68;0.0193)|all cancers(69;0.0766)|BRCA - Breast invasive adenocarcinoma(89;0.134)			AACACCTTTCGAACCTTTGGG	0.398													9	69					0	0	1	0	0
JPH1	56704	broad.mit.edu	37	8	75157289	75157289	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:75157289C>T	uc003yae.2	-	4	1420	c.1380G>A	c.(1378-1380)ACG>ACA	p.T460T	JPH1_uc003yaf.2_Silent_p.T460T|JPH1_uc003yag.1_Silent_p.T324T	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	460	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			TTGGGGGTGTCGTGCCTTTGC	0.507													15	91					0	0	1	0	0
JPH1	56704	broad.mit.edu	37	8	75227617	75227617	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:75227617C>T	uc003yae.2	-	2	658	c.618G>A	c.(616-618)AAG>AAA	p.K206K	JPH1_uc003yaf.2_Silent_p.K206K|JPH1_uc003yag.1_Silent_p.K70K	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	206	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			CGCCCTTCTTCTTGCCCGCTA	0.652													7	71					0	0	1	0	0
JPH1	56704	broad.mit.edu	37	8	75227750	75227750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:75227750G>A	uc003yae.2	-	2	525	c.485C>T	c.(484-486)TCG>TTG	p.S162L	JPH1_uc003yaf.2_Missense_Mutation_p.S162L|JPH1_uc003yag.1_Missense_Mutation_p.S26L	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	162	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			CGAGGCCAGCGAGGTACGCAG	0.731													5	31					0	0	1	0	0
HNF4G	3174	broad.mit.edu	37	8	76465412	76465412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:76465412G>A	uc003yaq.2	+	6	754	c.484G>A	c.(484-486)GAA>AAA	p.E162K	HNF4G_uc003yar.2_Missense_Mutation_p.E199K	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	162					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			TGCCTTCTGTGAATTACCATT	0.323													3	7					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77618521	77618521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:77618521G>A	uc003yav.2	+	2	2585	c.2198G>A	c.(2197-2199)GGC>GAC	p.G733D	ZFHX4_uc003yat.1_Missense_Mutation_p.G733D|ZFHX4_uc003yau.1_Missense_Mutation_p.G733D|ZFHX4_uc003yaw.1_Missense_Mutation_p.G733D	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	733						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CTCCAAAATGGCAATGGTGAG	0.522										HNSCC(33;0.089)			4	17					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766120	77766120	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:77766120C>T	uc003yav.2	+	10	7215	c.6828C>T	c.(6826-6828)TTC>TTT	p.F2276F	ZFHX4_uc003yau.1_Silent_p.F2321F|ZFHX4_uc003yaw.1_Silent_p.F2276F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2276	C2H2-type 15; degenerate.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ATGTGGTTTTCCCCAGGATCT	0.393										HNSCC(33;0.089)			9	49					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77775626	77775626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:77775626C>T	uc003yav.2	+	11	9928	c.9541C>T	c.(9541-9543)CTT>TTT	p.L3181F		NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3177						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CTCATCTGCTCTTTCAGTGTT	0.423										HNSCC(33;0.089)			5	27					0	0	1	0	0
PEX2	5828	broad.mit.edu	37	8	77895944	77895944	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:77895944G>A	uc003yax.2	-	4	929	c.471C>T	c.(469-471)TTC>TTT	p.F157F	PEX2_uc003yay.2_Silent_p.F157F|PEX2_uc003yaz.2_Silent_p.F157F	NM_000318	NP_000309	P28328	PEX2_HUMAN	peroxin 2	157	Helical; (Potential).				peroxisome organization	integral to peroxisomal membrane	protein binding|zinc ion binding			ovary(1)	1						CCCTCTGAAGGAAAATCAAAA	0.363													5	48					0	0	1	0	0
ZNF704	619279	broad.mit.edu	37	8	81733756	81733756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:81733756G>A	uc003yby.1	-	2	306	c.74C>T	c.(73-75)TCC>TTC	p.S25F		NM_001033723	NP_001028895	Q6ZNC4	ZN704_HUMAN	zinc finger protein 704	25						intracellular	zinc ion binding				0	all_cancers(3;8.53e-08)|all_epithelial(4;4.59e-10)|Breast(3;2.56e-06)|Lung NSC(7;2.58e-06)|all_lung(9;9.4e-06)		BRCA - Breast invasive adenocarcinoma(6;0.00401)|Epithelial(68;0.00448)|all cancers(69;0.0277)			CATGGCCAAGGAAAACACGTG	0.453													22	111					0	0	1	0	0
CA13	377677	broad.mit.edu	37	8	86180773	86180773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:86180773C>T	uc003ydg.2	+	6	928	c.586C>T	c.(586-588)CCT>TCT	p.P196S	CA13_uc003ydf.1_RNA	NM_198584	NP_940986	Q8N1Q1	CAH13_HUMAN	carbonic anhydrase XIII	196					one-carbon metabolic process		carbonate dehydratase activity|zinc ion binding				0						CTGGACATATCCTGGTTCTCT	0.408													4	29					0	0	1	0	0
ATP6V0D2	245972	broad.mit.edu	37	8	87151823	87151823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:87151823C>T	uc003ydp.1	+	3	509	c.440C>T	c.(439-441)CCT>CTT	p.P147L		NM_152565	NP_689778	Q8N8Y2	VA0D2_HUMAN	ATPase, H+ transporting, lysosomal 38kDa, V0	147					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	apical plasma membrane|endosome membrane|proton-transporting V-type ATPase, V0 domain|vacuolar proton-transporting V-type ATPase complex	hydrogen ion transmembrane transporter activity|protein binding				0						GCAGAGACACCTTCAGATCTC	0.413													9	23					0	0	1	0	0
WWP1	11059	broad.mit.edu	37	8	87410599	87410599	+	Silent	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:87410599T>A	uc003ydt.2	+	6	643	c.363T>A	c.(361-363)CTT>CTA	p.L121L	WWP1_uc010mai.2_5'UTR	NM_007013	NP_008944	Q9H0M0	WWP1_HUMAN	WW domain containing E3 ubiquitin protein ligase	121					central nervous system development|entry of virus into host cell|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|signal transduction	cytoplasm|nucleus|plasma membrane|ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			lung(1)|liver(1)	2						AATTAAAACTTTCCTTGGAAA	0.328													4	34					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87591016	87591016	+	Silent	SNP	C	T	T	rs142347723		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:87591016C>T	uc003ydx.2	-	17	2050	c.2004G>A	c.(2002-2004)CCG>CCA	p.P668P	CNGB3_uc010maj.2_Silent_p.P525P	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	668	Cytoplasmic (Potential).|cGMP (By similarity).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TCTCTTCTTTCGGTGGGAAGA	0.473													11	46					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87680271	87680271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:87680271G>A	uc003ydx.2	-	5	665	c.619C>T	c.(619-621)CCA>TCA	p.P207S	CNGB3_uc010maj.2_Missense_Mutation_p.P69S	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	207	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						ATGCTGTTTGGAAGTTTAATT	0.388													5	65					0	0	1	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885275	88885275	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:88885275C>T	uc003ydz.2	-	1	1022	c.925G>A	c.(925-927)GAA>AAA	p.E309K		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	309										ovary(1)	1						ACATGACCTTCGTACTGTGTT	0.517													5	46					0	0	1	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885348	88885348	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:88885348G>A	uc003ydz.2	-	1	949	c.852C>T	c.(850-852)TTC>TTT	p.F284F		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	284	WD 1.									ovary(1)	1						ATGACACCAGGAATTGGCCAT	0.498													12	46					0	0	1	0	0
OSGIN2	734	broad.mit.edu	37	8	90937078	90937078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:90937078C>T	uc003yeg.2	+	6	1182	c.836C>T	c.(835-837)CCT>CTT	p.P279L	OSGIN2_uc003yeh.2_Missense_Mutation_p.P323L	NM_004337	NP_004328	Q9Y236	OSGI2_HUMAN	oxidative stress induced growth inhibitor family	279					germ cell development|meiosis						0			BRCA - Breast invasive adenocarcinoma(11;0.0344)			GAAGATTTTCCTTTTGTGTTT	0.453													3	18					0	0	1	0	0
CALB1	793	broad.mit.edu	37	8	91072412	91072412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:91072412C>T	uc003yel.1	-	11	957	c.775G>A	c.(775-777)GGG>AGG	p.G259R	CALB1_uc011lge.1_Missense_Mutation_p.G202R	NM_004929	NP_004920	P05937	CALB1_HUMAN	calbindin 1	259						nucleus	calcium ion binding|vitamin D binding			pancreas(1)	1			BRCA - Breast invasive adenocarcinoma(11;0.00953)			TAGTTATCCCCAGCACAGAGA	0.393													6	24					0	0	1	0	0
RUNX1T1	862	broad.mit.edu	37	8	93017384	93017384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:93017384G>A	uc003yfd.2	-	5	784	c.700C>T	c.(700-702)CTC>TTC	p.L234F	RUNX1T1_uc003yfc.1_Missense_Mutation_p.L207F|RUNX1T1_uc003yfe.1_Missense_Mutation_p.L197F|RUNX1T1_uc010mao.2_Missense_Mutation_p.L207F|RUNX1T1_uc011lgi.1_Missense_Mutation_p.L245F|RUNX1T1_uc003yfb.1_Missense_Mutation_p.L197F|RUNX1T1_uc003yff.1_Missense_Mutation_p.L197F	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	234					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TTCACATCGAGAAGCAGCTCT	0.557													6	50					0	0	1	0	0
RBM12B	389677	broad.mit.edu	37	8	94746604	94746604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:94746604G>A	uc003yfz.2	-	3	2228	c.2035C>T	c.(2035-2037)CCA>TCA	p.P679S		NM_203390	NP_976324	Q8IXT5	RB12B_HUMAN	RNA binding motif protein 12B	679							nucleotide binding|RNA binding				0	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			TCCTCCTCTGGGGGCCGTCTC	0.627													5	106					0	0	1	0	0
TMEM67	91147	broad.mit.edu	37	8	94793189	94793189	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:94793189C>T	uc011lgk.1	+	9	1028	c.957C>T	c.(955-957)TTC>TTT	p.F319F	TMEM67_uc010mat.1_Silent_p.F234F|TMEM67_uc010maw.2_Intron|TMEM67_uc003yga.3_Silent_p.F238F	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	319					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			CTACAAATTTCAGTTTTAAAG	0.328													7	66					0	0	1	0	0
ESRP1	54845	broad.mit.edu	37	8	95683691	95683691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:95683691G>A	uc003ygq.3	+	11	1427	c.1244G>A	c.(1243-1245)CGA>CAA	p.R415Q	ESRP1_uc003ygr.3_Missense_Mutation_p.R415Q|ESRP1_uc003ygs.3_Missense_Mutation_p.R415Q|ESRP1_uc003ygt.3_Missense_Mutation_p.R415Q|ESRP1_uc003ygu.3_Missense_Mutation_p.R415Q|ESRP1_uc003ygv.2_Missense_Mutation_p.R255Q|ESRP1_uc003ygw.2_Missense_Mutation_p.R255Q	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	415					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						GTGCTGAATCGATTCTCCTCG	0.403													16	243					0	0	1	0	0
MTDH	92140	broad.mit.edu	37	8	98718853	98718853	+	Splice_Site	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:98718853G>T	uc003yhz.2	+	8	1476	c.1148_splice	c.e8-1	p.N383_splice	MTDH_uc010mbf.2_Splice_Site	NM_178812	NP_848927	Q86UE4	LYRIC_HUMAN	metadherin						lipopolysaccharide-mediated signaling pathway|negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of angiogenesis|positive regulation of autophagy|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein kinase B signaling cascade	apical plasma membrane|endoplasmic reticulum membrane|integral to membrane|intercellular canaliculus|nuclear body|nuclear membrane|nucleolus|perinuclear region of cytoplasm|tight junction	NF-kappaB binding|RNA polymerase II transcription factor binding|transcription coactivator activity			liver(1)|central_nervous_system(1)	2	Breast(36;2.56e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.178)			TTAAATTTTAGATGGTCTGTC	0.373													4	48					0.150653	0.151501	1	1	0
OSR2	116039	broad.mit.edu	37	8	99961765	99961765	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:99961765G>A	uc003yir.2	+	2	1120	c.585G>A	c.(583-585)ACG>ACA	p.T195T	OSR2_uc010mbn.2_Silent_p.T195T|OSR2_uc003yiq.2_Silent_p.T195T|OSR2_uc011lgx.1_Silent_p.T316T	NM_001142462	NP_001135934	Q8N2R0	OSR2_HUMAN	odd-skipped related 2 isoform a	195					bone morphogenesis|chondrocyte differentiation|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic leg joint morphogenesis|embryonic skeletal joint morphogenesis|eyelid development in camera-type eye|head development|mesonephros development|metanephros development|middle ear morphogenesis|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|osteoblast proliferation|palate development|positive regulation of bone mineralization|positive regulation of epithelial cell proliferation|positive regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|zinc ion binding			central_nervous_system(1)	1	Breast(36;4.14e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.0136)			GGACCCACACGGACGAGAGGC	0.537													11	137					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100523341	100523341	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:100523341A>C	uc003yiv.2	+	29	4420	c.4309A>C	c.(4309-4311)AAA>CAA	p.K1437Q	VPS13B_uc003yiw.2_Missense_Mutation_p.K1412Q|VPS13B_uc003yix.1_Missense_Mutation_p.K907Q	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1437					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			GACAACTACAAAACTTCTAGA	0.333													3	28					0	0	1	0	0
SNX31	169166	broad.mit.edu	37	8	101648144	101648144	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:101648144C>T	uc003yjr.2	-	3	388	c.237G>A	c.(235-237)CTG>CTA	p.L79L		NM_152628	NP_689841	Q8N9S9	SNX31_HUMAN	sorting nexin 31	79	PX.				cell communication|protein transport		phosphatidylinositol binding				0	all_cancers(14;4.01e-05)|all_epithelial(15;1.26e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;1.21e-11)|all cancers(13;2.62e-09)|OV - Ovarian serous cystadenocarcinoma(57;3.22e-06)|STAD - Stomach adenocarcinoma(118;0.206)			AATATTGTTCCAGTTGGTCCC	0.323													7	29					0	0	1	0	0
ODF1	4956	broad.mit.edu	37	8	103572925	103572926	+	Missense_Mutation	DNP	CC	TT	TT	rs149163506		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:103572925_103572926CC>TT	uc003ykt.2	+	2	674_675	c.566_567CC>TT	c.(565-567)TCC>TTT	p.S189F		NM_024410	NP_077721	Q14990	ODFP1_HUMAN	outer dense fiber of sperm tails 1	189					cell differentiation|multicellular organismal development|spermatogenesis	outer dense fiber	structural molecule activity			ovary(2)	2	all_cancers(14;2.76e-05)|all_epithelial(15;4.54e-08)|Lung NSC(17;4.08e-05)|all_lung(17;9.15e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000125)|STAD - Stomach adenocarcinoma(118;0.0826)			GTAACATACTCCTATGGGCTCG	0.391													4	29					0	0	1	0	0
KLF10	7071	broad.mit.edu	37	8	103663505	103663505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:103663505G>A	uc011lhk.1	-	3	1209	c.1055C>T	c.(1054-1056)CCT>CTT	p.P352L	KLF10_uc011lhj.1_Missense_Mutation_p.P341L	NM_005655	NP_005646	Q13118	KLF10_HUMAN	Kruppel-like factor 10 isoform a	352					cell proliferation|cell-cell signaling|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|skeletal system development|transforming growth factor beta receptor signaling pathway	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_epithelial(15;5.63e-07)|Lung NSC(17;8.18e-05)|all_lung(17;0.000169)		OV - Ovarian serous cystadenocarcinoma(57;0.000112)|STAD - Stomach adenocarcinoma(118;0.0826)			TGCTGCTGAAGGGGAAAACCC	0.517													9	79					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106431444	106431444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:106431444G>A	uc003ymd.2	+	2	136	c.113G>A	c.(112-114)GGA>GAA	p.G38E		NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	38					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			ATCTCCAAAGGAGACTTTCCA	0.423													3	19					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110424606	110424606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:110424606G>A	uc003yne.2	+	20	2302	c.2198G>A	c.(2197-2199)CGA>CAA	p.R733Q		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	733	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CCAAACAGACGACCATATGGA	0.368										HNSCC(38;0.096)			3	13					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457158	110457158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:110457158C>T	uc003yne.2	+	38	5164	c.5060C>T	c.(5059-5061)TCT>TTT	p.S1687F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1687	IPT/TIG 9.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTTGCCGTTTCTTCTGCAGGT	0.438										HNSCC(38;0.096)			5	79					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457308	110457308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:110457308G>A	uc003yne.2	+	38	5314	c.5210G>A	c.(5209-5211)GGA>GAA	p.G1737E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1737	IPT/TIG 9.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CAGTGCCAGGGAAACTGCACC	0.433										HNSCC(38;0.096)			7	83					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110510693	110510693	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:110510693C>T	uc003yne.2	+	66	10706	c.10602C>T	c.(10600-10602)AGC>AGT	p.S3534S		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3534	Extracellular (Potential).|PbH1 9.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CCAAACAGAGCTCATTAATTG	0.294										HNSCC(38;0.096)			6	30					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110510796	110510796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:110510796C>T	uc003yne.2	+	66	10809	c.10705C>T	c.(10705-10707)CCA>TCA	p.P3569S		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3569	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TCCTAGATCTCCATCAGGTGA	0.353										HNSCC(38;0.096)			7	39					0	0	1	0	0
SYBU	55638	broad.mit.edu	37	8	110592132	110592132	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:110592132C>T	uc003ynj.3	-	5	793	c.630G>A	c.(628-630)AGG>AGA	p.R210R	SYBU_uc003yni.3_Silent_p.R207R|SYBU_uc003ynk.3_Silent_p.R91R|SYBU_uc010mco.2_Silent_p.R209R|SYBU_uc003ynl.3_Silent_p.R209R|SYBU_uc010mcp.2_Silent_p.R210R|SYBU_uc010mcq.2_Silent_p.R210R|SYBU_uc003yno.3_Silent_p.R91R|SYBU_uc010mcr.2_Silent_p.R210R|SYBU_uc003ynm.3_Silent_p.R209R|SYBU_uc003ynn.3_Silent_p.R209R|SYBU_uc010mcs.2_Silent_p.R91R|SYBU_uc010mct.2_Silent_p.R210R|SYBU_uc010mcu.2_Silent_p.R209R|SYBU_uc003ynp.3_Silent_p.R142R|SYBU_uc010mcv.2_Silent_p.R210R|SYBU_uc003ynh.3_Silent_p.R4R|SYBU_uc011lhw.1_Silent_p.R80R	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	210	Sufficient for interaction with KIF5B.|Ser-rich.					cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						TCAGCTGATTCCTGCACAGCA	0.557													8	111					0	0	1	0	0
SYBU	55638	broad.mit.edu	37	8	110655122	110655122	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:110655122G>A	uc003ynj.3	-	2	227	c.64C>T	c.(64-66)CGA>TGA	p.R22*	SYBU_uc003yni.3_Nonsense_Mutation_p.R19*|SYBU_uc003ynk.3_Intron|SYBU_uc010mco.2_Nonsense_Mutation_p.R21*|SYBU_uc003ynl.3_Nonsense_Mutation_p.R21*|SYBU_uc010mcp.2_Nonsense_Mutation_p.R22*|SYBU_uc010mcq.2_Nonsense_Mutation_p.R22*|SYBU_uc003yno.3_Intron|SYBU_uc010mcr.2_Nonsense_Mutation_p.R22*|SYBU_uc003ynm.3_Nonsense_Mutation_p.R21*|SYBU_uc003ynn.3_Nonsense_Mutation_p.R21*|SYBU_uc010mcs.2_Intron|SYBU_uc010mct.2_Nonsense_Mutation_p.R22*|SYBU_uc010mcu.2_Nonsense_Mutation_p.R21*|SYBU_uc003ynp.3_Intron|SYBU_uc010mcv.2_Nonsense_Mutation_p.R22*|uc003ynq.1_5'Flank	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	22	Sufficient for interaction with KIF5B.					cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						ATTCGGCTTCGAGAAATCTCC	0.483													7	82					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113504765	113504765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:113504765C>T	uc003ynu.2	-	31	5390	c.5231G>A	c.(5230-5232)GGA>GAA	p.G1744E	CSMD3_uc003yns.2_Missense_Mutation_p.G1016E|CSMD3_uc003ynt.2_Missense_Mutation_p.G1704E|CSMD3_uc011lhx.1_Missense_Mutation_p.G1640E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1744	Extracellular (Potential).|Sushi 9.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TCCATCATCTCCCATGATACA	0.368										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			4	39					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113662485	113662485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:113662485G>A	uc003ynu.2	-	19	3257	c.3098C>T	c.(3097-3099)TCA>TTA	p.S1033L	CSMD3_uc003yns.2_Missense_Mutation_p.S305L|CSMD3_uc003ynt.2_Missense_Mutation_p.S993L|CSMD3_uc011lhx.1_Missense_Mutation_p.S929L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1033	Extracellular (Potential).|Sushi 5.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ACAACTAAATGAAACAGTAGA	0.448										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			6	69					0	0	1	0	0
TNFRSF11B	4982	broad.mit.edu	37	8	119936933	119936933	+	Missense_Mutation	SNP	G	A	A	rs145316984		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:119936933G>A	uc003yon.3	-	5	1209	c.886C>T	c.(886-888)CGT>TGT	p.R296C		NM_002546	NP_002537	O00300	TR11B_HUMAN	osteoprotegerin precursor	296	Death 2.				apoptosis|skeletal system development		cytokine activity|receptor activity			central_nervous_system(2)	2	all_cancers(13;3.71e-26)|Lung NSC(37;1.69e-07)|Ovarian(258;0.018)|all_neural(195;0.0592)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00193)			ATCAAGCTACGAAGCTGCTCG	0.463													6	31					0	0	1	0	0
ZHX2	22882	broad.mit.edu	37	8	123964007	123964007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:123964007C>T	uc003ypk.1	+	3	824	c.257C>T	c.(256-258)TCC>TTC	p.S86F		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	86	C2H2-type 1.					cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			TGCCCCTACTCCACGCAAAAC	0.473													5	55					0	0	1	0	0
ZHX2	22882	broad.mit.edu	37	8	123965554	123965554	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:123965554C>T	uc003ypk.1	+	3	2371	c.1804C>T	c.(1804-1806)CAA>TAA	p.Q602*		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	602						cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			CAAAAAAGGCCAAGATGTGGG	0.562													5	47					0	0	1	0	0
KLHL38	340359	broad.mit.edu	37	8	124663868	124663868	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:124663868G>A	uc003yqs.1	-	1	1323	c.1299C>T	c.(1297-1299)CTC>CTT	p.L433L		NM_001081675	NP_001075144	Q2WGJ6	KLH38_HUMAN	kelch-like 38	433	Kelch 4.										0						CAAAGAGATAGAGTCTTTGGT	0.532													6	104					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125025752	125025752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:125025752G>A	uc003yqw.2	+	15	2109	c.1903G>A	c.(1903-1905)GAC>AAC	p.D635N	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	635	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AGTGCTCAGTGACTTCATCAG	0.463													4	8					0	0	1	0	0
KIAA0196	9897	broad.mit.edu	37	8	126056250	126056250	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:126056250G>A	uc003yrt.2	-	22	3083	c.2754C>T	c.(2752-2754)CCC>CCT	p.P918P	KIAA0196_uc011lir.1_Silent_p.P770P|KIAA0196_uc003yru.1_Silent_p.P492P	NM_014846	NP_055661	Q12768	STRUM_HUMAN	strumpellin	918					cell death	WASH complex				ovary(2)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			TACTTTTTAGGGGACTGACAG	0.378													4	10					0	0	1	0	0
NSMCE2	286053	broad.mit.edu	37	8	126379116	126379116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:126379116C>T	uc003yrw.2	+	8	961	c.733C>T	c.(733-735)CAT>TAT	p.H245Y		NM_173685	NP_775956	Q96MF7	NSE2_HUMAN	non-SMC element 2, MMS21 homolog	245					DNA recombination|DNA repair	nucleus	ligase activity|zinc ion binding			breast(1)	1	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)			AAGACATCGTCATTCCGAGTA	0.498													13	143					0	0	1	0	0
GSDMC	56169	broad.mit.edu	37	8	130788433	130788433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:130788433C>T	uc003ysr.2	-	3	1201	c.319G>A	c.(319-321)GGG>AGG	p.G107R		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	107						mitochondrion				ovary(2)|skin(1)	3						GAGGCCTCCCCTGACACACTC	0.478													4	70					0	0	1	0	0
ASAP1	50807	broad.mit.edu	37	8	131104327	131104327	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:131104327G>A	uc003yta.1	-	24	2492	c.2464C>T	c.(2464-2466)CTA>TTA	p.L822L	ASAP1_uc003ysz.1_Silent_p.L633L|ASAP1_uc011liw.1_Silent_p.L815L	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	822	Pro-rich.				cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						TTCTTGGATAGGGTGGAGCTG	0.572													10	99					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131922058	131922058	+	Silent	SNP	G	A	A	rs150100724		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:131922058G>A	uc003ytd.3	-	6	1792	c.1536C>T	c.(1534-1536)TCC>TCT	p.S512S	ADCY8_uc010mds.2_Silent_p.S512S	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	512	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GCACCGAGCCGGAGTGGATTC	0.473										HNSCC(32;0.087)			6	53					0	0	1	0	0
OC90	729330	broad.mit.edu	37	8	133036805	133036805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:133036805C>T	uc003ytg.2	-	13	1357	c.1357G>A	c.(1357-1359)GAG>AAG	p.E453K	OC90_uc011lix.1_Missense_Mutation_p.E453K	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	469					lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			CCGAGGTCCTCCTGTGGAGGG	0.622													4	24					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133142181	133142181	+	Silent	SNP	C	T	T	rs142082768	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:133142181C>T	uc003ytj.2	-	15	2172	c.1947G>A	c.(1945-1947)CGG>CGA	p.R649R	KCNQ3_uc010mdt.2_Silent_p.R637R	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	649					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			GCACCTGCAACCGTTCCATGT	0.498													10	70					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133153425	133153425	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:133153425G>A	uc003ytj.2	-	10	1641	c.1416C>T	c.(1414-1416)TTC>TTT	p.F472F	KCNQ3_uc010mdt.2_Silent_p.F472F	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	472					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			AGGCCGTGCGGAAACGCTCTT	0.453													12	105					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133920583	133920583	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:133920583C>T	uc003ytw.2	+	18	4041	c.4000C>T	c.(4000-4002)CAG>TAG	p.Q1334*	TG_uc010mdw.2_Nonsense_Mutation_p.Q93*	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1334					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CTGCCAGATCCAGGTACATGC	0.512													6	42					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133948005	133948005	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:133948005G>A	uc003ytw.2	+	25	4978	c.4937G>A	c.(4936-4938)CGA>CAA	p.R1646Q	TG_uc010mdw.2_Missense_Mutation_p.R405Q|TG_uc011ljb.1_Missense_Mutation_p.R79Q	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1646	Type IIIA.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CTCCAGAAACGAGATGCACTG	0.338													4	45					0	0	1	0	0
SLA	6503	broad.mit.edu	37	8	134063089	134063089	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:134063089G>A	uc003ytz.2	-	4	965	c.133C>T	c.(133-135)CGA>TGA	p.R45*	TG_uc003ytw.2_Intron|TG_uc010mdw.2_Intron|TG_uc011ljb.1_Intron|TG_uc011ljc.1_Intron|SLA_uc011lje.1_Nonsense_Mutation_p.R62*|SLA_uc011ljf.1_5'UTR|SLA_uc011ljg.1_Nonsense_Mutation_p.R62*|SLA_uc010mdy.1_Nonsense_Mutation_p.R45*|SLA_uc010mdz.1_Nonsense_Mutation_p.R45*|SLA_uc010mea.2_RNA|SLA_uc011ljd.1_Nonsense_Mutation_p.R85*	NM_001045556	NP_001039021	Q13239	SLAP1_HUMAN	Src-like-adaptor isoform a	45	SH3.					endosome	SH3/SH2 adaptor activity			lung(1)|liver(1)	2	all_epithelial(106;3.51e-21)|Lung NSC(106;4.24e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0279)|Breast(495;0.037)	BRCA - Breast invasive adenocarcinoma(115;0.000701)			TTCTCCCCTCGGCGGAATATC	0.507													10	52					0	0	1	0	0
WISP1	8840	broad.mit.edu	37	8	134233036	134233036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:134233036G>A	uc003yub.2	+	3	638	c.562G>A	c.(562-564)GAC>AAC	p.D188N	WISP1_uc003yuc.2_Intron|WISP1_uc010meb.2_Intron|WISP1_uc010mec.2_Intron|WISP1_uc010med.2_Intron|WISP1_uc003yud.2_Intron	NM_003882	NP_003873	O95388	WISP1_HUMAN	WNT1 inducible signaling pathway protein 1	188					cell adhesion|cell-cell signaling|regulation of cell growth|Wnt receptor signaling pathway	extracellular region|soluble fraction	insulin-like growth factor binding			central_nervous_system(1)|kidney(1)	2	all_epithelial(106;5.39e-23)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			ATGTGAGGACGACGCCAAGAG	0.682													8	43					0	0	1	0	0
NDRG1	10397	broad.mit.edu	37	8	134258871	134258871	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:134258871G>A	uc003yuh.2	-	13	1429	c.843C>T	c.(841-843)ACC>ACT	p.T281T	NDRG1_uc003yue.1_5'Flank|NDRG1_uc003yuf.1_Silent_p.T92T|NDRG1_uc003yug.2_Silent_p.T281T|NDRG1_uc010mee.2_Silent_p.T200T|NDRG1_uc010mef.2_Silent_p.T215T|NDRG1_uc011ljh.1_Silent_p.T109T|NDRG1_uc011lji.1_Silent_p.T28T	NM_001135242	NP_001128714	Q92597	NDRG1_HUMAN	N-myc downstream regulated 1	281					cellular response to hypoxia|response to metal ion	cytoplasm|microtubule cytoskeleton|nucleus|plasma membrane	protein binding			ovary(4)	4	all_epithelial(106;4.26e-24)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			TGAGGAGAGTGGTCTTTGTTG	0.438													25	131					0	0	1	0	0
ST3GAL1	6482	broad.mit.edu	37	8	134474168	134474168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:134474168G>A	uc003yuk.2	-	9	1628	c.799C>T	c.(799-801)CCA>TCA	p.P267S	ST3GAL1_uc003yum.2_Missense_Mutation_p.P267S	NM_173344	NP_775479	Q11201	SIA4A_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	267	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity				0	all_epithelial(106;1.53e-23)|Lung NSC(106;3.15e-07)|all_lung(105;1.26e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.00721)			CCGGTAGATGGGTATCGCCCG	0.582													9	109					0	0	1	0	0
ZFAT	57623	broad.mit.edu	37	8	135613905	135613905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:135613905G>A	uc003yup.2	-	6	2232	c.2057C>T	c.(2056-2058)CCT>CTT	p.P686L	ZFAT_uc003yun.2_Missense_Mutation_p.P674L|ZFAT_uc003yuo.2_Missense_Mutation_p.P674L|ZFAT_uc010meh.2_Missense_Mutation_p.P674L|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Missense_Mutation_p.P674L|ZFAT_uc010mej.2_Missense_Mutation_p.P624L|ZFAT_uc003yur.2_Missense_Mutation_p.P674L	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	686					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			AGCTACTGGAGGGAGGAGGTC	0.597													8	51					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139144923	139144923	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:139144923G>A	uc003yuy.2	-	20	4305	c.4134C>T	c.(4132-4134)ATC>ATT	p.I1378I	FAM135B_uc003yux.2_Silent_p.I1279I|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1378										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CGGCTCGGCCGATCAGGGTGT	0.537										HNSCC(54;0.14)			10	160					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139151308	139151308	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:139151308G>A	uc003yuy.2	-	18	3993	c.3822C>T	c.(3820-3822)TCC>TCT	p.S1274S	FAM135B_uc003yux.2_Silent_p.S1175S|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1274										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GTAGAGACCCGGATTTCTTCA	0.358										HNSCC(54;0.14)			6	64					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139163511	139163511	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:139163511C>T	uc003yuy.2	-	13	3378	c.3207G>A	c.(3205-3207)CAG>CAA	p.Q1069Q	FAM135B_uc003yux.2_Silent_p.Q970Q|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.Q631Q|FAM135B_uc003yvb.2_Silent_p.Q631Q	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1069										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			ATCCCAAAGGCTGATGGGTGA	0.527										HNSCC(54;0.14)			5	34					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139164719	139164719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:139164719C>T	uc003yuy.2	-	13	2170	c.1999G>A	c.(1999-2001)GAG>AAG	p.E667K	FAM135B_uc003yux.2_Missense_Mutation_p.E568K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E229K|FAM135B_uc003yvb.2_Missense_Mutation_p.E229K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	667										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GAGAGTTCCTCCTGCTCTTCT	0.517										HNSCC(54;0.14)			5	60					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139164748	139164748	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:139164748G>A	uc003yuy.2	-	13	2141	c.1970C>T	c.(1969-1971)TCC>TTC	p.S657F	FAM135B_uc003yux.2_Missense_Mutation_p.S558F|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.S219F|FAM135B_uc003yvb.2_Missense_Mutation_p.S219F	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	657										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GTCCTTTAGGGAAGACCTAAT	0.493										HNSCC(54;0.14)			9	59					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139207533	139207533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:139207533C>T	uc003yuy.2	-	9	1012	c.841G>A	c.(841-843)GAA>AAA	p.E281K	FAM135B_uc003yux.2_Missense_Mutation_p.E182K|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	281										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GAAAGTGTTTCTTCAACAGCA	0.408										HNSCC(54;0.14)			6	79					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139611123	139611123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:139611123C>T	uc003yvd.2	-	61	4651	c.4204G>A	c.(4204-4206)GGT>AGT	p.G1402S	COL22A1_uc011ljo.1_Missense_Mutation_p.G682S	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1402	Pro-rich.|Gly-rich.|Collagen-like 14.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCTTTGTCACCTTTGATCCCA	0.577										HNSCC(7;0.00092)			7	38					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139638484	139638484	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:139638484C>T	uc003yvd.2	-	51	4113	c.3666G>A	c.(3664-3666)GGG>GGA	p.G1222G	COL22A1_uc011ljo.1_Silent_p.G502G	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1222	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GGCCTTCTTTCCCCTAAAAGA	0.443										HNSCC(7;0.00092)			5	22					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139793202	139793202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:139793202G>A	uc003yvd.2	-	13	2065	c.1618C>T	c.(1618-1620)CCC>TCC	p.P540S		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	540	Pro-rich.|Gly-rich.|Collagen-like 2.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CTCCCAGGGGGGCCGGGCAGG	0.532										HNSCC(7;0.00092)			9	113					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139809070	139809070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:139809070C>T	uc003yvd.2	-	12	2035	c.1588G>A	c.(1588-1590)GGT>AGT	p.G530S		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	530	Pro-rich.|Gly-rich.|Collagen-like 2.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			ACCTTTTCACCCTTTTCCCCT	0.463										HNSCC(7;0.00092)			9	204					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139890033	139890033	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:139890033G>A	uc003yvd.2	-	3	1065	c.618C>T	c.(616-618)ATC>ATT	p.I206I		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	206	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GGATCTTGTCGATGGCATTGA	0.662										HNSCC(7;0.00092)			11	43					0	0	1	0	0
TRAPPC9	83696	broad.mit.edu	37	8	140922528	140922528	+	Missense_Mutation	SNP	C	T	T	rs144046998		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:140922528C>T	uc003yvj.2	-	20	2961	c.2827G>A	c.(2827-2829)GAC>AAC	p.D943N	TRAPPC9_uc003yvh.2_Missense_Mutation_p.D1041N|TRAPPC9_uc010mel.1_Missense_Mutation_p.D364N|TRAPPC9_uc003yvi.1_Missense_Mutation_p.D934N	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	943					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						TTGAACTTGTCCACTTGAATA	0.537													10	40					0	0	1	0	0
EIF2C2	27161	broad.mit.edu	37	8	141554381	141554382	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:141554381_141554382GG>AA	uc003yvn.2	-	14	1809_1810	c.1769_1770CC>TT	c.(1768-1770)CCC>CTT	p.P590L	EIF2C2_uc010men.2_Missense_Mutation_p.P513L|EIF2C2_uc010meo.2_Missense_Mutation_p.P590L	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	590	Piwi.				mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			GAAAGATGACGGGCTGCTGGAA	0.649													8	132					0	0	1	0	0
DENND3	22898	broad.mit.edu	37	8	142161840	142161840	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:142161840C>T	uc003yvy.2	+	7	1016	c.738C>T	c.(736-738)TTC>TTT	p.F246F	DENND3_uc010mep.2_Silent_p.F259F	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	246	DENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			AGCACCCCTTCGTGCCCATCC	0.582													22	101					0	0	1	0	0
DENND3	22898	broad.mit.edu	37	8	142176316	142176316	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:142176316G>A	uc003yvy.2	+	12	1619	c.1341G>A	c.(1339-1341)AGG>AGA	p.R447R	DENND3_uc010mep.2_Silent_p.R408R|DENND3_uc003yvz.1_Silent_p.R131R	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	447										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			TAAGTCCAAGGAGACCGACCG	0.478													17	169					0	0	1	0	0
DENND3	22898	broad.mit.edu	37	8	142178165	142178165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:142178165G>A	uc003yvy.2	+	13	1854	c.1576G>A	c.(1576-1578)GAG>AAG	p.E526K	DENND3_uc010mep.2_Missense_Mutation_p.E487K|DENND3_uc003yvz.1_Missense_Mutation_p.E210K	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	526										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			CTTTCCGCTGGAGAGCAAGTG	0.532													6	107					0	0	1	0	0
DENND3	22898	broad.mit.edu	37	8	142200475	142200475	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:142200475G>A	uc003yvy.2	+	20	3376	c.3098G>A	c.(3097-3099)GGC>GAC	p.G1033D	DENND3_uc010mep.2_Missense_Mutation_p.G994D|DENND3_uc003ywa.1_Missense_Mutation_p.G83D|DENND3_uc003ywb.2_Missense_Mutation_p.G83D	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	1033										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			CCGCGAGGTGGCCTGACGTCC	0.647													14	43					0	0	1	0	0
GPR20	2843	broad.mit.edu	37	8	142367603	142367603	+	Missense_Mutation	SNP	G	A	A	rs150581192		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:142367603G>A	uc003ywf.2	-	2	510	c.421C>T	c.(421-423)CTC>TTC	p.L141F		NM_005293	NP_005284	Q99678	GPR20_HUMAN	G protein-coupled receptor 20	141	Helical; Name=3; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(97;4.32e-16)|all_epithelial(106;6.61e-14)|Lung NSC(106;9.4e-06)|all_lung(105;1.35e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0415)			ATGCAGGTGAGGAAGAGGATG	0.677													4	30					0	0	1	0	0
FLJ43860	389690	broad.mit.edu	37	8	142487558	142487558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:142487558C>T	uc003ywi.2	-	12	1471	c.1390G>A	c.(1390-1392)GAC>AAC	p.D464N	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	464							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CACAGAGTGTCCTGGGGCTCC	0.672													7	57					0	0	1	0	0
CYP11B1	1584	broad.mit.edu	37	8	143956537	143956537	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:143956537G>A	uc003yxi.2	-	8	1241	c.1234C>T	c.(1234-1236)CGC>TGC	p.R412C	CYP11B1_uc010mex.2_Missense_Mutation_p.R111C|CYP11B1_uc003yxh.2_Intron|CYP11B1_uc003yxj.2_Intron|CYP11B1_uc010mey.2_Missense_Mutation_p.R483C	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	412					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	GCGGGGTTGCGACCCAGAGAG	0.627									Familial_Hyperaldosteronism_type_I				7	86					0	0	1	0	0
CYP11B2	1585	broad.mit.edu	37	8	143999137	143999137	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:143999137G>A	uc003yxk.1	-	1	123	c.120C>T	c.(118-120)GCC>GCT	p.A40A		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	40					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	GCTGGGGCATGGCTTCAAACG	0.652									Familial_Hyperaldosteronism_type_I				16	79					0	0	1	0	0
TOP1MT	116447	broad.mit.edu	37	8	144398199	144398199	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144398199G>A	uc003yxz.2	-	11	1447	c.1428C>T	c.(1426-1428)TTC>TTT	p.F476F	TOP1MT_uc011lkd.1_Silent_p.F378F|TOP1MT_uc011lke.1_Silent_p.F378F|TOP1MT_uc010mfb.2_Silent_p.F378F|TOP1MT_uc011lkf.1_Silent_p.F271F	NM_052963	NP_443195	Q969P6	TOP1M_HUMAN	mitochondrial topoisomerase I precursor	476					DNA topological change	chromosome|mitochondrial nucleoid	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)		Irinotecan(DB00762)|Topotecan(DB01030)	TCGACTTCTCGAACGTACTGG	0.607													20	87					0	0	1	0	0
TOP1MT	116447	broad.mit.edu	37	8	144406178	144406178	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144406178G>A	uc003yxz.2	-	7	970	c.951C>T	c.(949-951)TTC>TTT	p.F317F	TOP1MT_uc011lkd.1_Silent_p.F219F|TOP1MT_uc011lke.1_Silent_p.F219F|TOP1MT_uc010mfb.2_Silent_p.F219F|TOP1MT_uc011lkf.1_Silent_p.F112F|TOP1MT_uc010mfd.1_Silent_p.F112F	NM_052963	NP_443195	Q969P6	TOP1M_HUMAN	mitochondrial topoisomerase I precursor	317					DNA topological change	chromosome|mitochondrial nucleoid	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)		Irinotecan(DB00762)|Topotecan(DB01030)	CCTTATCGATGAAATACAGGG	0.612													6	85					0	0	1	0	0
MAFA	389692	broad.mit.edu	37	8	144511634	144511634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144511634C>T	uc003yyc.1	-	1	943	c.943G>A	c.(943-945)GAG>AAG	p.E315K		NM_201589	NP_963883	Q8NHW3	MAFA_HUMAN	v-maf musculoaponeurotic fibrosarcoma oncogene	315					insulin secretion|nitric oxide mediated signal transduction|response to glucose stimulus	nucleus	protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(97;7.39e-11)|all_epithelial(106;5.44e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.237)			gccAGCTTCTCGTATTTCTCC	0.532										HNSCC(29;0.082)			6	33					0	0	1	0	0
GSDMD	79792	broad.mit.edu	37	8	144641705	144641705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144641705C>T	uc010mfe.2	+	5	903	c.200C>T	c.(199-201)CCG>CTG	p.P67L	uc003yye.2_5'Flank|GSDMD_uc003yyf.2_Missense_Mutation_p.P115L|GSDMD_uc003yyi.2_Missense_Mutation_p.P67L|GSDMD_uc003yyg.2_Missense_Mutation_p.P67L|GSDMD_uc003yyh.2_Intron	NM_024736	NP_079012	P57764	GSDMD_HUMAN	gasdermin D	67											0						ATCCTGGAGCCGGATGCCGCG	0.607													15	91					0	0	1	0	0
NAPRT1	93100	broad.mit.edu	37	8	144657673	144657673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144657673G>A	uc003yym.3	-	10	1236	c.1211C>T	c.(1210-1212)CCA>CTA	p.P404L	C8orf73_uc010mff.2_5'Flank|C8orf73_uc010mfg.1_5'Flank|NAPRT1_uc003yyn.3_Missense_Mutation_p.P404L|NAPRT1_uc011lkh.1_Missense_Mutation_p.P404L|NAPRT1_uc003yyo.3_Missense_Mutation_p.P404L	NM_145201	NP_660202	Q6XQN6	PNCB_HUMAN	nicotinate phosphoribosyltransferase domain	404					nicotinamide metabolic process|nicotinate nucleotide salvage|response to oxidative stress|water-soluble vitamin metabolic process	cytosol|Golgi apparatus|nucleus	nicotinate phosphoribosyltransferase activity|nicotinate-nucleotide diphosphorylase (carboxylating) activity			ovary(1)	1	all_cancers(97;6.49e-11)|all_epithelial(106;4.73e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.014)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CTTCATTCGTGGCTGGCCCCC	0.677													6	36					0	0	1	0	0
NAPRT1	93100	broad.mit.edu	37	8	144659271	144659271	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144659271G>A	uc003yym.3	-	5	670	c.645C>T	c.(643-645)TTC>TTT	p.F215F	NAPRT1_uc003yyn.3_Silent_p.F215F|NAPRT1_uc011lkh.1_Silent_p.F215F|NAPRT1_uc003yyo.3_Silent_p.F215F	NM_145201	NP_660202	Q6XQN6	PNCB_HUMAN	nicotinate phosphoribosyltransferase domain	215					nicotinamide metabolic process|nicotinate nucleotide salvage|response to oxidative stress|water-soluble vitamin metabolic process	cytosol|Golgi apparatus|nucleus	nicotinate phosphoribosyltransferase activity|nicotinate-nucleotide diphosphorylase (carboxylating) activity			ovary(1)	1	all_cancers(97;6.49e-11)|all_epithelial(106;4.73e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.014)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.146)			AGGAAGTGACGAAGGAGTGGG	0.672													4	43					0	0	1	0	0
ZNF623	9831	broad.mit.edu	37	8	144732449	144732449	+	Missense_Mutation	SNP	C	T	T	rs138574970		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144732449C>T	uc003yzd.2	+	1	496	c.407C>T	c.(406-408)TCG>TTG	p.S136L	ZNF623_uc011lkp.1_Missense_Mutation_p.S96L|ZNF623_uc003yzc.2_Missense_Mutation_p.S96L	NM_014789	NP_055604	O75123	ZN623_HUMAN	zinc finger protein 623 isoform 1	136	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;5.28e-40)|all cancers(56;5.23e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			ACGTTTAATTCGGACCTAGTT	0.478													6	86					0	0	1	0	0
MAPK15	225689	broad.mit.edu	37	8	144803199	144803199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144803199G>A	uc003yzj.2	+	10	988	c.947G>A	c.(946-948)CGA>CAA	p.R316Q		NM_139021	NP_620590	Q8TD08	MK15_HUMAN	mitogen-activated protein kinase 15	316					protein autophosphorylation	extracellular region	ATP binding|MAP kinase activity|SH3 domain binding			lung(2)	2	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GAGTGGGCACGAGAGGCAGAT	0.697													4	18					0	0	1	0	0
SCRIB	23513	broad.mit.edu	37	8	144893205	144893205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144893205G>A	uc003yzp.1	-	11	1151	c.1144C>T	c.(1144-1146)CTC>TTC	p.L382F	SCRIB_uc003yzo.1_Missense_Mutation_p.L382F	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	382	Sufficient for targeting to adherens junction and to inhibit cell proliferation.|LRR 16.				activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			AGGGCCTTGAGATTGAGGTGG	0.677													4	16					0	0	1	0	0
PUF60	22827	broad.mit.edu	37	8	144898752	144898752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144898752G>A	uc003yzs.2	-	12	1682	c.1618C>T	c.(1618-1620)CGC>TGC	p.R540C	SCRIB_uc003yzo.1_5'Flank|SCRIB_uc003yzp.1_5'Flank|PUF60_uc003yzr.2_Missense_Mutation_p.R480C|PUF60_uc003yzt.2_Missense_Mutation_p.R523C|PUF60_uc003yzq.2_Missense_Mutation_p.R497C	NM_078480	NP_510965	Q9UHX1	PUF60_HUMAN	poly-U binding splicing factor 60KDa isoform a	540	RRM 3; atypical.|Inhibits transcriptional repression, interaction with ERCC3 and apoptosis induction.				apoptosis|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nucleus|ribonucleoprotein complex	DNA binding|nucleotide binding|protein binding|RNA binding				0	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;6.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			ACCACCTTGCGGCCAGCAAAC	0.532													7	145					0	0	1	0	0
NRBP2	340371	broad.mit.edu	37	8	144919435	144919435	+	Silent	SNP	G	A	A	rs138709296		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144919435G>A	uc011lkt.1	-	13	1253	c.1113C>T	c.(1111-1113)TTC>TTT	p.F371F	NRBP2_uc003yzv.2_Silent_p.F128F|NRBP2_uc003yzz.1_5'Flank|NRBP2_uc003yzw.2_Silent_p.F163F|NRBP2_uc010mfl.2_Silent_p.F163F|NRBP2_uc010mfm.2_Silent_p.F128F|NRBP2_uc011lks.1_Silent_p.F128F|NRBP2_uc003yzy.2_Silent_p.F128F	NM_178564	NP_848659	Q9NSY0	NRBP2_HUMAN	nuclear receptor binding protein 2	371					negative regulation of neuron apoptosis|neuron differentiation	cytoplasm	ATP binding|protein kinase activity			central_nervous_system(2)	2	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;6.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			CATCCTCCAGGAATTTGTCCA	0.522													9	32					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144940432	144940432	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144940432G>A	uc003zaa.1	-	2	15013	c.15000C>T	c.(14998-15000)ATC>ATT	p.I5000I		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	5000	Plectin 63.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCTCCCGGACGATGAGGTCCT	0.697													10	305					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144940456	144940456	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144940456G>A	uc003zaa.1	-	2	14989	c.14976C>T	c.(14974-14976)TTC>TTT	p.F4992F		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4992	Plectin 63.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCATGGCCTGGAAGAGGGAGA	0.701													8	267					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144942907	144942907	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144942907G>A	uc003zaa.1	-	1	4528	c.4515C>T	c.(4513-4515)GTC>GTT	p.V1505V		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1505						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCAGGGTGGTGACTGCGCTGA	0.677													3	6					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144945117	144945117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144945117C>T	uc003zaa.1	-	1	2318	c.2305G>A	c.(2305-2307)GAC>AAC	p.D769N		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	769	Plectin 15.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GTGTTGGGGTCGAAGAAGCCC	0.627													12	115					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	144991293	144991293	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144991293G>A	uc003zaf.1	-	32	13277	c.13107C>T	c.(13105-13107)TTC>TTT	p.F4369F	PLEC_uc003zab.1_Silent_p.F4232F|PLEC_uc003zac.1_Silent_p.F4236F|PLEC_uc003zad.2_Silent_p.F4232F|PLEC_uc003zae.1_Silent_p.F4200F|PLEC_uc003zag.1_Silent_p.F4210F|PLEC_uc003zah.2_Silent_p.F4218F|PLEC_uc003zaj.2_Silent_p.F4259F	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	4369	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GCATGTCGGCGAACTCGGTGA	0.667													11	54					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	144991585	144991585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:144991585G>A	uc003zaf.1	-	32	12985	c.12815C>T	c.(12814-12816)TCC>TTC	p.S4272F	PLEC_uc003zab.1_Missense_Mutation_p.S4135F|PLEC_uc003zac.1_Missense_Mutation_p.S4139F|PLEC_uc003zad.2_Missense_Mutation_p.S4135F|PLEC_uc003zae.1_Missense_Mutation_p.S4103F|PLEC_uc003zag.1_Missense_Mutation_p.S4113F|PLEC_uc003zah.2_Missense_Mutation_p.S4121F|PLEC_uc003zaj.2_Missense_Mutation_p.S4162F	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	4272	Binding to intermediate filaments (By similarity).|Globular 2.|Plectin 27.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CTTGCGCACGGAGGACTTGGA	0.617													5	45					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	145005749	145005749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:145005749G>A	uc003zaf.1	-	19	2838	c.2668C>T	c.(2668-2670)CGC>TGC	p.R890C	PLEC_uc003zab.1_Missense_Mutation_p.R753C|PLEC_uc003zac.1_Missense_Mutation_p.R757C|PLEC_uc003zad.2_Missense_Mutation_p.R753C|PLEC_uc003zae.1_Missense_Mutation_p.R721C|PLEC_uc003zag.1_Missense_Mutation_p.R731C|PLEC_uc003zah.2_Missense_Mutation_p.R739C|PLEC_uc003zaj.2_Missense_Mutation_p.R780C	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	890	Spectrin 3.|Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GTGGCGGAGCGATCACAACTG	0.662													4	12					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	145012849	145012849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:145012849G>A	uc003zaf.1	-	2	705	c.535C>T	c.(535-537)CGT>TGT	p.R179C	PLEC_uc003zab.1_Missense_Mutation_p.R42C|PLEC_uc003zac.1_Missense_Mutation_p.R46C|PLEC_uc003zad.2_Missense_Mutation_p.R42C|PLEC_uc003zae.1_Missense_Mutation_p.R10C|PLEC_uc003zag.1_Missense_Mutation_p.R20C|PLEC_uc003zah.2_Missense_Mutation_p.R28C|PLEC_uc003zaj.2_Missense_Mutation_p.R69C	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	179	CH 1.|Globular 1.|Actin-binding.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						TTCTGCACACGATCCCGCTCA	0.627													5	51					0	0	1	0	0
SPATC1	375686	broad.mit.edu	37	8	145095065	145095065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:145095065C>T	uc011lkw.1	+	2	569	c.467C>T	c.(466-468)TCC>TTC	p.S156F	SPATC1_uc011lkx.1_Missense_Mutation_p.S156F	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	156										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CTGGCCAGTTCCCTGGGCCTG	0.672													4	3					0	0	1	0	0
OPLAH	26873	broad.mit.edu	37	8	145113014	145113014	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:145113014G>A	uc003zar.3	-	8	1069	c.987C>T	c.(985-987)TTC>TTT	p.F329F	OPLAH_uc003zas.1_5'Flank|OPLAH_uc003zat.1_Silent_p.F107F	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	329							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	AGACGTGCTCGAATTCCCCAG	0.667													9	108					0	0	1	0	0
HSF1	3297	broad.mit.edu	37	8	145532615	145532615	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:145532615C>T	uc003zbt.3	+	2	311	c.141C>T	c.(139-141)TTC>TTT	p.F47F	HSF1_uc003zbu.3_RNA	NM_005526	NP_005517	Q00613	HSF1_HUMAN	heat shock transcription factor 1	47	By similarity.					cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;1.12e-39)|all cancers(56;9.11e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0547)|Colorectal(110;0.055)			TCCACGTGTTCGACCAGGGCC	0.627													5	97					0	0	1	0	0
KIFC2	90990	broad.mit.edu	37	8	145695010	145695010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:145695010C>T	uc003zcz.2	+	12	1425	c.1360C>T	c.(1360-1362)CCA>TCA	p.P454S	KIFC2_uc003zda.2_5'Flank	NM_145754	NP_665697	Q96AC6	KIFC2_HUMAN	kinesin family member C2	454	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GGTCTTCCCTCCAGACGCCAG	0.617													13	68					0	0	1	0	0
ZNF251	90987	broad.mit.edu	37	8	145947691	145947691	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:145947691G>A	uc003zdv.3	-	5	1610	c.1354C>T	c.(1354-1356)CGA>TGA	p.R452*		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	452	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		TGAACTCTTCGATGCTGAACA	0.498													5	59					0	0	1	0	0
ZNF16	7564	broad.mit.edu	37	8	146157162	146157162	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr8:146157162G>A	uc003zet.2	-	4	1198	c.1011C>T	c.(1009-1011)ATC>ATT	p.I337I	ZNF16_uc003zeu.2_Silent_p.I337I	NM_001029976	NP_001025147	P17020	ZNF16_HUMAN	zinc finger protein 16	337	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5	all_cancers(97;8.72e-12)|all_epithelial(106;1.07e-10)|Lung NSC(106;7.18e-05)|all_lung(105;0.00021)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.136)	Epithelial(56;3.45e-38)|all cancers(56;3.04e-33)|BRCA - Breast invasive adenocarcinoma(115;0.0424)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.02)|KIRC - Kidney renal clear cell carcinoma(644;0.0486)		TTTGATGTTGGATGAGGTTTG	0.478													6	37					0	0	1	0	0
FOXD4	2298	broad.mit.edu	37	9	117808	117808	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:117808C>T	uc003zfz.2	-	1	610	c.312G>A	c.(310-312)AAG>AAA	p.K104K		NM_207305	NP_997188	Q12950	FOXD4_HUMAN	forkhead box D4	104	Fork-head.				axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_lung(41;0.218)	all_cancers(5;0.0395)|Acute lymphoblastic leukemia(5;1.91e-07)|all_hematologic(5;1.95e-06)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		AGGAGGGGGGCTTTGCCGGCT	0.672													32	155					0	0	1	0	0
DMRT2	10655	broad.mit.edu	37	9	1056845	1056845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:1056845C>T	uc003zha.2	+	4	1458	c.1258C>T	c.(1258-1260)CAT>TAT	p.H420Y	DMRT2_uc003zgx.3_Missense_Mutation_p.H187Y|DMRT2_uc010mgz.2_Missense_Mutation_p.H187Y|DMRT2_uc003zgy.3_Missense_Mutation_p.H264Y|DMRT2_uc003zhb.3_3'UTR|DMRT2_uc011llt.1_3'UTR|DMRT2_uc011llu.1_3'UTR|DMRT2_uc011llv.1_Missense_Mutation_p.H420Y	NM_181872	NP_870987	Q9Y5R5	DMRT2_HUMAN	doublesex and mab-3 related transcription factor	420					male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0		all_lung(10;1.49e-09)|Lung NSC(10;1.86e-09)		Lung(218;0.0195)|GBM - Glioblastoma multiforme(50;0.0388)		CCTTCAGGGTCATCAGGCTGT	0.562													8	70					0	0	1	0	0
SMARCA2	6595	broad.mit.edu	37	9	2123808	2123808	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:2123808C>T	uc003zhc.2	+	27	3951	c.3852C>T	c.(3850-3852)ATC>ATT	p.I1284I	SMARCA2_uc003zhd.2_Silent_p.I1284I|SMARCA2_uc010mha.2_Silent_p.I1217I	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	1284					chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		CCTCCTGGATCATTAAGGATG	0.567													4	20					0	0	1	0	0
GLIS3	169792	broad.mit.edu	37	9	4118550	4118550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:4118550C>T	uc003zhw.1	-	3	657	c.463G>A	c.(463-465)GAT>AAT	p.D155N	GLIS3_uc003zhx.1_Missense_Mutation_p.D310N|GLIS3_uc003zic.1_Missense_Mutation_p.D310N|GLIS3_uc003zie.1_Missense_Mutation_p.D310N|GLIS3_uc010mhh.1_Missense_Mutation_p.D185N|GLIS3_uc003zid.1_Missense_Mutation_p.D88N|GLIS3_uc010mhi.1_Missense_Mutation_p.D117N|GLIS3_uc003zif.1_Missense_Mutation_p.D88N|GLIS3_uc003zig.1_Missense_Mutation_p.D154N|GLIS3_uc003zih.1_Missense_Mutation_p.D88N|GLIS3_uc003zhy.1_Missense_Mutation_p.D88N|GLIS3_uc003zhz.1_Missense_Mutation_p.D88N|GLIS3_uc003zib.1_Missense_Mutation_p.D154N|GLIS3_uc010mhg.1_Missense_Mutation_p.D88N	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	155					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		CCGATGCCATCGGACAGCGGG	0.612													5	86					0	0	1	0	0
JAK2	3717	broad.mit.edu	37	9	5080251	5080251	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:5080251G>T	uc010mhm.2	+	16	2267	c.2154G>T	c.(2152-2154)TGG>TGT	p.W718C	JAK2_uc003ziw.2_Missense_Mutation_p.W718C	NM_004972	NP_004963	O60674	JAK2_HUMAN	Janus kinase 2	718	Protein kinase 1.				actin filament polymerization|activation of caspase activity by protein phosphorylation|activation of JAK2 kinase activity|blood coagulation|cellular component movement|erythrocyte differentiation|interferon-gamma-mediated signaling pathway|interleukin-12-mediated signaling pathway|JAK-STAT cascade involved in growth hormone signaling pathway|mammary gland epithelium development|mesoderm development|negative regulation of cell proliferation|negative regulation of DNA binding|positive regulation of apoptosis|positive regulation of cell-substrate adhesion|positive regulation of growth hormone receptor signaling pathway|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|protein autophosphorylation|regulation of inflammatory response|regulation of interferon-gamma-mediated signaling pathway|response to antibiotic|response to lipopolysaccharide|STAT protein import into nucleus|tumor necrosis factor-mediated signaling pathway|tyrosine phosphorylation of STAT protein	caveola|cytoskeleton|cytosol|endomembrane system|nucleus	ATP binding|growth hormone receptor binding|heme binding|histone binding|histone kinase activity (H3-Y41 specific)|interleukin-12 receptor binding|non-membrane spanning protein tyrosine kinase activity|protein kinase binding|SH2 domain binding		PCM1/JAK2(30)|PAX5/JAK2(18)|ETV6/JAK2(11)|BCR/JAK2(6)|SSBP2/JAK2(4)|SEC31A/JAK2(4)	haematopoietic_and_lymphoid_tissue(28629)|lung(5)|breast(5)|ovary(1)|liver(1)	28641	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0198)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0237)|Lung(218;0.133)		GAATACCATGGGTACCACCTG	0.338		1	T|Mis|O	ETV6|PCM1|BCR	ALL|AML|MPD| CML				Polycythemia_Vera_Familial				5	126					1	1	1	1	0
C9orf123	90871	broad.mit.edu	37	9	7798529	7798529	+	Silent	SNP	G	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:7798529G>T	uc003zki.2	-	2	341	c.297C>A	c.(295-297)CCC>CCA	p.P99P	C9orf123_uc003zkj.2_3'UTR			Q96GE9	CI123_HUMAN	Homo sapiens cDNA FLJ46908 fis, clone FEBRA2004867.	28						integral to membrane					0		all_cancers(3;0.0539)|Lung NSC(3;3.36e-05)|all_lung(3;0.000156)|all_epithelial(3;0.0356)		GBM - Glioblastoma multiforme(50;0.0561)		TGTGTGTCACGGGGAAAGGGA	0.488													3	36					1	1	1	1	0
ADAMTSL1	92949	broad.mit.edu	37	9	18504889	18504889	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:18504889G>A	uc003zne.3	+	2	253	c.126G>A	c.(124-126)TGG>TGA	p.W42*	ADAMTSL1_uc003znb.2_Nonsense_Mutation_p.W42*|ADAMTSL1_uc003znc.3_Nonsense_Mutation_p.W42*	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	42	TSP type-1 1.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		GGGGCCCATGGAGTGAATGCT	0.607													6	68					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18681838	18681838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:18681838G>A	uc003zne.3	+	12	1497	c.1370G>A	c.(1369-1371)AGA>AAA	p.R457K	ADAMTSL1_uc003znc.3_Missense_Mutation_p.R457K	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	457	TSP type-1 3.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		CAGGGCCTCAGATACCGTGTG	0.502													7	101					0	0	1	0	0
KIAA1797	54914	broad.mit.edu	37	9	20789480	20789480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:20789480C>T	uc003zog.1	+	13	1691	c.1328C>T	c.(1327-1329)CCT>CTT	p.P443L		NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	443	Helical; (Potential).					integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		TCATTGCTTCCTATTACTGCT	0.448													3	18					0	0	1	0	0
IFNA14	3448	broad.mit.edu	37	9	21239849	21239849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:21239849G>A	uc010mis.2	-	1	130	c.86C>T	c.(85-87)ACC>ATC	p.T29I	IFNA14_uc003zoo.1_RNA	NM_002172	NP_002163	P01570	IFN14_HUMAN	interferon, alpha 14 precursor	29					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		CAGGCTGTGGGTTTGAGACAG	0.493													4	15					0	0	1	0	0
IFNE	338376	broad.mit.edu	37	9	21481691	21481691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:21481691C>T	uc003zpg.2	-	1	622	c.3G>A	c.(1-3)ATG>ATA	p.M1I	LOC554202_uc003zpe.2_Intron|LOC554202_uc003zpf.2_Intron	NM_176891	NP_795372	Q86WN2	IFNE_HUMAN	interferon, epsilon precursor	1					defense response|response to virus	extracellular space	cytokine activity|cytokine receptor binding				0						GCTTGATAATCATGGTGAAGG	0.403													4	21					0	0	1	0	0
MTAP	4507	broad.mit.edu	37	9	21816760	21816760	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:21816760C>T	uc003zph.2	+	3	281	c.168C>T	c.(166-168)GTC>GTT	p.V56V	MTAP_uc003zpi.1_Silent_p.V56V|MTAP_uc010mit.2_RNA|MTAP_uc011lnk.1_Silent_p.V73V|MTAP_uc011lnl.1_5'Flank	NM_002451	NP_002442	Q13126	MTAP_HUMAN	5'-methylthioadenosine phosphorylase	56					nucleoside metabolic process	cytoplasm	phosphorylase activity|S-methyl-5-thioadenosine phosphorylase activity			central_nervous_system(1)	1		all_cancers(5;0)|Hepatocellular(5;0.00162)|Colorectal(97;0.173)		GBM - Glioblastoma multiforme(3;0)|Lung(24;2.24e-57)|LUSC - Lung squamous cell carcinoma(38;1.97e-36)|STAD - Stomach adenocarcinoma(4;3.26e-05)|OV - Ovarian serous cystadenocarcinoma(39;0.00931)|COAD - Colon adenocarcinoma(8;0.15)	Adenine(DB00173)	TTGATTGCGTCCTCCTTGCAA	0.318													15	86					0	0	1	0	0
IFT74	80173	broad.mit.edu	37	9	26978217	26978217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:26978217C>T	uc010mja.2	+	3	339	c.212C>T	c.(211-213)CCT>CTT	p.P71L	IFT74_uc010mjb.2_Missense_Mutation_p.P71L|IFT74_uc003zqf.3_Missense_Mutation_p.P71L|IFT74_uc003zqg.3_Missense_Mutation_p.P71L	NM_001099223	NP_001092693	Q96LB3	IFT74_HUMAN	coiled-coil domain containing 2 isoform a	71						cytoplasmic membrane-bounded vesicle|intraflagellar transport particle B|microtubule-based flagellum				skin(1)	1		all_neural(11;2.36e-10)		Lung(218;1.4e-05)|LUSC - Lung squamous cell carcinoma(38;0.000114)		GCCCATCGCCCTGTAACACAA	0.438													3	15					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27157868	27157868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:27157868C>T	uc003zqi.3	+	2	534	c.92C>T	c.(91-93)TCC>TTC	p.S31F	TEK_uc010mjc.1_Intron|TEK_uc011lnn.1_Missense_Mutation_p.S31F|TEK_uc011lno.1_Missense_Mutation_p.S31F|TEK_uc011lnp.1_Intron|TEK_uc003zqj.1_Missense_Mutation_p.S8F	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	31	Extracellular (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		TTGATCAATTCCCTACCTCTT	0.458													13	113					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32635292	32635292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:32635292C>T	uc003zrg.1	-	1	376	c.286G>A	c.(286-288)GAT>AAT	p.D96N	uc003zrh.1_Intron	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	96					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CACCCTTCATCATTTACCAAG	0.512													27	115					0	0	1	0	0
APTX	54840	broad.mit.edu	37	9	32984776	32984776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:32984776G>A	uc003zrm.2	-	5	820	c.623C>T	c.(622-624)ACC>ATC	p.T208I	APTX_uc010mjm.2_RNA|APTX_uc003zrj.2_Missense_Mutation_p.T120I|APTX_uc011lns.1_Missense_Mutation_p.T29I|APTX_uc003zrl.2_Missense_Mutation_p.T34I|APTX_uc003zrn.2_Missense_Mutation_p.T120I|APTX_uc003zro.2_Missense_Mutation_p.T208I|APTX_uc003zrp.2_Missense_Mutation_p.T120I|APTX_uc003zrq.2_Missense_Mutation_p.T120I|APTX_uc003zrr.2_Missense_Mutation_p.T154I|APTX_uc003zrs.2_Missense_Mutation_p.T208I|APTX_uc003zrt.2_Missense_Mutation_p.T120I|APTX_uc003zru.2_Missense_Mutation_p.T154I|APTX_uc003zrv.2_Missense_Mutation_p.T222I|APTX_uc003zrw.2_Missense_Mutation_p.T136I|APTX_uc003zrx.2_Missense_Mutation_p.T208I|APTX_uc003zry.2_Missense_Mutation_p.T208I|APTX_uc003zrz.2_Missense_Mutation_p.T29I|APTX_uc003zsa.1_Missense_Mutation_p.T154I|APTX_uc003zsb.1_RNA|APTX_uc003zsc.1_RNA	NM_175072	NP_778242	Q7Z2E3	APTX_HUMAN	aprataxin isoform c	222	HIT.				cell death|double-strand break repair|regulation of protein stability|response to hydrogen peroxide|single strand break repair	chromatin|nucleolus|nucleoplasm	chromatin binding|damaged DNA binding|DNA 5'-adenosine monophosphate hydrolase activity|double-stranded DNA binding|double-stranded RNA binding|phosphoglycolate phosphatase activity|phosphoprotein binding|polynucleotide 3'-phosphatase activity|protein N-terminus binding|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0302)	GBM - Glioblastoma multiforme(74;0.105)		GGAAATGGAGGTCCACGGTAA	0.488								Direct_reversal_of_damage|Editing_and_processing_nucleases					10	39					0	0	1	0	0
SMU1	55234	broad.mit.edu	37	9	33076601	33076601	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:33076601C>A	uc003zsf.1	-	1	114	c.6G>T	c.(4-6)TCG>TCT	p.S2S	SMU1_uc010mjo.1_Silent_p.S2S|SMU1_uc010mjp.1_Silent_p.S2S|SMU1_uc011lnu.1_5'UTR	NM_018225	NP_060695	Q2TAY7	SMU1_HUMAN	smu-1 suppressor of mec-8 and unc-52 homolog	2						cytoplasm|nucleus				ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0227)	GBM - Glioblastoma multiforme(74;0.11)		CGATTTCGATCGACATAGCCG	0.627													4	83					0.150653	0.151501	1	1	0
DNAI1	27019	broad.mit.edu	37	9	34490045	34490045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:34490045G>A	uc003zum.2	+	6	617	c.424G>A	c.(424-426)GGA>AGA	p.G142R		NM_012144	NP_036276	Q9UI46	DNAI1_HUMAN	dynein, axonemal, intermediate chain 1	142					cell projection organization	cilium axoneme|cytoplasm|dynein complex|microtubule	motor activity				0	all_epithelial(49;0.244)		LUSC - Lung squamous cell carcinoma(29;0.0107)|STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.0222)		TTCAGAAACAGGAAACCTCGA	0.498									Kartagener_syndrome				5	18					0	0	1	0	0
ARID3C	138715	broad.mit.edu	37	9	34625778	34625778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:34625778C>T	uc011lon.1	-	2	352	c.352G>A	c.(352-354)GAA>AAA	p.E118K		NM_001017363	NP_001017363	A6NKF2	ARI3C_HUMAN	AT rich interactive domain 3C (BRIGHT- like)	118	ARID.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.175)		TCCAGAAATTCCTTCCTCTTG	0.532													5	71					0	0	1	0	0
C9orf131	138724	broad.mit.edu	37	9	35045536	35045536	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:35045536G>A	uc003zvw.2	+	2	2939	c.2910G>A	c.(2908-2910)GGG>GGA	p.G970G	C9orf131_uc003zvu.2_Silent_p.G922G|C9orf131_uc003zvv.2_Silent_p.G897G|C9orf131_uc003zvx.2_Silent_p.G935G	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	970											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			CAGTCACAGGGAAGAACCACC	0.552													6	52					0	0	1	0	0
RUSC2	9853	broad.mit.edu	37	9	35547857	35547857	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:35547857C>T	uc003zww.2	+	2	1594	c.1339C>T	c.(1339-1341)CTA>TTA	p.L447L	RUSC2_uc010mkq.2_RNA|RUSC2_uc003zwx.3_Silent_p.L447L	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	447						cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			TGAGTATTACCTATTCCAGAA	0.582													15	199					0	0	1	0	0
SIT1	27240	broad.mit.edu	37	9	35650597	35650597	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:35650597G>A	uc003zxe.1	-	2	235	c.138C>T	c.(136-138)GTC>GTT	p.V46V	SIT1_uc003zxf.1_Intron	NM_014450	NP_055265	Q9Y3P8	SIT1_HUMAN	SHP2-interacting transmembrane adaptor protein	46	Helical; (Potential).				regulation of T cell activation|signal transduction	integral to plasma membrane	kinase binding|SH2 domain binding				0			Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CCCCTAAGAGGACCCACAGTC	0.652													10	54					0	0	1	0	0
RGP1	9827	broad.mit.edu	37	9	35751721	35751721	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:35751721C>T	uc011lpf.1	+	7	873	c.732C>T	c.(730-732)AAC>AAT	p.N244N	GBA2_uc011lpb.1_5'Flank|GBA2_uc003zxw.2_5'Flank|GBA2_uc011lpc.1_5'Flank|GBA2_uc011lpd.1_5'Flank|RGP1_uc011lpe.1_Silent_p.N284N	NM_001080496	NP_001073965	Q92546	RGP1_HUMAN	RGP1 retrograde golgi transport homolog	244										ovary(1)	1	all_epithelial(49;0.167)		Lung(28;0.00416)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			GGACCTTAAACTTAGGGGAAG	0.517													5	89					0	0	1	0	0
GRHPR	9380	broad.mit.edu	37	9	37424932	37424932	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:37424932C>T	uc003zzu.1	+	2	215	c.174C>T	c.(172-174)CTC>CTT	p.L58L	GRHPR_uc010mlu.2_5'UTR|GRHPR_uc010mlv.1_5'UTR|GRHPR_uc003zzt.1_5'UTR	NM_012203	NP_036335	Q9UBQ7	GRHPR_HUMAN	glyoxylate reductase/hydroxypyruvate reductase	58					cellular nitrogen compound metabolic process|excretion|glyoxylate metabolic process	peroxisomal matrix	glycerate dehydrogenase activity|glyoxylate reductase (NADP) activity|hydroxypyruvate reductase activity|NAD binding|protein binding				0				GBM - Glioblastoma multiforme(29;0.00687)		TGCTCTGCCTCCTCTCCGACC	0.672													4	54					0	0	1	0	0
ZNF658	26149	broad.mit.edu	37	9	40773305	40773305	+	Missense_Mutation	SNP	G	A	A	rs146060713		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:40773305G>A	uc004abs.2	-	5	2122	c.1970C>T	c.(1969-1971)CCC>CTC	p.P657L	ZNF658_uc010mmm.1_Intron|ZNF658_uc010mmn.1_Missense_Mutation_p.P657L	NM_033160	NP_149350	Q5TYW1	ZN658_HUMAN	zinc finger protein 658	657					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		ACATTCATAGGGTTTCTCCCC	0.423													11	63					0	0	1	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71532595	71532595	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:71532595G>A	uc004agu.2	+	9	1208	c.903G>A	c.(901-903)AAG>AAA	p.K301K	PIP5K1B_uc011lrq.1_Silent_p.K301K|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	301	PIPK.					endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		GGATGCAGAAGGTTCTCTACT	0.502													11	52					0	0	1	0	0
PRKACG	5568	broad.mit.edu	37	9	71628021	71628021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:71628021C>T	uc004agy.2	-	1	1019	c.988G>A	c.(988-990)GAC>AAC	p.D330N		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	330	AGC-kinase C-terminal.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						TCCTCGTAGTCGTCAAAGTTA	0.527													5	67					0	0	1	0	0
PRKACG	5568	broad.mit.edu	37	9	71628386	71628386	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:71628386G>A	uc004agy.2	-	1	654	c.623C>T	c.(622-624)CCC>CTC	p.P208L		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	208	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						GATGATCTCGGGGGCCAGGTA	0.627													4	30					0	0	1	0	0
APBA1	320	broad.mit.edu	37	9	72047482	72047482	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:72047482G>A	uc004ahh.2	-	12	2688	c.2412C>T	c.(2410-2412)ATC>ATT	p.I804I		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	804	PDZ 2.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						GAATGTGGACGATCTTCTCGT	0.622													7	18					0	0	1	0	0
APBA1	320	broad.mit.edu	37	9	72055996	72055996	+	Silent	SNP	G	A	A	rs143924269	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:72055996G>A	uc004ahh.2	-	11	2493	c.2217C>T	c.(2215-2217)ATC>ATT	p.I739I		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	739	PDZ 1.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						GACATCTCACGATATTCAGCT	0.458													10	59					0	0	1	0	0
KLF9	687	broad.mit.edu	37	9	73002723	73002723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:73002723C>T	uc004aht.2	-	2	1998	c.704G>A	c.(703-705)CGA>CAA	p.R235Q		NM_001206	NP_001197	Q13886	KLF9_HUMAN	Kruppel-like factor 9	235					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CTTTTTCGATCGCTTGATCAT	0.597													5	54					0	0	1	0	0
TMEM2	23670	broad.mit.edu	37	9	74319525	74319525	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:74319525G>A	uc011lsa.1	-	18	3720	c.3180C>T	c.(3178-3180)CTC>CTT	p.L1060L	TMEM2_uc011lrz.1_Silent_p.L53L|TMEM2_uc010mos.2_Silent_p.L997L|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	1060						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		TGAAGTTGACGAGGTATAGAA	0.428													6	48					0	0	1	0	0
TMC1	117531	broad.mit.edu	37	9	75403355	75403355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:75403355G>A	uc004aiz.1	+	14	1525	c.985G>A	c.(985-987)GAA>AAA	p.E329K	TMC1_uc010moz.1_Missense_Mutation_p.E287K|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Missense_Mutation_p.E183K|TMC1_uc010mpa.1_Missense_Mutation_p.E183K	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	329	Cytoplasmic (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						CGGCAATCCTGAAACAGCAGA	0.393													4	25					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77457104	77457104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:77457104C>T	uc004ajl.1	-	4	546	c.308G>A	c.(307-309)GGA>GAA	p.G103E	TRPM6_uc004ajk.1_Missense_Mutation_p.G98E|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.G103E|TRPM6_uc010mpd.1_Missense_Mutation_p.G103E|TRPM6_uc010mpe.1_Missense_Mutation_p.G103E|TRPM6_uc004ajn.1_Missense_Mutation_p.G103E	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	103	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						GGTGTGCTCTCCATCTTGGAA	0.323													9	43					0	0	1	0	0
PCSK5	5125	broad.mit.edu	37	9	78686688	78686688	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:78686688A>T	uc004ajz.2	+	7	1306	c.768A>T	c.(766-768)AAA>AAT	p.K256N	PCSK5_uc004ajy.2_Missense_Mutation_p.K256N|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	256	Catalytic.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						TTGAAGCAAAATCAGTTAGCT	0.557													25	96					0	0	1	0	0
GCNT1	2650	broad.mit.edu	37	9	79118281	79118281	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:79118281G>A	uc010mpf.2	+	3	1325	c.984G>A	c.(982-984)AGG>AGA	p.R328R	GCNT1_uc010mpg.2_Silent_p.R328R|GCNT1_uc010mph.2_Silent_p.R328R|GCNT1_uc004akf.3_Silent_p.R328R|GCNT1_uc010mpi.2_Silent_p.R328R|GCNT1_uc004akh.3_Silent_p.R328R	NM_001490	NP_001481	Q02742	GCNT1_HUMAN	beta-1,3-galactosyl-O-glycosyl-glycoprotein	328	Lumenal (Potential).|Catalytic (By similarity).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity				0						CCATCCAAAGGATTCCTGAAG	0.488													5	26					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79323007	79323007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:79323007C>T	uc010mpk.2	-	8	4307	c.4183G>A	c.(4183-4185)GAG>AAG	p.E1395K		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1395					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TCTGGTTCCTCGGTTTGAGGA	0.463													6	20					0	0	1	0	0
PSAT1	29968	broad.mit.edu	37	9	80919828	80919828	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:80919828C>T	uc004ala.2	+	4	437	c.369C>T	c.(367-369)ATC>ATT	p.I123I	PSAT1_uc004alb.2_Silent_p.I123I	NM_058179	NP_478059	Q9Y617	SERC_HUMAN	phosphoserine aminotransferase 1 isoform 1	123					L-serine biosynthetic process|pyridoxine biosynthetic process		O-phospho-L-serine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)	CTATAAATATCGTTCACCCTA	0.502													6	35					0	0	1	0	0
FLJ46321	389763	broad.mit.edu	37	9	84608299	84608299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:84608299G>A	uc004amn.2	+	4	2961	c.2914G>A	c.(2914-2916)GAA>AAA	p.E972K		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	972						integral to membrane					0						TTTTCAAGGAGAAAAGTTGGG	0.517													17	72					0	0	1	0	0
C9orf64	84267	broad.mit.edu	37	9	86559760	86559760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:86559760G>A	uc004anb.2	-	3	990	c.742C>T	c.(742-744)CAT>TAT	p.H248Y	C9orf64_uc004anc.2_Missense_Mutation_p.H107Y	NM_032307	NP_115683	Q5T6V5	CI064_HUMAN	hypothetical protein LOC84267	248											0						GCTCCAAGATGAGCAAGAACC	0.403													5	48					0	0	1	0	0
GOLM1	51280	broad.mit.edu	37	9	88692472	88692472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:88692472C>T	uc004aol.2	-	3	362	c.164G>A	c.(163-165)AGG>AAG	p.R55K	GOLM1_uc010mqd.1_RNA|GOLM1_uc004aom.2_Missense_Mutation_p.R55K	NM_016548	NP_057632	Q8NBJ4	GOLM1_HUMAN	golgi membrane protein 1	55	Potential.|Lumenal (Potential).					Golgi apparatus|integral to plasma membrane					0						TGCAGCCGCCCTGCGGACCCT	0.607													4	69					0	0	1	0	0
DAPK1	1612	broad.mit.edu	37	9	90318032	90318032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:90318032C>T	uc004apc.2	+	25	3098	c.2960C>T	c.(2959-2961)TCG>TTG	p.S987L	DAPK1_uc004apd.2_Missense_Mutation_p.S987L|DAPK1_uc011ltg.1_Missense_Mutation_p.S921L|DAPK1_uc011lth.1_Missense_Mutation_p.S724L	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	987					apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						CAGCTGATGTCGCTGCAGCAG	0.597									Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				5	62					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90497824	90497824	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:90497824C>T	uc004app.3	+	1	53	c.18C>T	c.(16-18)ATC>ATT	p.I6I	C9orf79_uc004apo.1_Silent_p.I6I	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	6						integral to membrane				ovary(3)	3						ATCTCGTCATCCCTCTAGGGA	0.607													5	43					0	0	1	0	0
FAM75C1	441452	broad.mit.edu	37	9	90535331	90535331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:90535331G>A	uc010mqi.2	+	4	538	c.509G>A	c.(508-510)CGA>CAA	p.R170Q	FAM75C1_uc004apq.3_Missense_Mutation_p.R153Q	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						CCGGATCCTCGAACCAAGCAT	0.592													29	132					0	0	1	0	0
FAM75C1	441452	broad.mit.edu	37	9	90535853	90535853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:90535853C>T	uc010mqi.2	+	4	1060	c.1031C>T	c.(1030-1032)TCA>TTA	p.S344L	FAM75C1_uc004apq.3_Missense_Mutation_p.S327L	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						CCCTTTATTTCATCCACACCC	0.567													13	195					0	0	1	0	0
FAM75C1	441452	broad.mit.edu	37	9	90536029	90536029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:90536029C>T	uc010mqi.2	+	4	1236	c.1207C>T	c.(1207-1209)CCT>TCT	p.P403S	FAM75C1_uc004apq.3_Missense_Mutation_p.P386S	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						AACTCAGCACCCTGAAAGGCC	0.488													38	226					0	0	1	0	0
FAM75C1	441452	broad.mit.edu	37	9	90536445	90536445	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:90536445C>T	uc010mqi.2	+	4	1652	c.1623C>T	c.(1621-1623)TTC>TTT	p.F541F	FAM75C1_uc004apq.3_Silent_p.F524F	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						TGGAAAGCTTCCCAGGGAAGG	0.537													6	84					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	90746045	90746045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:90746045G>A	uc011lti.1	-	4	1936	c.1907C>T	c.(1906-1908)TCC>TTC	p.S636F						SubName: Full=cDNA FLJ59639;																		CTCAAGGAAGGAAAGCACCTG	0.557													16	174					0	0	1	0	0
SECISBP2	79048	broad.mit.edu	37	9	91943605	91943605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:91943605C>T	uc004aqj.1	+	5	685	c.605C>T	c.(604-606)TCC>TTC	p.S202F	SECISBP2_uc010mqn.1_Missense_Mutation_p.S202F|SECISBP2_uc004aqi.1_Missense_Mutation_p.S129F|SECISBP2_uc011ltk.1_Missense_Mutation_p.S201F|SECISBP2_uc004aqk.1_Missense_Mutation_p.S129F|SECISBP2_uc010mqo.1_5'UTR|SECISBP2_uc011ltl.1_Missense_Mutation_p.S134F	NM_024077	NP_076982	Q96T21	SEBP2_HUMAN	SECIS binding protein 2	202					translation	nucleus	mRNA 3'-UTR binding			ovary(2)|skin(1)	3						GACAGGAAATCCAGAATCATT	0.353													7	29					0	0	1	0	0
SEMA4D	10507	broad.mit.edu	37	9	91994326	91994326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:91994326C>T	uc004aqo.1	-	18	2454	c.1882G>A	c.(1882-1884)GAG>AAG	p.E628K	SEMA4D_uc011ltm.1_Intron|SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqp.1_Missense_Mutation_p.E626K	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	628	Ig-like C2-type.|Extracellular (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						TTAACCCTCTCCTCTGACAGG	0.532													49	256					0	0	1	0	0
BICD2	23299	broad.mit.edu	37	9	95480936	95480936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:95480936G>A	uc004aso.1	-	5	2048	c.1991C>T	c.(1990-1992)GCC>GTC	p.A664V	BICD2_uc004asp.1_Missense_Mutation_p.A664V	NM_015250	NP_056065	Q8TD16	BICD2_HUMAN	bicaudal D homolog 2 isoform 2	664	Interacts with RAB6A (By similarity).				microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule	cytoplasmic vesicle|cytoskeleton|Golgi apparatus|plasma membrane	Rab GTPase binding			skin(1)	1						CTTGTCCACGGCGGGGCCCAG	0.622													17	201					0	0	1	0	0
ZNF484	83744	broad.mit.edu	37	9	95610138	95610138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:95610138C>T	uc004asu.1	-	5	1080	c.931G>A	c.(931-933)GAT>AAT	p.D311N	ANKRD19_uc004asr.3_Intron|ZNF484_uc011lub.1_Missense_Mutation_p.D313N|ZNF484_uc010mrb.1_Missense_Mutation_p.D275N|ZNF484_uc004asv.1_Missense_Mutation_p.D275N	NM_031486	NP_113674	Q5JVG2	ZN484_HUMAN	zinc finger protein 484 isoform a	311					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGGGAAAAATCCTTCTCATAT	0.433													11	38					0	0	1	0	0
FAM22F	54754	broad.mit.edu	37	9	97081280	97081280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:97081280C>T	uc004aup.1	-	7	1759	c.1738G>A	c.(1738-1740)GGA>AGA	p.G580R		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	580											0		Acute lymphoblastic leukemia(62;0.136)				TCCTGACATCCCAAAAGCACA	0.667													4	48					0	0	1	0	0
HIATL1	84641	broad.mit.edu	37	9	97221461	97221461	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:97221461C>T	uc004aur.2	+	12	1557	c.1288C>T	c.(1288-1290)CCG>TCG	p.P430S	HIATL1_uc011luh.1_3'UTR	NM_032558	NP_115947	Q5SR56	HIAL1_HUMAN	hippocampus abundant transcript-like 1	430	Helical; (Potential).				transmembrane transport	integral to membrane|plasma membrane	protein binding|transporter activity			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				CATCCCAGGCCCGCCGTTTTT	0.388													4	47					0	0	1	0	0
FBP2	8789	broad.mit.edu	37	9	97329621	97329621	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:97329621C>T	uc004auv.2	-	5	703	c.636G>A	c.(634-636)CTG>CTA	p.L212L	uc004aus.1_Intron|uc004aut.1_Intron|uc004auu.2_Intron	NM_003837	NP_003828	O00757	F16P2_HUMAN	fructose-1,6-bisphosphatase 2	212					fructose metabolic process|gluconeogenesis	cytosol	fructose 1,6-bisphosphate 1-phosphatase activity|fructose-2,6-bisphosphate 2-phosphatase activity|metal ion binding				0		Acute lymphoblastic leukemia(62;0.136)				AGCCCTCATTCAGGCTGTAAA	0.448													15	91					0	0	1	0	0
TDRD7	23424	broad.mit.edu	37	9	100204051	100204051	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:100204051A>G	uc004axj.2	+	6	974	c.749A>G	c.(748-750)AAT>AGT	p.N250S	TDRD7_uc011lux.1_Missense_Mutation_p.N176S	NM_014290	NP_055105	Q8NHU6	TDRD7_HUMAN	tudor domain containing 7	250	Lotus/OST-HTH 2.				lens fiber cell differentiation|lens morphogenesis in camera-type eye|posttranscriptional regulation of gene expression|spermatogenesis	chromatoid body	mRNA binding			ovary(2)|pancreas(1)	3		Acute lymphoblastic leukemia(62;0.158)				AAGCATAACAATGGCATTTGG	0.343													4	4					0	0	1	0	0
C9orf156	51531	broad.mit.edu	37	9	100678503	100678503	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:100678503C>T	uc004axv.1	-	2	271	c.194G>A	c.(193-195)AGG>AAG	p.R65K	C9orf156_uc004axw.1_5'UTR|C9orf156_uc004axx.1_5'UTR|C9orf156_uc010msq.1_5'UTR	NM_016481	NP_057565	Q9BU70	NAP1_HUMAN	Nef associated protein 1	65					interspecies interaction between organisms		hydrolase activity				0		Acute lymphoblastic leukemia(62;0.158)				ATTAAAGATCCTCTTTCTAAT	0.418													7	22					0	0	1	0	0
HEMGN	55363	broad.mit.edu	37	9	100692631	100692631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:100692631G>A	uc004axy.2	-	3	1154	c.1046C>T	c.(1045-1047)TCT>TTT	p.S349F	HEMGN_uc004axz.2_Missense_Mutation_p.S349F	NM_197978	NP_932095	Q9BXL5	HEMGN_HUMAN	hemogen	349					cell differentiation|multicellular organismal development					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				ATAGTCTTCAGAATGAGGTGT	0.363													11	123					0	0	1	0	0
GABBR2	9568	broad.mit.edu	37	9	101340338	101340338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:101340338C>T	uc004ays.2	-	2	494	c.338G>A	c.(337-339)GGG>GAG	p.G113E		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	113	Extracellular (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	GGCTTTCAACCCTTTTGCGTT	0.473													5	43					0	0	1	0	0
COL15A1	1306	broad.mit.edu	37	9	101777698	101777698	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:101777698G>A	uc004azb.1	+	10	1560	c.1354_splice	c.e10-1	p.G452_splice		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor						angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				TTTCATTTCAGGGTCCAAGCA	0.547													7	43					0	0	1	0	0
COL15A1	1306	broad.mit.edu	37	9	101804381	101804382	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:101804381_101804382GG>AA	uc004azb.1	+	24	2772_2773	c.2566_2567GG>AA	c.(2566-2568)GGA>AAA	p.G856K		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	856	Triple-helical region 4 (COL4).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				AGGACTAAAAGGAGAACAGGTA	0.406													4	57					0	0	1	0	0
NR4A3	8013	broad.mit.edu	37	9	102590625	102590625	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:102590625C>T	uc004baf.1	+	3	1030	c.301C>T	c.(301-303)CAC>TAC	p.H101Y	NR4A3_uc004bae.2_Missense_Mutation_p.H101Y|NR4A3_uc004bag.1_Missense_Mutation_p.H101Y|NR4A3_uc004bai.2_Missense_Mutation_p.H112Y	NM_006981	NP_008912	Q92570	NR4A3_HUMAN	nuclear receptor subfamily 4, group A, member 3	101	Poly-His.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|thyroid hormone receptor activity|zinc ion binding		EWSR1/NR4A3(140)|TAF15/NR4A3(33)	bone(173)	173		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				tcaccaccaccaccaccacca	0.478			T	EWSR1	extraskeletal myxoid chondrosarcoma								10	17					0	0	1	0	0
INVS	27130	broad.mit.edu	37	9	103002357	103002357	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:103002357G>A	uc004bap.1	+	6	843	c.631G>A	c.(631-633)GAG>AAG	p.E211K	INVS_uc010mta.1_Missense_Mutation_p.E115K|INVS_uc011lve.1_Missense_Mutation_p.E115K|INVS_uc004bao.1_Missense_Mutation_p.E211K|INVS_uc004baq.1_Missense_Mutation_p.E115K|INVS_uc004bar.1_Missense_Mutation_p.E115K|INVS_uc010mtb.1_5'UTR	NM_014425	NP_055240	Q9Y283	INVS_HUMAN	inversin isoform a	211	ANK 6.				negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|membrane|microtubule|nucleus|spindle	calmodulin binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.056)				TGCTCCAACAGAGTCTTTACT	0.398													6	26					0	0	1	0	0
OR13C8	138802	broad.mit.edu	37	9	107331704	107331704	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:107331704C>T	uc011lvo.1	+	1	256	c.256C>T	c.(256-258)CTG>TTG	p.L86L		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGCCAGCTTTCTGGCAGTAAA	0.468													14	102					0	0	1	0	0
OR13C8	138802	broad.mit.edu	37	9	107332265	107332265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:107332265G>A	uc011lvo.1	+	1	817	c.817G>A	c.(817-819)GAA>AAA	p.E273K		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	273	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTCAGGTAATGAAGACATCAT	0.453													4	37					0	0	1	0	0
ZNF462	58499	broad.mit.edu	37	9	109689690	109689690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:109689690C>T	uc004bcz.2	+	3	3786	c.3497C>T	c.(3496-3498)TCC>TTC	p.S1166F	ZNF462_uc010mto.2_Missense_Mutation_p.S1014F|ZNF462_uc004bda.2_Missense_Mutation_p.S1014F	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1166					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						CCCCAAGGCTCCCCCCGGCCA	0.542													15	85					0	0	1	0	0
ZNF462	58499	broad.mit.edu	37	9	109691019	109691019	+	Missense_Mutation	SNP	C	T	T	rs149337252		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:109691019C>T	uc004bcz.2	+	3	5115	c.4826C>T	c.(4825-4827)TCC>TTC	p.S1609F	ZNF462_uc010mto.2_Missense_Mutation_p.S1457F|ZNF462_uc004bda.2_Missense_Mutation_p.S1457F	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1609					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						GATGTCTTTTCCCAGTCGCCC	0.542													4	60					0	0	1	0	0
EPB41L4B	54566	broad.mit.edu	37	9	111938890	111938890	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:111938890C>T	uc004bdz.1	-	25	2869	c.2574G>A	c.(2572-2574)GAG>GAA	p.E858E		NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	858						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						TGGAGACGGTCTCTGTCAAAG	0.552													5	38					0	0	1	0	0
EPB41L4B	54566	broad.mit.edu	37	9	112018715	112018715	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:112018715C>T	uc004bdz.1	-	8	1093	c.798G>A	c.(796-798)GCG>GCA	p.A266A	EPB41L4B_uc004bea.2_Silent_p.A266A	NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	266	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						CCAGCCACTTCGCTTTATTCA	0.438													13	82					0	0	1	0	0
EPB41L4B	54566	broad.mit.edu	37	9	112029764	112029764	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:112029764C>T	uc004bdz.1	-	4	817	c.522G>A	c.(520-522)GAG>GAA	p.E174E	EPB41L4B_uc004bea.2_Silent_p.E174E	NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	174	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						TTGTAAACTCCTCACGAAGGT	0.443													6	44					0	0	1	0	0
C9orf152	401546	broad.mit.edu	37	9	112963346	112963346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:112963346G>A	uc011lwk.1	-	2	1156	c.602C>T	c.(601-603)CCT>CTT	p.P201L		NM_001012993	NP_001013011	Q5JTZ5	CI152_HUMAN	hypothetical protein LOC401546	201											0						TATGGAAAGAGGACATTGAGT	0.527													13	46					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113208209	113208209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:113208209C>T	uc010mtz.2	-	26	4708	c.4371G>A	c.(4369-4371)ATG>ATA	p.M1457I	SVEP1_uc010mua.1_Missense_Mutation_p.M1457I	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1457	Pentaxin.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CAGAGGATTTCATCCAGAAGG	0.453													8	44					0	0	1	0	0
KIAA1958	158405	broad.mit.edu	37	9	115421564	115421564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:115421564G>A	uc004bgf.1	+	4	1541	c.1366G>A	c.(1366-1368)GAG>AAG	p.E456K	KIAA1958_uc011lwx.1_Missense_Mutation_p.E484K	NM_133465	NP_597722	Q8N8K9	K1958_HUMAN	hypothetical protein LOC158405	456										skin(1)	1						GAAGTTGAACGAGCTGCTCGA	0.547													7	59					0	0	1	0	0
COL27A1	85301	broad.mit.edu	37	9	116931443	116931443	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:116931443C>T	uc011lxl.1	+	3	1608	c.1608C>T	c.(1606-1608)CCC>CCT	p.P536P	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Silent_p.P386P	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	536	Pro-rich.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						GCAAGAAGCCCATTGGATCGG	0.632													13	71					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117808906	117808906	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:117808906G>A	uc004bjj.3	-	17	5270	c.4908C>T	c.(4906-4908)TTC>TTT	p.F1636F	TNC_uc010mvf.2_Intron	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1636	Fibronectin type-III 12.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						AGGACAGACGGAAACCGTCTG	0.478													3	18					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	118949539	118949539	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:118949539G>A	uc004bjn.2	+	2	903	c.522G>A	c.(520-522)TTG>TTA	p.L174L	PAPPA_uc011lxp.1_5'UTR|PAPPA_uc011lxq.1_5'UTR	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	174					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TTTTCTCCTTGAAGACAGACC	0.527													4	45					0	0	1	0	0
ASTN2	23245	broad.mit.edu	37	9	119626013	119626013	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:119626013C>T	uc004bjs.1	-	11	1991	c.1890_splice	c.e11-1	p.R630_splice	ASTN2_uc004bjr.1_Splice_Site_p.R626_splice|ASTN2_uc004bjt.1_Splice_Site_p.R579_splice	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c							integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CGCTTCTTCCCTTGGAGAGAA	0.423													3	12					0	0	1	0	0
TRAF1	7185	broad.mit.edu	37	9	123676511	123676511	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:123676511A>G	uc004bku.1	-	4	866	c.294_splice	c.e4+1	p.K98_splice	TRAF1_uc011lyg.1_Splice_Site|TRAF1_uc010mvl.1_Splice_Site_p.K98_splice	NM_005658	NP_005649	Q13077	TRAF1_HUMAN	TNF receptor-associated factor 1						apoptosis|positive regulation of NF-kappaB transcription factor activity|protein complex assembly|regulation of apoptosis|signal transduction	cytoplasm	protein binding|zinc ion binding			skin(2)|ovary(1)	3						TCAGATGCTTACCTTGAAGGA	0.512													5	30					0	0	1	0	0
LHX6	26468	broad.mit.edu	37	9	124988736	124988736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:124988736G>A	uc010mvw.2	-	3	402	c.293C>T	c.(292-294)TCC>TTC	p.S98F	LHX6_uc004blx.3_Missense_Mutation_p.S127F|LHX6_uc004bly.3_Missense_Mutation_p.S127F	NM_014368	NP_055183	Q9UPM6	LHX6_HUMAN	LIM homeobox protein 6 isoform 1	98	LIM zinc-binding 1.|Required for interaction with LBD1 (By similarity).				cell maturation|cerebral cortex GABAergic interneuron migration|cerebral cortex radially oriented cell migration|cerebral cortex tangential migration	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GCGACACACGGAGCACTCGAG	0.637													21	110					0	0	1	0	0
RBM18	92400	broad.mit.edu	37	9	125004171	125004171	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:125004171G>A	uc004bma.2	-	6	731	c.565C>T	c.(565-567)CGA>TGA	p.R189*	RBM18_uc004blz.2_RNA|RBM18_uc010mvy.2_RNA|RBM18_uc011lyp.1_RNA	NM_033117	NP_149108	Q96H35	RBM18_HUMAN	RNA binding motif protein 18	189							nucleotide binding|RNA binding				0						CATCATCTTCGAGATTTCCAT	0.403													5	30					0	0	1	0	0
PTGS1	5742	broad.mit.edu	37	9	125148747	125148747	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:125148747C>T	uc004bmg.1	+	9	1167	c.1032C>T	c.(1030-1032)ATC>ATT	p.I344I	PTGS1_uc011lys.1_Silent_p.I319I|PTGS1_uc010mwb.1_Silent_p.I235I|PTGS1_uc004bmf.1_Silent_p.I344I|PTGS1_uc004bmh.1_Silent_p.I235I|PTGS1_uc011lyt.1_Silent_p.I235I	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	344					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	AGATTGTCATCGAGGAGTACG	0.532													6	93					0	0	1	0	0
PTGS1	5742	broad.mit.edu	37	9	125148990	125148990	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:125148990C>T	uc004bmg.1	+	9	1410	c.1275C>T	c.(1273-1275)TTC>TTT	p.F425F	PTGS1_uc011lys.1_Intron|PTGS1_uc010mwb.1_Intron|PTGS1_uc004bmf.1_Intron|PTGS1_uc004bmh.1_Silent_p.F316F|PTGS1_uc011lyt.1_Silent_p.F316F	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	425					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	TGGATGCCTTCTCTCGCCAGA	0.373													5	44					0	0	1	0	0
OR1N1	138883	broad.mit.edu	37	9	125289032	125289032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:125289032G>A	uc004bmn.1	-	1	541	c.541C>T	c.(541-543)CCT>TCT	p.P181S		NM_012363	NP_036495	Q8NGS0	OR1N1_HUMAN	olfactory receptor, family 1, subfamily N,	181	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)|breast(1)|skin(1)	3						TTCAGGACAGGAGTGATGTCA	0.493													5	17					0	0	1	0	0
OR1L8	138881	broad.mit.edu	37	9	125330750	125330750	+	Silent	SNP	T	G	G	rs111916014		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:125330750T>G	uc004bmp.1	-	1	7	c.7A>C	c.(7-9)AGA>CGA	p.R3R		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						TGGTTGATTCTTTCCATTGAC	0.433													4	26					0	0	1	0	0
OR1L1	26737	broad.mit.edu	37	9	125424379	125424379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:125424379C>T	uc011lza.1	+	1	535	c.535C>T	c.(535-537)CCC>TCC	p.P179S		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	179	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						CATATGTAATCCCTTCCACTA	0.468													23	99					0	0	1	0	0
RC3H2	54542	broad.mit.edu	37	9	125621201	125621201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:125621201G>A	uc010mwc.1	-	12	2271	c.2030C>T	c.(2029-2031)CCG>CTG	p.P677L	RC3H2_uc004bnc.2_RNA|RC3H2_uc004bnd.1_Missense_Mutation_p.P677L|RC3H2_uc004bne.3_Missense_Mutation_p.P677L	NM_001100588	NP_001094058	Q9HBD1	RC3H2_HUMAN	ring finger and CCCH-type zinc finger domains 2	677	Pro-rich.					cell surface|endomembrane system|membrane|membrane fraction|perinuclear region of cytoplasm	DNA binding|zinc ion binding			ovary(2)|lung(2)	4						ATACGGCTGCGGAGGAGGAGG	0.537													10	96					0	0	1	0	0
CRB2	286204	broad.mit.edu	37	9	126133132	126133133	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:126133132_126133133CC>TT	uc004bnx.1	+	7	1892_1893	c.1800_1801CC>TT	c.(1798-1803)CTCCTG>CTTTTG	p.600_601LL>LL	CRB2_uc004bnw.1_Silent_p.600_601LL>LL	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	600_601	Extracellular (Potential).|Laminin G-like 1.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						AGAACGTCCTCCTGGGCTGTGA	0.658													8	32					0	0	1	0	0
CRB2	286204	broad.mit.edu	37	9	126139194	126139194	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:126139194C>T	uc004bnx.1	+	13	3803	c.3711C>T	c.(3709-3711)CTC>CTT	p.L1237L		NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	1237	Helical; (Potential).					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						TCCTCCTCCTCCTCCTGGGCC	0.687													5	20					0	0	1	0	0
DENND1A	57706	broad.mit.edu	37	9	126433650	126433650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:126433650C>T	uc004bnz.1	-	7	606	c.373G>A	c.(373-375)GAA>AAA	p.E125K	DENND1A_uc004bny.1_5'UTR|DENND1A_uc011lzm.1_Missense_Mutation_p.E93K|DENND1A_uc004boa.1_Missense_Mutation_p.E125K|DENND1A_uc004bob.1_Missense_Mutation_p.E95K|DENND1A_uc004boc.2_Missense_Mutation_p.E93K	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	125	DENN.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						CACTGATTTTCCTGAAAGAAA	0.502													5	69					0	0	1	0	0
NEK6	10783	broad.mit.edu	37	9	127083792	127083792	+	Missense_Mutation	SNP	G	A	A	rs143094065		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:127083792G>A	uc004bog.2	+	5	498	c.349G>A	c.(349-351)GAG>AAG	p.E117K	NEK6_uc004bof.2_Missense_Mutation_p.E135K|NEK6_uc004boh.2_Missense_Mutation_p.E151K|NEK6_uc010mwj.2_Missense_Mutation_p.E70K|NEK6_uc010mwk.2_Missense_Mutation_p.E117K|NEK6_uc004boi.2_Missense_Mutation_p.E117K	NM_014397	NP_055212	Q9HC98	NEK6_HUMAN	NIMA-related kinase 6 isoform 2	117	Protein kinase.				apoptosis|cell division|chromosome segregation|mitosis|peptidyl-serine phosphorylation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of mitotic metaphase/anaphase transition	cytoplasm|nucleus	ATP binding|kinesin binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|kidney(1)	3						CGAAGACAACGAGCTGAACAT	0.567													4	50					0	0	1	0	0
GOLGA1	2800	broad.mit.edu	37	9	127683504	127683504	+	Silent	SNP	A	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:127683504A>T	uc004bpc.2	-	10	1089	c.747T>A	c.(745-747)GCT>GCA	p.A249A	GOLGA1_uc010mws.2_RNA|GOLGA1_uc010mwt.1_Silent_p.A224A	NM_002077	NP_002068	Q92805	GOGA1_HUMAN	golgin 97	249	Potential.					Golgi cisterna membrane				ovary(1)	1						CTGTTTTTGAAGCTATCACAT	0.373													5	85					0	0	1	0	0
RABEPK	10244	broad.mit.edu	37	9	127982863	127982863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:127982863C>T	uc004bpi.2	+	6	583	c.410C>T	c.(409-411)TCC>TTC	p.S137F	RABEPK_uc004bph.1_3'UTR|RABEPK_uc004bpj.2_Missense_Mutation_p.S86F|RABEPK_uc004bpk.2_Missense_Mutation_p.S137F|RABEPK_uc004bpl.1_Missense_Mutation_p.S86F|RABEPK_uc004bpm.2_Missense_Mutation_p.S137F	NM_005833	NP_005824	Q7Z6M1	RABEK_HUMAN	Rab9 effector protein with kelch motifs	137	Kelch 2.				receptor-mediated endocytosis|vesicle docking involved in exocytosis	endosome membrane|plasma membrane				ovary(1)	1						CCCCCACCATCCCCAAGAACA	0.572													4	68					0	0	1	0	0
RABEPK	10244	broad.mit.edu	37	9	127990199	127990199	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:127990199C>T	uc004bpi.2	+	7	710	c.537C>T	c.(535-537)ACC>ACT	p.T179T	RABEPK_uc004bpj.2_Silent_p.T128T|RABEPK_uc004bpk.2_Silent_p.T179T|RABEPK_uc004bpl.1_Silent_p.T128T|RABEPK_uc004bpm.2_Silent_p.T179T	NM_005833	NP_005824	Q7Z6M1	RABEK_HUMAN	Rab9 effector protein with kelch motifs	179	Kelch 3.				receptor-mediated endocytosis|vesicle docking involved in exocytosis	endosome membrane|plasma membrane				ovary(1)	1						ACACTCTGACCTGGTCACAGC	0.488													8	33					0	0	1	0	0
LMX1B	4010	broad.mit.edu	37	9	129458637	129458637	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:129458637C>T	uc004bqj.2	+	8	1097	c.1047C>T	c.(1045-1047)TTC>TTT	p.F349F	LMX1B_uc004bqi.2_Silent_p.F342F|LMX1B_uc011maa.1_Silent_p.F353F	NM_002316	NP_002307	O60663	LMX1B_HUMAN	LIM homeobox transcription factor 1, beta	349					dorsal/ventral pattern formation|in utero embryonic development	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GCGACTGCTTCCTCGGCTCCT	0.627									Nail-Patella_Syndrome				21	106					0	0	1	0	0
ZNF79	7633	broad.mit.edu	37	9	130206785	130206785	+	Missense_Mutation	SNP	G	A	A	rs148604589	by1000genomes	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:130206785G>A	uc004bqw.3	+	5	1220	c.806G>A	c.(805-807)CGA>CAA	p.R269Q	ZNF79_uc011maf.1_Missense_Mutation_p.R245Q|ZNF79_uc011mag.1_Missense_Mutation_p.R245Q	NM_007135	NP_009066	Q15937	ZNF79_HUMAN	zinc finger protein 79	269	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						AAACACCAGCGAACCCACACC	0.522													8	63					0	0	1	0	0
LRSAM1	90678	broad.mit.edu	37	9	130219603	130219603	+	Silent	SNP	C	T	T	rs113869335		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:130219603C>T	uc004brb.1	+	6	528	c.183C>T	c.(181-183)ATC>ATT	p.I61I	LRSAM1_uc010mxk.1_Silent_p.I61I|LRSAM1_uc004brc.1_Silent_p.I61I|LRSAM1_uc004brd.1_Silent_p.I61I	NM_001005373	NP_001005373	Q6UWE0	LRSM1_HUMAN	leucine rich repeat and sterile alpha motif	61	LRR 2.				negative regulation of endocytosis|non-lytic virus budding|protein autoubiquitination|protein catabolic process|protein polyubiquitination|protein transport|ubiquitin-dependent endocytosis	cytoplasm|extracellular region|membrane part	hormone activity|ubiquitin-protein ligase activity|zinc ion binding				0						AGGTGCTGATCGTCCACACGA	0.642													5	34					0	0	1	0	0
PIP5KL1	138429	broad.mit.edu	37	9	130687489	130687489	+	Missense_Mutation	SNP	G	A	A	rs145403966		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:130687489G>A	uc011mao.1	-	9	859	c.814C>T	c.(814-816)CTC>TTC	p.L272F	PIP5KL1_uc004bsu.2_Missense_Mutation_p.L69F	NM_001135219	NP_001128691	Q5T9C9	PI5L1_HUMAN	phosphatidylinositol-4-phosphate 5-kinase-like 1	272	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			lung(1)|kidney(1)	2						AGCTCCCGGAGGAAGGTGGTA	0.567													6	69					0	0	1	0	0
FAM102A	399665	broad.mit.edu	37	9	130710405	130710405	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:130710405G>A	uc004bsx.1	-	6	640	c.561C>T	c.(559-561)ACC>ACT	p.T187T	FAM102A_uc004bsw.1_Silent_p.T45T|FAM102A_uc004bsy.1_5'UTR	NM_001035254	NP_001030331	Q5T9C2	F102A_HUMAN	early estrogen-induced gene 1 protein isoform a	187	Ser-rich.									ovary(1)	1						TCAGGGAGTTGGTGCTGCTGC	0.652													5	68					0	0	1	0	0
DOLPP1	57171	broad.mit.edu	37	9	131847573	131847573	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:131847573T>A	uc004bxc.2	+	4	378	c.350T>A	c.(349-351)TTC>TAC	p.F117Y	DOLPP1_uc004bxd.2_Missense_Mutation_p.F117Y|DOLPP1_uc004bxe.2_RNA|DOLPP1_uc004bxf.2_5'Flank	NM_020438	NP_065171	Q86YN1	DOPP1_HUMAN	dolichyl pyrophosphate phosphatase 1 isoform a	117	Helical; (Potential).				dolichyl diphosphate biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to endoplasmic reticulum membrane	dolichyldiphosphatase activity			skin(1)	1						TCCTTCCTTTTCCTGTATTTA	0.562													7	99					0	0	1	0	0
CRAT	1384	broad.mit.edu	37	9	131857693	131857693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:131857693G>A	uc004bxh.2	-	14	2146	c.1864C>T	c.(1864-1866)CCC>TCC	p.P622S	CRAT_uc004bxg.2_Missense_Mutation_p.P601S|CRAT_uc004bxk.3_Missense_Mutation_p.P601S	NM_000755	NP_000746	P43155	CACP_HUMAN	carnitine acetyltransferase precursor	622					energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA oxidase|transport	endoplasmic reticulum|mitochondrial inner membrane|peroxisomal matrix	carnitine O-acetyltransferase activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)	L-Carnitine(DB00583)	TTGGCCCGGGGGTGGCTCTGC	0.682													4	50					0	0	1	0	0
FNBP1	23048	broad.mit.edu	37	9	132671209	132671209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:132671209C>T	uc004byw.1	-	12	1474	c.1255G>A	c.(1255-1257)GAT>AAT	p.D419N	FNBP1_uc011mbv.1_Missense_Mutation_p.D409N|FNBP1_uc011mbw.1_Missense_Mutation_p.D414N|FNBP1_uc004bza.2_Missense_Mutation_p.D353N|FNBP1_uc004byz.1_Missense_Mutation_p.D390N|FNBP1_uc011mbu.1_Missense_Mutation_p.D47N|FNBP1_uc004byx.1_Missense_Mutation_p.D335N|FNBP1_uc004byy.1_Missense_Mutation_p.D325N	NM_015033	NP_055848	Q96RU3	FNBP1_HUMAN	formin binding protein 1	419	Required for self-association and induction of membrane tubulation.|Interaction with RND2 (By similarity).|REM.				endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|lysosome|plasma membrane	identical protein binding|lipid binding				0		Ovarian(14;0.000536)		GBM - Glioblastoma multiforme(294;0.0378)		TTTAACTCATCGACTTTCTGC	0.338			T	MLL	AML								3	14					0	0	1	0	0
FUBP3	8939	broad.mit.edu	37	9	133499042	133499043	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:133499042_133499043CC>TT	uc004bzr.1	+	11	1027_1028	c.919_920CC>TT	c.(919-921)CCG>TTG	p.P307L	FUBP3_uc010mzd.1_Missense_Mutation_p.P247L|FUBP3_uc004bzs.1_Missense_Mutation_p.P220L	NM_003934	NP_003925	Q96I24	FUBP3_HUMAN	far upstream element (FUSE) binding protein 3	307	KH 3.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|RNA binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000279)		CATGGGCCCTCCGGATCGGTGT	0.535													8	68					0	0	1	0	0
NUP214	8021	broad.mit.edu	37	9	134073013	134073013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:134073013C>T	uc004cag.2	+	29	4243	c.4132C>T	c.(4132-4134)CCG>TCG	p.P1378S	NUP214_uc004cah.2_Missense_Mutation_p.P1368S|NUP214_uc004cai.2_Missense_Mutation_p.P808S|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Missense_Mutation_p.P204S|NUP214_uc011mcf.1_Missense_Mutation_p.P155S|NUP214_uc010mzh.1_5'UTR|NUP214_uc010mzi.1_5'UTR	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1378	Pro/Ser/Thr-rich.|11 X 5 AA approximate repeats.		P -> L (in a breast cancer sample; somatic mutation).		carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding	p.P1378L(1)		breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		TACTGCCCCCCCGGTGTTAGG	0.542			T	DEK|SET|ABL1	AML|T-ALL								4	54					0	0	1	0	0
RAPGEF1	2889	broad.mit.edu	37	9	134459920	134459920	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:134459920G>A	uc004cbc.2	-	20	2869	c.2739C>T	c.(2737-2739)TTC>TTT	p.F913F	RAPGEF1_uc004cbb.2_Silent_p.F931F	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	913	Ras-GEF.				activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		TGATCTTGATGAACTTCAAGA	0.567													14	92					0	0	1	0	0
NTNG2	84628	broad.mit.edu	37	9	135042273	135042273	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:135042273T>A	uc004cbh.2	+	2	831	c.55T>A	c.(55-57)TAT>AAT	p.Y19N		NM_032536	NP_115925	Q96CW9	NTNG2_HUMAN	netrin G2 precursor	19					axonogenesis	anchored to plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(145;1.23e-05)|Epithelial(140;0.000173)		CTCTGGGGACTATGACATCTG	0.627													6	92					0	0	1	0	0
SETX	23064	broad.mit.edu	37	9	135201931	135201931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:135201931G>A	uc004cbk.2	-	10	5237	c.5054C>T	c.(5053-5055)TCC>TTC	p.S1685F	SETX_uc004cbj.2_Missense_Mutation_p.S1304F|SETX_uc010mzt.2_Missense_Mutation_p.S1304F	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	1685					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		TACTGGAGAGGAAGATGGAAA	0.373													5	44					0	0	1	0	0
SETX	23064	broad.mit.edu	37	9	135203699	135203699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:135203699G>A	uc004cbk.2	-	10	3469	c.3286C>T	c.(3286-3288)CAT>TAT	p.H1096Y	SETX_uc004cbj.2_Missense_Mutation_p.H715Y|SETX_uc010mzt.2_Missense_Mutation_p.H715Y	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	1096					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		TCGTCTGGATGATCTTGCCAA	0.358													5	25					0	0	1	0	0
GTF3C4	9329	broad.mit.edu	37	9	135553482	135553482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:135553482C>T	uc010mzv.2	+	2	734	c.476C>T	c.(475-477)CCA>CTA	p.P159L	GTF3C4_uc010mzw.2_RNA	NM_012204	NP_036336	Q9UKN8	TF3C4_HUMAN	general transcription factor IIIC 4	159					transcription initiation from RNA polymerase III promoter	transcription factor TFIIIC complex	DNA binding|enzyme activator activity|histone acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(145;8.15e-07)|Epithelial(140;2.6e-05)		AAGGCTTTACCACCAATGAGA	0.547													8	52					0	0	1	0	0
GFI1B	8328	broad.mit.edu	37	9	135866351	135866351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:135866351C>T	uc004ccg.2	+	7	1058	c.907C>T	c.(907-909)CCC>TCC	p.P303S	GFI1B_uc010mzy.2_Missense_Mutation_p.P257S	NM_004188	NP_004179	Q5VTD9	GFI1B_HUMAN	growth factor independent 1B transcription	303	Mediates interaction with GATA1.|Interaction with ARIH2.				cell proliferation|chromatin modification|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;9.04e-07)|Epithelial(140;1.17e-05)		AGGCTTCAAGCCCTTCAGCTG	0.632													6	59					0	0	1	0	0
CELP	1057	broad.mit.edu	37	9	135961730	135961730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:135961730G>A	uc011mcu.1	+	4	565	c.472G>A	c.(472-474)GAG>AAG	p.E158K		NR_001275				Homo sapiens cDNA FLJ25862 fis, clone CBR01781.												0						CCATAGAGATGAGATCCAGTA	0.597													12	143					0	0	1	0	0
SURF2	6835	broad.mit.edu	37	9	136227982	136227982	+	Silent	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:136227982C>A	uc004cdi.2	+	6	786	c.738C>A	c.(736-738)CCC>CCA	p.P246P		NM_017503	NP_059973	Q15527	SURF2_HUMAN	surfeit 2	246							protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.87e-07)|Epithelial(140;4.02e-06)|all cancers(34;3.71e-05)		ACCGCAAACCCAAGAGCTTCA	0.458													5	153					1	1	1	1	0
C9orf96	169436	broad.mit.edu	37	9	136265581	136265581	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:136265581G>A	uc004cdk.2	+	12	1183	c.1122G>A	c.(1120-1122)ACG>ACA	p.T374T	C9orf96_uc004cdl.2_RNA	NM_153710	NP_714921	Q8NE28	SGK71_HUMAN	hypothetical protein LOC169436	374							ATP binding|protein kinase activity			stomach(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		TGGTGGTCACGACCATGGAGC	0.652													6	56					0	0	1	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136298600	136298600	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:136298600T>A	uc004cdv.3	+	10	1639	c.1195T>A	c.(1195-1197)TCC>ACC	p.S399T	ADAMTS13_uc004cdp.3_Intron|ADAMTS13_uc004cdt.1_Missense_Mutation_p.S399T|ADAMTS13_uc004cdu.1_Missense_Mutation_p.S368T|ADAMTS13_uc004cdw.3_Missense_Mutation_p.S399T|ADAMTS13_uc004cdx.3_Missense_Mutation_p.S368T|ADAMTS13_uc004cdy.1_RNA|ADAMTS13_uc004cdz.3_Missense_Mutation_p.S69T|ADAMTS13_uc004cds.1_Intron|ADAMTS13_uc004cdr.1_RNA	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	399	TSP type-1 1.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		TTGCTCCCGCTCCTGCGGAGG	0.647													4	49					0	0	1	0	0
ADAMTSL2	9719	broad.mit.edu	37	9	136403500	136403500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:136403500G>A	uc011mdl.1	+	4	820	c.263G>A	c.(262-264)AGG>AAG	p.R88K	ADAMTSL2_uc004cei.2_Missense_Mutation_p.R88K	NM_001145320	NP_001138792	Q86TH1	ATL2_HUMAN	ADAMTS-like 2 precursor	88	TSP type-1 1.				negative regulation of transforming growth factor beta receptor signaling pathway	proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;9.31e-08)|Epithelial(140;6.62e-07)|all cancers(34;7.74e-06)		CCCGGGAACAGGACCTGCACG	0.667													18	100					0	0	1	0	0
SARDH	1757	broad.mit.edu	37	9	136573491	136573491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:136573491G>A	uc004cep.3	-	11	1522	c.1388C>T	c.(1387-1389)TCC>TTC	p.S463F	SARDH_uc004ceo.2_Missense_Mutation_p.S463F|SARDH_uc011mdn.1_Missense_Mutation_p.S463F|SARDH_uc011mdo.1_Missense_Mutation_p.S295F	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	463					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		CTTGGCGTAGGACTCATGGCT	0.652													15	73					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137620647	137620647	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:137620647C>T	uc004cfe.2	+	6	1300	c.918C>T	c.(916-918)GTC>GTT	p.V306V		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	306	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CCACAGAGGTCCCCGAGGTCT	0.632													20	85					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137623452	137623452	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:137623452C>T	uc004cfe.2	+	8	1657	c.1275C>T	c.(1273-1275)AGC>AGT	p.S425S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	425	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		accccACCAGCTCCCCGTCGG	0.557													11	107					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137648659	137648659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:137648659C>T	uc004cfe.2	+	17	2258	c.1876C>T	c.(1876-1878)CCC>TCC	p.P626S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	626	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		ACAAACTGGCCCCAAGGTAGG	0.547													7	62					0	0	1	0	0
PAEP	5047	broad.mit.edu	37	9	138457276	138457276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:138457276G>A	uc004cge.1	+	5	486	c.442G>A	c.(442-444)GAT>AAT	p.D148N	PAEP_uc010nba.1_Missense_Mutation_p.D111N|PAEP_uc004cgd.1_Missense_Mutation_p.D148N|PAEP_uc011mdp.1_Missense_Mutation_p.D126N|PAEP_uc004cgg.1_Missense_Mutation_p.D148N|PAEP_uc010nbc.1_Missense_Mutation_p.D148N|PAEP_uc004cgf.1_Missense_Mutation_p.D148N	NM_001018049	NP_001018059	P09466	PAEP_HUMAN	glycodelin precursor	148					multicellular organismal development	extracellular region	binding|transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.39e-07)|Epithelial(140;1.11e-06)|all cancers(34;2.04e-05)		GGTGGAGGACGATGAGATCAT	0.602													5	35					0	0	1	0	0
SOHLH1	402381	broad.mit.edu	37	9	138589431	138589431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:138589431C>T	uc004cgl.2	-	4	449	c.388G>A	c.(388-390)GAT>AAT	p.D130N	SOHLH1_uc010nbe.2_Missense_Mutation_p.D130N	NM_001012415	NP_001012415	Q5JUK2	SOLH1_HUMAN	spermatogenesis and oogenesis specific basic	130					cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			breast(1)|central_nervous_system(1)	2		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.66e-07)|Epithelial(140;1.11e-06)|all cancers(34;6.45e-05)		TGTAAAACATCCTCCTGCAAC	0.507													4	35					0	0	1	0	0
KCNT1	57582	broad.mit.edu	37	9	138671281	138671281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:138671281G>A	uc011mdq.1	+	24	2880	c.2806G>A	c.(2806-2808)GAC>AAC	p.D936N	KCNT1_uc011mdr.1_Missense_Mutation_p.D763N|KCNT1_uc010nbf.2_Missense_Mutation_p.D891N|KCNT1_uc004cgo.1_Missense_Mutation_p.D685N	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	936						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		CCGCGCCAAGGACAGCTACTC	0.617													11	87					0	0	1	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138713690	138713690	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:138713690G>A	uc004cgr.3	-	11	2817	c.2817C>T	c.(2815-2817)TAC>TAT	p.Y939Y	CAMSAP1_uc004cgq.3_Silent_p.Y829Y|CAMSAP1_uc010nbg.2_Silent_p.Y661Y	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	939						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		TGTGCTGAGAGTACTCCTTTG	0.597													14	154					0	0	1	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138713957	138713957	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:138713957G>A	uc004cgr.3	-	11	2550	c.2550C>T	c.(2548-2550)GCC>GCT	p.A850A	CAMSAP1_uc004cgq.3_Silent_p.A740A|CAMSAP1_uc010nbg.2_Silent_p.A572A	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	850						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		TCGTCAGAGGGGCTGGGCAGC	0.617													4	17					0	0	1	0	0
QSOX2	169714	broad.mit.edu	37	9	139110984	139110984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:139110984G>A	uc010nbi.2	-	7	886	c.848C>T	c.(847-849)TCG>TTG	p.S283L		NM_181701	NP_859052	Q6ZRP7	QSOX2_HUMAN	quiescin Q6 sulfhydryl oxidase 2 precursor	283					cell redox homeostasis	extracellular region|integral to membrane|nuclear membrane|plasma membrane	thiol oxidase activity			ovary(1)	1		Myeloproliferative disorder(178;0.0511)		Epithelial(140;7.78e-08)|OV - Ovarian serous cystadenocarcinoma(145;1.55e-07)		CAAATAAGACGAAAAGAAGGC	0.468													7	63					0	0	1	0	0
SNAPC4	6621	broad.mit.edu	37	9	139283019	139283019	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:139283019G>A	uc004chh.2	-	10	1009	c.1000C>T	c.(1000-1002)CTG>TTG	p.L334L		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	334	H-T-H motif (By similarity).|HTH myb-type 1.				snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		AATTTCTGCAGGCACTGGAAG	0.592													12	53					0	0	1	0	0
SNAPC4	6621	broad.mit.edu	37	9	139292813	139292813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:139292813G>A	uc004chh.2	-	1	77	c.68C>T	c.(67-69)CCC>CTC	p.P23L		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	23					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		CGAGGAGCCGGGATCCAAAAT	0.532													14	83					0	0	1	0	0
SEC16A	9919	broad.mit.edu	37	9	139341692	139341692	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:139341692G>A	uc004chx.2	-	27	6993	c.6684C>T	c.(6682-6684)TTC>TTT	p.F2228F	SEC16A_uc004chp.2_5'Flank|SEC16A_uc004chq.2_Silent_p.F69F|SEC16A_uc011mea.1_Silent_p.F69F|SEC16A_uc004chr.2_Silent_p.F234F|SEC16A_uc004chs.2_Silent_p.F68F|SEC16A_uc004cht.2_Silent_p.F259F|SEC16A_uc004chu.2_Silent_p.F413F|SEC16A_uc004chv.3_Silent_p.F1618F|SEC16A_uc004chw.2_Silent_p.F2228F|SEC16A_uc010nbn.2_Silent_p.F2228F	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	2050	Required for interaction with SEC23A.|Pro-rich.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		GGGTTGGCACGAACAAGTTAG	0.597													5	9					0	0	1	0	0
NOTCH1	4851	broad.mit.edu	37	9	139391459	139391459	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:139391459G>A	uc004chz.2	-	34	6732	c.6732C>T	c.(6730-6732)ATC>ATT	p.I2244I		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	2244	Cytoplasmic (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		TCAGGTGCCCGATGCCCAGGT	0.716			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			7	21					0	0	1	0	0
LCN12	286256	broad.mit.edu	37	9	139847361	139847361	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:139847361C>T	uc004ckb.2	+	2	144	c.132C>T	c.(130-132)TTC>TTT	p.F44F	LCN12_uc004ckc.2_Silent_p.F44F	NM_178536	NP_848631	Q6JVE5	LCN12_HUMAN	lipocalcin 12 precursor	44					lipid metabolic process	extracellular region	binding|transporter activity				0	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.19)	OV - Ovarian serous cystadenocarcinoma(145;7.8e-06)|Epithelial(140;0.000106)		GGGAATGGTTCGTCCTGGGCC	0.672													21	172					0	0	1	0	0
MAN1B1	11253	broad.mit.edu	37	9	139995588	139995588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:139995588C>T	uc004cld.2	+	7	1083	c.1048C>T	c.(1048-1050)CTC>TTC	p.L350F	MAN1B1_uc004clc.2_Missense_Mutation_p.L251F|MAN1B1_uc011meo.1_Missense_Mutation_p.L251F|MAN1B1_uc011mep.1_Missense_Mutation_p.L350F|MAN1B1_uc010ncc.2_RNA|MAN1B1_uc004clf.1_5'Flank	NM_016219	NP_057303	Q9UKM7	MA1B1_HUMAN	alpha 1,2-mannosidase	350	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|endoplasmic reticulum quality control compartment|integral to membrane	alpha-mannosidase activity|calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(1)|central_nervous_system(1)	2	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;3.08e-05)|Epithelial(140;0.000513)		TGGGGACAGCCTCTTCCTGAG	0.552													5	58					0	0	1	0	0
GRIN1	2902	broad.mit.edu	37	9	140034155	140034155	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:140034155C>T	uc004clk.2	+	1	547	c.217C>T	c.(217-219)CAG>TAG	p.Q73*	GRIN1_uc004cli.1_5'UTR|GRIN1_uc004clj.1_Nonsense_Mutation_p.Q70*|GRIN1_uc004cll.2_Nonsense_Mutation_p.Q73*|GRIN1_uc004clm.2_Nonsense_Mutation_p.Q73*|GRIN1_uc004cln.2_Nonsense_Mutation_p.Q70*|GRIN1_uc004clo.2_Nonsense_Mutation_p.Q70*	NM_007327	NP_015566	Q05586	NMDZ1_HUMAN	NMDA receptor 1 isoform NR1-3 precursor	73	Extracellular (Potential).				ionotropic glutamate receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|regulation of excitatory postsynaptic membrane potential|response to ethanol|visual learning	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane|synaptic vesicle|synaptosome	calcium ion binding|calmodulin binding|extracellular-glutamate-gated ion channel activity|glutamate binding|glycine binding			skin(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;6.87e-05)|Epithelial(140;0.00095)	L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	CAACGCCATCCAGATGGCTCT	0.647													5	64					0	0	1	0	0
NDOR1	27158	broad.mit.edu	37	9	140108292	140108292	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:140108292C>T	uc004clw.2	+	4	483	c.372C>T	c.(370-372)CTC>CTT	p.L124L	NDOR1_uc004clx.2_Silent_p.L124L|NDOR1_uc011mes.1_Silent_p.L124L|NDOR1_uc004cly.2_Silent_p.L124L	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	124	FMN (By similarity).|Flavodoxin-like.				cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		GCAGCGCCCTCCTGCCCGTGT	0.677													5	26					0	0	1	0	0
EHMT1	79813	broad.mit.edu	37	9	140637883	140637883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:140637883C>T	uc011mfc.1	+	5	921	c.884C>T	c.(883-885)ACC>ATC	p.T295I	EHMT1_uc004coa.2_Missense_Mutation_p.T295I|EHMT1_uc004cob.1_Missense_Mutation_p.T264I|EHMT1_uc010ncn.1_RNA	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	295					DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		AGAATGGGAACCTATAGCCTG	0.294													4	18					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	140846826	140846826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:140846826C>T	uc004cog.2	+	7	1212	c.1067C>T	c.(1066-1068)TCG>TTG	p.S356L		NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	356	Helical; Name=S6 of repeat I; (Potential).|I.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GGCGTGCTCTCGGGGTGAGAG	0.612													4	42					0	0	1	0	0
PPP2R3B	28227	broad.mit.edu	37	X	295200	295200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:295200G>A	uc004cpg.2	-	13	1831	c.1630C>T	c.(1630-1632)CCG>TCG	p.P544S	PPP2R3B_uc004cpf.2_Missense_Mutation_p.P145S	NM_013239	NP_037371	Q9Y5P8	P2R3B_HUMAN	protein phosphatase 2, regulatory subunit B'',	544					cell cycle arrest|protein dephosphorylation	nucleus|protein phosphatase type 2A complex	calcium ion binding|protein phosphatase type 2A regulator activity|protein serine/threonine phosphatase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TGGGCCAGCGGGGAGCGCAGC	0.701													5	30					0	0	1	0	0
SHOX	6473	broad.mit.edu	37	X	595387	595387	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:595387G>A	uc004cph.1	+	3	1003	c.312G>A	c.(310-312)GTG>GTA	p.V104V	SHOX_uc004cpi.2_Silent_p.V104V	NM_000451	NP_000442	O15266	SHOX_HUMAN	short stature homeobox isoform SHOXa	104					skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCGAGGACGTGAAGTCGGAGG	0.622													7	50					0	0	1	0	0
CSF2RA	1438	broad.mit.edu	37	X	1404725	1404725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:1404725C>T	uc010nct.2	+	5	453	c.131C>T	c.(130-132)ACG>ATG	p.T44M	CSF2RA_uc011mhb.1_Missense_Mutation_p.T44M|CSF2RA_uc004cpq.2_Missense_Mutation_p.T44M|CSF2RA_uc004cpn.2_Missense_Mutation_p.T44M|CSF2RA_uc004cpo.2_Missense_Mutation_p.T44M|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Intron|CSF2RA_uc004cpp.2_Missense_Mutation_p.T44M|CSF2RA_uc010ncv.2_Missense_Mutation_p.T44M|CSF2RA_uc004cpr.2_Missense_Mutation_p.T44M	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	44	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	GACTCCAGGACGATGAATTTA	0.448													11	178					0	0	1	0	0
CSF2RA	1438	broad.mit.edu	37	X	1404801	1404801	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:1404801C>T	uc010nct.2	+	5	529	c.207C>T	c.(205-207)GTC>GTT	p.V69V	CSF2RA_uc011mhb.1_Silent_p.V69V|CSF2RA_uc004cpq.2_Silent_p.V69V|CSF2RA_uc004cpn.2_Silent_p.V69V|CSF2RA_uc004cpo.2_Silent_p.V69V|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Intron|CSF2RA_uc004cpp.2_Silent_p.V69V|CSF2RA_uc010ncv.2_Silent_p.V69V|CSF2RA_uc004cpr.2_Silent_p.V69V	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	69	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	AGAACAGAGTCGTGGAACCCA	0.423													12	222					0	0	1	0	0
IL3RA	3563	broad.mit.edu	37	X	1501325	1501325	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:1501325G>A	uc004cps.2	+	12	1453	c.1104G>A	c.(1102-1104)CTG>CTA	p.L368L	IL3RA_uc011mhd.1_Silent_p.L290L	NM_002183	NP_002174	P26951	IL3RA_HUMAN	interleukin 3 receptor, alpha precursor	368	Cytoplasmic (Potential).					integral to membrane|plasma membrane	interleukin-3 receptor activity			skin(2)|lung(1)	3		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	AGGAGTGTCTGGTGACTGAAG	0.637													17	207					0	0	1	0	0
P2RY8	286530	broad.mit.edu	37	X	1584396	1584396	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:1584396G>A	uc004cpz.2	-	2	1304	c.1056C>T	c.(1054-1056)CTC>CTT	p.L352L		NM_178129	NP_835230	Q86VZ1	P2RY8_HUMAN	G-protein coupled purinergic receptor P2Y8	352	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(5)	5		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCTGCCTCTGGAGGCCGGGCC	0.711			T	CRLF2	B-ALL|Downs associated ALL								8	139					0	0	1	0	0
P2RY8	286530	broad.mit.edu	37	X	1585248	1585248	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:1585248C>T	uc004cpz.2	-	2	452	c.204G>A	c.(202-204)ACG>ACA	p.T68T		NM_178129	NP_835230	Q86VZ1	P2RY8_HUMAN	G-protein coupled purinergic receptor P2Y8	68	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(5)	5		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCATCAGGTCCGTGACGCTCA	0.602			T	CRLF2	B-ALL|Downs associated ALL								5	73					0	0	1	0	0
ZBED1	9189	broad.mit.edu	37	X	2408527	2408527	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:2408527G>A	uc004cqg.2	-	2	435	c.234C>T	c.(232-234)TTC>TTT	p.F78F	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Silent_p.F78F	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	78	BED-type.					nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TGCTCTTGACGAACTCGCAGA	0.622													8	110					0	0	1	0	0
ARSD	414	broad.mit.edu	37	X	2838653	2838653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:2838653G>A	uc004cqy.2	-	4	504	c.428C>T	c.(427-429)ACC>ATC	p.T143I	ARSD_uc004cqz.1_Intron|ARSD_uc004cra.1_Missense_Mutation_p.T143I|ARSD_uc004crb.3_Missense_Mutation_p.T143I	NM_001669	NP_001660	P51689	ARSD_HUMAN	arylsulfatase D isoform a precursor	143						lysosome	arylsulfatase activity|metal ion binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TATGAGGCCGGTTGCATAGCC	0.448													13	28					0	0	1	0	0
ARSE	415	broad.mit.edu	37	X	2867671	2867672	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:2867671_2867672GG>AA	uc004crc.3	-	6	777_778	c.527_528CC>TT	c.(526-528)TCC>TTT	p.S176F	ARSE_uc011mhi.1_Missense_Mutation_p.S122F|ARSE_uc011mhh.1_Missense_Mutation_p.S201F	NM_000047	NP_000038	P51690	ARSE_HUMAN	arylsulfatase E precursor	176					skeletal system development	Golgi stack	arylsulfatase activity|metal ion binding			ovary(1)|central_nervous_system(1)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CACCCATCAAGGAGAAAGGCAT	0.515													5	14					0	0	1	0	0
ARSF	416	broad.mit.edu	37	X	3021832	3021832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:3021832G>A	uc004cre.1	+	9	1353	c.1132G>A	c.(1132-1134)GGA>AGA	p.G378R	ARSF_uc004crf.1_Missense_Mutation_p.G378R	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	378						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CTGGGAAGGTGGAATCCGCGT	0.423													9	11					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3228060	3228060	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:3228060C>T	uc004crg.3	-	7	8341	c.8184G>A	c.(8182-8184)GTG>GTA	p.V2728V		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2728						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GATAGGCGATCACAATCACGG	0.607													4	20					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3236010	3236010	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:3236010C>T	uc004crg.3	-	6	5869	c.5712G>A	c.(5710-5712)CGG>CGA	p.R1904R		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1904	Ig-like C2-type 3.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GAACCTCAAACCGTTGTATCC	0.473													4	20					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3238772	3238772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:3238772G>A	uc004crg.3	-	5	5111	c.4954C>T	c.(4954-4956)CCT>TCT	p.P1652S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1652						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GCCCCAGAAGGATATGTAGTT	0.453													9	95					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3241724	3241724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:3241724C>T	uc004crg.3	-	5	2159	c.2002G>A	c.(2002-2004)GTG>ATG	p.V668M		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	668	Ig-like C2-type 2.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TTCTTGGTCACTGTGATTCCC	0.522													6	29					0	0	1	0	0
FRMPD4	9758	broad.mit.edu	37	X	12735936	12735936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:12735936G>A	uc004cuz.1	+	16	3497	c.2991G>A	c.(2989-2991)ATG>ATA	p.M997I	FRMPD4_uc011mij.1_Missense_Mutation_p.M989I	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	997					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						ACATGGAGATGGAGCCTGAAA	0.532													17	33					0	0	1	0	0
FRMPD4	9758	broad.mit.edu	37	X	12735962	12735962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:12735962C>T	uc004cuz.1	+	16	3523	c.3017C>T	c.(3016-3018)TCG>TTG	p.S1006L	FRMPD4_uc011mij.1_Missense_Mutation_p.S998L	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1006					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GAGACTAAGTCGGTCACTGAC	0.537													8	46					0	0	1	0	0
PRPS2	5634	broad.mit.edu	37	X	12838920	12838920	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:12838920C>T	uc004cvb.2	+	6	986	c.862C>T	c.(862-864)CAG>TAG	p.Q288*	PRPS2_uc004cva.2_Nonsense_Mutation_p.Q291*|PRPS2_uc010nec.2_Nonsense_Mutation_p.Q166*	NM_002765	NP_002756	P11908	PRPS2_HUMAN	phosphoribosyl pyrophosphate synthetase 2	288					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity				0						CACCAAGATTCAGGTACTGTC	0.448													5	17					0	0	1	0	0
TLR7	51284	broad.mit.edu	37	X	12904461	12904461	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:12904461C>T	uc004cvc.2	+	3	973	c.834C>T	c.(832-834)CCC>CCT	p.P278P		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	278	Extracellular (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	ATAATTCTCCCCTACAGATCC	0.398													4	32					0	0	1	0	0
EGFL6	25975	broad.mit.edu	37	X	13651119	13651119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:13651119G>A	uc004cvi.2	+	12	1807	c.1567G>A	c.(1567-1569)GAA>AAA	p.E523K	EGFL6_uc004cvj.2_Missense_Mutation_p.E524K	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	523	MAM.				cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						TTTTGAAGCAGAACGTGGCAA	0.373													14	37					0	0	1	0	0
OFD1	8481	broad.mit.edu	37	X	13762615	13762615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:13762615C>T	uc004cvp.3	+	6	853	c.494C>T	c.(493-495)TCG>TTG	p.S165L	OFD1_uc004cvr.3_5'UTR|OFD1_uc011mil.1_5'UTR|OFD1_uc004cvq.3_Missense_Mutation_p.S25L|OFD1_uc010nen.2_Missense_Mutation_p.S164L|OFD1_uc004cvs.3_RNA|OFD1_uc004cvu.3_Missense_Mutation_p.S164L|OFD1_uc004cvv.3_Missense_Mutation_p.S164L|OFD1_uc010neo.1_5'Flank	NM_003611	NP_003602	O75665	OFD1_HUMAN	oral-facial-digital syndrome 1	165					cilium movement involved in determination of left/right asymmetry|G2/M transition of mitotic cell cycle	centriole|cilium|cytosol|microtubule basal body|nuclear membrane	alpha-tubulin binding|gamma-tubulin binding				0						CAGACAAGTTCGACATTTAAC	0.299													3	10					0	0	1	0	0
GLRA2	2742	broad.mit.edu	37	X	14748447	14748447	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:14748447C>T	uc010nep.2	+	10	1531	c.1199C>T	c.(1198-1200)CCG>CTG	p.P400L	GLRA2_uc010neq.2_Missense_Mutation_p.P400L|GLRA2_uc004cwe.3_Missense_Mutation_p.P400L|GLRA2_uc011mio.1_Missense_Mutation_p.P311L|GLRA2_uc011mip.1_Missense_Mutation_p.P378L	NM_001118885	NP_001112357	P23416	GLRA2_HUMAN	glycine receptor, alpha 2 isoform A	400	Cytoplasmic (Probable).				neuropeptide signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(1)|lung(1)	2	Hepatocellular(33;0.128)				Ethanol(DB00898)|Glycine(DB00145)	CTCCCACAACCGCCAAAAGAT	0.488													4	20					0	0	1	0	0
ACE2	59272	broad.mit.edu	37	X	15618904	15618904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:15618904G>A	uc004cxa.1	-	1	299	c.131C>T	c.(130-132)TCA>TTA	p.S44L	ACE2_uc004cxb.2_Missense_Mutation_p.S44L	NM_021804	NP_068576	Q9BYF1	ACE2_HUMAN	angiotensin I converting enzyme 2 precursor	44	Extracellular (Potential).				angiotensin-mediated drinking behavior|proteolysis|receptor biosynthetic process|regulation of cell proliferation|virion attachment, binding of host cell surface receptor	cell surface|extracellular space|integral to membrane|membrane raft|plasma membrane	carboxypeptidase activity|glycoprotein binding|metallopeptidase activity|peptidyl-dipeptidase activity|viral receptor activity|zinc ion binding			ovary(3)	3	Hepatocellular(33;0.183)				Moexipril(DB00691)	AGAAGCAAGTGAACTTTGATA	0.413													9	36					0	0	1	0	0
GRPR	2925	broad.mit.edu	37	X	16142262	16142262	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:16142262C>T	uc004cxj.2	+	1	839	c.186C>T	c.(184-186)ATC>ATT	p.I62I		NM_005314	NP_005305	P30550	GRPR_HUMAN	gastrin-releasing peptide receptor	62	Helical; Name=1; (Potential).				cell proliferation	integral to plasma membrane	bombesin receptor activity			ovary(3)|lung(1)	4	Hepatocellular(33;0.183)					TCACTTTGATCAAGATCTTCT	0.493											OREG0019682	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	22					0	0	1	0	0
CTPS2	56474	broad.mit.edu	37	X	16608950	16608950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:16608950G>A	uc004cxk.2	-	18	2471	c.1727C>T	c.(1726-1728)TCA>TTA	p.S576L	CTPS2_uc004cxl.2_Missense_Mutation_p.S576L|CTPS2_uc004cxm.2_Missense_Mutation_p.S576L	NM_001144002	NP_001137474	Q9NRF8	PYRG2_HUMAN	cytidine triphosphate synthase II	576					glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine nucleotide biosynthetic process	cytosol	ATP binding|CTP synthase activity			ovary(1)	1	Hepatocellular(33;0.0997)					CCTTGGCTCTGAAAAGCTGTC	0.378													5	54					0	0	1	0	0
CTPS2	56474	broad.mit.edu	37	X	16688711	16688711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:16688711G>A	uc004cxk.2	-	11	1925	c.1181C>T	c.(1180-1182)CCT>CTT	p.P394L	CTPS2_uc004cxl.2_Missense_Mutation_p.P394L|CTPS2_uc004cxm.2_Missense_Mutation_p.P394L	NM_001144002	NP_001137474	Q9NRF8	PYRG2_HUMAN	cytidine triphosphate synthase II	394	Glutamine amidotransferase type-1.				glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine nucleotide biosynthetic process	cytosol	ATP binding|CTP synthase activity			ovary(1)	1	Hepatocellular(33;0.0997)					ACCCAGAAAAGGAATCTTCTT	0.398													22	67					0	0	1	0	0
NHS	4810	broad.mit.edu	37	X	17744272	17744272	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:17744272C>T	uc004cxx.2	+	6	2321	c.1983C>T	c.(1981-1983)TTC>TTT	p.F661F	NHS_uc011mix.1_Silent_p.F682F|NHS_uc004cxy.2_Silent_p.F505F|NHS_uc004cxz.2_Silent_p.F484F|NHS_uc004cya.2_Silent_p.F384F	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	661						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					CCAGTGTTTTCGTGACAGAGC	0.512													16	60					0	0	1	0	0
RAI2	10742	broad.mit.edu	37	X	17819666	17819666	+	Silent	SNP	G	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:17819666G>C	uc004cyf.2	-	3	1035	c.465C>G	c.(463-465)CTC>CTG	p.L155L	RAI2_uc004cyg.2_Silent_p.L155L|RAI2_uc010nfa.2_Silent_p.L155L|RAI2_uc004cyh.3_Silent_p.L155L|RAI2_uc011miy.1_Silent_p.L105L	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	155					embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					CTCCCTGGAAGAGGTTGTTGT	0.647													20	37					0	0	1	0	0
BEND2	139105	broad.mit.edu	37	X	18221654	18221654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:18221654C>T	uc004cyj.3	-	5	1028	c.874G>A	c.(874-876)GCC>ACC	p.A292T	BEND2_uc010nfb.2_Missense_Mutation_p.A292T	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	292										ovary(3)|kidney(1)|central_nervous_system(1)	5						GATGACAAGGCTCTACCTGGG	0.418													16	26					0	0	1	0	0
CDKL5	6792	broad.mit.edu	37	X	18626971	18626971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:18626971C>T	uc004cym.2	+	13	2238	c.1985C>T	c.(1984-1986)TCT>TTT	p.S662F	CDKL5_uc004cyn.2_Missense_Mutation_p.S662F	NM_003159	NP_003150	O76039	CDKL5_HUMAN	cyclin-dependent kinase-like 5	662					neuron migration|positive regulation of axon extension|positive regulation of dendrite morphogenesis|positive regulation of Rac GTPase activity|protein autophosphorylation	dendrite cytoplasm|dendritic growth cone|nucleus	ATP binding|cyclin-dependent protein kinase activity|Rac GTPase binding			ovary(2)|large_intestine(1)|stomach(1)|central_nervous_system(1)|skin(1)	6	Hepatocellular(33;0.183)					GTGGCAAGATCTTCGGTCAAA	0.438													5	19					0	0	1	0	0
MAP3K15	389840	broad.mit.edu	37	X	19410591	19410591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:19410591C>T	uc004czk.1	-	18	2257	c.620G>A	c.(619-621)GGA>GAA	p.G207E	MAP3K15_uc004czj.1_Missense_Mutation_p.G167E	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	732	Protein kinase.						ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					AGAAAGGCTTCCTAGAGACAG	0.423													9	33					0	0	1	0	0
YY2	404281	broad.mit.edu	37	X	21871530	21871530	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:21871530C>T	uc010nfq.2	+	5	776	c.579C>T	c.(577-579)CTC>CTT	p.L193L	MBTPS2_uc004dae.2_Silent_p.L193L|MBTPS2_uc010nfr.2_5'UTR|MBTPS2_uc004dab.2_Silent_p.L193L	NM_206923	NP_996806	O15391	TYY2_HUMAN	YY2 transcription factor	Error:Variant_position_missing_in_O15391_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|plasma membrane	DNA binding|zinc ion binding			breast(1)|skin(1)	2						GGATTTTTCTCTTCATTATTT	0.333													5	35					0	0	1	0	0
ZNF645	158506	broad.mit.edu	37	X	22291289	22291289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:22291289G>A	uc004dai.1	+	1	230	c.181G>A	c.(181-183)GAT>AAT	p.D61N		NM_152577	NP_689790	Q8N7E2	ZN645_HUMAN	zinc finger protein 645	61	RING-type.					intracellular	zinc ion binding			lung(1)|pancreas(1)	2						TGACAAATGTGATTTGCCTAT	0.348													4	19					0	0	1	0	0
DDX53	168400	broad.mit.edu	37	X	23018477	23018477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:23018477G>A	uc004daj.2	+	1	391	c.303G>A	c.(301-303)ATG>ATA	p.M101I		NM_182699	NP_874358	Q86TM3	DDX53_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	101	KH.					nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			large_intestine(1)|ovary(1)|kidney(1)	3						ATAGGGAAATGAAAGCAAAGG	0.368													4	32					0	0	1	0	0
KLHL15	80311	broad.mit.edu	37	X	24006308	24006308	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:24006308G>A	uc004dba.3	-	4	1801	c.1545C>T	c.(1543-1545)TAC>TAT	p.Y515Y		NM_030624	NP_085127	Q96M94	KLH15_HUMAN	kelch-like 15	515	Kelch 4.									ovary(1)|breast(1)	2						TCTCTGGGTTGTATACTTCTG	0.468													16	59					0	0	1	0	0
FAM48B2	170067	broad.mit.edu	37	X	24331359	24331359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:24331359C>T	uc011mjw.1	-	1	74	c.74G>A	c.(73-75)AGA>AAA	p.R25K		NM_001136233	NP_001129705	P0C7V6	F48B2_HUMAN	family with sequence similarity 48, member B2	25											0						GTATCTCCTTCTAGGACGTCT	0.443													8	53					0	0	1	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212392	26212392	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:26212392C>T	uc004dbr.2	+	2	578	c.429C>T	c.(427-429)TCC>TCT	p.S143S	MAGEB6_uc010ngc.1_5'UTR	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	143	Ser-rich.									ovary(3)	3						ATGATGTCTCCGTTCCTCAGG	0.527													7	23					0	0	1	0	0
MAGEB10	139422	broad.mit.edu	37	X	27840332	27840332	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:27840332C>T	uc004dbw.2	+	3	1136	c.909C>T	c.(907-909)TTC>TTT	p.F303F		NM_182506	NP_872312	Q96LZ2	MAGBA_HUMAN	melanoma antigen family B, 10	303	MAGE.									lung(1)|breast(1)|central_nervous_system(1)	3						CCAGTGAATTCTCAAACTGGT	0.498													3	10					0	0	1	0	0
MAGEB2	4113	broad.mit.edu	37	X	30237172	30237172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:30237172G>A	uc004dbz.2	+	2	578	c.475G>A	c.(475-477)GGC>AGC	p.G159S		NM_002364	NP_002355	O15479	MAGB2_HUMAN	melanoma antigen family B, 2	159	MAGE.						protein binding			ovary(1)	1						AGCCTCTGAGGGCCTCAGTGT	0.458													3	10					0	0	1	0	0
CXorf21	80231	broad.mit.edu	37	X	30578107	30578107	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:30578107C>T	uc004dcg.1	-	3	642	c.366G>A	c.(364-366)AAG>AAA	p.K122K		NM_025159	NP_079435	Q9HAI6	CX021_HUMAN	hypothetical protein LOC80231	122										ovary(1)	1						CATTATAATTCTTGCAAATAC	0.428													10	28					0	0	1	0	0
DMD	1756	broad.mit.edu	37	X	32834595	32834595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:32834595G>A	uc004dda.1	-	6	764	c.520C>T	c.(520-522)CAT>TAT	p.H174Y	DMD_uc004dcz.2_Missense_Mutation_p.H51Y|DMD_uc004dcy.1_Missense_Mutation_p.H170Y|DMD_uc004ddb.1_Missense_Mutation_p.H166Y|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_Missense_Mutation_p.H166Y|DMD_uc010ngp.1_Missense_Mutation_p.H51Y|DMD_uc010ngq.1_Intron|DMD_uc010ngr.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	174	CH 2.|Actin-binding.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				CTATGACTATGGATGAGAGCA	0.408													5	23					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34148640	34148640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:34148640C>T	uc004ddg.2	-	1	1789	c.1756G>A	c.(1756-1758)GAA>AAA	p.E586K		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	586										ovary(4)|central_nervous_system(1)	5						GGTGTATCTTCCTGAAGCAGT	0.493													4	31					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34150303	34150303	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:34150303C>T	uc004ddg.2	-	1	126	c.93G>A	c.(91-93)GCG>GCA	p.A31A		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	31										ovary(4)|central_nervous_system(1)	5						GCTTGCACTTCGCGAAGCACT	0.617													10	24					0	0	1	0	0
CXorf59	286464	broad.mit.edu	37	X	36091478	36091478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:36091478G>A	uc004ddk.1	+	4	599	c.413G>A	c.(412-414)AGA>AAA	p.R138K		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	138						integral to membrane				central_nervous_system(1)	1						GAGACTATAAGAAGGTGAGAG	0.353													4	16					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37027702	37027702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:37027702C>T	uc004ddl.1	+	1	1233	c.1219C>T	c.(1219-1221)CCC>TCC	p.P407S		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	407										ovary(3)	3						CCCGGAGCCTCCCAAGACTCG	0.607													9	26					0	0	1	0	0
XK	7504	broad.mit.edu	37	X	37587525	37587525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:37587525C>T	uc004ddq.2	+	3	1227	c.1145C>T	c.(1144-1146)TCC>TTC	p.S382F		NM_021083	NP_066569	P51811	XK_HUMAN	membrane transport protein XK	382	Cytoplasmic (Potential).				amino acid transport	integral to membrane	protein binding|transporter activity				0		all_lung(315;0.175)				CTCTTTTCTTCCAGTGTTTCT	0.488													3	9					0	0	1	0	0
SRPX	8406	broad.mit.edu	37	X	38033466	38033466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:38033466G>A	uc004ddy.1	-	3	382	c.296C>T	c.(295-297)TCC>TTC	p.S99F	SRPX_uc004ddz.1_Missense_Mutation_p.S79F|SRPX_uc011mkh.1_Missense_Mutation_p.S99F|SRPX_uc011mki.1_Missense_Mutation_p.S99F	NM_006307	NP_006298	P78539	SRPX_HUMAN	sushi-repeat-containing protein, X-linked	99	Sushi 1.				cell adhesion	cell surface|membrane					0						GATCAGTAGGGAAGAGCCATG	0.552													5	32					0	0	1	0	0
USP9X	8239	broad.mit.edu	37	X	41029282	41029282	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:41029282C>T	uc004dfb.2	+	19	3304	c.2671C>T	c.(2671-2673)CGA>TGA	p.R891*	USP9X_uc004dfc.2_Nonsense_Mutation_p.R891*	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	891					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						TTTTGTAGTTCGATTTCCAAA	0.408													15	37					0	0	1	0	0
USP9X	8239	broad.mit.edu	37	X	41055511	41055511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:41055511C>T	uc004dfb.2	+	27	4618	c.3985C>T	c.(3985-3987)CGT>TGT	p.R1329C	USP9X_uc004dfc.2_Missense_Mutation_p.R1329C	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	1329					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						CAGAACTGTTCGTCAGGTGGC	0.398													12	13					0	0	1	0	0
CASK	8573	broad.mit.edu	37	X	41414861	41414861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:41414861C>T	uc004dfl.3	-	20	1880	c.1834G>A	c.(1834-1836)GGA>AGA	p.G612R	CASK_uc004dfj.3_Missense_Mutation_p.G152R|CASK_uc004dfk.3_Missense_Mutation_p.G427R|CASK_uc004dfm.3_Missense_Mutation_p.G589R|CASK_uc004dfn.3_Missense_Mutation_p.G583R	NM_003688	NP_003679	O14936	CSKP_HUMAN	calcium/calmodulin-dependent serine protein	612					cell adhesion	actin cytoskeleton|cytoplasm|nucleus|plasma membrane	ATP binding|calmodulin binding|guanylate kinase activity|protein serine/threonine kinase activity			ovary(3)|lung(2)|stomach(1)	6						ACCTGTCGTCCTTTTGGTTGG	0.358													4	4					0	0	1	0	0
DUSP21	63904	broad.mit.edu	37	X	44703567	44703567	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:44703567C>T	uc004dgd.2	+	1	319	c.189C>T	c.(187-189)TTC>TTT	p.F63F		NM_022076	NP_071359	Q9H596	DUS21_HUMAN	dual specificity phosphatase 21	63	Tyrosine-protein phosphatase.|Sufficient for mitochondrial localization (By similarity).					cytoplasm|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			large_intestine(1)|lung(1)	2						ACGTATTCTTCGAGGGCATTC	0.502													8	58					0	0	1	0	0
PHF16	9767	broad.mit.edu	37	X	46857534	46857534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:46857534G>A	uc004dgx.2	+	4	190	c.139G>A	c.(139-141)GAC>AAC	p.D47N	PHF16_uc004dgy.2_Missense_Mutation_p.D47N	NM_001077445	NP_001070913	Q92613	JADE3_HUMAN	PHD finger protein 16	47					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0						ATTCCGGAAGGACCTCATCAG	0.408													13	33					0	0	1	0	0
USP11	8237	broad.mit.edu	37	X	47104261	47104261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:47104261C>T	uc004dhp.2	+	15	2153	c.2153C>T	c.(2152-2154)ACC>ATC	p.T718I	USP11_uc004dhq.2_Missense_Mutation_p.T444I	NM_004651	NP_004642	P51784	UBP11_HUMAN	ubiquitin specific peptidase 11	718					protein deubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)|lung(1)|central_nervous_system(1)	3						CAGCTGTTCACCCTGCAGACG	0.607													7	16					0	0	1	0	0
SSX6	280657	broad.mit.edu	37	X	47969866	47969866	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:47969866G>A	uc004dix.1	+	3	192	c.70_splice	c.e3-1	p.A24_splice	SSX6_uc011mlv.1_Splice_Site_p.A24_splice	NM_173357	NP_775493			SubName: Full=Putative uncharacterized protein SSX1;												0						TTTTTTCCTAGGCCTTCGATG	0.443													5	26					0	0	1	0	0
SSX1	6756	broad.mit.edu	37	X	48125808	48125808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:48125808G>A	uc004djb.1	+	7	644	c.553G>A	c.(553-555)GAA>AAA	p.E185K		NM_005635	NP_005626	Q16384	SSX1_HUMAN	synovial sarcoma, X breakpoint 1	185					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|transcription corepressor activity		SS18/SSX1(1169)	soft_tissue(1169)	1169						TGACCCTGAGGAAGATGACGA	0.493													15	67					0	0	1	0	0
TBC1D25	4943	broad.mit.edu	37	X	48399769	48399769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:48399769C>T	uc004dka.1	+	2	283	c.172C>T	c.(172-174)CCC>TCC	p.P58S	TBC1D25_uc011mly.1_5'UTR|TBC1D25_uc004dkb.1_5'UTR|TBC1D25_uc011mlz.1_Intron|TBC1D25_uc011mma.1_5'UTR|TBC1D25_uc004dkc.1_5'UTR|TBC1D25_uc011mmb.1_Missense_Mutation_p.P62S|TBC1D25_uc011mmc.1_5'UTR|TBC1D25_uc011mmd.1_5'UTR	NM_002536	NP_002527	Q3MII6	TBC25_HUMAN	TBC1 domain family, member 25	58						intracellular	Rab GTPase activator activity			ovary(1)	1						TGCTGTAGATCCCCAGATCAC	0.582													17	110					0	0	1	0	0
WAS	7454	broad.mit.edu	37	X	48547050	48547050	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:48547050G>A	uc004dkm.3	+	10	990	c.933G>A	c.(931-933)GAG>GAA	p.E311E		NM_000377	NP_000368	P42768	WASP_HUMAN	Wiskott-Aldrich syndrome protein	311					blood coagulation|defense response|epidermis development|immune response|T cell receptor signaling pathway	actin cytoskeleton|cytosol	identical protein binding|small GTPase regulator activity			ovary(1)	1		all_lung(315;1.27e-10)				CCTCCACAGAGCCACTTCCGC	0.493			Mis|N|F|S			lymphoma			Wiskott-Aldrich_syndrome				4	23					0	0	1	0	0
GSPT2	23708	broad.mit.edu	37	X	51488324	51488324	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:51488324C>T	uc004dpl.2	+	1	1828	c.1602C>T	c.(1600-1602)ATC>ATT	p.I534I		NM_018094	NP_060564	Q8IYD1	ERF3B_HUMAN	peptide chain release factor 3	534					cell cycle|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|translational termination	cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)	1	Ovarian(276;0.236)					ACAAATCCATCATCTGCCCAG	0.403													10	36					0	0	1	0	0
SSX8	280659	broad.mit.edu	37	X	52657338	52657338	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:52657338C>T	uc011moa.1	+	5		c.605C>T			SSX8_uc011mob.1_RNA					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						TCCAGAGAATCATCCCGAAGG	0.413													5	61					0	0	1	0	0
SMC1A	8243	broad.mit.edu	37	X	53421715	53421715	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:53421715G>A	uc004dsg.2	-	19	3025	c.2956C>T	c.(2956-2958)CTG>TTG	p.L986L	SMC1A_uc011moe.1_Silent_p.L964L	NM_006306	NP_006297	Q14683	SMC1A_HUMAN	structural maintenance of chromosomes 1A	986					cell cycle checkpoint|cell division|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic sister chromatid cohesion|mitotic spindle organization|negative regulation of DNA endoreduplication|nuclear mRNA splicing, via spliceosome|response to radiation|signal transduction in response to DNA damage	cohesin core heterodimer|condensed chromosome kinetochore|condensed nuclear chromosome|cytoplasm|meiotic cohesin complex|nucleoplasm	ATP binding|chromatin binding|microtubule motor activity|protein heterodimerization activity			ovary(5)|central_nervous_system(1)	6						TCCTCACACAGATCACCGTAG	0.547													9	29					0	0	1	0	0
HUWE1	10075	broad.mit.edu	37	X	53630442	53630442	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:53630442G>A	uc004dsp.2	-	27	3165	c.2763C>T	c.(2761-2763)TCC>TCT	p.S921S		NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	921					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						ACTGGTTTACGGAGATGGAAC	0.418													4	7					0	0	1	0	0
ITIH5L	347365	broad.mit.edu	37	X	54783979	54783979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:54783979C>T	uc004dtj.2	-	8	2558	c.2528G>A	c.(2527-2529)GGA>GAA	p.G843E		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	843	Pro-rich.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						CAAGAGGATTCCAGGCCCCAG	0.507													6	52					0	0	1	0	0
TRO	7216	broad.mit.edu	37	X	54952870	54952870	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:54952870C>T	uc004dtq.2	+	8	1712	c.1605C>T	c.(1603-1605)CTC>CTT	p.L535L	TRO_uc004dts.2_Silent_p.L535L|TRO_uc004dtr.2_Silent_p.L535L|TRO_uc004dtt.2_RNA|TRO_uc004dtu.2_RNA|TRO_uc004dtv.2_Silent_p.L138L|TRO_uc011mok.1_Silent_p.L66L|TRO_uc004dtw.2_Silent_p.L138L|TRO_uc004dtx.2_5'UTR	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	535	MAGE.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						AGCTGGGTCTCCTCATGGTGA	0.493													4	10					0	0	1	0	0
PAGE3	139793	broad.mit.edu	37	X	55290291	55290291	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:55290291C>T	uc004dul.2	-	2	355	c.46G>A	c.(46-48)GAT>AAT	p.D16N	PAGE3_uc011mon.1_RNA	NM_001017931	NP_001017931			P antigen family, member 3 (prostate												0						TCTTGATCATCTCTTCTTTCT	0.338													6	15					0	0	1	0	0
ZXDB	158586	broad.mit.edu	37	X	57619841	57619841	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:57619841T>A	uc004dvd.2	+	1	1573	c.1360T>A	c.(1360-1362)TTC>ATC	p.F454I		NM_007157	NP_009088	P98169	ZXDB_HUMAN	zinc finger, X-linked, duplicated B	454	C2H2-type 7.|Required for interaction with ZXDC (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						CGAGAGACCTTTCCTTTGTGA	0.493													8	60					0	0	1	0	0
ZC3H12B	340554	broad.mit.edu	37	X	64719062	64719062	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:64719062G>A	uc010nko.2	+	3	908	c.899G>A	c.(898-900)TGG>TAG	p.W300*		NM_001010888	NP_001010888	Q5HYM0	ZC12B_HUMAN	zinc finger CCCH-type containing 12B	300							endonuclease activity|nucleic acid binding|zinc ion binding			lung(1)|kidney(1)|pancreas(1)	3						AAGCCAGAATGGAAGAAGTTT	0.398													4	22					0	0	1	0	0
AR	367	broad.mit.edu	37	X	66765700	66765700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:66765700G>A	uc004dwu.1	+	1	1827	c.712G>A	c.(712-714)GAG>AAG	p.E238K	AR_uc011mpd.1_Missense_Mutation_p.E238K|AR_uc011mpe.1_RNA|AR_uc011mpf.1_Missense_Mutation_p.E238K	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	236	Modulating.				cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	CAACGCCAAGGAGTTGTGTAA	0.612									Androgen_Insensitivity_Syndrome				6	20					0	0	1	0	0
AWAT2	158835	broad.mit.edu	37	X	69263029	69263029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:69263029C>T	uc004dxt.1	-	5	543	c.537G>A	c.(535-537)ATG>ATA	p.M179I		NM_001002254	NP_001002254	Q6E213	AWAT2_HUMAN	wax synthase 2	179						endoplasmic reticulum membrane|integral to membrane	long-chain-alcohol O-fatty-acyltransferase activity				0						CCACAATGACCATGTTGCCTG	0.537													6	8					0	0	1	0	0
AWAT1	158833	broad.mit.edu	37	X	69458123	69458123	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:69458123C>T	uc004dxy.2	+	5	563	c.522C>T	c.(520-522)CTC>CTT	p.L174L		NM_001013579	NP_001013597	Q58HT5	AWAT1_HUMAN	wax synthase 1	174					lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	long-chain-alcohol O-fatty-acyltransferase activity			ovary(3)	3						CTGGCAACCTCGTGGGCATTG	0.572													5	31					0	0	1	0	0
RAB41	347517	broad.mit.edu	37	X	69504464	69504464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:69504464G>A	uc004dyc.2	+	8	640	c.640G>A	c.(640-642)GAG>AAG	p.E214K	RAB41_uc010nkv.2_Missense_Mutation_p.E203K	NM_001032726	NP_001027898	Q5JT25	RAB41_HUMAN	RAB41, member RAS oncogene family	214					protein transport|small GTPase mediated signal transduction		GTP binding			ovary(2)|breast(2)	4						GGAATCCTTCGAGGAGTCAGG	0.463													11	21					0	0	1	0	0
SLC7A3	84889	broad.mit.edu	37	X	70145775	70145775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:70145775C>T	uc004dyn.2	-	12	1906	c.1748G>A	c.(1747-1749)GGC>GAC	p.G583D	SLC7A3_uc004dyo.2_Missense_Mutation_p.G583D	NM_032803	NP_116192	Q8WY07	CTR3_HUMAN	solute carrier family 7 (cationic amino acid	583	Helical; Name=14; (Potential).				cellular nitrogen compound metabolic process	integral to membrane|plasma membrane				ovary(1)|kidney(1)	2	Renal(35;0.156)				L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	GATCCCATAGCCGAAGTAGAT	0.507													10	33					0	0	1	0	0
IL2RG	3561	broad.mit.edu	37	X	70330370	70330370	+	Silent	SNP	T	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:70330370T>C	uc004dyw.1	-	3	452	c.438A>G	c.(436-438)CTA>CTG	p.L146L	IL2RG_uc004dyv.1_5'Flank|IL2RG_uc004dyx.1_Intron	NM_000206	NP_000197	P31785	IL2RG_HUMAN	interleukin 2 receptor, gamma precursor	146	Extracellular (Potential).				immune response|interleukin-4-mediated signaling pathway|interspecies interaction between organisms	external side of plasma membrane|integral to plasma membrane	cytokine receptor activity|interleukin-2 binding			pancreas(1)	1	Renal(35;0.156)				Aldesleukin(DB00041)|Denileukin diftitox(DB00004)	TCTGCAGTTTTAGCATCTGTG	0.468									Severe_Combined_Immunodeficiency_X-linked				5	48					0	0	1	0	0
MED12	9968	broad.mit.edu	37	X	70342949	70342949	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:70342949C>T	uc004dyy.2	+	11	1689	c.1490C>T	c.(1489-1491)TCC>TTC	p.S497F	MED12_uc011mpq.1_Missense_Mutation_p.S497F|MED12_uc004dyz.2_Missense_Mutation_p.S497F|MED12_uc004dza.2_Missense_Mutation_p.S344F	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	497					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					CTCCAGATCTCCTCAGATGAT	0.488													23	70					0	0	1	0	0
NONO	4841	broad.mit.edu	37	X	70519861	70519861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:70519861C>T	uc004dzo.2	+	13	2061	c.1351C>T	c.(1351-1353)CCT>TCT	p.P451S	BCYRN1_uc011mpt.1_Intron|NONO_uc004dzn.2_Missense_Mutation_p.P451S|NONO_uc004dzp.2_Missense_Mutation_p.P451S|NONO_uc011mpv.1_Missense_Mutation_p.P362S|NONO_uc004dzq.2_Missense_Mutation_p.P320S|ITGB1BP2_uc004dzr.1_5'Flank|ITGB1BP2_uc004dzs.1_5'Flank	NM_001145408	NP_001138880	Q15233	NONO_HUMAN	non-POU domain containing, octamer-binding	451					DNA recombination|DNA repair|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nuclear matrix|paraspeckles	DNA binding|identical protein binding|nucleotide binding|RNA binding		NONO/TFE3(2)	ovary(2)|kidney(2)	4	Renal(35;0.156)					TGGTGGAACTCCTCCTGCATT	0.463			T	TFE3	papillary renal cancer								6	40					0	0	1	0	0
TAF1	6872	broad.mit.edu	37	X	70679469	70679469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:70679469G>A	uc004dzu.3	+	36	5180	c.5129G>A	c.(5128-5130)AGT>AAT	p.S1710N	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.S1731N|TAF1_uc004dzv.3_Missense_Mutation_p.S918N|TAF1_uc010nle.1_RNA|TAF1_uc010nlf.1_Missense_Mutation_p.S135N|TAF1_uc004dzx.2_RNA|TAF1_uc004dzy.2_RNA|TAF1_uc004dzw.1_RNA|TAF1_uc010nlg.1_RNA	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	1710	Asp/Glu-rich (acidic tail).|Protein kinase 2.				G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				CCTCAAGCCAGTGTCCTGTAT	0.468													11	31					0	0	1	0	0
CDX4	1046	broad.mit.edu	37	X	72674277	72674277	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:72674277C>T	uc011mqk.1	+	3	711	c.711C>T	c.(709-711)TCC>TCT	p.S237S		NM_005193	NP_005184	O14627	CDX4_HUMAN	caudal type homeobox 4	237						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(35;0.156)					AGAAAATCTCCCAGTTTGAGA	0.453													3	8					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73065338	73065338	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:73065338G>A	uc004ebm.1	-	1		c.7251C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GAAGGGAAAGGAAGATTGGAG	0.463													5	24					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73066531	73066531	+	RNA	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:73066531C>T	uc004ebm.1	-	1		c.6058G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CACTTTCCTTCTCTAGTGCAT	0.483													3	8					0	0	1	0	0
SLC16A2	6567	broad.mit.edu	37	X	73751256	73751256	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:73751256C>T	uc004ebt.2	+	6	1876	c.1710C>T	c.(1708-1710)TTC>TTT	p.F570F	SLC16A2_uc010nlr.1_3'UTR	NM_006517	NP_006508	P36021	MOT8_HUMAN	solute carrier family 16, member 2	496	Helical; (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity			breast(2)|ovary(1)	3					Pyruvic acid(DB00119)	TCCTCTTCTTCGTCCCTCTGA	0.532													5	20					0	0	1	0	0
MAGEE1	57692	broad.mit.edu	37	X	75650688	75650688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:75650688C>T	uc004ecm.1	+	1	2572	c.2365C>T	c.(2365-2367)CGT>TGT	p.R789C		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	789	Interaction with DTNA (By similarity).|MAGE 2.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						CCTCCTGAATCGTGCTGCCCG	0.473													12	34					0	0	1	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913531	77913531	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:77913531G>A	uc004edc.1	-	2	683	c.387C>T	c.(385-387)GCC>GCT	p.A129A		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	129	Pro-rich.						nucleic acid binding|zinc ion binding			ovary(1)	1						GGATCTCATGGGCCATTGGAG	0.632													4	8					0	0	1	0	0
FAM46D	169966	broad.mit.edu	37	X	79699198	79699198	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:79699198G>A	uc004edl.1	+	5	1494	c.1160G>A	c.(1159-1161)GGT>GAT	p.G387D	FAM46D_uc004edm.1_Missense_Mutation_p.G387D	NM_152630	NP_689843	Q8NEK8	FA46D_HUMAN	hypothetical protein LOC169966	387										lung(2)	2						GGATCAAATGGTATGAGTTAA	0.373													3	1					0	0	1	0	0
BRWD3	254065	broad.mit.edu	37	X	79948455	79948455	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:79948455G>A	uc004edt.2	-	28	3510	c.3247C>T	c.(3247-3249)CAG>TAG	p.Q1083*	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Nonsense_Mutation_p.Q679*|BRWD3_uc004edp.2_Nonsense_Mutation_p.Q912*|BRWD3_uc004edq.2_Nonsense_Mutation_p.Q679*|BRWD3_uc010nmj.1_Nonsense_Mutation_p.Q679*|BRWD3_uc004edr.2_Nonsense_Mutation_p.Q753*|BRWD3_uc004eds.2_Nonsense_Mutation_p.Q679*|BRWD3_uc004edu.2_Nonsense_Mutation_p.Q753*|BRWD3_uc004edv.2_Nonsense_Mutation_p.Q679*|BRWD3_uc004edw.2_Nonsense_Mutation_p.Q679*|BRWD3_uc004edx.2_Nonsense_Mutation_p.Q679*|BRWD3_uc004edy.2_Nonsense_Mutation_p.Q679*|BRWD3_uc004edz.2_Nonsense_Mutation_p.Q753*|BRWD3_uc004eea.2_Nonsense_Mutation_p.Q753*|BRWD3_uc004eeb.2_Nonsense_Mutation_p.Q679*	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	1083										ovary(4)	4						CTGTAACACTGGAAAGAACTA	0.403													5	36					0	0	1	0	0
BRWD3	254065	broad.mit.edu	37	X	79973140	79973141	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:79973140_79973141GG>AA	uc004edt.2	-	19	2425_2426	c.2162_2163CC>TT	c.(2161-2163)GCC>GTT	p.A721V	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Missense_Mutation_p.A317V|BRWD3_uc004edp.2_Missense_Mutation_p.A550V|BRWD3_uc004edq.2_Missense_Mutation_p.A317V|BRWD3_uc010nmj.1_Missense_Mutation_p.A317V|BRWD3_uc004edr.2_Missense_Mutation_p.A391V|BRWD3_uc004eds.2_Missense_Mutation_p.A317V|BRWD3_uc004edu.2_Missense_Mutation_p.A391V|BRWD3_uc004edv.2_Missense_Mutation_p.A317V|BRWD3_uc004edw.2_Missense_Mutation_p.A317V|BRWD3_uc004edx.2_Missense_Mutation_p.A317V|BRWD3_uc004edy.2_Missense_Mutation_p.A317V|BRWD3_uc004edz.2_Missense_Mutation_p.A391V|BRWD3_uc004eea.2_Missense_Mutation_p.A391V|BRWD3_uc004eeb.2_Missense_Mutation_p.A317V	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	721										ovary(4)	4						CTCTTTCAGTGGCCATCTGGCT	0.411													20	36					0	0	1	0	0
SATL1	340562	broad.mit.edu	37	X	84362762	84362762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:84362762C>T	uc011mqx.1	-	1	1213	c.1213G>A	c.(1213-1215)GGC>AGC	p.G405S	SATL1_uc004een.2_Missense_Mutation_p.G405S	NM_001163541	NP_001157013	Q86VE3	SATL1_HUMAN	spermidine/spermine N1-acetyl transferase-like 1	218	Gln-rich.						N-acetyltransferase activity			breast(2)	2						TGGCTTGTGCCTGATTGGCTG	0.532													8	29					0	0	1	0	0
KLHL4	56062	broad.mit.edu	37	X	86772958	86772958	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:86772958G>A	uc004efb.2	+	1	244	c.62G>A	c.(61-63)TGG>TAG	p.W21*	KLHL4_uc004efa.2_Nonsense_Mutation_p.W21*	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	21						cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CGCTGGAGGTGGTTTAGTCAT	0.488													3	19					0	0	1	0	0
PCDH11X	27328	broad.mit.edu	37	X	91090780	91090780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:91090780C>T	uc004efk.1	+	1	1122	c.277C>T	c.(277-279)CGT>TGT	p.R93C	PCDH11X_uc004efl.1_Missense_Mutation_p.R93C|PCDH11X_uc004efo.1_Missense_Mutation_p.R93C|PCDH11X_uc010nmv.1_Missense_Mutation_p.R93C|PCDH11X_uc004efm.1_Missense_Mutation_p.R93C|PCDH11X_uc004efn.1_Missense_Mutation_p.R93C|PCDH11X_uc004efh.1_Missense_Mutation_p.R93C|PCDH11X_uc004efj.1_Missense_Mutation_p.R93C	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	93	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						TCGCATTGATCGTGAGAAATT	0.443													6	45					0	0	1	0	0
DIAPH2	1730	broad.mit.edu	37	X	96212846	96212846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:96212846C>T	uc004efu.3	+	16	2030	c.1634C>T	c.(1633-1635)TCA>TTA	p.S545L	DIAPH2_uc004eft.3_Missense_Mutation_p.S545L	NM_006729	NP_006720	O60879	DIAP2_HUMAN	diaphanous 2 isoform 156	545	Poly-Ser.|Potential.				cell differentiation|cytokinesis|multicellular organismal development|oogenesis	cytosol|early endosome|Golgi apparatus|mitochondrion|nucleolus	receptor binding|Rho GTPase binding			ovary(3)|lung(1)	4						CTCTCAAGTTCATCAGGAATT	0.433													3	7					0	0	1	0	0
SRPX2	27286	broad.mit.edu	37	X	99917235	99917235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:99917235G>A	uc004egb.2	+	4	706	c.226G>A	c.(226-228)GGA>AGA	p.G76R		NM_014467	NP_055282	O60687	SRPX2_HUMAN	sushi-repeat-containing protein, X-linked 2	76	Sushi 1.				angiogenesis|cell motility|cell-cell adhesion|positive regulation of cell migration involved in sprouting angiogenesis|regulation of phosphorylation	cytoplasm|extracellular region	receptor binding			ovary(2)	2						CTCACCGAAGGGAGGAAATTA	0.502													6	44					0	0	1	0	0
SYTL4	94121	broad.mit.edu	37	X	99955944	99955944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:99955944C>T	uc004egd.3	-	7	844	c.488G>A	c.(487-489)GGT>GAT	p.G163D	SYTL4_uc010nnc.2_Missense_Mutation_p.G163D|SYTL4_uc004ege.3_Missense_Mutation_p.G163D|SYTL4_uc004egf.3_Missense_Mutation_p.G163D|SYTL4_uc004egg.3_Missense_Mutation_p.G163D	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	163					exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCAGATGTCACCCATCTGTGT	0.438													19	61					0	0	1	0	0
NOX1	27035	broad.mit.edu	37	X	100104391	100104391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:100104391C>T	uc004egj.2	-	11	1527	c.1321G>A	c.(1321-1323)GAG>AAG	p.E441K	NOX1_uc004egl.3_Intron|NOX1_uc010nne.2_Missense_Mutation_p.E404K	NM_007052	NP_008983	Q9Y5S8	NOX1_HUMAN	NADPH oxidase 1 isoform long	441	Interaction with NOXO1.|Cytoplasmic (Potential).				angiogenesis|cell migration|electron transport chain|FADH2 metabolic process|hydrogen peroxide metabolic process|inflammatory response|intracellular pH elevation|positive regulation of integrin biosynthetic process|positive regulation of smooth muscle cell proliferation|positive regulation vascular endothelial growth factor production|respiratory burst|response to pH|signal transduction|superoxide anion generation	cell junction|early endosome|invadopodium membrane|NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|Rac GTPase binding|superoxide-generating NADPH oxidase activity|voltage-gated proton channel activity			ovary(1)	1						GCACCTGTCTCCCTGCAGATC	0.438													4	10					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	100143092	100143092	+	RNA	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:100143092G>A	uc010nnf.2	-	1		c.526C>T			uc004egm.2_RNA					full-length cDNA clone CS0DA010YB10 of Neuroblastoma of Homo sapiens (human).																		TGGTATTTCGGAATGACAATC	0.448													9	10					0	0	1	0	0
XKRX	402415	broad.mit.edu	37	X	100182978	100182978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:100182978G>A	uc004egn.2	-	1	921	c.316C>T	c.(316-318)CTC>TTC	p.L106F	XKRX_uc011mre.1_5'UTR	NM_212559	NP_997724	Q6PP77	XKR2_HUMAN	XK, Kell blood group complex subunit-related,	106	Helical; (Potential).					integral to membrane|plasma membrane				breast(1)	1						GGTCCCAAGAGGATTAGATGC	0.398													9	38					0	0	1	0	0
BTK	695	broad.mit.edu	37	X	100612548	100612548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:100612548G>A	uc004ehg.2	-	13	1319	c.1126C>T	c.(1126-1128)CCA>TCA	p.P376S	BTK_uc004ehf.2_Intron|BTK_uc010nnh.2_RNA|BTK_uc010nni.2_Intron|BTK_uc004ehe.2_RNA|BTK_uc010nnj.2_RNA|BTK_uc010nnk.2_RNA|BTK_uc010nnl.2_5'UTR|BTK_uc010nnm.2_5'UTR|BTK_uc010nnn.2_Intron|BTK_uc010nno.2_Missense_Mutation_p.P410S|BTK_uc004ehh.1_RNA|BTK_uc004ehi.2_Missense_Mutation_p.P376S	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	376	SH2.				calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						TGAGACACTGGATATTTGAGC	0.498									Agammaglobulinemia_X-linked				6	27					0	0	1	0	0
ARMCX6	54470	broad.mit.edu	37	X	100871378	100871379	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:100871378_100871379GG>AA	uc004ehx.2	-	3	577_578	c.232_233CC>TT	c.(232-234)CCT>TTT	p.P78F	ARMCX6_uc004ehy.2_Missense_Mutation_p.P78F	NM_019007	NP_061880	Q7L4S7	ARMX6_HUMAN	armadillo repeat containing, X-linked 6	78						integral to membrane					0						TGGGGCCCCAGGTTCAGTCCAA	0.45													12	42					0	0	1	0	0
ARMCX2	9823	broad.mit.edu	37	X	100911708	100911708	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:100911708G>A	uc004eid.2	-	3	1222	c.867C>T	c.(865-867)TCC>TCT	p.S289S	ARMCX2_uc004eie.3_Silent_p.S289S|ARMCX2_uc004eif.3_Silent_p.S289S|ARMCX2_uc004eig.3_Silent_p.S289S|ARMCX2_uc010nnt.2_Silent_p.S289S	NM_177949	NP_808818	Q7L311	ARMX2_HUMAN	ALEX2 protein	289						integral to membrane	binding			ovary(6)	6						CCCCATTCCGGGACCTGGTTA	0.592													14	70					0	0	1	0	0
NXF5	55998	broad.mit.edu	37	X	101092552	101092552	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:101092552G>A	uc011mrk.1	-	15	1354	c.994C>T	c.(994-996)CAG>TAG	p.Q332*	NXF5_uc004eih.1_RNA|NXF5_uc004eii.1_RNA|NXF5_uc004eij.1_RNA|NXF5_uc004eik.1_RNA|NXF5_uc004eil.1_RNA	NM_032946	NP_116564	Q9H1B4	NXF5_HUMAN	nuclear RNA export factor 5	332	NTF2; truncated.				mRNA export from nucleus|multicellular organismal development	actin cytoskeleton|cytoplasm|nucleus	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						AAGTCATGCTGAGTTTCAGGC	0.542													7	47					0	0	1	0	0
NXF5	55998	broad.mit.edu	37	X	101092580	101092580	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:101092580C>T	uc011mrk.1	-	15	1326	c.966G>A	c.(964-966)GTG>GTA	p.V322V	NXF5_uc004eih.1_RNA|NXF5_uc004eii.1_RNA|NXF5_uc004eij.1_RNA|NXF5_uc004eik.1_RNA|NXF5_uc004eil.1_RNA	NM_032946	NP_116564	Q9H1B4	NXF5_HUMAN	nuclear RNA export factor 5	322	NTF2; truncated.				mRNA export from nucleus|multicellular organismal development	actin cytoskeleton|cytoplasm|nucleus	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						TGAGGGAGTCCACGTTTCGTG	0.542													9	41					0	0	1	0	0
GPRASP1	9737	broad.mit.edu	37	X	101911118	101911118	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:101911118C>T	uc004ejj.3	+	5	3078	c.2277C>T	c.(2275-2277)GCC>GCT	p.A759A	GPRASP1_uc004eji.3_Silent_p.A759A|GPRASP1_uc010nod.2_Silent_p.A759A	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	759	Glu-rich.					cytoplasm	protein binding			ovary(1)|lung(1)	2						AAGATGAAGCCATTTCAGAGG	0.473													12	60					0	0	1	0	0
GPRASP2	114928	broad.mit.edu	37	X	101972234	101972234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:101972234C>T	uc004ejk.2	+	4	3771	c.2437C>T	c.(2437-2439)CGT>TGT	p.R813C	GPRASP2_uc004ejl.2_Missense_Mutation_p.R813C|GPRASP2_uc004ejm.2_Missense_Mutation_p.R813C|GPRASP2_uc011mrp.1_Missense_Mutation_p.R152C	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	813						cytoplasm	protein binding			ovary(1)	1						TTCTGCATTTCGTGAATTTGA	0.358													25	65					0	0	1	0	0
NXF3	56000	broad.mit.edu	37	X	102338148	102338148	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:102338148C>T	uc004eju.2	-	6	665	c.594G>A	c.(592-594)CTG>CTA	p.L198L	NXF3_uc010noi.1_Silent_p.L48L|NXF3_uc011mrw.1_Silent_p.L198L|NXF3_uc011mrx.1_Silent_p.L109L	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	198						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						TTTCTGACTTCAGCTCCCTGT	0.502													7	36					0	0	1	0	0
PLP1	5354	broad.mit.edu	37	X	103041538	103041539	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:103041538_103041539CC>TT	uc010nov.2	+	4	616_617	c.336_337CC>TT	c.(334-339)GGCCTG>GGTTTG	p.112_113GL>GL	RAB9B_uc004eli.1_Intron|PLP1_uc004elk.2_Silent_p.112_113GL>GL|PLP1_uc004elj.2_Silent_p.112_113GL>GL|PLP1_uc011msf.1_Silent_p.57_58GL>GL|PLP1_uc010now.1_Silent_p.116_117GL>GL|PLP1_uc010nox.2_Silent_p.66_67GL>GL	NM_001128834	NP_001122306	P60201	MYPR_HUMAN	proteolipid protein 1 isoform 1	112_113	Cytoplasmic (Probable).				cell death|synaptic transmission	integral to membrane				ovary(1)	1						GCGGCAAGGGCCTGAGCGCAAC	0.579													12	53					0	0	1	0	0
FAM199X	139231	broad.mit.edu	37	X	103434387	103434387	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:103434387C>T	uc004elw.2	+	6	1261	c.1095C>T	c.(1093-1095)TTC>TTT	p.F365F	FAM199X_uc004elx.2_Silent_p.F139F	NM_207318	NP_997201	Q6PEV8	F199X_HUMAN	hypothetical protein LOC139231	365								p.F365L(1)		ovary(1)	1						GTGGGCTCTTCCTTAACGAAG	0.498													11	27					0	0	1	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106083983	106083983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:106083983G>A	uc004emo.2	+	10	1753	c.1588G>A	c.(1588-1590)GAA>AAA	p.E530K	MORC4_uc004emp.3_Intron|TBC1D8B_uc004emn.2_Missense_Mutation_p.E530K	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	530	Rab-GAP TBC.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CTTGGCTACTGAAGAAATTGA	0.453													6	21					0	0	1	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106111664	106111664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:106111664G>A	uc004emo.2	+	18	2935	c.2770G>A	c.(2770-2772)GAA>AAA	p.E924K	MORC4_uc004emp.3_Intron	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	924						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AAAAGGAGATGAACTTTCCAA	0.343													7	27					0	0	1	0	0
CLDN2	9075	broad.mit.edu	37	X	106171843	106171843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:106171843G>A	uc004emq.1	+	2	904	c.385G>A	c.(385-387)GGC>AGC	p.G129S	MORC4_uc004emp.3_Intron|CLDN2_uc004emt.1_Missense_Mutation_p.G129S	NM_020384	NP_065117	P57739	CLD2_HUMAN	claudin 2	129	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1						CATCCTTGGAGGCCTCCTGGG	0.512													26	52					0	0	1	0	0
COL4A6	1288	broad.mit.edu	37	X	107415744	107415744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:107415744C>T	uc004enw.3	-	32	3263	c.3160G>A	c.(3160-3162)GGG>AGG	p.G1054R	COL4A6_uc004env.3_Missense_Mutation_p.G1053R|COL4A6_uc011msn.1_Missense_Mutation_p.G1053R|COL4A6_uc010npk.2_Missense_Mutation_p.G1053R	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	1054	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						CCAGGCGACCCTCTGATACCT	0.488									Alport_syndrome_with_Diffuse_Leiomyomatosis				13	62					0	0	1	0	0
COL4A6	1288	broad.mit.edu	37	X	107433709	107433709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:107433709C>T	uc004enw.3	-	20	1445	c.1342G>A	c.(1342-1344)GAA>AAA	p.E448K	COL4A6_uc004env.3_Missense_Mutation_p.E447K|COL4A6_uc011msn.1_Missense_Mutation_p.E447K|COL4A6_uc010npk.2_Missense_Mutation_p.E447K	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	448	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TGTAGAGTTTCAGTCTCAAAT	0.433									Alport_syndrome_with_Diffuse_Leiomyomatosis				4	9					0	0	1	0	0
COL4A6	1288	broad.mit.edu	37	X	107436862	107436862	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:107436862G>A	uc004enw.3	-	17	1174	c.1071C>T	c.(1069-1071)ATC>ATT	p.I357I	COL4A6_uc004env.3_Silent_p.I356I|COL4A6_uc011msn.1_Silent_p.I356I|COL4A6_uc010npk.2_Silent_p.I356I	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	357	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TTGCACCTGAGATCACAGCAC	0.368									Alport_syndrome_with_Diffuse_Leiomyomatosis				4	34					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107811878	107811878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:107811878G>A	uc004enz.1	+	5	498	c.296G>A	c.(295-297)GGA>GAA	p.G99E	COL4A5_uc011mso.1_Missense_Mutation_p.G99E	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	99	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GGACTTCCTGGATTTCCAGGG	0.323									Alport_syndrome_with_Diffuse_Leiomyomatosis				6	19					0	0	1	0	0
IRS4	8471	broad.mit.edu	37	X	107977127	107977127	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:107977127C>T	uc004eoc.2	-	1	2481	c.2448G>A	c.(2446-2448)CGG>CGA	p.R816R		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	816						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						AAGGTGAGCTCCGAAAAGGGT	0.502													10	126					0	0	1	0	0
GUCY2F	2986	broad.mit.edu	37	X	108631794	108631794	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:108631794G>A	uc004eod.3	-	15	3156	c.2880C>T	c.(2878-2880)ATC>ATT	p.I960I	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	960	Guanylate cyclase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						CAGAGCTCAGGATATCTAAGG	0.498													4	7					0	0	1	0	0
GUCY2F	2986	broad.mit.edu	37	X	108719109	108719109	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:108719109C>T	uc004eod.3	-	2	333	c.57G>A	c.(55-57)AGG>AGA	p.R19R	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	19					intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						CCAGCAGTTTCCTGAAAGCCG	0.557											OREG0019905	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	6					0	0	1	0	0
TMEM164	84187	broad.mit.edu	37	X	109416618	109416618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:109416618C>T	uc004eom.2	+	7	1152	c.833C>T	c.(832-834)GCT>GTT	p.A278V	TMEM164_uc004eol.2_Missense_Mutation_p.A129V|TMEM164_uc010npq.2_Missense_Mutation_p.A239V|TMEM164_uc004eon.1_5'Flank	NM_032227	NP_115603	Q5U3C3	TM164_HUMAN	transmembrane protein 164 isoform b	278	Helical; (Potential).					integral to membrane				large_intestine(1)|lung(1)|skin(1)	3						TCATACATGGCTGGGCCCTTG	0.507													9	31					0	0	1	0	0
RGAG1	57529	broad.mit.edu	37	X	109695015	109695015	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:109695015G>A	uc004eor.1	+	3	1416	c.1170G>A	c.(1168-1170)GTG>GTA	p.V390V	RGAG1_uc011msr.1_Silent_p.V390V	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	390										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						ATCCGCCAGTGAGAGCAACAG	0.537													15	128					0	0	1	0	0
RGAG1	57529	broad.mit.edu	37	X	109696104	109696104	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:109696104G>A	uc004eor.1	+	3	2505	c.2259G>A	c.(2257-2259)GTG>GTA	p.V753V	RGAG1_uc011msr.1_Silent_p.V753V	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	753										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						CCTCTGATGTGATGTCCACAC	0.542													11	30					0	0	1	0	0
RGAG1	57529	broad.mit.edu	37	X	109698506	109698506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:109698506G>A	uc004eor.1	+	4	4370	c.4124G>A	c.(4123-4125)GGA>GAA	p.G1375E		NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	1375										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GATCACCTTGGACAGAGCACA	0.488													15	42					0	0	1	0	0
CAPN6	827	broad.mit.edu	37	X	110496295	110496295	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:110496295G>A	uc004epc.1	-	4	615	c.447C>T	c.(445-447)TTC>TTT	p.F149F	CAPN6_uc011msu.1_5'UTR	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	149	Calpain catalytic.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						TGGAGAAAGAGAAGACCAGAT	0.428													9	12					0	0	1	0	0
ALG13	79868	broad.mit.edu	37	X	110970077	110970077	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:110970077C>T	uc011msy.1	+	16	1804	c.1770C>T	c.(1768-1770)TTC>TTT	p.F590F	ALG13_uc011msx.1_Silent_p.F486F|ALG13_uc011msz.1_Silent_p.F512F|ALG13_uc011mta.1_Silent_p.F486F|ALG13_uc011mtb.1_Silent_p.F486F			Q9NP73	ALG13_HUMAN	SubName: Full=Asparagine-linked glycosylation 13 homolog (S. cerevisiae);	590					dolichol-linked oligosaccharide biosynthetic process|lipid glycosylation|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane	carbohydrate binding|N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity			lung(1)	1						AGAAGATGTTCAAGAAAATTC	0.448													15	25					0	0	1	0	0
TRPC5	7224	broad.mit.edu	37	X	111090415	111090415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:111090415C>T	uc004epl.1	-	6	2546	c.1627G>A	c.(1627-1629)GAA>AAA	p.E543K	TRPC5_uc004epm.1_Missense_Mutation_p.E543K	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	543	Extracellular (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						GCTCTGGTTTCATAATAGAAG	0.433													6	39					0	0	1	0	0
LHFPL1	340596	broad.mit.edu	37	X	111874685	111874685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:111874685G>A	uc004epq.2	-	4	959	c.626C>T	c.(625-627)TCT>TTT	p.S209F	LHFPL1_uc004epp.2_Missense_Mutation_p.S232F|LHFPL1_uc010nqa.2_RNA|LHFPL1_uc010nqb.2_Missense_Mutation_p.S176F	NM_178175	NP_835469	Q86WI0	LHPL1_HUMAN	lipoma HMGIC fusion partner-like 1 precursor	209						integral to membrane					0						CATAGCATAAGAATTGGTATT	0.493													5	27					0	0	1	0	0
HTR2C	3358	broad.mit.edu	37	X	114141243	114141243	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:114141243C>T	uc004epu.1	+	6	1370	c.642C>T	c.(640-642)TTC>TTT	p.F214F	HTR2C_uc010nqc.1_Silent_p.F214F|HTR2C_uc004epv.1_Missense_Mutation_p.R183C	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	214	Helical; Name=5; (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	ACCCAAATTTCGTTCTTATTG	0.468													15	44					0	0	1	0	0
DOCK11	139818	broad.mit.edu	37	X	117788729	117788729	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:117788729C>T	uc004eqp.2	+	43	4923	c.4860C>T	c.(4858-4860)ACC>ACT	p.T1620T	DOCK11_uc004eqq.2_Silent_p.T1399T	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1620	DHR-2.				blood coagulation	cytosol	GTP binding			ovary(3)	3						TCAGGAAAACCTGGCTTGATA	0.428													6	27					0	0	1	0	0
KIAA1210	57481	broad.mit.edu	37	X	118223491	118223491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:118223491C>T	uc004era.3	-	11	1702	c.1702G>A	c.(1702-1704)GAT>AAT	p.D568N		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	568										ovary(4)|skin(1)	5						CCAGCTCTATCGCCCAGGCCA	0.468													4	28					0	0	1	0	0
KIAA1210	57481	broad.mit.edu	37	X	118228050	118228050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:118228050G>A	uc004era.3	-	9	1276	c.1276C>T	c.(1276-1278)CTT>TTT	p.L426F		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	426										ovary(4)|skin(1)	5						CACACTGGAAGGCCACGAATC	0.483													5	4					0	0	1	0	0
SEPT6	23157	broad.mit.edu	37	X	118783993	118783993	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:118783993G>A	uc004erv.2	-	5	862	c.597C>T	c.(595-597)ATC>ATT	p.I199I	SEPT6_uc010nqk.2_RNA|SEPT6_uc004ers.2_Silent_p.I199I|SEPT6_uc004ert.2_Silent_p.I199I|SEPT6_uc004eru.2_Silent_p.I199I|SEPT6_uc004erw.2_Silent_p.I141I|SEPT6_uc011mtv.1_Silent_p.I141I|SEPT6_uc011mtw.1_Silent_p.I229I	NM_015129	NP_055944	Q14141	SEPT6_HUMAN	septin 6 isoform B	199					cell cycle|cytokinesis|interspecies interaction between organisms	cleavage furrow|condensed chromosome kinetochore|midbody|septin complex|spindle	GTP binding|protein binding			lung(1)|ovary(1)|prostate(1)|kidney(1)	4						TGGTGATTTTGATTTTGAACT	0.478													27	60					0	0	1	0	0
FAM70A	55026	broad.mit.edu	37	X	119410842	119410842	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:119410842G>A	uc004eso.3	-	8	872	c.645C>T	c.(643-645)ATC>ATT	p.I215I	FAM70A_uc004esp.3_Silent_p.I191I|FAM70A_uc010nqo.2_Intron	NM_017938	NP_060408	Q5JRV8	FA70A_HUMAN	hypothetical protein LOC55026 isoform 1	215						integral to membrane				lung(1)|breast(1)	2						AGAGGTGGATGATATCTTGGC	0.557													17	29					0	0	1	0	0
CT47B1	643311	broad.mit.edu	37	X	120009409	120009409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:120009409C>T	uc011muc.1	-	1	371	c.116G>A	c.(115-117)GGC>GAC	p.G39D		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	39											0						GCTGTCGGGGCCGGAGTCGCC	0.736													8	63					0	0	1	0	0
STAG2	10735	broad.mit.edu	37	X	123164887	123164887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:123164887C>T	uc004etz.3	+	4	539	c.200C>T	c.(199-201)CCA>CTA	p.P67L	STAG2_uc004eua.2_Missense_Mutation_p.P67L|STAG2_uc004eub.2_Missense_Mutation_p.P67L|STAG2_uc004euc.2_Missense_Mutation_p.P67L|STAG2_uc004eud.2_Missense_Mutation_p.P67L|STAG2_uc004eue.2_Missense_Mutation_p.P67L	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	67					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						CCTTCTGGTCCAAACCGAATG	0.418													5	30					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123539081	123539081	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:123539081C>T	uc004euj.2	-	26	5234	c.5170G>A	c.(5170-5172)GGT>AGT	p.G1724S	ODZ1_uc011muj.1_Missense_Mutation_p.G1730S|ODZ1_uc010nqy.2_Missense_Mutation_p.G1731S	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1724	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CGCAGGGAACCATCTGGATTC	0.537													6	9					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123587262	123587262	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:123587262G>A	uc004euj.2	-	22	4072	c.4008C>T	c.(4006-4008)ATC>ATT	p.I1336I	ODZ1_uc011muj.1_Silent_p.I1342I|ODZ1_uc010nqy.2_Silent_p.I1343I	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1336	NHL 2.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TTACAGTTGTGATCACAGCAT	0.428													4	38					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123657239	123657239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:123657239C>T	uc004euj.2	-	17	3072	c.3008G>A	c.(3007-3009)AGG>AAG	p.R1003K	ODZ1_uc011muj.1_Missense_Mutation_p.R1002K|ODZ1_uc010nqy.2_Missense_Mutation_p.R1003K	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1003	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AATAGTTCCCCTCTCTGGACA	0.438													4	17					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123775763	123775763	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:123775763C>T	uc004euj.2	-	11	2019	c.1955G>A	c.(1954-1956)GGA>GAA	p.G652E	ODZ1_uc011muj.1_Missense_Mutation_p.G651E|ODZ1_uc010nqy.2_Missense_Mutation_p.G652E	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	652	EGF-like 4.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						ACAGTTAACTCCTCCCCAGCC	0.498													15	98					0	0	1	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685274	125685274	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:125685274C>T	uc004eul.2	-	1	1569	c.1318G>A	c.(1318-1320)GAG>AAG	p.E440K		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	440										skin(3)|ovary(1)	4						AGCTTCATCTCAGGCCAGTTG	0.552													20	63					0	0	1	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685344	125685344	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:125685344G>A	uc004eul.2	-	1	1499	c.1248C>T	c.(1246-1248)TTC>TTT	p.F416F		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	416										skin(3)|ovary(1)	4						AATTCACCCAGAAATCATTGT	0.567													8	72					0	0	1	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685857	125685857	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:125685857G>A	uc004eul.2	-	1	986	c.735C>T	c.(733-735)ATC>ATT	p.I245I		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	245										skin(3)|ovary(1)	4						CCCTCGGACGGATGTGGGCAT	0.652													7	34					0	0	1	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125686004	125686004	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:125686004C>T	uc004eul.2	-	1	839	c.588G>A	c.(586-588)TGG>TGA	p.W196*		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	196	WD 2.									skin(3)|ovary(1)	4						CGGCGAAGATCCAGTCCTTGT	0.667													9	14					0	0	1	0	0
XPNPEP2	7512	broad.mit.edu	37	X	128901581	128901581	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:128901581C>T	uc004eut.1	+	20	1987	c.1743C>T	c.(1741-1743)TAC>TAT	p.Y581Y		NM_003399	NP_003390	O43895	XPP2_HUMAN	X-prolyl aminopeptidase 2, membrane-bound	581					cellular process|proteolysis	anchored to membrane|plasma membrane	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0						GCTCCCAGTACCCAGGGAGCT	0.577													9	58					0	0	1	0	0
BCORL1	63035	broad.mit.edu	37	X	129147270	129147270	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:129147270C>T	uc004evb.1	+	4	636	c.522C>T	c.(520-522)TTC>TTT	p.F174F	BCORL1_uc010nrd.1_Silent_p.F76F	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	174					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						AGAATACTTTCATTTTGGCAA	0.552													14	19					0	0	1	0	0
BCORL1	63035	broad.mit.edu	37	X	129147377	129147377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:129147377C>T	uc004evb.1	+	4	743	c.629C>T	c.(628-630)TCG>TTG	p.S210L	BCORL1_uc010nrd.1_Missense_Mutation_p.S112L	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	210	Pro-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						GCTCCCGGTTCGGCCTCTGTG	0.617													10	80					0	0	1	0	0
SLC25A14	9016	broad.mit.edu	37	X	129499602	129499602	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:129499602C>T	uc004evn.1	+	9	1020	c.807C>T	c.(805-807)ATC>ATT	p.I269I	SLC25A14_uc011mut.1_3'UTR|SLC25A14_uc011muu.1_3'UTR|SLC25A14_uc010nrg.2_3'UTR|SLC25A14_uc004evo.1_Silent_p.I90I|SLC25A14_uc004evp.1_Silent_p.I269I|SLC25A14_uc004evq.1_Silent_p.I266I|SLC25A14_uc004evr.1_Silent_p.I297I	NM_003951	NP_003942	O95258	UCP5_HUMAN	solute carrier family 25, member 14 isoform	269	Solcar 3.				aerobic respiration|mitochondrial transport	integral to plasma membrane|mitochondrial inner membrane	binding			ovary(1)	1						AGAGGGCAATCGTGGGACATG	0.453													4	45					0	0	1	0	0
GPR119	139760	broad.mit.edu	37	X	129518781	129518781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:129518781G>A	uc011muv.1	-	1	641	c.641C>T	c.(640-642)TCC>TTC	p.S214F		NM_178471	NP_848566	Q8TDV5	GP119_HUMAN	G protein-coupled receptor 119	214	Cytoplasmic (Potential).					integral to membrane|plasma membrane	lipid binding			ovary(2)	2						AGTCCGTGGGGATCGATAACC	0.517													3	14					0	0	1	0	0
FAM45B	55855	broad.mit.edu	37	X	129629498	129629498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:129629498G>A	uc010nrh.2	+	1	584	c.366G>A	c.(364-366)ATG>ATA	p.M122I	uc004evu.2_Intron	NM_207009	NP_996892			hypothetical protein LOC404636											skin(1)	1				all cancers(201;0.0293)		CAGTTAAAATGATGGAGAGTT	0.443													9	62					0	0	1	0	0
FAM45B	55855	broad.mit.edu	37	X	129629839	129629839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:129629839G>A	uc010nrh.2	+	1	925	c.707G>A	c.(706-708)GGA>GAA	p.G236E	uc004evu.2_Intron	NM_207009	NP_996892			hypothetical protein LOC404636											skin(1)	1				all cancers(201;0.0293)		TACGTCGCTGGATTTGTAGAC	0.532													8	46					0	0	1	0	0
FRMD7	90167	broad.mit.edu	37	X	131212472	131212472	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:131212472G>A	uc004ewn.2	-	12	1751	c.1573C>T	c.(1573-1575)CCC>TCC	p.P525S	FRMD7_uc011muy.1_Missense_Mutation_p.P510S	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	525					regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					ATTGCAGTGGGCTCTACATAG	0.498													6	15					0	0	1	0	0
SAGE1	55511	broad.mit.edu	37	X	134988265	134988265	+	Silent	SNP	C	T	T	rs151240146		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:134988265C>T	uc004ezh.2	+	6	704	c.537C>T	c.(535-537)CCC>CCT	p.P179P	SAGE1_uc010nry.1_Silent_p.P148P|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	179										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					CAACTGGTCCCACAGGGCTTA	0.433													8	29					0	0	1	0	0
ARHGEF6	9459	broad.mit.edu	37	X	135762891	135762891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:135762891G>A	uc004fab.2	-	15	2165	c.1703C>T	c.(1702-1704)TCT>TTT	p.S568F	ARHGEF6_uc011mwd.1_Missense_Mutation_p.S441F|ARHGEF6_uc011mwe.1_Missense_Mutation_p.S414F	NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	568					apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					ACTACTTACAGAATGAGCACT	0.468													8	20					0	0	1	0	0
ARHGEF6	9459	broad.mit.edu	37	X	135762906	135762906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:135762906G>A	uc004fab.2	-	15	2150	c.1688C>T	c.(1687-1689)TCA>TTA	p.S563L	ARHGEF6_uc011mwd.1_Missense_Mutation_p.S436L|ARHGEF6_uc011mwe.1_Missense_Mutation_p.S409L	NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	563					apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					AGCACTACATGATGACGATGA	0.468													9	20					0	0	1	0	0
ARHGEF6	9459	broad.mit.edu	37	X	135770135	135770135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:135770135G>A	uc004fab.2	-	11	1663	c.1201C>T	c.(1201-1203)CAT>TAT	p.H401Y	ARHGEF6_uc011mwd.1_Missense_Mutation_p.H274Y|ARHGEF6_uc011mwe.1_Missense_Mutation_p.H247Y	NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	401	DH.				apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					ATATCCTGATGATCTGGATGA	0.219													6	13					0	0	1	0	0
F9	2158	broad.mit.edu	37	X	138633334	138633334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:138633334G>A	uc004fas.1	+	6	663	c.634G>A	c.(634-636)GAT>AAT	p.D212N	F9_uc004fat.1_Missense_Mutation_p.D174N	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein	212					blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	AACCATTTTGGATAACATCAC	0.418													6	22					0	0	1	0	0
CDR1	1038	broad.mit.edu	37	X	139866504	139866504	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:139866504G>A	uc004fbg.1	-	1	220	c.28C>T	c.(28-30)CTG>TTG	p.L10L	uc004fbf.1_RNA	NM_004065	NP_004056	P51861	CDR1_HUMAN	cerebellar degeneration-related protein 1,	10	23 X 6 AA approximate repeats.|2.										0	Acute lymphoblastic leukemia(192;7.65e-05)	Lung SC(4;0.051)				ACGTCTTCCAGAAAATCCACG	0.428													5	34					0	0	1	0	0
SPANXE	171489	broad.mit.edu	37	X	140785708	140785708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:140785708C>T	uc004fbq.2	-	2	301	c.208G>A	c.(208-210)GAC>AAC	p.D70N		NM_145665	NP_663698	Q8TAD1	SPNXE_HUMAN	SPANX family, member E	70						cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					CGGGCGTGGTCATTCACCAGT	0.443													14	130					0	0	1	0	0
SPANXE	171489	broad.mit.edu	37	X	140785712	140785712	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:140785712C>T	uc004fbq.2	-	2	297	c.204G>A	c.(202-204)GTG>GTA	p.V68V		NM_145665	NP_663698	Q8TAD1	SPNXE_HUMAN	SPANX family, member E	68						cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					CGTGGTCATTCACCAGTTCCT	0.448													15	126					0	0	1	0	0
SPANXE	171489	broad.mit.edu	37	X	140785745	140785745	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:140785745C>T	uc004fbq.2	-	2	264	c.171G>A	c.(169-171)AGG>AGA	p.R57R		NM_145665	NP_663698	Q8TAD1	SPNXE_HUMAN	SPANX family, member E	57						cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					TTTTAAAGTTCCTCCTGTAGC	0.483													14	149					0	0	1	0	0
SPANXE	171489	broad.mit.edu	37	X	140785748	140785748	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:140785748C>T	uc004fbq.2	-	2	261	c.168G>A	c.(166-168)AGG>AGA	p.R56R		NM_145665	NP_663698	Q8TAD1	SPNXE_HUMAN	SPANX family, member E	56						cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					TAAAGTTCCTCCTGTAGCGAA	0.488													36	129					0	0	1	0	0
MAGEC3	139081	broad.mit.edu	37	X	140984964	140984964	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:140984964A>C	uc011mwp.1	+	7	1420	c.1420A>C	c.(1420-1422)AAA>CAA	p.K474Q	MAGEC3_uc004fbs.2_Missense_Mutation_p.K176Q|MAGEC3_uc010nsj.2_Missense_Mutation_p.K176Q	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	474	MAGE 2.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ATATCAAACAAAAGAGCCTGT	0.458													7	36					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994567	140994567	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:140994567C>T	uc004fbt.2	+	4	1663	c.1377C>T	c.(1375-1377)TTC>TTT	p.F459F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	459							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGAGTCTTTTCCAGAGTTCCC	0.488										HNSCC(15;0.026)			15	48					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994575	140994575	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:140994575C>T	uc004fbt.2	+	4	1671	c.1385C>T	c.(1384-1386)TCC>TTC	p.S462F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	462							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTCCAGAGTTCCCCTGAGAGA	0.483										HNSCC(15;0.026)			8	60					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994842	140994842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:140994842G>A	uc004fbt.2	+	4	1938	c.1652G>A	c.(1651-1653)AGC>AAC	p.S551N	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	551							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTTCCTCAGAGCCCTCCTCAG	0.562										HNSCC(15;0.026)			44	99					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995274	140995274	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:140995274C>A	uc004fbt.2	+	4	2370	c.2084C>A	c.(2083-2085)CCT>CAT	p.P695H	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	695							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CTCCAAATTCCTCAGAGTCCT	0.567										HNSCC(15;0.026)			5	30					1.23904e-05	1.25379e-05	1	1	0
MAGEC1	9947	broad.mit.edu	37	X	140996141	140996141	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:140996141C>T	uc004fbt.2	+	4	3237	c.2951C>T	c.(2950-2952)TCT>TTT	p.S984F	MAGEC1_uc010nsl.1_Missense_Mutation_p.S51F	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	984	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GACCTCACCTCTGAGGGGTGT	0.478										HNSCC(15;0.026)			7	58					0	0	1	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290767	141290767	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:141290767G>A	uc004fbu.1	-	3	1355	c.1007C>T	c.(1006-1008)GCT>GTT	p.A336V		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	336	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					ATCTTTCAAAGCATCCTTGTA	0.473										HNSCC(46;0.14)			12	60					0	0	1	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290969	141290969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:141290969C>T	uc004fbu.1	-	3	1153	c.805G>A	c.(805-807)GAG>AAG	p.E269K		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	269	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCCCTAGGCTCCCCATAGACG	0.527										HNSCC(46;0.14)			8	66					0	0	1	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291239	141291239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:141291239G>A	uc004fbu.1	-	3	883	c.535C>T	c.(535-537)CCT>TCT	p.P179S		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	179	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AGTATCACAGGAAAGTAATCT	0.483										HNSCC(46;0.14)			28	78					0	0	1	0	0
SPANXN3	139067	broad.mit.edu	37	X	142596789	142596789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:142596789C>T	uc004fbw.2	-	2	369	c.281G>A	c.(280-282)GGA>GAA	p.G94E		NM_001009609	NP_001009609	Q5MJ09	SPXN3_HUMAN	SPANX-N3 protein	94										ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					ATTTGAAGATCCTTCAGATAA	0.433													6	16					0	0	1	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717897	142717897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:142717897G>A	uc004fbx.2	-	2	1404	c.1028C>T	c.(1027-1029)CCG>CTG	p.P343L	SLITRK4_uc004fby.2_Missense_Mutation_p.P343L	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	343	Extracellular (Potential).|LRRNT.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GCAAGGTGCCGGGCAAGGTGT	0.473													12	34					0	0	1	0	0
SLITRK4	139065	broad.mit.edu	37	X	142718463	142718463	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:142718463G>A	uc004fbx.2	-	2	838	c.462C>T	c.(460-462)CTC>CTT	p.L154L	SLITRK4_uc004fby.2_Silent_p.L154L	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	154	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCAGTTTGTGGAGCTTATTGA	0.398													17	33					0	0	1	0	0
SLITRK2	84631	broad.mit.edu	37	X	144905618	144905618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:144905618G>A	uc004fcd.2	+	5	2665	c.1675G>A	c.(1675-1677)GAA>AAA	p.E559K	SLITRK2_uc010nsp.2_Missense_Mutation_p.E559K|SLITRK2_uc010nso.2_Missense_Mutation_p.E559K|SLITRK2_uc011mwq.1_Missense_Mutation_p.E559K|SLITRK2_uc011mwr.1_Missense_Mutation_p.E559K|SLITRK2_uc011mws.1_Missense_Mutation_p.E559K|SLITRK2_uc004fcg.2_Missense_Mutation_p.E559K|SLITRK2_uc011mwt.1_Missense_Mutation_p.E559K	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	559	Extracellular (Potential).|LRRCT 2.					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					GGTGACTTGCGAATCTCCTGC	0.498													4	24					0	0	1	0	0
AFF2	2334	broad.mit.edu	37	X	147744125	147744125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:147744125G>A	uc004fcp.2	+	3	1356	c.877G>A	c.(877-879)GAT>AAT	p.D293N	AFF2_uc004fco.2_Missense_Mutation_p.D289N|AFF2_uc004fcq.2_Missense_Mutation_p.D289N|AFF2_uc004fcr.2_Missense_Mutation_p.D289N|AFF2_uc011mxb.1_Missense_Mutation_p.D293N|AFF2_uc004fcs.2_Missense_Mutation_p.D289N	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	293					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					CAGACCCATGGATGGCCAGGA	0.493													4	36					0	0	1	0	0
AFF2	2334	broad.mit.edu	37	X	148037297	148037297	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:148037297G>A	uc004fcp.2	+	11	2201	c.1722G>A	c.(1720-1722)ACG>ACA	p.T574T	AFF2_uc004fcq.2_Silent_p.T564T|AFF2_uc004fcr.2_Silent_p.T535T|AFF2_uc011mxb.1_Silent_p.T539T|AFF2_uc004fcs.2_Silent_p.T541T|AFF2_uc011mxc.1_Silent_p.T215T	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	574					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					AAGTGAAGACGAATGCCAGTC	0.473													9	86					0	0	1	0	0
CD99L2	83692	broad.mit.edu	37	X	149937520	149937520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:149937520G>A	uc004fel.2	-	11	894	c.776C>T	c.(775-777)CCA>CTA	p.P259L	CD99L2_uc004fek.2_RNA|CD99L2_uc004fem.2_Missense_Mutation_p.P210L|CD99L2_uc004fen.2_Missense_Mutation_p.P187L|CD99L2_uc004feo.2_RNA|CD99L2_uc011myb.1_Missense_Mutation_p.P186L	NM_031462	NP_113650	Q8TCZ2	C99L2_HUMAN	CD99 antigen-like 2 isoform E3'-E4'-E3-E4	259	Cytoplasmic (Potential).|Poly-Pro.				cell adhesion	cell junction|integral to membrane				large_intestine(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GATCCGGGCTGGTTCGGGCGG	0.622													20	61					0	0	1	0	0
GPR50	9248	broad.mit.edu	37	X	150349105	150349105	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:150349105C>T	uc010ntg.1	+	2	1185	c.1050C>T	c.(1048-1050)GAC>GAT	p.D350D	uc004fes.1_5'Flank|GPR50_uc011myc.1_3'UTR	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	350	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GTGAACAAGACCGTGCCCATG	0.602													14	57					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150832764	150832764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:150832764G>A	uc004fev.3	+	11	1347	c.1015G>A	c.(1015-1017)GAT>AAT	p.D339N		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	339						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGGCCTGATGGATCCAGTGGA	0.597													6	19					0	0	1	0	0
PASD1	139135	broad.mit.edu	37	X	150839663	150839663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:150839663C>T	uc004fev.3	+	12	1557	c.1225C>T	c.(1225-1227)CTT>TTT	p.L409F		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	409	Potential.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GATGGATCACCTTCAGGTCAG	0.463													13	29					0	0	1	0	0
FATE1	89885	broad.mit.edu	37	X	150889963	150889963	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:150889963C>T	uc004fex.2	+	3	415	c.331C>T	c.(331-333)CAT>TAT	p.H111Y		NM_033085	NP_149076	Q969F0	FATE1_HUMAN	fetal and adult testis expressed transcript	111						endoplasmic reticulum|integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CATACGTTTCCATTATGATCG	0.602													18	29					0	0	1	0	0
GABRE	2564	broad.mit.edu	37	X	151123310	151123310	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:151123310C>T	uc004ffi.2	-	9	1438	c.1384G>A	c.(1384-1386)GAT>AAT	p.D462N	GABRE_uc011myd.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	462	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CCCTCACAATCGGGGACCATG	0.567													9	18					0	0	1	0	0
MAGEA6	4105	broad.mit.edu	37	X	151869913	151869913	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:151869913C>T	uc004ffq.1	+	3	797	c.603C>T	c.(601-603)TTC>TTT	p.F201F	MAGEA6_uc004ffr.1_Silent_p.F201F|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	201	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					AGACAGGCTTCCTGATAATCA	0.557													12	73					0	0	1	0	0
ABCD1	215	broad.mit.edu	37	X	152994743	152994743	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:152994743C>T	uc004fif.2	+	2	1356	c.957C>T	c.(955-957)CTC>CTT	p.L319L		NM_000033	NP_000024	P33897	ABCD1_HUMAN	ATP-binding cassette, sub-family D (ALD), member	319	ABC transmembrane type-1.				fatty acid beta-oxidation using acyl-CoA oxidase|peroxisomal membrane transport|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|identical protein binding|peroxisomal fatty-acyl-CoA transporter activity				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AGATCAACCTCATCCTTCTGG	0.597													19	32					0	0	1	0	0
L1CAM	3897	broad.mit.edu	37	X	153141286	153141286	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:153141286G>A	uc004fjb.2	-	1	114	c.6C>T	c.(4-6)GTC>GTT	p.V2V	L1CAM_uc004fjc.2_Silent_p.V2V|L1CAM_uc010nuo.2_Silent_p.V2V|L1CAM_uc004fje.1_Silent_p.V2V	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	2					axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GCAGCGCCACGACCATCTTTC	0.542											OREG0003586	type=REGULATORY REGION|Gene=L1CAM|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	10	23					0	0	1	0	0
ARHGAP4	393	broad.mit.edu	37	X	153184723	153184723	+	Silent	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:153184723G>A	uc004fjk.1	-	6	738	c.696C>T	c.(694-696)TTC>TTT	p.F232F	ARHGAP4_uc011mzf.1_Silent_p.F209F|ARHGAP4_uc004fjl.1_Silent_p.F272F|ARHGAP4_uc010nup.1_RNA	NM_001666	NP_001657	P98171	RHG04_HUMAN	Rho GTPase activating protein 4 isoform 2	232					apoptosis|cytoskeleton organization|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|Rho protein signal transduction	cytosol|focal adhesion|nucleus	Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			central_nervous_system(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TGTGCTCCATGAACTTGGCCT	0.557													5	41					0	0	1	0	0
OPN1MW	2652	broad.mit.edu	37	X	153490621	153490621	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:153490621C>T	uc004fkd.2	+	2	439	c.357C>T	c.(355-357)TTC>TTT	p.F119F		NM_000513	NP_000504	P04001	OPSG_HUMAN	opsin 1 (cone pigments), medium-wave-sensitive	119	Extracellular.				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0	all_cancers(53;1.83e-16)|all_epithelial(53;2.73e-10)|all_lung(58;6.39e-07)|Lung NSC(58;8.37e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					ATGGCTACTTCGTGCTGGGCC	0.607													8	71					0	0	1	0	0
ATP6AP1	537	broad.mit.edu	37	X	153657475	153657475	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:153657475C>T	uc004flf.1	+	2	304	c.243C>T	c.(241-243)GCC>GCT	p.A81A	uc004fld.3_5'Flank|uc004fle.3_5'Flank|ATP6AP1_uc004flg.1_RNA|ATP6AP1_uc004flh.1_Silent_p.A41A	NM_001183	NP_001174	Q15904	VAS1_HUMAN	ATPase, H+ transporting, lysosomal accessory	81					ATP hydrolysis coupled proton transport	integral to membrane|proton-transporting V-type ATPase, V1 domain|vacuolar membrane	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			ovary(3)|breast(1)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TAGATCCCGCCCTGGAGCTGG	0.652													11	62					0	0	1	0	0
PLXNA3	55558	broad.mit.edu	37	X	153689749	153689749	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:153689749T>G	uc004flm.2	+	3	1078	c.905T>G	c.(904-906)CTG>CGG	p.L302R		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	302	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					AAGCCTGGCCTGCTGCTGGCC	0.662													12	50					0	0	1	0	0
PLXNA3	55558	broad.mit.edu	37	X	153693442	153693442	+	Silent	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:153693442C>T	uc004flm.2	+	11	2298	c.2125C>T	c.(2125-2127)CTA>TTA	p.L709L		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	709	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GGCTAAGAACCTACCTCAGCC	0.647													3	19					0	0	1	0	0
F8	2157	broad.mit.edu	37	X	154157483	154157483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:154157483C>T	uc004fmt.2	-	14	4753	c.4582G>A	c.(4582-4584)GAA>AAA	p.E1528K		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1528	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TTGCTAGTTTCCGTAGGGAAT	0.478													6	23					0	0	1	0	0
F8	2157	broad.mit.edu	37	X	154225334	154225334	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrX:154225334T>G	uc004fmt.2	-	3	473	c.302A>C	c.(301-303)GAT>GCT	p.D101A	F8_uc011mzx.1_Missense_Mutation_p.D66A	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	101	Plastocyanin-like 1.|F5/8 type A 1.		D -> V (in HEMA).|D -> G (in HEMA; severe).|D -> H (in HEMA; severe sporadic).		acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GACCACTGTATCATAAACCTC	0.453													9	55					0	0	1	0	0
SRY	6736	broad.mit.edu	37	Y	2655388	2655388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrY:2655388C>T	uc004fqg.1	-	1	405	c.257G>A	c.(256-258)CGA>CAA	p.R86Q		NM_003140	NP_003131	Q05066	SRY_HUMAN	sex determining region Y	86	Sufficient for interaction with KPNB1.|HMG box.				cell differentiation|male sex determination|positive regulation of transcription, DNA-dependent|sex differentiation	cytoplasm|nuclear speck	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding				0						CTCTGAGTTTCGCATTCTGGG	0.502									Swyer_syndrome				5	9					0	0	1	0	0
TSPY2	64591	broad.mit.edu	37	Y	6114350	6114350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrY:6114350G>A	uc004fqr.1	+	1	87	c.41G>A	c.(40-42)AGG>AAG	p.R14K	TTTY23_uc004fqq.1_5'Flank|TSPY2_uc004fqs.1_Missense_Mutation_p.R14K	NM_022573	NP_072095	A6NKD2	TSPY2_HUMAN	testis specific protein, Y-linked 2	14					cell differentiation|gonadal mesoderm development|nucleosome assembly|spermatogenesis	cytoplasm|nucleus					0						GTGCCAGAGAGGCTGCGGCAG	0.716													7	30					0	0	1	0	0
DDX3Y	8653	broad.mit.edu	37	Y	15025720	15025720	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrY:15025720C>T	uc004fsu.1	+	8	937	c.628C>T	c.(628-630)CCT>TCT	p.P210S	DDX3Y_uc010nwv.1_Missense_Mutation_p.P210S|DDX3Y_uc011naq.1_Missense_Mutation_p.P210S|DDX3Y_uc004fsv.2_Missense_Mutation_p.P210S|DDX3Y_uc010nww.1_Missense_Mutation_p.P26S|DDX3Y_uc011nar.1_Missense_Mutation_p.P207S	NM_001122665	NP_001116137	O15523	DDX3Y_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,	210	Helicase ATP-binding.					cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|RNA binding				0						ACATGCCATTCCTATTATTAA	0.378													3	14					0	0	1	0	0
NLGN4Y	22829	broad.mit.edu	37	Y	16952706	16952706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chrY:16952706C>T	uc004ftg.2	+	6	2267	c.2015C>T	c.(2014-2016)TCC>TTC	p.S672F	NLGN4Y_uc004fte.2_Missense_Mutation_p.S504F|NLGN4Y_uc011nas.1_Missense_Mutation_p.S692F|NLGN4Y_uc004ftf.2_Missense_Mutation_p.S365F|NLGN4Y_uc004fth.2_Missense_Mutation_p.S672F	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	672	Extracellular (Potential).				brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						CGAGATTATTCCACCGAATTA	0.512													14	60					0	0	1	0	0
WDR65	149465	broad.mit.edu	37	1	43647265	43647265	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr1:43647265delC	uc001cip.1	+	3	339	c.218delC	c.(217-219)GCTfs	p.A73fs	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Frame_Shift_Del_p.A62fs|WDR65_uc001ciq.1_Frame_Shift_Del_p.A73fs	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	73										skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CGGTACCTCGCTATCTCTGAG	0.458													15	51	---	---	---	---					
STAM	8027	broad.mit.edu	37	10	17737055	17737058	+	Frame_Shift_Del	DEL	GTTG	-	-			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr10:17737055_17737058delGTTG	uc001ipj.1	+	7	759_762	c.543_546delGTTG	c.(541-546)GAGTTGfs	p.E181fs	STAM_uc010qcf.1_Frame_Shift_Del_p.E70fs|STAM_uc009xjw.1_5'UTR	NM_003473	NP_003464	Q92783	STAM1_HUMAN	signal transducing adaptor molecule 1	181_182	UIM.				cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|early endosome membrane	SH3/SH2 adaptor activity			large_intestine(1)|ovary(1)	2						TAGCCATTGAGTTGTCTCTCAAGG	0.382													10	51	---	---	---	---					
ERAL1	26284	broad.mit.edu	37	17	27185807	27185807	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:27185807delT	uc002hcy.1	+	7	935	c.925delT	c.(925-927)TCAfs	p.S309fs	ERAL1_uc002hcz.1_Intron|ERAL1_uc002hda.1_Frame_Shift_Del_p.S116fs|ERAL1_uc002hdb.1_Frame_Shift_Del_p.S192fs	NM_005702	NP_005693	O75616	ERAL1_HUMAN	Era-like 1	309					ribosomal small subunit assembly	mitochondrial inner membrane|mitochondrial matrix	GTP binding|ribosomal small subunit binding|rRNA binding			skin(1)	1	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;1.12e-05)|all cancers(11;5.32e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000272)|OV - Ovarian serous cystadenocarcinoma(11;0.105)			CTTCATGTTGTCAGCCCTAAG	0.507													32	218	---	---	---	---					
SGSH	6448	broad.mit.edu	37	17	78188470	78188473	+	Frame_Shift_Del	DEL	CCGC	-	-	rs104894638		TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr17:78188470_78188473delCCGC	uc002jxz.3	-	4	534_537	c.447_450delGCGG	c.(445-450)GGGCGGfs	p.G149fs	SGSH_uc002jya.3_5'UTR|SGSH_uc002jxy.2_Frame_Shift_Del_p.G149fs|SGSH_uc010wue.1_Frame_Shift_Del_p.G161fs	NM_000199	NP_000190	P51688	SPHM_HUMAN	N-sulfoglucosamine sulfohydrolase precursor	149_150			R -> Q (in MPS3A; severe).|R -> W (in MPS3A).		proteoglycan metabolic process	lysosome	metal ion binding|N-sulfoglucosamine sulfohydrolase activity|sulfuric ester hydrolase activity			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			TAGTGATGTTCCGCCCCACCTGGA	0.627													8	44	---	---	---	---					
ZNF419	79744	broad.mit.edu	37	19	58004884	58004884	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr19:58004884delG	uc002qov.2	+	5	1199	c.959delG	c.(958-960)TGTfs	p.C320fs	ZNF547_uc002qpm.3_Intron|ZNF419_uc010ety.1_Frame_Shift_Del_p.C321fs|ZNF419_uc010etz.1_Frame_Shift_Del_p.C308fs|ZNF419_uc010eua.1_Frame_Shift_Del_p.C307fs|ZNF419_uc002qow.2_Frame_Shift_Del_p.C288fs|ZNF419_uc010eub.1_Frame_Shift_Del_p.C275fs|ZNF419_uc010euc.1_Frame_Shift_Del_p.C274fs	NM_024691	NP_078967	Q96HQ0	ZN419_HUMAN	zinc finger protein 419 isoform 2	320	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0252)|Lung(386;0.171)		TGCAGTGAATGTGGAAAATTG	0.393													11	50	---	---	---	---					
MLH1	4292	broad.mit.edu	37	3	37081681	37081681	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr3:37081681delC	uc003cgl.2	+	14	1623	c.1563delC	c.(1561-1563)CTCfs	p.L521fs	MLH1_uc011aye.1_Frame_Shift_Del_p.L280fs|MLH1_uc011ayb.1_Frame_Shift_Del_p.L280fs|MLH1_uc010hge.2_Frame_Shift_Del_p.L521fs|MLH1_uc003cgn.3_Frame_Shift_Del_p.L280fs|MLH1_uc011ayc.1_Frame_Shift_Del_p.L423fs|MLH1_uc011ayd.1_Frame_Shift_Del_p.L280fs|MLH1_uc003cgo.2_Frame_Shift_Del_p.L280fs|MLH1_uc010hgj.1_Frame_Shift_Del_p.L163fs|MLH1_uc010hgk.2_Frame_Shift_Del_p.L163fs|MLH1_uc010hgl.1_Frame_Shift_Del_p.L96fs|MLH1_uc010hgn.2_Frame_Shift_Del_p.L163fs|MLH1_uc010hgm.2_Intron|MLH1_uc010hgo.2_Intron|MLH1_uc010hgp.2_5'Flank|MLH1_uc010hgq.2_5'Flank	NM_000249	NP_000240	P40692	MLH1_HUMAN	MutL protein homolog 1	521	Interaction with EXO1.				mismatch repair|somatic hypermutation of immunoglobulin genes	chiasma|MutLalpha complex|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|protein binding	p.0?(1)		large_intestine(40)|haematopoietic_and_lymphoid_tissue(8)|ovary(6)|pancreas(5)|stomach(3)|central_nervous_system(3)|endometrium(3)|breast(3)|prostate(3)|skin(2)|NS(1)	77						TTGCAGTTCTCCGGGAGATGT	0.458		1	D|Mis|N|F|S		colorectal|endometrial|ovarian|CNS	colorectal|endometrial|ovarian|CNS		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				8	37	---	---	---	---					
SMARCA2	6595	broad.mit.edu	37	9	2039777	2039779	+	In_Frame_Del	DEL	CAG	-	-	rs113070757	byFrequency	TCGA-EE-A2MR-06A-11D-A196-08	TCGA-EE-A2MR-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba3570af-a282-4f88-890f-8eabea099d12	541b06b9-a34e-4ee8-af13-e66fed3c39f4	g.chr9:2039777_2039779delCAG	uc003zhc.2	+	4	766_768	c.667_669delCAG	c.(667-669)CAGdel	p.Q238del	SMARCA2_uc003zhd.2_In_Frame_Del_p.Q238del|SMARCA2_uc010mha.2_In_Frame_Del_p.Q229del	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	238	Poly-Gln.			Missing (in Ref. 1; CAA51407).	chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		gcagcagcaacagcagcagcagc	0.271													5	8	---	---	---	---					
